RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16184
(363 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 63.8 bits (155), Expect = 1e-13
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L++ ++ D +E+ L +F GPI I + + +T + GYA++ ++ D A
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 163 ADGKKIDGRRVLVD 176
+ I G+ V +
Sbjct: 62 MNFDVIKGKPVRIM 75
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 62.3 bits (151), Expect = 3e-13
Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+FI +++ T++ LR F +G +K+ +++ + +T + RG+ F+ + + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-Q 61
Query: 164 DGKKIDGRRVLVDV 177
++D + + V
Sbjct: 62 SRHELDSKTIDPKV 75
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 61.9 bits (150), Expect = 5e-13
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
L++ + ++ +L F YG I + ++ +K+TG+PRG AF+ Y + A
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 163 ADGKKIDGRRVLVDVER 179
+ +G + V
Sbjct: 68 LNNVIPEGGSQPLSVRL 84
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 59.6 bits (144), Expect = 3e-12
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
L + + D ++ +L F GPI ++ + TG GYAF+++ E D A K
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 163 ADGKKIDGRRVLVDVER 179
+G + +R+ V R
Sbjct: 64 LNGITVRNKRLKVSYAR 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 60.0 bits (145), Expect = 3e-12
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMH 157
+ TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 63
Query: 158 SAYKHADGKKIDGRRVLVDVERSR 181
+A ++ +G ++D R + D +
Sbjct: 64 NAMRYINGTRLDDRIIRTDWDAGF 87
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 59.3 bits (143), Expect = 4e-12
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 159 AYKHADGKKIDGRRVLV 175
A + A+G ++DGRR+ V
Sbjct: 67 AKERANGMELDGRRIRV 83
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 58.5 bits (141), Expect = 9e-12
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
L+++ + ++ +L + F YG I ++ ++VTG RG FI ++ + A K
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 163 ADGKKIDGRRVLVDVERS 180
+G+K G + V+ +
Sbjct: 68 LNGQKPSGATEPITVKFA 85
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 57.6 bits (139), Expect = 1e-11
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
L ++ +++ S++ ++ F +G +KK VH +G+ G A + +E + D A K
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKK-AAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 164 DGKKIDGRRVLVDVERS 180
+G +DGR + + + S
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 57.4 bits (138), Expect = 2e-11
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVH-NKVTGKPRGYAFIEYEHERDMHSAYKH 162
+FI ++ + E L F +G I + + + TG +GYAFI + +A +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 163 ADGKKIDGRRVLVDVERSRTVKG 185
+G+ + R + V + KG
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 56.3 bits (135), Expect = 4e-11
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
L + + + ++ + R F G I+ +V +K+TG+ GY F+ Y +D A
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 163 ADGKKIDGRRVLVDVER 179
+G ++ + + V R
Sbjct: 64 LNGLRLQTKTIKVSYAR 80
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 56.6 bits (136), Expect = 5e-11
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+ + + + S ++ F Y I V + G P G A + +E + +A
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 163 ADGKKIDGRRVLVDV 177
+ + I R+V + +
Sbjct: 71 LNDRPIGSRKVKLVL 85
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 56.1 bits (135), Expect = 6e-11
Identities = 14/77 (18%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKI-VMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
+ + + + ++ ++R F +G +K + + TG RG+ F+++ ++D A+
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 161 KH-ADGKKIDGRRVLVD 176
+ GRR++++
Sbjct: 69 NALCHSTHLYGRRLVLE 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 55.8 bits (134), Expect = 7e-11
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI + ++ +++ +GP+K +V + TG +GYAF EY A
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 164 DGKKIDGRRVLVD 176
+G ++ +++LV
Sbjct: 64 NGMQLGDKKLLVQ 76
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 55.8 bits (134), Expect = 7e-11
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+ L++ + + + L F +G I I + + T K RG+AF+E+E D +A
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 162 HADGKKIDGRRVLVDVERSRTVK 184
+ + ++ GR + V++ + +K
Sbjct: 66 NMNESELFGRTIRVNLAKPMRIK 88
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.8 bits (134), Expect = 1e-10
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P + + T+++ ++ SE L F GP+ M ++VTG+ +GY F+E+ E
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVERSR 181
D A K D K+ G+ + V+ +
Sbjct: 62 EDADYAIKIMDMIKLYGKPIRVNKASAH 89
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 55.4 bits (133), Expect = 1e-10
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNK---VTGKPRGYAFIEYEHERDMHSAY 160
LFI +N+ T+E L+ F G IK + K G+ F+EY+ A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 161 KHADGKKIDGRRVLVDVERSRT 182
K G +DG ++ V + T
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.4 bits (133), Expect = 1e-10
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
PN D T+ + ++ DT E+ L+ F +G I +I + +K TG+ +G+AFI +
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVERSRT 182
D A G D + V+ + T
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWAKPST 89
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.6 bits (131), Expect = 2e-10
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+F+ ++ DT E K+R F +G ++ I + + T K RG+ FI ++ E + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-K 60
Query: 164 DGKKIDGRRVLVDV 177
+ + + V
Sbjct: 61 KYHNVGLSKCEIKV 74
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 54.3 bits (130), Expect = 2e-10
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
+ + LFI ++++T++ LR FE +G + V++ + T + RG+ F+ Y ++ +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 159 AYKHADGKKIDGRRVLVD 176
A A K+DGR V
Sbjct: 64 AMN-ARPHKVDGRVVEPK 80
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 54.7 bits (131), Expect = 3e-10
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 90 PNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIE 149
P + F+ LFI ++++T+E LR +E +G + V++ + + + RG+ F+
Sbjct: 9 PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68
Query: 150 YEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKG 185
+ ++ +A A IDGR V +R G
Sbjct: 69 FSSMAEVDAAMA-ARPHSIDGRVVEPKRAVAREESG 103
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 55.7 bits (133), Expect = 3e-10
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 80 KLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT 139
+L+Q+ P + N D + L + + E +LR+ FE YGPI+ + +V ++ T
Sbjct: 21 QLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET 80
Query: 140 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPRRLGGGLG 196
+ RGY F++++ A +G I +R+ V + S + + +G G G
Sbjct: 81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNG 137
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 53.9 bits (129), Expect = 6e-10
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
+ + + E E YG ++++ + N G ++++ E D A
Sbjct: 27 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAV 85
Query: 161 KHADGKKIDGRRVLVD 176
+ + +G+ + +
Sbjct: 86 IDLNNRWFNGQPIHAE 101
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 52.5 bits (125), Expect = 9e-10
Identities = 12/75 (16%), Positives = 31/75 (41%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ ++ +R + + + + + R +A+I+ + D +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 163 ADGKKIDGRRVLVDV 177
+G KI+G ++ V
Sbjct: 63 LNGLKIEGYTLVTKV 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 53.5 bits (128), Expect = 1e-09
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+ L+I + Y + ++ F YGPI++I + + + RG A++ YE D +A
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNACD 64
Query: 162 HADGKKIDGRRVLVDVERSRTVKGWLPRR 190
H G + R ++V + + +
Sbjct: 65 HLSGFNVCNRYLVVLYYNANRAFQKMDTK 93
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 52.8 bits (126), Expect = 1e-09
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
F +F+ + Y T+++ LR+ FE +G I++ V++ ++ TGK RGY F+ A
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 161 KHADGKKIDGRRVLVDVERSRTVKGWLPRRLGGGLGG 197
K + IDGR+ V+ G PR L G
Sbjct: 70 KDPNP-IIDGRKANVN----LAYLGAKPRSLQTGFAI 101
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 52.6 bits (126), Expect = 1e-09
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 102 KTLFIARVN-YDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
+FI +N +S + F YG I + G+AF++Y +ER+ +A
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAV 67
Query: 161 KHADGKKIDGRRVLVDVERSR 181
DG+ I G+ + +++
Sbjct: 68 AGEDGRMIAGQVLDINLAAEP 88
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 52.3 bits (125), Expect = 1e-09
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
TM K L++ + TSE + +EF I + K R YAF+ + + D
Sbjct: 4 TMSSVKILYVRNLMLSTSEEMIEKEFN------NIKPGAVERVKKIRDYAFVHFSNREDA 57
Query: 157 HSAYKHADGKKIDGRRVLVDVERSR 181
A K +GK +DG + V + +
Sbjct: 58 VEAMKALNGKVLDGSPIEVTLAKPV 82
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 51.6 bits (123), Expect = 2e-09
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
LF+ ++ + E +++ +F YG IK I + ++ TG +GYA +EYE + +A +
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 163 ADGKKIDGRRVLVDVERSR 181
+G +I G+ + VD +
Sbjct: 69 LNGAEIMGQTIQVDWCFVK 87
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.5 bits (123), Expect = 3e-09
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMH 157
+ L + + + T+E L+ F +G + + + + TG +G+ F+ +
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 158 SAYKHADGKKIDGRRVLVDVERSR 181
IDGR + S+
Sbjct: 65 KVMS--QRHMIDGRWCDCKLPNSK 86
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 50.9 bits (121), Expect = 5e-09
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
LF+ ++Y +SE L + F YGP+ ++ + +T KP+G+AF+ + AY
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 162 HADGKKIDGRRVLVDVERSR 181
DG+ GR + V +
Sbjct: 69 EVDGQVFQGRMLHVLPSTIK 88
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.0 bits (119), Expect = 6e-09
Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+FI +++DT++ L+ F +G + + + +TG+ RG+ F+ ++ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 164 DGKKIDGRRVLV 175
K++G+ +
Sbjct: 61 KEHKLNGKVIDP 72
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 50.0 bits (119), Expect = 7e-09
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
TL++ D + + LR F +G I + M PR AF+ YE A
Sbjct: 6 NTLYVY--GEDMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVA 57
Query: 162 HADGKKIDGRRVLVDVERSR 181
+G +++ ++ V++ R +
Sbjct: 58 ELNGTQVESVQLKVNIARKQ 77
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.1 bits (119), Expect = 1e-08
Identities = 17/83 (20%), Positives = 39/83 (46%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
LFI + + + L + F +G + + +K T + + F+ Y++ +A
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 160 YKHADGKKIDGRRVLVDVERSRT 182
+ +G +I +R+ V ++RS+
Sbjct: 77 IQSMNGFQIGMKRLKVQLKRSKN 99
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 50.0 bits (119), Expect = 1e-08
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+TL ++++ +E +L+ FE I+ + GK +G A+IE++ E D +
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIEFKSEADAEKNLE 71
Query: 162 HADGKKIDGRRVLVDVERSR 181
G +IDGR V + +
Sbjct: 72 EKQGAEIDGRSVSLYYTGEK 91
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 49.3 bits (117), Expect = 1e-08
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
K +F+ + DT E LR FE YG I+ I ++ ++ +GK RG+AF+ ++ +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 162 HADGKKIDGRRVLVDV 177
++G V
Sbjct: 63 Q-KYHTVNGHNCEVRK 77
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 49.6 bits (118), Expect = 1e-08
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHER 154
N + T++ + ++ +R+ F +G I +I + +GY+F+ +
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHE 65
Query: 155 DMHSAYKHADGKKIDGRRVLVDVERSR 181
A +G I+G V +
Sbjct: 66 SAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 49.7 bits (118), Expect = 1e-08
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+++ + D + F YG I+ + K +AF+E+E RD A
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIR---DIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 72
Query: 163 ADGKKIDGRRVLVDVERSRTVKG 185
DG DG R+ V+ RS G
Sbjct: 73 RDGYDYDGYRLRVEFPRSGRGTG 95
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 49.6 bits (118), Expect = 2e-08
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A P + + + Y + L + F +G + KI+ + A ++Y
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVS 57
Query: 156 MHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPR 189
A DG+ I + ++ S+ +
Sbjct: 58 AQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 91
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.0 bits (116), Expect = 3e-08
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
P T F+ + YD +E ++ F + + +G+ + E+E + S
Sbjct: 13 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 72
Query: 159 AYKHADGKKIDGRRVLVDVERSRTVKGWLPR 189
A + + + +R+ VDV K P
Sbjct: 73 ALS-LNEESLGNKRIRVDVADQAQDKDSGPS 102
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.6 bits (115), Expect = 3e-08
Identities = 18/83 (21%), Positives = 41/83 (49%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
+P K L++ ++ +E L F + K + +TG+ RG AFI + ++
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 75
Query: 159 AYKHADGKKIDGRRVLVDVERSR 181
A +G K+ G+ ++++ +++
Sbjct: 76 ALHLVNGYKLYGKILVIEFGKNK 98
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 48.5 bits (115), Expect = 3e-08
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIV--MVHNKVTGKPRGYAFIEYEHERDMHSAY 160
LFI + ++ E V K RG+AF+EYE R A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 161 KHADGK--KIDGRRVLVD 176
+ ++ G ++ VD
Sbjct: 63 RKLMPGRIQLWGHQIAVD 80
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.2 bits (114), Expect = 4e-08
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 163 ADGKKIDGRRVLVDVERSRT 182
+GK +DGR++ VD +
Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 47.5 bits (112), Expect = 5e-08
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
T+ + + +++K+ + F+ GPI + + K +A IE+ +A
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK 59
Query: 163 ADGKKIDGRRVLVD 176
K + ++V
Sbjct: 60 -THKVVGQNEIIVS 72
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 48.1 bits (114), Expect = 5e-08
Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 100 PFKTLFIARVNYDTSESKLRRE-FEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
P T++I +N + +L++ ++ +I+ + + K RG AF+ ++ +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 159 AYKHADGKKIDGRRVLVDVERSRT 182
A + G + + + ++ +
Sbjct: 62 ALRSMQGFPFYDKPMRIQYAKTDS 85
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 47.9 bits (113), Expect = 5e-08
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 103 TLFIARVNYDTSESKLRREFEV---YGPIKKIVMVHNKVTGK---PRGYAFIEYEHERDM 156
+F+ ++ ++ ++ + E +G I K+V+ ++ P A++ Y D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 157 HSAYKHADGKKIDGRRV 173
A + + +DGR +
Sbjct: 70 LRAIQCVNNVVVDGRTL 86
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 47.4 bits (112), Expect = 5e-08
Identities = 14/73 (19%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+F+ ++ +T+ ++ FE +G + +++ +K T + RG+ F+ +E E + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 164 DGKKIDGRRVLVD 176
+I+ + V
Sbjct: 61 HFHEINNKMVECK 73
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 47.7 bits (113), Expect = 5e-08
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
LF+ + D +E ++R+ FE YG ++ + +K + FI E A
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKVE 63
Query: 163 ADGKKIDGRRVLVD 176
D + G+++ V
Sbjct: 64 LDNMPLRGKQLRVR 77
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 47.4 bits (112), Expect = 8e-08
Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
+ K L ++ + + + LR+ F +G I + ++ N+ +G+ F+ +E+ D
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADA 64
Query: 157 HSAYKHADGKKIDGRRVLVDVERSR 181
A + G ++GR++ V+ +R
Sbjct: 65 DRAREKLHGTVVEGRKIEVNNATAR 89
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 47.5 bits (112), Expect = 8e-08
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 89 DPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVH--------NKVTG 140
DP+ + + +++ +N + L F+ G +K +K TG
Sbjct: 1 DPDEDSDNS-----AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG 55
Query: 141 KPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181
KP+G A + YE +A + DGK G ++ V + R +
Sbjct: 56 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 111 YDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 170
+ LR E +G I+K+++ P G A + + + + DG+ G
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDRH----PDGVASVSFRDPEEADYCIQTLDGRWFGG 84
Query: 171 RRVLVDVERSRT 182
R++ T
Sbjct: 85 RQITAQAWDGTT 96
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 49.2 bits (116), Expect = 1e-07
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
+ + LFI ++++T++ LR FE +G + V++ + T + RG+ F+ Y ++ +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 159 AYK 161
A
Sbjct: 64 AMN 66
Score = 48.8 bits (115), Expect = 1e-07
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
T EE + +E + A+ +S K +F+ + DT E LR
Sbjct: 56 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 115
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
FE YG I+ I ++ ++ +GK RG+AF+ ++ + ++G V
Sbjct: 116 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 174
Query: 180 SR 181
S+
Sbjct: 175 SK 176
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.7 bits (110), Expect = 1e-07
Identities = 8/81 (9%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+ + + D++ ++ + Y V + + AF+ + +A +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQ 58
Query: 162 HADGKKIDGRRVLVDVERSRT 182
G+ ++V ++ +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTDA 79
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 46.6 bits (110), Expect = 2e-07
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+TL++ ++ D +E + + F GP K M+ Y F+E+ RD +A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALA 66
Query: 162 HADGKKIDGRRVLVD 176
+G+KI G+ V V+
Sbjct: 67 AMNGRKILGKEVKVN 81
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.2 bits (109), Expect = 2e-07
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+F+ R D +E +LR F YG + + + R +AF+ + ++ S
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 60
Query: 162 HADGKKIDGRRVLVDVERSR 181
+ I G V + +
Sbjct: 61 --EDLIIKGISVHISNAEPK 78
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.3 bits (109), Expect = 2e-07
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIV-----MVHNKVTGKPRGYAFIEYEHERDM 156
+ L++ + + +E + F + + V + + +AF+E+ +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 157 HSAYKHADGKKIDGRRVLV 175
A DG G+ + +
Sbjct: 62 TQA-MAFDGIIFQGQSLKI 79
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 45.8 bits (108), Expect = 2e-07
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
L+I ++ + LR+ F + GYAF++Y + A +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 163 ADGK-KIDGRRVLVDVERSR 181
GK ++ G+ + VD S+
Sbjct: 57 LSGKVELHGKIMEVDYSVSK 76
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.9 bits (108), Expect = 3e-07
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
Query: 162 HADGKKIDGRRVLVDVERSRTVKGWLPRRLGG 193
+ +G++ GR + VD S K L G
Sbjct: 69 NLNGREFSGRALRVDNAASEKNKEELKSLGTG 100
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.1 bits (106), Expect = 5e-07
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P L++ + +TS + L REF+ +G I+ I V +A+I+YE +A
Sbjct: 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAA 69
Query: 160 YKHADGKKIDGRRVLVDVERSRTVKG 185
G + G + V+ +++
Sbjct: 70 CAKMRGFPLGGPDRRLRVDFAKSGPS 95
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 45.4 bits (107), Expect = 6e-07
Identities = 11/80 (13%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+T+F ++ L F G ++ + ++ ++ + + +G A++E+ + +
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAI 77
Query: 162 HADGKKIDGRRVLVDVERSR 181
G+++ G ++V ++
Sbjct: 78 GLTGQRLLGVPIIVQASQAE 97
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 43.6 bits (102), Expect = 1e-06
Identities = 14/70 (20%), Positives = 29/70 (41%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
L+I + T++ L + + YG I + +K T K +GY F++++ A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 164 DGKKIDGRRV 173
+ +
Sbjct: 61 KASGVQAQMA 70
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 43.9 bits (103), Expect = 1e-06
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+FI ++ L F +G I +V ++ +GY F+ +E + A +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 67
Query: 163 ADGKKIDGRRVLVDVERSR 181
+G ++ R+V V +SR
Sbjct: 68 MNGMLLNDRKVFVGRFKSR 86
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 43.9 bits (103), Expect = 2e-06
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 95 NATMDPFKTLFIARVN--YDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH 152
++L +A S ++L E G + ++M NK Y+F Y
Sbjct: 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRT 65
Query: 153 ERDMHSAYKHADGKKI-DGRRVLVDVERSRTVK 184
+ AY +GK++ D + + + K
Sbjct: 66 TEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 42.6 bits (99), Expect = 3e-06
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
LFI +N + S ++L+ + +V + TG R + ++++E D+ A
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEKAL- 71
Query: 162 HADGKKIDGRRVLVDVERSR 181
G K+ G + ++ + R
Sbjct: 72 ELTGLKVFGNEIKLEKPKGR 91
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 42.5 bits (99), Expect = 5e-06
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
KT+FI +++D+ E L + +G +K + +V + T +G AF ++ +
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 162 HA------DGKKIDGRRVLVDVERSR 181
A G K+DGR++ VD+ +R
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTR 94
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.7 bits (97), Expect = 1e-05
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
L+I+ + E +L + +G + ++ + RG F E + H
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG-TSRGVGFARMESTEKCEAVIGH 78
Query: 163 ADGKKIDGRRVLVDVERSRTVK 184
+GK I + K
Sbjct: 79 FNGKFIKTPPGVSAPTEPLLCK 100
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 41.0 bits (95), Expect = 2e-05
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
I + + ++ + + E + V V G+ G A +++++E D + +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 162 HADGKKIDGRRVLVDV---ERSRTVKGWLPRRLGGG 194
KK++GR V V E R ++ P + G
Sbjct: 69 -LHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 40.9 bits (95), Expect = 2e-05
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 11/87 (12%)
Query: 103 TLFIARVNYD-----TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMH 157
L N D + +K F Y + I + +
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAA 60
Query: 158 SAYKHADGKKIDGRRVLVDVERSRTVK 184
A + G+ + + ++ +
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIG 87
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 39.3 bits (91), Expect = 5e-05
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 102 KTLFIARVNYD-TSESKLRREF-EVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
+ + I ++ + E+ LR F K + K AF+ +E++ A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 160 YKHADGKKIDGRRVLVDVERSR 181
+ + + R + V + +
Sbjct: 65 LQ-MNRSLLGNREISVSLADKK 85
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 39.7 bits (92), Expect = 6e-05
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 102 KTLFIARVN-YDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
L ++ +N + L F + K+ + A ++ A
Sbjct: 3 SVLLVSNLNPERVTPQSLFILF-----GVYGDVQRVKILFNKKENALVQMADGNQAQLAM 57
Query: 161 KHADGKKIDGRRVLVDVERSRTVKGWLPRRLGGGLGGTR 199
H +G K+ G+ + + + + + V+ LPR G T+
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQ--LPREGQEDQGLTK 94
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.6 bits (92), Expect = 6e-05
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 111 YDTSESKLRREFEVYGPIK--KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168
Y+ +R E YG +K +I + V G F+E+ D A + G+K
Sbjct: 24 YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 83
Query: 169 DGRRVLVD 176
R V+
Sbjct: 84 ANRVVVTK 91
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.3 bits (91), Expect = 8e-05
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+ + + Y +E+ + F P++ + + G+ G A +E+ D +A
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 74
Query: 163 ADGKKIDGRRVLVDVERSRTVKGWLPR 189
D + R V + + + G P
Sbjct: 75 -DKANMQHRYVELFLNSTAGTSGSGPS 100
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 37.6 bits (86), Expect = 1e-04
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+ I + D + ++ Y K +G AF+ + +A
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-------KYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 164 DGKKIDGRRVLVDVERSRTV 183
++ R + V ++ + +
Sbjct: 54 HQSRLRERELSVQLQPTDAL 73
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 36.3 bits (83), Expect = 5e-04
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
++++I D + ++ E G + I M + +G F+ ++ +
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 162 HADGKKIDGRRVLV 175
G+K +L+
Sbjct: 66 -TPGQKYKETDLLI 78
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 34.5 bits (79), Expect = 0.002
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 113 TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172
S S + +F YG I K VM + + I Y+ + A DG+
Sbjct: 15 ASASYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKALSK-DGRIFGE-S 66
Query: 173 VLVDVERSR 181
+++ V+
Sbjct: 67 IMIGVKPCI 75
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 35.1 bits (80), Expect = 0.002
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 7/88 (7%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+ ++ + S L+ G + + + +EY + DM A +
Sbjct: 17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLRKEDMEYALRK 69
Query: 163 ADGKKIDGRRVLVDVERSRTVKGWLPRR 190
D K R + P
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSSGPSS 97
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 30.9 bits (69), Expect = 0.22
Identities = 11/103 (10%), Positives = 34/103 (33%)
Query: 243 DRERERERRRSRSRERKRRTSRSRSRDRRRRRSRERIRDDDIEEVEFRPKDRSDRDRDRD 302
D + ++ + + + + ++ + + +E + + + +
Sbjct: 190 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 249
Query: 303 RKRRRERENSEDRNERKRDRKERRKERERNNEEREEKVFIKQE 345
K +R ER K + +E+ ++E +K E
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 292
Score = 29.7 bits (66), Expect = 0.45
Identities = 7/88 (7%), Positives = 28/88 (31%)
Query: 244 RERERERRRSRSRERKRRTSRSRSRDRRRRRSRERIRDDDIEEVEFRPKDRSDRDRDRDR 303
+ + E +R+ + + R + + + +E + +R
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 271
Query: 304 KRRRERENSEDRNERKRDRKERRKERER 331
+ + + + E + + E + + +
Sbjct: 272 QEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.4 bits (57), Expect = 1.7
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+ ++ + S L+ G + + + +E+ + DM A +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-------TGVVEFVRKEDMTYAVRKL 55
Query: 164 DGKKIDGRRVLVDVERSR 181
D K R +
Sbjct: 56 DNTKFRSHEGETAYIRVK 73
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 27.8 bits (61), Expect = 2.2
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 246 RERERRRSRSRERKRRTSRSRSRDRRRRRSRERIRD--DDIEEVEFRPKDRSDRDRDRDR 303
E +RR S + + + + +RERI D+ VE +
Sbjct: 11 AELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLG 70
Query: 304 KRRREREN 311
++R +
Sbjct: 71 EKRPLGDG 78
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.7 bits (61), Expect = 2.4
Identities = 9/96 (9%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 244 RERERERRRSRSRERKRRTSRSRSRDRRRRRSRERIRDDDIEEVEFRPKDRSDRDRDRDR 303
+ ++ + ++ + + + R + ++ + + + D + + R +
Sbjct: 175 QAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAY 234
Query: 304 KRRRERENSEDRNERKRDRKERRKERERNNEEREEK 339
R+R ++ + RD + + R++ E
Sbjct: 235 AAERDRIAAQGLAPQDRDARIAQ-LRQQTFTAPGEA 269
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 25.4 bits (56), Expect = 3.2
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 125 YGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181
+ V +G+ F+E + ++ K + G R++ + +
Sbjct: 10 QQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIP-PPQMKKVMHGDRIIAVIHSEK 65
>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091)
{Thermus thermophilus [TaxId: 274]}
Length = 161
Score = 25.7 bits (57), Expect = 5.9
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 52 DTPPPTRVETREERLERRRRERAEQVAYKL 81
D P VE E R++ ++ YKL
Sbjct: 134 DGFTPLGVEDEAEVAW--RKDLLRRLGYKL 161
>d2ntka1 d.153.2.1 (A:1-202) Hypothetical protein MTH1020 {Archaeon
Methanothermobacter thermautotrophicus [TaxId: 145262]}
Length = 202
Score = 25.6 bits (56), Expect = 8.0
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 326 RKERERNNEEREEKVFIKQEPVDDYQEYDN 355
R R +EE+V + + + N
Sbjct: 25 RSFPNRTTSIQEERVAVVPVEGHERDVFRN 54
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 23.8 bits (52), Expect = 8.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 259 KRRTSRSRSRDRR 271
K++TS+S+ RR
Sbjct: 7 KKKTSKSKRDMRR 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.389
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,423,168
Number of extensions: 74261
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 137
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.7 bits)