BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16185
         (263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 37.0 bits (84), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 6  IISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWI 51
          I  S    C +C    E D  +  + PC C G+  +VHQACL +WI
Sbjct: 10 ITPSSQDICRICHC--EGDDESPLITPCHCTGSLHFVHQACLQQWI 53


>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
           Scattering Curve-Fitting And Homology Modelling
          Length = 1213

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 35  CRGTSKWVHQACLN-RWIDEKQKGNAFTQVACP 66
           CRG   W+H  C+N RW  E     A  Q+ CP
Sbjct: 763 CRGKEGWIHTVCINGRWDPEVNCSMAQIQL-CP 794


>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
           Nacl Buffer
 pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
           Nacl Buffer
 pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
           Nacl Buffer
          Length = 1213

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 35  CRGTSKWVHQACLN-RWIDEKQKGNAFTQVACP 66
           CRG   W+H  C+N RW  E     A  Q+ CP
Sbjct: 763 CRGKEGWIHTVCINGRWDPEVNCSMAQIQL-CP 794


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 8  SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWI 51
            D+  CW+C     ++R     + C C G  + VH++CL+ W+
Sbjct: 3  DEDVPVCWICNEELGNER----FRACGCTGELENVHRSCLSTWL 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.464 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,660,579
Number of Sequences: 62578
Number of extensions: 297896
Number of successful extensions: 721
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 6
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)