Query psy16185
Match_columns 263
No_of_seqs 197 out of 747
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:56:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 4.1E-19 1.4E-23 128.5 3.4 58 7-74 2-59 (60)
2 2d8s_A Cellular modulator of i 99.6 1.2E-16 4E-21 121.4 4.4 62 7-76 11-72 (80)
3 2ecl_A Ring-box protein 2; RNF 97.8 1E-05 3.5E-10 60.0 2.6 55 9-75 13-77 (81)
4 1iym_A EL5; ring-H2 finger, ub 97.8 5.6E-06 1.9E-10 56.0 0.9 53 8-73 2-54 (55)
5 2ecm_A Ring finger and CHY zin 97.7 1.5E-05 5.2E-10 53.7 2.3 53 8-73 2-54 (55)
6 2kiz_A E3 ubiquitin-protein li 97.7 2.4E-05 8.1E-10 55.4 3.2 56 9-78 12-67 (69)
7 1x4j_A Ring finger protein 38; 97.4 3.2E-05 1.1E-09 55.8 1.2 51 9-73 21-71 (75)
8 2ep4_A Ring finger protein 24; 97.4 9.4E-05 3.2E-09 52.9 3.3 52 8-73 12-63 (74)
9 1v87_A Deltex protein 2; ring- 97.4 0.00014 4.9E-09 56.1 4.5 60 8-75 22-95 (114)
10 2ct0_A Non-SMC element 1 homol 97.4 6.2E-05 2.1E-09 56.4 1.9 57 9-80 13-70 (74)
11 2ct2_A Tripartite motif protei 97.2 0.00017 5.8E-09 52.7 3.2 57 9-75 13-69 (88)
12 2l0b_A E3 ubiquitin-protein li 97.2 7.9E-05 2.7E-09 56.1 1.2 50 10-73 39-88 (91)
13 2ect_A Ring finger protein 126 97.1 9.4E-05 3.2E-09 53.4 0.7 53 9-75 13-65 (78)
14 1chc_A Equine herpes virus-1 r 97.1 0.00017 5.7E-09 50.7 1.9 51 8-74 2-52 (68)
15 3dpl_R Ring-box protein 1; ubi 97.0 0.00035 1.2E-08 55.1 3.3 56 8-75 34-102 (106)
16 2ea6_A Ring finger protein 4; 96.9 0.00021 7E-09 49.8 1.0 53 8-73 12-67 (69)
17 3ng2_A RNF4, snurf, ring finge 96.8 0.00027 9.3E-09 49.7 1.1 55 7-74 6-63 (71)
18 2xeu_A Ring finger protein 4; 96.8 0.00042 1.4E-08 47.5 1.8 52 10-74 2-56 (64)
19 4a0k_B E3 ubiquitin-protein li 96.8 0.00025 8.4E-09 57.2 0.5 57 8-75 45-113 (117)
20 2ecw_A Tripartite motif-contai 96.7 0.0014 4.7E-08 47.1 3.8 56 9-75 17-72 (85)
21 2yur_A Retinoblastoma-binding 96.5 0.00078 2.7E-08 48.5 1.6 50 10-73 14-63 (74)
22 2csy_A Zinc finger protein 183 96.5 0.0013 4.5E-08 47.8 2.8 47 10-73 14-60 (81)
23 2ecv_A Tripartite motif-contai 96.5 0.0012 4.1E-08 47.4 2.5 56 9-75 17-72 (85)
24 2ysl_A Tripartite motif-contai 96.5 0.00064 2.2E-08 48.1 1.0 52 9-74 18-69 (73)
25 1g25_A CDK-activating kinase a 96.5 0.0011 3.7E-08 46.3 2.0 53 10-74 2-55 (65)
26 1e4u_A Transcriptional repress 96.4 0.0012 4.2E-08 49.1 1.9 55 8-74 8-62 (78)
27 2djb_A Polycomb group ring fin 96.4 0.0012 4.1E-08 47.1 1.7 52 9-77 13-65 (72)
28 2d8t_A Dactylidin, ring finger 96.3 0.00078 2.7E-08 48.0 0.3 50 9-75 13-62 (71)
29 2ecn_A Ring finger protein 141 96.3 0.0004 1.4E-08 49.0 -1.3 50 8-75 12-61 (70)
30 2ysj_A Tripartite motif-contai 96.2 0.0027 9.3E-08 43.9 2.8 46 9-68 18-63 (63)
31 2ecy_A TNF receptor-associated 96.2 0.0018 6.1E-08 45.3 1.8 50 9-74 13-62 (66)
32 3lrq_A E3 ubiquitin-protein li 96.1 0.0039 1.3E-07 47.5 3.7 65 11-91 22-88 (100)
33 3ztg_A E3 ubiquitin-protein li 96.1 0.0046 1.6E-07 45.7 3.6 51 9-73 11-61 (92)
34 2ecj_A Tripartite motif-contai 96.0 0.0028 9.4E-08 42.7 2.1 46 9-68 13-58 (58)
35 1jm7_A BRCA1, breast cancer ty 95.9 0.0049 1.7E-07 46.8 3.1 51 11-75 21-71 (112)
36 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.004 1.4E-07 59.3 3.0 64 9-76 306-375 (381)
37 2y43_A E3 ubiquitin-protein li 95.6 0.0063 2.2E-07 45.7 2.6 48 11-75 22-70 (99)
38 2egp_A Tripartite motif-contai 95.6 0.0017 5.9E-08 46.4 -0.5 57 9-75 10-66 (79)
39 3fl2_A E3 ubiquitin-protein li 95.4 0.011 3.6E-07 46.4 3.5 48 11-74 52-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 95.3 0.0032 1.1E-07 48.6 0.2 56 7-75 3-61 (133)
41 1z6u_A NP95-like ring finger p 95.2 0.011 3.7E-07 48.7 3.2 49 11-75 78-126 (150)
42 2ckl_A Polycomb group ring fin 95.2 0.0054 1.9E-07 46.9 1.3 50 9-75 13-63 (108)
43 4ap4_A E3 ubiquitin ligase RNF 95.2 0.005 1.7E-07 47.5 0.9 57 7-74 68-125 (133)
44 4ayc_A E3 ubiquitin-protein li 95.1 0.0051 1.8E-07 49.3 0.9 47 11-74 53-99 (138)
45 1t1h_A Gspef-atpub14, armadill 95.0 0.007 2.4E-07 43.4 1.3 51 9-75 6-56 (78)
46 1rmd_A RAG1; V(D)J recombinati 94.6 0.02 6.9E-07 44.1 2.9 49 11-75 23-71 (116)
47 2y1n_A E3 ubiquitin-protein li 94.5 0.015 5.1E-07 55.6 2.6 49 11-75 332-380 (389)
48 1wim_A KIAA0161 protein; ring 94.5 0.021 7.1E-07 42.7 2.8 59 9-75 3-65 (94)
49 2ckl_B Ubiquitin ligase protei 94.2 0.019 6.4E-07 47.1 2.1 46 12-73 55-101 (165)
50 3hct_A TNF receptor-associated 93.6 0.023 7.7E-07 44.3 1.5 51 9-75 16-66 (118)
51 3nw0_A Non-structural maintena 92.6 0.041 1.4E-06 48.8 1.8 56 9-79 178-234 (238)
52 3l11_A E3 ubiquitin-protein li 92.4 0.012 4E-07 45.4 -1.8 48 11-74 15-62 (115)
53 1weo_A Cellulose synthase, cat 90.8 0.22 7.4E-06 39.0 3.8 57 7-73 12-69 (93)
54 2vje_A E3 ubiquitin-protein li 90.4 0.063 2.1E-06 37.8 0.4 51 8-74 5-57 (64)
55 2c2l_A CHIP, carboxy terminus 90.3 0.16 5.6E-06 43.5 3.1 50 10-75 207-256 (281)
56 1jm7_B BARD1, BRCA1-associated 90.0 0.084 2.9E-06 40.9 1.0 47 10-75 21-68 (117)
57 2yu4_A E3 SUMO-protein ligase 88.5 0.46 1.6E-05 35.6 4.1 52 9-71 5-59 (94)
58 4ic3_A E3 ubiquitin-protein li 88.3 0.047 1.6E-06 39.3 -1.5 43 11-74 24-67 (74)
59 2kr4_A Ubiquitin conjugation f 87.6 0.45 1.6E-05 35.1 3.5 49 10-75 13-61 (85)
60 2vje_B MDM4 protein; proto-onc 87.2 0.18 6.1E-06 35.3 1.0 50 9-74 5-56 (63)
61 1bor_A Transcription factor PM 86.7 0.14 4.9E-06 34.8 0.3 48 8-75 3-50 (56)
62 3knv_A TNF receptor-associated 85.7 0.077 2.6E-06 43.1 -1.8 50 9-74 29-78 (141)
63 3hcs_A TNF receptor-associated 85.4 0.3 1E-05 39.9 1.6 51 9-75 16-66 (170)
64 1wgm_A Ubiquitin conjugation f 84.5 0.45 1.5E-05 36.4 2.1 50 10-75 21-70 (98)
65 2kre_A Ubiquitin conjugation f 83.9 0.56 1.9E-05 35.9 2.4 49 10-75 28-76 (100)
66 2ku3_A Bromodomain-containing 82.2 0.55 1.9E-05 34.4 1.7 55 7-71 12-66 (71)
67 1wil_A KIAA1045 protein; ring 81.5 0.69 2.3E-05 35.9 2.1 57 10-73 14-78 (89)
68 2f42_A STIP1 homology and U-bo 80.0 1.2 4E-05 38.1 3.3 50 10-75 105-154 (179)
69 2ea5_A Cell growth regulator w 80.0 0.84 2.9E-05 32.5 2.0 48 8-75 12-59 (68)
70 2ecg_A Baculoviral IAP repeat- 73.7 1.8 6.1E-05 30.8 2.3 43 11-74 25-68 (75)
71 3c6w_A P28ING5, inhibitor of g 70.8 0.7 2.4E-05 32.6 -0.5 54 4-70 2-57 (59)
72 2l43_A N-teminal domain from h 70.0 2 6.8E-05 32.5 1.9 55 8-72 22-76 (88)
73 2ri7_A Nucleosome-remodeling f 69.1 1.1 3.7E-05 37.0 0.2 58 6-72 3-60 (174)
74 3t6p_A Baculoviral IAP repeat- 68.8 0.66 2.3E-05 43.2 -1.3 46 10-75 294-339 (345)
75 1weu_A Inhibitor of growth fam 62.1 3.1 0.0001 32.0 1.6 52 7-71 32-85 (91)
76 3htk_C E3 SUMO-protein ligase 60.6 2.8 9.7E-05 38.2 1.3 50 11-75 181-233 (267)
77 1wen_A Inhibitor of growth fam 56.1 4.9 0.00017 29.2 1.7 52 7-71 12-65 (71)
78 1wep_A PHF8; structural genomi 54.7 7 0.00024 28.5 2.4 56 8-72 9-64 (79)
79 2yt5_A Metal-response element- 53.4 3.3 0.00011 28.9 0.4 59 8-71 3-61 (66)
80 2vnf_A ING 4, P29ING4, inhibit 53.3 2.2 7.6E-05 29.9 -0.5 52 6-70 5-58 (60)
81 2yho_A E3 ubiquitin-protein li 50.2 1.9 6.4E-05 31.4 -1.4 45 11-75 18-62 (79)
82 2lri_C Autoimmune regulator; Z 50.0 2.4 8.1E-05 30.5 -0.9 49 10-71 11-59 (66)
83 2g6q_A Inhibitor of growth pro 47.9 3.6 0.00012 29.1 -0.1 52 6-70 6-59 (62)
84 2l5u_A Chromodomain-helicase-D 47.6 5.9 0.0002 27.7 0.9 51 8-71 8-58 (61)
85 1f62_A Transcription factor WS 45.8 10 0.00035 25.1 1.9 48 13-70 2-49 (51)
86 2k16_A Transcription initiatio 39.8 9 0.00031 27.4 0.9 51 12-72 19-69 (75)
87 2bay_A PRE-mRNA splicing facto 39.7 13 0.00043 25.8 1.7 45 13-74 5-50 (61)
88 2jmi_A Protein YNG1, ING1 homo 37.4 9.1 0.00031 29.3 0.6 50 8-70 23-75 (90)
89 2lbm_A Transcriptional regulat 37.0 15 0.00051 30.3 1.9 53 8-70 60-116 (142)
90 1wev_A Riken cDNA 1110020M19; 34.9 1.1 3.8E-05 33.8 -4.9 62 10-75 15-76 (88)
91 3v43_A Histone acetyltransfera 34.6 29 0.00098 26.7 3.1 38 9-49 3-43 (112)
92 4gne_A Histone-lysine N-methyl 33.2 13 0.00045 29.2 0.9 34 8-48 12-45 (107)
93 3rsn_A SET1/ASH2 histone methy 32.9 15 0.0005 31.6 1.3 51 16-70 7-58 (177)
94 3o36_A Transcription intermedi 32.1 3.1 0.00011 34.6 -3.0 51 8-71 1-51 (184)
95 2rsd_A E3 SUMO-protein ligase 30.4 1.9 6.5E-05 30.8 -4.0 54 9-70 8-64 (68)
96 1we9_A PHD finger family prote 29.0 15 0.00053 25.3 0.6 56 8-71 3-58 (64)
97 2lv9_A Histone-lysine N-methyl 25.8 28 0.00096 26.4 1.7 48 12-71 29-76 (98)
98 2vpb_A Hpygo1, pygopus homolog 24.2 29 0.001 24.6 1.4 57 8-69 5-64 (65)
99 1x4i_A Inhibitor of growth pro 23.4 42 0.0014 24.1 2.1 52 8-72 3-56 (70)
100 2xb1_A Pygopus homolog 2, B-ce 22.8 19 0.00066 27.7 0.2 57 12-73 4-63 (105)
101 3u5n_A E3 ubiquitin-protein li 22.3 4.7 0.00016 34.3 -3.8 52 8-72 4-55 (207)
102 1p7a_A BF3, BKLF, kruppel-like 22.3 38 0.0013 19.0 1.4 14 60-73 9-22 (37)
103 2kvh_A Zinc finger and BTB dom 21.3 30 0.001 18.0 0.8 12 62-73 3-14 (27)
104 1wge_A Hypothetical protein 26 21.2 89 0.0031 23.5 3.6 42 26-77 26-67 (83)
105 2bs2_C Quinol-fumarate reducta 21.1 93 0.0032 27.5 4.3 76 153-229 171-254 (256)
106 2elr_A Zinc finger protein 406 20.6 43 0.0015 18.5 1.4 14 60-73 7-20 (36)
107 1mm2_A MI2-beta; PHD, zinc fin 20.5 5.9 0.0002 27.7 -2.9 51 8-71 6-56 (61)
108 2ysm_A Myeloid/lymphoid or mix 20.1 12 0.0004 28.6 -1.6 39 7-51 3-41 (111)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=4.1e-19 Score=128.45 Aligned_cols=58 Identities=28% Similarity=0.723 Sum_probs=51.4
Q ss_pred ecCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
.+++++.||||+++++ ++|++||+|+||++|||++||++|+++++ +..||+|+++|.+
T Consensus 2 e~~~~~~CrIC~~~~~----~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEELG----NERFRACGCTGELENVHRSCLSTWLTISR------NTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEECS----CCCCCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCCC----CceecCcCCCCchhhhHHHHHHHHHHhCC------CCccCCCCCeeec
Confidence 4567899999998743 36899999999999999999999999886 6899999999986
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=121.42 Aligned_cols=62 Identities=29% Similarity=0.809 Sum_probs=54.0
Q ss_pred ecCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeecc
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVY 76 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~ 76 (263)
++++++.|+||+++.+++ ++++.||+|+|+++++|++||.+|++++. +..||+|+++|.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~--~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~------~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWIKSSD------TRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSS--SCEECSSSCCSSSCCEETTHHHHHHHHHC------CSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCC--CeeEeccccCCcCCeeCHHHHHHHHhhCC------CCCCCCCCCeeecCc
Confidence 456779999999876543 57899999999999999999999999875 679999999999864
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1e-05 Score=60.03 Aligned_cols=55 Identities=20% Similarity=0.607 Sum_probs=39.3
Q ss_pred CCCCeeeEecccCcCC----------CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDD----------RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed----------~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
.+++.|-||+++-++. .+.....| +|. ...|.+||.+|+..+ ..||+|++++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~---H~FH~~Ci~~Wl~~~--------~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN---HSFHNCCMSLWVKQN--------NRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS---CEEEHHHHHHHTTTC--------CBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeC-CCC---CccChHHHHHHHHhC--------CCCCCcCCCcchh
Confidence 4567888998776541 12234444 565 679999999999643 4899999998754
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.76 E-value=5.6e-06 Score=56.04 Aligned_cols=53 Identities=28% Similarity=0.646 Sum_probs=38.6
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
.+++..|-||+++-+++ +.....| .|. ...|.+|+.+|++. +..||+|++++.
T Consensus 2 ~~~~~~C~IC~~~~~~~-~~~~~~~-~C~---H~f~~~Ci~~w~~~--------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDG-EEARFLP-RCG---HGFHAECVDMWLGS--------HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTT-SCCEECS-SSC---CEECTTHHHHTTTT--------CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCC-CceEECC-CCC---CcccHHHHHHHHHc--------CCcCcCCCCEeE
Confidence 36778999999876543 2344455 344 56999999999853 357999999875
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.69 E-value=1.5e-05 Score=53.74 Aligned_cols=53 Identities=26% Similarity=0.545 Sum_probs=39.9
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
++++..|-||++.-.+......+.||. ...|.+|+.+|++.+ ..||+|+.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--------YRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--------CCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--------CcCCCCCCcCC
Confidence 356789999998764433345667763 569999999999854 58999998763
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=2.4e-05 Score=55.38 Aligned_cols=56 Identities=23% Similarity=0.663 Sum_probs=40.9
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeeccCC
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYPY 78 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~P~ 78 (263)
+++..|-||++.-.+. ......||. ...|..|+.+|+..+ ..||+|+.++....|.
T Consensus 12 ~~~~~C~IC~~~~~~~-~~~~~~~C~-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEG-EDVRRLPCM-----HLFHQVCVDQWLITN--------KKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSS-SCEEECTTS-----CEEEHHHHHHHHHHC--------SBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCC-CcEEEeCCC-----CHHHHHHHHHHHHcC--------CCCcCcCccccCcCCC
Confidence 4568899998765432 234556653 568999999999753 3599999998876654
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=3.2e-05 Score=55.76 Aligned_cols=51 Identities=29% Similarity=0.737 Sum_probs=37.5
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
+++..|-||+++-.+. +.....||. ...|.+|+.+|+..+ ..||+|++++.
T Consensus 21 ~~~~~C~IC~~~~~~~-~~~~~l~C~-----H~fh~~Ci~~w~~~~--------~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESR-QLLRVLPCN-----HEFHAKCVDKWLKAN--------RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBT-CEEEEETTT-----EEEETTHHHHHHHHC--------SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCC-CeEEEECCC-----CHhHHHHHHHHHHcC--------CcCcCcCCcCC
Confidence 4568999999876542 233456653 569999999999743 47999999874
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=9.4e-05 Score=52.91 Aligned_cols=52 Identities=27% Similarity=0.735 Sum_probs=37.7
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
.+++..|-||++.-.+. ....+.|| . ...|..|+.+|++.+ ..||+|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~~~~C--~---H~f~~~Ci~~~~~~~--------~~CP~Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPR-DELGICPC--K---HAFHRKCLIKWLEVR--------KVCPLCNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSS-SCEEEETT--T---EEEEHHHHHHHHHHC--------SBCTTTCCBCS
T ss_pred CCCCCCCcCCCcccCCC-CcEEEcCC--C---CEecHHHHHHHHHcC--------CcCCCcCcccc
Confidence 44578999999886542 22223364 4 669999999999753 38999999975
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.39 E-value=0.00014 Score=56.06 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=40.4
Q ss_pred cCCCCeeeEecccCcCCC-----------CC-cc--eeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 8 SSDLKYCWVCFATHEDDR-----------NA-LW--VQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~-----------~~-~~--v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
..++..|-||++.-++.. +. .. ..||. ...|..||.+|+.... ......||+|++.|.
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~---~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGN---KDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTC---CSSCCBCTTTCCBSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHccc---CCCCCcCCCCCCccC
Confidence 344579999988754321 00 11 44553 6799999999996532 123679999999997
Q ss_pred ec
Q psy16185 74 IV 75 (263)
Q Consensus 74 i~ 75 (263)
..
T Consensus 94 ~~ 95 (114)
T 1v87_A 94 EK 95 (114)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 10
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=6.2e-05 Score=56.37 Aligned_cols=57 Identities=23% Similarity=0.631 Sum_probs=42.2
Q ss_pred CCCCeeeEecccCcCCCCCcceecc-CCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeeccCCcc
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPC-LCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYPYRG 80 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC-~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~P~~~ 80 (263)
+..+.|-||++.-..+ . -| .|. .-.|..|+.+|++.++ +..||+|++++....|+.+
T Consensus 13 ~~i~~C~IC~~~i~~g---~---~C~~C~---h~fH~~Ci~kWl~~~~------~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG---Q---SCETCG---IRMHLPCVAKYFQSNA------EPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSSCBCSSSCCBCSSS---E---ECSSSC---CEECHHHHHHHSTTCS------SCCCTTTCSCCCSCCCCCC
T ss_pred CCCCcCcchhhHcccC---C---ccCCCC---chhhHHHHHHHHHhcC------CCCCCCCcCcCCCCCCCCC
Confidence 4458899998876532 1 23 554 5689999999996543 4789999999988766544
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.00017 Score=52.69 Aligned_cols=57 Identities=18% Similarity=0.458 Sum_probs=42.2
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++...|-||++.-.++...+...|| . ...|.+|+.+|++.+. ....||.|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~C--g---H~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHC--G---HTICRQCLEKLLASSI-----NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSS--S---CEEEHHHHHHHHHHCS-----SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCC--C---ChhhHHHHHHHHHcCC-----CCcCCCCCCCcccch
Confidence 3467899999877654223566665 3 5689999999998653 268999999998653
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.22 E-value=7.9e-05 Score=56.13 Aligned_cols=50 Identities=20% Similarity=0.651 Sum_probs=36.8
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
++..|-||+++-.++ +.....|| . ...|..|+.+|+.. +..||+|+.++.
T Consensus 39 ~~~~C~IC~~~~~~~-~~~~~l~C--~---H~Fh~~Ci~~wl~~--------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG-DVATELPC--H---HYFHKPCVSIWLQK--------SGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTT-CEEEEETT--T---EEEEHHHHHHHHTT--------TCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCC-CcEEecCC--C---ChHHHHHHHHHHHc--------CCcCcCcCccCC
Confidence 467899999876542 23445665 4 66999999999953 348999999864
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.12 E-value=9.4e-05 Score=53.42 Aligned_cols=53 Identities=21% Similarity=0.527 Sum_probs=38.2
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+++..|-||++.-.+. ....+.|| . ...|..|+.+|++. ...||+|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~~~~C--~---H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALG-ESVRQLPC--N---HLFHDSCIVPWLEQ--------HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTT-SCEEECTT--S---CEEETTTTHHHHTT--------TCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCC-CCEEEeCC--C---CeecHHHHHHHHHc--------CCcCcCcCCccCCc
Confidence 3468999998876532 23334565 3 56999999999953 35899999998754
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.12 E-value=0.00017 Score=50.66 Aligned_cols=51 Identities=24% Similarity=0.613 Sum_probs=38.7
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
++++..|-||++...+ .....||. ...|.+|+.+|+.. ...||.|+.++.-
T Consensus 2 ~~~~~~C~IC~~~~~~---~~~~~~C~-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 2 ATVAERCPICLEDPSN---YSMALPCL-----HAFCYVCITRWIRQ--------NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCCSSCCSCCCS---CEEETTTT-----EEESTTHHHHHHHH--------SCSTTTTCCCCCC
T ss_pred CCCCCCCeeCCccccC---CcEecCCC-----CeeHHHHHHHHHhC--------cCcCcCCChhhHh
Confidence 5678899999887543 23566754 45899999999964 3589999999764
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.03 E-value=0.00035 Score=55.05 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=37.9
Q ss_pred cCCCCeeeEecccCcCC------------C-CCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 8 SSDLKYCWVCFATHEDD------------R-NALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed------------~-~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+.+++.|-||++.-++. . +...+. -+|. ...|..|+.+|+.. +..||+|+.+|.+
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~-~~C~---H~FH~~Ci~~Wl~~--------~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW-GVCN---HAFHFHCISRWLKT--------RQVCPLDNREWEF 101 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEE-ETTS---CEEEHHHHHHHHTT--------CSBCSSSCSBCCE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEee-cccC---cEECHHHHHHHHHc--------CCcCcCCCCccee
Confidence 34567899998765432 0 111222 2465 77999999999864 3589999999875
Q ss_pred c
Q psy16185 75 V 75 (263)
Q Consensus 75 ~ 75 (263)
.
T Consensus 102 ~ 102 (106)
T 3dpl_R 102 Q 102 (106)
T ss_dssp E
T ss_pred e
Confidence 4
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00021 Score=49.84 Aligned_cols=53 Identities=19% Similarity=0.389 Sum_probs=37.6
Q ss_pred cCCCCeeeEecccCcCC---CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 8 SSDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed---~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
.++...|-||++.-.+. .......||. ...|.+|+.+|+.. ...||+|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--------ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--------CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--------CCCCCCCCCccC
Confidence 34568899998875431 1122456663 56899999999975 358999999874
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.85 E-value=0.00027 Score=49.71 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=39.6
Q ss_pred ecCCCCeeeEecccCcCC---CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 7 ISSDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed---~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
..+++..|-||++.-.+. .......||. ...|.+|+.+|++.+ ..||+|+.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--------NTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--------CCCCCCCCccCh
Confidence 456778999999775431 1222556654 559999999999743 589999999864
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.82 E-value=0.00042 Score=47.54 Aligned_cols=52 Identities=17% Similarity=0.390 Sum_probs=37.2
Q ss_pred CCCeeeEecccCcCC---CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 10 DLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 10 e~~~CrIC~~~eeed---~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
++..|-||++.-.+. .......||. ...|.+|+.+|++. +..||+|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--------ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--------CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--------CCCCCCCCccCCc
Confidence 567899998875431 1222455654 55899999999975 3589999998753
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.79 E-value=0.00025 Score=57.24 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=2.0
Q ss_pred cCCCCeeeEecccCcCC------------CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 8 SSDLKYCWVCFATHEDD------------RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed------------~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+.+.+.|-||+++-++. .+...+..-.|. ...|..|+.+|+..+ ..||+|+.+|.+.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~---H~FH~~CI~~Wl~~~--------~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN---HAFHFHCISRWLKTR--------QVCPLDNREWEFQ 113 (117)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcC---ceEcHHHHHHHHHcC--------CcCCCCCCeeeee
Confidence 34568899998775431 011122222555 679999999999753 4799999998653
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.68 E-value=0.0014 Score=47.12 Aligned_cols=56 Identities=18% Similarity=0.393 Sum_probs=40.8
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+++..|-||++.-.+ +...|| . ..+|..|+.+|+..+. +......||.|+.++...
T Consensus 17 ~~~~~C~IC~~~~~~----p~~~~C--g---H~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE----PVSADC--N---HSFCRACITLNYESNR--NTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS----CEECTT--S---CCBCHHHHHHHHHHSB--CTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc----ceeCCC--C---CHHHHHHHHHHHHhcc--CCCCCCCCCCCCCcCCHH
Confidence 356789999877543 456665 3 4589999999998753 122368999999998754
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.53 E-value=0.00078 Score=48.54 Aligned_cols=50 Identities=22% Similarity=0.494 Sum_probs=37.0
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
++..|-||++.-. ++...| .|. ...|..|+.+|+..++ ...||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~-~Cg---H~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMT----DAVVIP-CCG---NSYCDECIRTALLESD------EHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCT----TCEECS-SSC---CEECTTHHHHHHHHSS------SSCCSSSCCSSC
T ss_pred CCCCCcCCChHHh----CCeEcC-CCC---CHHHHHHHHHHHHhcC------CCcCCCCCCcCC
Confidence 4578999987654 345566 133 5589999999998754 579999999754
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0013 Score=47.79 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=36.3
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
++..|-||++.-. ++.+.||. ...|..|+.+|+.. ...||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ----NPVVTKCR-----HYFCESCALEHFRA--------TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC----SEEECTTS-----CEEEHHHHHHHHHH--------CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc----CeeEccCC-----CHhHHHHHHHHHHC--------CCcCCCcCcccc
Confidence 4568999987764 35566664 45799999999964 358999999986
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.0012 Score=47.42 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++...|-||++.-.+ +...||. ...|..|+.+|+..+.. ......||.|+.++...
T Consensus 17 ~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ----PLSLDCG-----HSFCQACLTANHKKSML--DKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSS----CBCCSSS-----CCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCC----ceeCCCC-----CHHHHHHHHHHHHHhhc--CCCCCcCCCCCCccCHH
Confidence 456899999887643 3445654 44899999999987432 12368999999998754
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.00064 Score=48.12 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=38.2
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+++..|-||++.-.+ +...|| . ...|.+|+.+|++... ....||+|+.++..
T Consensus 18 ~~~~~C~IC~~~~~~----~~~~~C--g---H~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQK----PVTIDC--G---HNFCLKCITQIGETSC-----GFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSS----EEECTT--C---CEEEHHHHHHHCSSSC-----SCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCC----eEEcCC--C---ChhhHHHHHHHHHcCC-----CCCCCCCCCCcCCc
Confidence 456799999986542 445555 3 5589999999997322 36799999999764
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.47 E-value=0.0011 Score=46.34 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=36.4
Q ss_pred CCCeeeEecccCcCCCCC-cceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 10 DLKYCWVCFATHEDDRNA-LWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~-~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
++..|-||+++...++.. ....||.=. .|.+|+.+|+... ...||+|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~-----fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-----LCESCVDLLFVRG-------AGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCC-----EEHHHHHHHHHTT-------SSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCH-----hHHHHHHHHHHcC-------CCcCCCCCCcccc
Confidence 467899999832222112 245676544 8999999998642 4689999999864
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.37 E-value=0.0012 Score=49.09 Aligned_cols=55 Identities=24% Similarity=0.508 Sum_probs=41.8
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
.+++..|-||++.-+. ....+.||.|. ..+++.|+.++.++ ....||+|+.+|.-
T Consensus 8 ~~~~~~CpICle~~~~--~d~~~~p~~CG---H~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI--DDINFFPCTCG---YQICRFCWHRIRTD-------ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCT--TTTTCCSSTTS---CCCCHHHHHHHTTS-------SCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcc--ccccccccCCC---CCcCHHHHHHHHhc-------CCCCCCCCCCccCC
Confidence 3567899999986542 24567899997 55899999988643 25799999999874
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0012 Score=47.11 Aligned_cols=52 Identities=23% Similarity=0.456 Sum_probs=37.7
Q ss_pred CCCCeeeEecccCcCCCCCcce-eccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeeccC
Q psy16185 9 SDLKYCWVCFATHEDDRNALWV-QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYP 77 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v-~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~P 77 (263)
+++..|.||++.-.+ +.. .||. ...|..|+.+|++. ...||+|+.++....+
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLID----ATTITECL-----HTFCKSCIVRHFYY--------SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSS----CEECSSSC-----CEECHHHHHHHHHH--------CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHC----cCEECCCC-----CHHHHHHHHHHHHc--------CCcCCCcCcccCcccc
Confidence 345789999876543 333 3664 45899999999964 3689999999875543
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.00078 Score=47.98 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+++..|-||++... ++...|| . ...|..|+.+|+.. ...||+|+.++...
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~C--g---H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPC--K---HVFCYLCVKGASWL--------GKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETT--T---EEEEHHHHHHCTTC--------SSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccC----CCEEccC--C---CHHHHHHHHHHHHC--------CCcCcCcCchhCHh
Confidence 35678999987653 3455665 3 55899999999953 36899999998643
No 29
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.0004 Score=49.04 Aligned_cols=50 Identities=26% Similarity=0.711 Sum_probs=38.1
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
.++...|.||++...+ ...||. ...|..|+.+|+. + ...||+|+.++.-.
T Consensus 12 ~~~~~~C~IC~~~~~~-----~~~~Cg-----H~fc~~Ci~~~~~--~------~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-----LILPCA-----HSFCQKCIDKWSD--R------HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS-----EEETTT-----EEECHHHHHHSSC--C------CSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC-----cccCCC-----CcccHHHHHHHHH--C------cCcCCCcCCcccCC
Confidence 3456899999887542 567763 5589999999986 2 57899999987643
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.0027 Score=43.88 Aligned_cols=46 Identities=15% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccC
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 68 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqC 68 (263)
+++..|-||++.-.+ +...|| . ...|..|+.+|++.+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~----p~~~~C--g---H~fC~~Ci~~~~~~~~-----~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK----PVTIDC--G---HNFCLKCITQIGETSC-----GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS----CEECTT--S---SEECHHHHHHHHHHCS-----SCCCCSCC
T ss_pred ccCCCCCcCCchhCC----eEEeCC--C---CcchHHHHHHHHHcCC-----CCCcCcCC
Confidence 456899999877543 455565 3 5589999999998632 25789998
No 31
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.0018 Score=45.31 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=36.2
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+++..|-||++.-.+ +...||. ...|..|+.+|++. . ...||+|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~-~------~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS----PKQTECG-----HRFCESCMAALLSS-S------SPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS----CCCCSSS-----CCCCHHHHHHHHTT-S------SCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC----eeECCCC-----CHHHHHHHHHHHHh-C------cCCCCCCCcCCCh
Confidence 456789999877543 3344553 44899999999962 1 5689999998753
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.14 E-value=0.0039 Score=47.47 Aligned_cols=65 Identities=22% Similarity=0.562 Sum_probs=43.4
Q ss_pred CCeeeEecccCcCCCCCcce-eccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeeccC-CcchHHHHHHH
Q psy16185 11 LKYCWVCFATHEDDRNALWV-QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYP-YRGLLVSLLDT 88 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v-~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~P-~~~~l~~lle~ 88 (263)
+-.|-||++.-.+ +.. .||. ...|..|+.+|+..+. ..||+|+.++....- +...+..+.+.
T Consensus 22 ~~~C~IC~~~~~~----p~~~~~Cg-----H~FC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 22 VFRCFICMEKLRD----ARLCPHCS-----KLCCFSCIRRWLTEQR-------AQCPHCRAPLQLRELVNCRWAEEVTQQ 85 (100)
T ss_dssp HTBCTTTCSBCSS----EEECTTTC-----CEEEHHHHHHHHHHTC-------SBCTTTCCBCCGGGCEECTTHHHHHHH
T ss_pred CCCCccCCccccC----ccccCCCC-----ChhhHHHHHHHHHHCc-------CCCCCCCCcCCHHHhHhhHHHHHHHHH
Confidence 4689999887643 444 6654 4589999999998652 689999999875432 11223344444
Q ss_pred HHH
Q psy16185 89 IDT 91 (263)
Q Consensus 89 vdr 91 (263)
+++
T Consensus 86 ~~~ 88 (100)
T 3lrq_A 86 LDT 88 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.06 E-value=0.0046 Score=45.74 Aligned_cols=51 Identities=24% Similarity=0.572 Sum_probs=38.2
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
+++-.|-||++.-. ++...|| |. ...+..|+.+|+..+. ...||+|+.++.
T Consensus 11 ~~~~~C~IC~~~~~----~p~~~~~-Cg---H~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT----DAVVIPC-CG---NSYCDECIRTALLESD------EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS----SCEECTT-TC---CEECHHHHHHHHHHCT------TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc----CceECCC-CC---CHHHHHHHHHHHHhcC------CCcCcCCCCcCC
Confidence 35678999987654 3566662 33 4578999999998654 579999999974
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.0028 Score=42.72 Aligned_cols=46 Identities=24% Similarity=0.632 Sum_probs=33.1
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccC
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 68 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqC 68 (263)
+++..|-||++.-.+ +...||. ...|.+|+.+|+++.+ ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~~-----~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE----PVIIECG-----HNFCKACITRWWEDLE-----RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS----CCCCSSC-----CCCCHHHHHHHTTSSC-----CSCCCSCC
T ss_pred ccCCCCccCCcccCc----cEeCCCC-----CccCHHHHHHHHHhcC-----CCCCCCCC
Confidence 456899999887653 3445653 4489999999986422 26789988
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.86 E-value=0.0049 Score=46.85 Aligned_cols=51 Identities=16% Similarity=0.428 Sum_probs=37.6
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
...|-||++.-.+ +...||. ...|..|+.+|+..+. ....||+|+.++...
T Consensus 21 ~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE----PVSTKCD-----HIFCKFCMLKLLNQKK-----GPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS----CCBCTTS-----CCCCSHHHHHHHHSSS-----SSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC----eEECCCC-----CHHHHHHHHHHHHhCC-----CCCCCcCCCCcCCHh
Confidence 4689999886543 4455653 5589999999998543 257999999998754
No 36
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.84 E-value=0.004 Score=59.30 Aligned_cols=64 Identities=25% Similarity=0.583 Sum_probs=43.5
Q ss_pred CCCCeeeEecccCcCCCCCcceecc---CCCCCCccccHHHHHHHHHHhccCCC---CCCcccccCCcceeecc
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPC---LCRGTSKWVHQACLNRWIDEKQKGNA---FTQVACPQCNTKYFIVY 76 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC---~C~GS~k~VHq~CL~rWI~esq~~n~---~~~~~CeqCk~eY~i~~ 76 (263)
++...|-||++...+++ .--...| +|. +..|..||.+|++....++. .....||.|++++...+
T Consensus 306 e~~~ECaICys~~l~~g-~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGG-EVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTC-CCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCC-CCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 34578999999876531 2223446 476 77999999999987643211 22358999999887544
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.55 E-value=0.0063 Score=45.74 Aligned_cols=48 Identities=19% Similarity=0.487 Sum_probs=35.8
Q ss_pred CCeeeEecccCcCCCCCccee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~-PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+..|-||++.-.+ +... ||. ...|..|+.+|+.. ...||.|+.++...
T Consensus 22 ~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI----AMIIPQCS-----HNYCSLCIRKFLSY--------KTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS----EEECTTTC-----CEEEHHHHHHHHTT--------CCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC----cCEECCCC-----CHhhHHHHHHHHHC--------CCCCCCCCCcCChh
Confidence 4689999877543 3333 554 45899999999973 36899999998754
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=95.55 E-value=0.0017 Score=46.42 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=40.3
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+++..|-||++.-.+ +...|| . ...|.+|+.+|++.+.. +......||+|+.++...
T Consensus 10 ~~~~~C~IC~~~~~~----p~~l~C--g---H~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE----PLSLDC--G---HSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS----CCCCSS--S---CCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC----eeECCC--C---CHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCHh
Confidence 456899999887643 344565 3 45899999999975421 123467999999998753
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.42 E-value=0.011 Score=46.37 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+-.|-||++.-. .+...||. ...|..|+.+|+..+ ...||+|+.++..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQ-----HNVCKDCLDRSFRAQ-------VFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTS-----CEEEHHHHHHHHHTT-------CCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCC-----CcccHHHHHHHHhHC-------cCCCCCCCccCCC
Confidence 467999987754 34555653 448999999999832 4699999999875
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.31 E-value=0.0032 Score=48.58 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=38.5
Q ss_pred ecCCCCeeeEecccCcCC---CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 7 ISSDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed---~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+..++..|-||++.-.+. .......||. ...|.+|+.+|++. +..||+|+.++...
T Consensus 3 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--------ANTCPTCRKKINHK 61 (133)
T ss_dssp --CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTT--------CSBCTTTCCBCTTT
T ss_pred cCCCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHh--------CCCCCCCCCcCccc
Confidence 356778999998775431 1223556664 55899999999963 34899999988643
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=48.65 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
...|-||++.-. .+...||. ...+..|+.+|+... ...||+|+.++...
T Consensus 78 ~~~C~IC~~~~~----~pv~~~Cg-----H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTTECF-----HNVCKDCLQRSFKAQ-------VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS----SEEECTTS-----CEEEHHHHHHHHHTT-------CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc----CCEEcCCC-----CchhHHHHHHHHHhC-------CCcCCCCCccCCCC
Confidence 468999987654 35566664 448999999999742 46899999998765
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.22 E-value=0.0054 Score=46.92 Aligned_cols=50 Identities=20% Similarity=0.479 Sum_probs=37.4
Q ss_pred CCCCeeeEecccCcCCCCCccee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~-PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+++..|-||++.-.+ +... ||. ...|..|+.+|++. ...||+|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID----ATTIIECL-----HSFCKTCIVRYLET--------SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS----EEEETTTC-----CEEEHHHHHHHHTS--------CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC----cCEeCCCC-----ChhhHHHHHHHHHh--------CCcCcCCCcccccc
Confidence 456789999877543 4444 664 44899999999963 36899999998754
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.16 E-value=0.005 Score=47.49 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=38.4
Q ss_pred ecCCCCeeeEecccCcCC-CCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 7 ISSDLKYCWVCFATHEDD-RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed-~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
.+++...|-||++.-.+. .......-.+|. ...|.+|+.+|++. +..||+|+.++..
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg---H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECG---HVFCSQCLRDSLKN--------ANTCPTCRKKINH 125 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTS---BEEEHHHHHHHHHH--------CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCC---ChhhHHHHHHHHHc--------CCCCCCCCCcCCh
Confidence 356678899998765431 011222233454 67999999999974 3589999999863
No 44
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.11 E-value=0.0051 Score=49.33 Aligned_cols=47 Identities=19% Similarity=0.517 Sum_probs=35.6
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+-.|-||++.-. .+...||. ...|..|+.+|+.. +..||+|+.++.-
T Consensus 53 ~~~C~iC~~~~~----~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI----EAVTLNCA-----HSFCSYCINEWMKR--------KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS----SEEEETTS-----CEEEHHHHHHHTTT--------CSBCTTTCCBCCC
T ss_pred cCCCcccCcccC----CceECCCC-----CCccHHHHHHHHHc--------CCcCCCCCCcCCC
Confidence 457999987754 35666763 56899999999863 3579999998753
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.01 E-value=0.007 Score=43.38 Aligned_cols=51 Identities=10% Similarity=0.318 Sum_probs=38.1
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
.++-.|-||++.-. ++...||. ...+..|+.+|++.. ...||+|+.++...
T Consensus 6 ~~~~~C~IC~~~~~----~Pv~~~Cg-----H~fc~~Ci~~~~~~~-------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMK----DPVIVSTG-----QTYERSSIQKWLDAG-------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCS----SEEEETTT-----EEEEHHHHHHHHTTT-------CCBCTTTCCBCSSC
T ss_pred cccCCCCCcccccc----CCEEcCCC-----CeecHHHHHHHHHHC-------cCCCCCCcCCCChh
Confidence 45678999987654 35666653 558999999999632 57899999998654
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=94.56 E-value=0.02 Score=44.12 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=37.0
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+..|-||++.-.+ +...||. ...|..|+.+|++.+ ...||+|+.++...
T Consensus 23 ~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD----PVETSCK-----HLFCRICILRCLKVM-------GSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS----EEECTTS-----CEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC----cEEcCCC-----CcccHHHHHHHHhHC-------cCcCCCCCCCCCHh
Confidence 4689999877543 4555653 558999999999864 35899999998754
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.53 E-value=0.015 Score=55.55 Aligned_cols=49 Identities=20% Similarity=0.626 Sum_probs=38.1
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
...|-||++... .+...||.-. .|..|+.+|+... ...||+|+.++...
T Consensus 332 ~~~C~ICle~~~----~pv~lpCGH~-----FC~~Ci~~wl~~~-------~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK----DVKIEPCGHL-----MCTSCLTSWQESE-------GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC----CEEEETTCCE-----ECHHHHHHHHHHT-------CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC----CeEEeCCCCh-----hhHHHHHHHHhcC-------CCCCCCCCCccCCc
Confidence 368999987753 3577887654 6999999999742 46899999998654
No 48
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.50 E-value=0.021 Score=42.73 Aligned_cols=59 Identities=20% Similarity=0.467 Sum_probs=40.3
Q ss_pred CCCCeeeEecccCcCCCCCcce--eccCCCCCCccccHHHHHHHHHHhccCCCCCCccccc--CCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWV--QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ--CNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v--~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~Ceq--Ck~eY~i~ 75 (263)
++...|-||+++-.+ ...+ .||.-. .-.+||.+++..+-+.+......||. |+..+.+.
T Consensus 3 ~~~~~C~IC~~~~~~---~~~~~l~~CgH~-----FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~ 65 (94)
T 1wim_A 3 SGSSGCKLCLGEYPV---EQMTTIAQCQCI-----FCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65 (94)
T ss_dssp CSBCCCSSSCCCCBG---GGEEEETTTTEE-----EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEEC
T ss_pred CCCcCCcccCccccc---ccceEcCCCCCc-----ccHHHHHHHHHHHhhcCCcccccCccccCCCCCccC
Confidence 456789999987543 2333 367544 88999999998763322234689999 99986443
No 49
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.17 E-value=0.019 Score=47.08 Aligned_cols=46 Identities=17% Similarity=0.492 Sum_probs=34.4
Q ss_pred CeeeEecccCcCCCCCccee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 12 KYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 12 ~~CrIC~~~eeed~~~~~v~-PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
..|-||++.-.+ +... || . ...|..|+.+|+... ...||.|+.++.
T Consensus 55 ~~C~IC~~~~~~----p~~~~~C--g---H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKEC--L---HRFCADCIITALRSG-------NKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTT--C---CEEEHHHHHHHHHTT-------CCBCTTTCCBCC
T ss_pred CCCcccChHhhC----cCEeCCC--C---ChhHHHHHHHHHHhC-------cCCCCCCCCcCC
Confidence 489999877543 3333 54 3 568999999999842 468999999985
No 50
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.61 E-value=0.023 Score=44.26 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=38.0
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++.-.|-||++.-. .+...|| . ...+..|+.+|+..+. ..||+|+.++...
T Consensus 16 ~~~~~C~IC~~~~~----~p~~~~C--g---H~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALR----EAVQTPC--G---HRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCS----SEEECTT--S---CEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhc----CeEECCc--C---ChhhHHHHHHHHhhCC-------CCCCCCCCCcCHH
Confidence 34568999986654 3455554 4 5589999999998763 3899999998754
No 51
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.59 E-value=0.041 Score=48.84 Aligned_cols=56 Identities=23% Similarity=0.589 Sum_probs=41.1
Q ss_pred CCCCeeeEecccCcCCCCCcceeccC-CCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeeccCCc
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYPYR 79 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~-C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~P~~ 79 (263)
+.-+.|-||.+--.. -.-|. |. .-.|..|+.+|++..+ ...||.|+.++....|..
T Consensus 178 ~~i~~C~iC~~iv~~------g~~C~~C~---~~~H~~C~~~~~~~~~------~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 178 DAVKICNICHSLLIQ------GQSCETCG---IRMHLPCVAKYFQSNA------EPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TTCCBCTTTCSBCSS------CEECSSSC---CEECHHHHHHHTTTCS------SCBCTTTCCBCCSCCCCC
T ss_pred CCCCcCcchhhHHhC------CcccCccC---hHHHHHHHHHHHHhCC------CCCCCCCCCCCCCCCCCC
Confidence 346889999876542 13343 55 4589999999996543 679999999998777754
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=92.42 E-value=0.012 Score=45.43 Aligned_cols=48 Identities=17% Similarity=0.457 Sum_probs=36.0
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+-.|-||++.-. .+...||. ...|..|+.+|++.. ...||+|+.++..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCN-----HTLCKPCFQSTVEKA-------SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTS-----CEECHHHHCCCCCTT-------TSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCC-----CHHhHHHHHHHHhHC-------cCCCCCCCcccCc
Confidence 467999987654 34556664 458999999999632 4789999999864
No 53
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.76 E-value=0.22 Score=38.99 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=39.3
Q ss_pred ecCCCCeeeEecccCcCCCCCcceeccC-CCCCCccccHHHHHHHHHHhccCCCCCCcccccCCccee
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~PC~-C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~ 73 (263)
++.+..+|.||-++-.-+.+.+.+--|+ |. --|=+.|+..=+++. +..|||||++|.
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErkeG-------~q~CpqCktrYk 69 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERREG-------TQNCPQCKTRYK 69 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHHTS-------CSSCTTTCCCCC
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHhcc-------CccccccCCccc
Confidence 3446689999966644333455555554 33 347789998877654 579999999996
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=90.35 E-value=0.063 Score=37.83 Aligned_cols=51 Identities=12% Similarity=0.296 Sum_probs=34.8
Q ss_pred cCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
++++..|-||++...+ ..+- ||.=. ..=.+|..+|.+. ...||+|+.++.-
T Consensus 5 ~~~~~~C~IC~~~~~~----~~~~~~pCgH~----~~C~~C~~~~~~~--------~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKN----GCIVHGKTGHL----MACFTCAKKLKKR--------NKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSC----EEEEETTEEEE----EECHHHHHHHHHT--------TCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCC----EEEECCCCCCh----hhHHHHHHHHHHc--------CCcCCCcCcchhc
Confidence 4567889999987643 3443 87421 1236999999863 3589999998753
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.26 E-value=0.16 Score=43.51 Aligned_cols=50 Identities=8% Similarity=-0.006 Sum_probs=37.1
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+.-.|-||++--. .|.+.||. .-.-+.|+.+|++++. ..||+|+.++...
T Consensus 207 ~~~~c~i~~~~~~----dPv~~~~g-----h~f~~~~i~~~~~~~~-------~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMR----EPCITPSG-----ITYDRKDIEEHLQRVG-------HFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCS----SEEECSSC-----CEEETTHHHHHHHHTC-------SSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhc----CCeECCCC-----CEECHHHHHHHHHHCC-------CCCcCCCCCCchh
Confidence 4568999987754 47888873 2356899999998653 2399999998644
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.04 E-value=0.084 Score=40.90 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=34.8
Q ss_pred CCCeeeEecccCcCCCCCccee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~-PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++-.|-||++.-.+ +... ||. ...+..|+.+|+. ..||+|+.++...
T Consensus 21 ~~~~C~IC~~~~~~----pv~~~~Cg-----H~fC~~Ci~~~~~----------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE----PVCLGGCE-----HIFCSNCVSDCIG----------TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS----CBCCCSSS-----CCBCTTTGGGGTT----------TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC----ccEeCCCC-----CHHHHHHHHHHhc----------CCCcCCCCcCccc
Confidence 45789999876543 4444 653 4578999999975 5799999998644
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.49 E-value=0.46 Score=35.63 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=36.4
Q ss_pred CCCCeeeEecccCcCCCCCcceec-cCCCCCCccccHHHHHHHHHHhccCCCCCCccccc--CCcc
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQP-CLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ--CNTK 71 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~P-C~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~Ceq--Ck~e 71 (263)
.++-.|-||++--. ++.+.| |.= -.-+.|+.+|+++.+. ......||+ |..+
T Consensus 5 ~~~~~CPI~~~~~~----dPV~~~~cGh-----~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK----KPVKNKVCGH-----TYEEDAIVRMIESRQK--RKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS----SEEEESSSCC-----EEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc----CCEEcCCCCC-----eecHHHHHHHHHHccC--cCCCCCCCcCcCccc
Confidence 45678999986644 367775 643 3678999999987531 113578999 9876
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=88.33 E-value=0.047 Score=39.35 Aligned_cols=43 Identities=26% Similarity=0.545 Sum_probs=32.6
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~-VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+..|.||++... ++...||. .. ....|+.+| ..||+|+.++.-
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCg-----H~~~C~~C~~~~------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCG-----HLVTCKQCAEAV------------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTC-----CBCCCHHHHTTC------------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcCCC-----ChhHHHHhhhcC------------ccCCCcCcCccC
Confidence 478999997653 45667763 44 788999887 589999998764
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=87.62 E-value=0.45 Score=35.14 Aligned_cols=49 Identities=8% Similarity=-0.175 Sum_probs=36.9
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++-.|-||++--. .+.+.||. .-.-+.|+.+|++. ...||+|+.++...
T Consensus 13 ~~~~CpI~~~~m~----dPV~~~cG-----htf~r~~I~~~l~~--------~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMT----DPVRLPSG-----TVMDRSIILRHLLN--------SPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCS----SEEECTTS-----CEEEHHHHHHHHHH--------CSBCTTTCCBCCGG
T ss_pred hheECcccCchhc----CCeECCCC-----CEECHHHHHHHHhc--------CCCCCCCcCCCChH
Confidence 4578889976644 47788863 33679999999984 35899999998754
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=87.25 E-value=0.18 Score=35.34 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=34.0
Q ss_pred CCCCeeeEecccCcCCCCCcce--eccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 9 SDLKYCWVCFATHEDDRNALWV--QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v--~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+++..|-||++...+ ..+ .||.=. .+-.+|..+|.+. ...||+|+.++.-
T Consensus 5 ~~~~~C~IC~~~~~~----~~~~~~pCgH~----~~C~~C~~~~~~~--------~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD----GNIIHGRTGHL----VTCFHCARRLKKA--------GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSC----EEEEETTEEEE----EECHHHHHHHHHT--------TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCC----eEEEecCCCCH----hHHHHHHHHHHHh--------CCcCCCcCchhhc
Confidence 456899999987643 233 376411 1357999998753 3689999998753
No 61
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.74 E-value=0.14 Score=34.78 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=34.4
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++++..|-||++...+ +...||.= ..+..|+.+| ...||+|+.++.+.
T Consensus 3 e~~~~~C~IC~~~~~~----p~~l~CgH-----~fC~~Ci~~~-----------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC----PKLLPCLH-----TLCSGCLEAS-----------GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBC----CSCSTTSC-----CSBTTTCSSS-----------SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCC----eEEcCCCC-----cccHHHHccC-----------CCCCCcCCcEeecC
Confidence 4566789999876643 45677643 3678898661 57899999998654
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=85.70 E-value=0.077 Score=43.13 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+++-.|-||++.-. .+...|| . ...+..|+.+|++.+ ...||+|+.+..+
T Consensus 29 ~~~~~C~IC~~~~~----~pv~~~C--g---H~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLR----RPFQAQC--G---HRYCSFCLASILSSG-------PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCS----SEEECTT--S---CEEEHHHHHHHGGGS-------CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhc----CcEECCC--C---CccCHHHHHHHHhcC-------CCCCCCCCCcccc
Confidence 34578999987654 3455554 4 448999999999632 4689999998643
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=85.40 E-value=0.3 Score=39.86 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=37.6
Q ss_pred CCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++.-.|-||++.-. .+... .|. .....+|+.+|++.+. ..||+|+.++...
T Consensus 16 ~~~~~C~IC~~~~~----~pv~~--~Cg---H~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALR----EAVQT--PCG---HRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCS----SEEEC--TTS---CEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhc----CcEEC--CCC---CHHHHHHHHHHHHhCC-------CCCCCCccCcchh
Confidence 44568999987654 34554 454 5588999999998663 4999999998654
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=84.49 E-value=0.45 Score=36.35 Aligned_cols=50 Identities=12% Similarity=-0.059 Sum_probs=36.5
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++-.|-||++--. ++.+.||. | .-.-+.|+.+|+++ ...||+|+.++...
T Consensus 21 ~~~~CpI~~~~m~----dPV~~~cG--~--htf~r~cI~~~l~~--------~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMC----DPVVLPSS--R--VTVDRSTIARHLLS--------DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCS----SEEECTTT--C--CEEEHHHHHHHTTT--------SCBCTTTCSBCCTT
T ss_pred HhcCCcCcccccc----CCeECCCC--C--eEECHHHHHHHHHh--------CCCCCCCCCCCChh
Confidence 4568999976644 36777765 1 23668999999973 24899999998754
No 65
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=83.89 E-value=0.56 Score=35.93 Aligned_cols=49 Identities=8% Similarity=-0.160 Sum_probs=36.2
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++-.|-||++--. ++.+.||. .-.-+.|+.+|++. ...||+|+.++...
T Consensus 28 ~~~~CpI~~~~m~----dPV~~~cG-----htf~r~~I~~~l~~--------~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMT----DPVRLPSG-----TIMDRSIILRHLLN--------SPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCS----SEEEETTT-----EEEEHHHHHHHTTS--------CSBCSSSCCBCCTT
T ss_pred HhhCCcCccCccc----CCeECCCC-----CEEchHHHHHHHHc--------CCCCCCCCCCCChh
Confidence 3567888876643 47888863 33779999999972 36899999998753
No 66
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.22 E-value=0.55 Score=34.40 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=35.8
Q ss_pred ecCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
..++...|.||...++++ ++.++- |.+=.+++|+.|+.- ..-+.....|+.|..+
T Consensus 12 ~~~~~~~C~vC~~~~s~~-~~~ll~---CD~C~~~~H~~Cl~~------~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQN-SNVILF---CDMCNLAVHQECYGV------PYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCS-SSCEEE---CSSSCCEEEHHHHTC------SSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCCEEE---CCCCCCccccccCCC------CcCCCCCcCCccCcCc
Confidence 456678999998776443 234443 334447899999952 1123457899999654
No 67
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=81.52 E-value=0.69 Score=35.89 Aligned_cols=57 Identities=23% Similarity=0.467 Sum_probs=36.0
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHH--H------HHhccCCCCCCcccccCCccee
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRW--I------DEKQKGNAFTQVACPQCNTKYF 73 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rW--I------~esq~~n~~~~~~CeqCk~eY~ 73 (263)
+++.|-||-.-+.+ -..||+=- .+..|..||.+= + ....+.+...-..|+.|+.=..
T Consensus 14 ~D~~C~VC~~~t~~-----~l~pCRvC--~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~l 78 (89)
T 1wil_A 14 NDEMCDVCEVWTAE-----SLFPCRVC--TRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINL 78 (89)
T ss_dssp CSCCCTTTCCCCSS-----CCSSCSSS--SSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCS
T ss_pred CCcccCcccccccc-----ceeccccc--cccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhh
Confidence 46889998543332 37788633 288999999873 1 1111234566789999976443
No 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=79.98 E-value=1.2 Score=38.09 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++-.|-||++--. .|.+.||. .-.=+.|+.+|+.... . .||+|+.++...
T Consensus 105 ~~f~CPI~~elm~----DPV~~~~G-----htfer~~I~~~l~~~~------~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMR----EPCITPSG-----ITYDRKDIEEHLQRVG------H-FDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCS----SEEECTTS-----CEEEHHHHHHHHHHTC------S-BCTTTCCBCCGG
T ss_pred HhhcccCccccCC----CCeECCCC-----CEECHHHHHHHHHhCC------C-CCCCCcCCCChh
Confidence 3467889876644 37888863 2367899999998643 2 699999998754
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.96 E-value=0.84 Score=32.47 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=33.6
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
.+++..|.||++... +....||.=. .+-..|+.+ ...||+|+.++.-.
T Consensus 12 ~~~~~~C~IC~~~~~----~~v~~pCgH~----~~C~~C~~~------------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV----NWVLLPCRHT----CLCDGCVKY------------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCC----CCEETTTTBC----CSCTTHHHH------------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCC----CEEEECCCCh----hhhHHHHhc------------CCCCCCCCcchhce
Confidence 345789999998754 4677888532 134588862 36899999987643
No 70
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.70 E-value=1.8 Score=30.78 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=30.6
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~-VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
+..|.||++... ++...||. .. +...|+.+ ...||+|+.++.-
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCg-----H~~~C~~C~~~------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCG-----HLVTCKQCAEA------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSC-----CCCBCHHHHHH------------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEecCC-----CHHHHHHHhhC------------CCCCccCCceecC
Confidence 357999987754 35667873 33 57899842 3689999998764
No 71
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=70.75 E-value=0.7 Score=32.59 Aligned_cols=54 Identities=22% Similarity=0.557 Sum_probs=30.6
Q ss_pred eEeecCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCc
Q psy16185 4 LVIISSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 70 (263)
Q Consensus 4 ~~~~~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~ 70 (263)
+++..++...| ||...+. +.++. =|.|. ..|.|.+|+. +.+ .+..+..|+.|..
T Consensus 2 ~~~d~~e~~yC-~C~~~~~----g~mi~CD~~~C~--~~wfH~~Cvg--l~~----~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 2 VCRGSNEPTYC-LCHQVSY----GEMIGCDNPDCP--IEWFHFACVD--LTT----KPKGKWFCPRCVQ 57 (59)
T ss_dssp ------CCEET-TTTEECC----SEEEECSCTTCS--SCEEETGGGT--CSS----CCSSCCCCHHHHC
T ss_pred cccCCCCCcEE-ECCCCCC----CCeeEeeCCCCC--CCCEecccCC--ccc----CCCCCEECcCccC
Confidence 45666777888 8976542 34554 22243 1699999996 322 2335789999965
No 72
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.01 E-value=2 Score=32.48 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=35.5
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcce
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY 72 (263)
.+++..|.||...++++ .+.++. |.+-...+|+.|+.- ..-+.....|+.|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~-~~~ll~---CD~C~~~fH~~Cl~p------~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQN-SNVILF---CDMCNLAVHQECYGV------PYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCS-EEEEEE---CSSSCCCCCHHHHTC------SSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCC-CCCEEE---CCCCCchhhcccCCC------CccCCCceECccccCcc
Confidence 35678999998776433 234443 334447899999952 11244589999997653
No 73
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=69.14 E-value=1.1 Score=36.97 Aligned_cols=58 Identities=22% Similarity=0.645 Sum_probs=35.5
Q ss_pred eecCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcce
Q psy16185 6 IISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72 (263)
Q Consensus 6 ~~~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY 72 (263)
..+++...| +|....++ +..|+.=-.|. .|.|..|+.-=-.+. .......|+.|+..-
T Consensus 3 ~~~~~~~~C-~C~~~~~~--~~~mi~Cd~C~---~WfH~~Cv~~~~~~~---~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 3 LGSDTKLYC-ICKTPEDE--SKFYIGCDRCQ---NWYHGRCVGILQSEA---ELIDEYVCPQCQSTE 60 (174)
T ss_dssp ----CCEET-TTTEECCT--TSCEEECTTTC---CEEEHHHHTCCHHHH---TTCSSCCCHHHHHHH
T ss_pred CCCCCCcEe-eCCCCCCC--CCCEeECCCCC---chhChhhcCCchhhc---cCccCeecCCCcchh
Confidence 345677889 99776543 35677744554 999999994211111 123478999998754
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=68.83 E-value=0.66 Score=43.23 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=33.2
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
++..|.||++... ++...||.=. .....|+.+| ..||+|+.++.-.
T Consensus 294 ~~~~C~IC~~~~~----~~v~lpCgH~----~fC~~C~~~~------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV----SVVFIPCGHL----VVCQECAPSL------------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC----CEEEETTCCE----EECTTTGGGC------------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC----ceEEcCCCCh----hHhHHHHhcC------------CcCCCCCCCccCe
Confidence 4578999998764 4566677532 1577898776 4799999998643
No 75
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.14 E-value=3.1 Score=32.01 Aligned_cols=52 Identities=21% Similarity=0.597 Sum_probs=32.1
Q ss_pred ecCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
..++...| ||...+. ..++. =|.|. ..|.|..|+. |.+ .+..+..|+.|...
T Consensus 32 d~~e~~yC-iC~~~~~----g~MI~CD~~dC~--~~WfH~~CVg--l~~----~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY----GEMIGCDNPDCS--IEWFHFACVG--LTT----KPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC----SCCCCCSCSSCS--CCCCCSTTTT--CSS----CCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC----CCEeEecCCCCC--CCCEecccCC--cCc----CCCCCEECcCccCc
Confidence 34456777 8866542 23443 23354 2699999996 322 23457999999764
No 76
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=60.58 E-value=2.8 Score=38.17 Aligned_cols=50 Identities=14% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCeeeEecccCcCCCCCccee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccc--CCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ--CNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~-PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~Ceq--Ck~eY~i~ 75 (263)
+-.|-||++--.+ |..+ .|. .-.=+.|+.+|+.+.. ...||+ |+..+...
T Consensus 181 el~CPIcl~~f~D----PVts~~CG-----HsFcR~cI~~~~~~~~------~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEA----PLISRKCN-----HVFDRDGIQNYLQGYT------TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSS----EEEESSSC-----CEEEHHHHHHHSTTCS------CEECSGGGCSCEECGG
T ss_pred eeECcCccCcccC----CeeeCCCC-----CcccHHHHHHHHHhCC------CCCCCcccccCcCchh
Confidence 4678888766532 4443 443 3356799999997432 579999 99988765
No 77
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.14 E-value=4.9 Score=29.21 Aligned_cols=52 Identities=21% Similarity=0.597 Sum_probs=32.3
Q ss_pred ecCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
..++...| ||...+. +.++. =|.|. ..|.|..|+. |.+ .+..+..|+.|...
T Consensus 12 d~~~~~~C-~C~~~~~----g~MI~CD~~~C~--~~wfH~~Cvg--l~~----~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY----GEMIGCDNPDCS--IEWFHFACVG--LTT----KPRGKWFCPRCSQE 65 (71)
T ss_dssp CTTSCCCS-TTCCCSC----SSEECCSCSSCS--CCCEETTTTT--CSS----CCSSCCCCTTTSSC
T ss_pred CCCCCCEE-ECCCCCC----CCEeEeeCCCCC--CccEecccCC--cCc----CCCCCEECCCCCcc
Confidence 34556788 7866432 34553 22243 1699999996 322 23457999999764
No 78
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.66 E-value=7 Score=28.47 Aligned_cols=56 Identities=21% Similarity=0.580 Sum_probs=35.7
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcce
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY 72 (263)
+++...| ||....++ +..++.==.|. .|.|..|+.-=.... .......|+.|....
T Consensus 9 ~~~~~~C-~C~~~~d~--~~~MIqCd~C~---~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNV--NHFMIECGLCQ---DWFHGSCVGIEEENA---VDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCS--SSCEEEBTTTC---CEEEHHHHTCCHHHH---TTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCC--CCceEEcCCCC---CcEEeeecCcccccc---cCCCeEECCCccccc
Confidence 3456677 88665532 35788744565 999999995322211 123478999998764
No 79
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=53.40 E-value=3.3 Score=28.91 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=35.7
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
++++..|.+|...+.++ ++.++. |.+=.+..|+.|+.-=+.+.. ..+.....|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~-~~~ll~---Cd~C~~~~H~~C~~p~l~~~~-~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEA-PNEMVI---CDKCGQGYHQLCHTPHIDSSV-IDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBT-TBCEEE---CSSSCCEEETTTSSSCCCHHH-HHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCC-CCCEEE---CCCCChHHHhhhCCCcccccc-cCCCCCEECCCCcCc
Confidence 56789999998765443 234443 444457899999853221110 012347899999654
No 80
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.31 E-value=2.2 Score=29.94 Aligned_cols=52 Identities=21% Similarity=0.609 Sum_probs=30.3
Q ss_pred eecCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCc
Q psy16185 6 IISSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 70 (263)
Q Consensus 6 ~~~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~ 70 (263)
+..++...| ||...+. +.++. =|.|. ..|.|..|+. +.+ .+..+..|+.|..
T Consensus 5 ~d~~e~~~C-~C~~~~~----g~mi~CD~cdC~--~~wfH~~Cvg--l~~----~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVSY----GEMIGCDNPDCS--IEWFHFACVG--LTT----KPRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEECC----SEEEECSCTTCS--SCEEETGGGT--CSS----CCSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcCC----CCEEEeCCCCCC--CceEehhcCC--CCc----CCCCCEECcCccC
Confidence 445567778 8876532 34553 22243 2799999996 322 2345789999965
No 81
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=50.15 E-value=1.9 Score=31.44 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=31.2
Q ss_pred CCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 11 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 11 ~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+..|.||++... +....||.=. ..=.+|+.+| ..||+|+.++.-.
T Consensus 18 ~~~C~IC~~~~~----~~v~~pCgH~----~~C~~C~~~~------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI----NSTFCPCGHT----VCCESCAAQL------------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC----CEEEETTCBC----CBCHHHHTTC------------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC----cEEEECCCCH----HHHHHHHHhc------------CcCCCCCchhhCe
Confidence 478999987754 4677887532 1235787654 3899999988744
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=49.96 E-value=2.4 Score=30.54 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=32.3
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
....|.||...+ .++- |.+=.+..|..||.-.+.+. +.....|+.|+.+
T Consensus 11 ~~~~C~vC~~~~------~ll~---Cd~C~~~~H~~Cl~P~l~~~----P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGT------DVLR---CTHCAAAFHWRCHFPAGTSR----PGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCT------TCEE---CSSSCCEECHHHHCTTTCCC----CSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCC------eEEE---CCCCCCceecccCCCccCcC----CCCCEECccccCC
Confidence 346799996432 2442 44455889999996555332 3457899999875
No 83
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.89 E-value=3.6 Score=29.15 Aligned_cols=52 Identities=21% Similarity=0.566 Sum_probs=30.7
Q ss_pred eecCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCc
Q psy16185 6 IISSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 70 (263)
Q Consensus 6 ~~~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~ 70 (263)
+..++...| ||...+. +.++. =|.|. ..|.|-+|+. |. ..+..+..|+.|..
T Consensus 6 ~d~~e~~yC-~C~~~~~----g~MI~CD~c~C~--~~WfH~~Cvg--l~----~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 6 IDPNEPTYC-LCNQVSY----GEMIGCDNEQCP--IEWFHFSCVS--LT----YKPKGKWYCPKCRG 59 (62)
T ss_dssp ----CCEET-TTTEECC----SEEEECSCTTCS--SCEEETGGGT--CS----SCCSSCCCCHHHHT
T ss_pred cCCCCCcEE-ECCCCCC----CCeeeeeCCCCC--cccEecccCC--cC----cCCCCCEECcCccc
Confidence 455667788 8866532 34554 23344 3799999996 22 12345789999965
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=47.58 E-value=5.9 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.528 Sum_probs=33.4
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
++++..|.+|...+ .++. |.+-.++.|..||.-=+. ..+.....|+.|..+
T Consensus 8 ~~~~~~C~vC~~~g------~ll~---CD~C~~~fH~~Cl~p~l~----~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG------EIIL---CDTCPRAYHMVCLDPDME----KAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS------SEEE---CSSSSCEEEHHHHCTTCC----SCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC------cEEE---CCCCChhhhhhccCCCCC----CCCCCceECcccccc
Confidence 45678899997642 2332 445558899999954221 224467899999765
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.80 E-value=10 Score=25.07 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=29.4
Q ss_pred eeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCc
Q psy16185 13 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 70 (263)
Q Consensus 13 ~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~ 70 (263)
.|.||...+++ +.++. |.+-.++.|..||.-=+ ...+.....|+.|..
T Consensus 2 ~C~vC~~~~~~---~~ll~---Cd~C~~~~H~~Cl~p~l----~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED---DKLIL---CDECNKAFHLFCLRPAL----YEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC---SCCEE---CTTTCCEECHHHHCTTC----CSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC---CCEEE---CCCCChhhCcccCCCCc----CCCCCCcEECcCccc
Confidence 58888766532 23442 44555889999994211 112345789999975
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.79 E-value=9 Score=27.37 Aligned_cols=51 Identities=22% Similarity=0.487 Sum_probs=30.8
Q ss_pred CeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcce
Q psy16185 12 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72 (263)
Q Consensus 12 ~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY 72 (263)
..|.+|...+. +..|+. |.+=..|.|..|+.-= ..........|+.|..+.
T Consensus 19 ~~C~~C~~~~~---~~~mi~---CD~C~~wfH~~Cv~~~----~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 19 WICPGCNKPDD---GSPMIG---CDDCDDWYHWPCVGIM----AAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp ECBTTTTBCCS---SCCEEE---CSSSSSEEEHHHHTCS----SCCCSSSCCCCTTTHHHH
T ss_pred cCCCCCCCCCC---CCCEEE---cCCCCcccccccCCCC----ccCCCCCCEEChhccCch
Confidence 45777755542 234654 4455599999999421 111123578999997654
No 87
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=39.74 E-value=13 Score=25.83 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=29.7
Q ss_pred eeeEecccCcCCCCCccee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceee
Q psy16185 13 YCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 74 (263)
Q Consensus 13 ~CrIC~~~eeed~~~~~v~-PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i 74 (263)
.|-||++--+ ++.+. +| | .-.=..|+.+|+++.. .||+++.+...
T Consensus 5 ~CpIs~~~m~----dPV~~~~s---G--~~yer~~I~~~l~~~~--------~cP~t~~~L~~ 50 (61)
T 2bay_A 5 LCAISGKVPR----RPVLSPKS---R--TIFEKSLLEQYVKDTG--------NDPITNEPLSI 50 (61)
T ss_dssp CCTTTCSCCS----SEEEETTT---T--EEEEHHHHHHHHHHHS--------BCTTTCCBCCG
T ss_pred EecCCCCCCC----CCEEeCCC---C--cEEcHHHHHHHHHhCC--------CCcCCcCCCCh
Confidence 4666655443 35565 33 2 2366899999998643 49999988754
No 88
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.44 E-value=9.1 Score=29.26 Aligned_cols=50 Identities=20% Similarity=0.566 Sum_probs=30.7
Q ss_pred cCCCCeeeEecccCcCCCCCcce--eccCCCCCCccccHHHHHHHHHHhccCCCCCCccccc-CCc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWV--QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ-CNT 70 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v--~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~Ceq-Ck~ 70 (263)
+++...| ||...+. +.++ .=|.|. ..|.|..|+- |.+ .+..+..|+. |..
T Consensus 23 ~~~~~yC-iC~~~~~----g~MI~CD~c~C~--~eWfH~~CVg--l~~----~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY----GPMVACDNPACP--FEWFHYGCVG--LKQ----APKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS----SSEECCCSSSCS--CSCEETTTSS--CSS----CTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC----CCEEEecCCCCc--cccCcCccCC--CCc----CCCCCccCChhhcc
Confidence 4456788 8875432 2354 334454 3799999995 221 2345789999 973
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.99 E-value=15 Score=30.34 Aligned_cols=53 Identities=19% Similarity=0.406 Sum_probs=33.0
Q ss_pred cCCCCeeeEecccCcCCCCCcceecc-CCCCCCccccHHHHHHHHHHhc--c-CCCCCCcccccCCc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPC-LCRGTSKWVHQACLNRWIDEKQ--K-GNAFTQVACPQCNT 70 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC-~C~GS~k~VHq~CL~rWI~esq--~-~n~~~~~~CeqCk~ 70 (263)
+..+..|++|-+.++ ++ -| .|. +-.|..||..=+.... + ..+.....|+.|..
T Consensus 60 Dg~~d~C~vC~~GG~------Ll-cCD~Cp---r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN------LI-CCDFCH---NAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS------EE-ECSSSC---CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCc------EE-eCCCCC---CeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345789999976542 33 12 344 6789999986553211 0 02345899999974
No 90
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.85 E-value=1.1 Score=33.81 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=37.8
Q ss_pred CCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeec
Q psy16185 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 75 (263)
Q Consensus 10 e~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~ 75 (263)
+...|.+|...+.++ .+.++- |.+=.+..|+.||.==+.......+.....|+.|.......
T Consensus 15 ~~~~C~vC~~~~~~~-~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVAS-GNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCT-TCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCC-CCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 457899998775532 244554 34444779999995433221101234578999998776543
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.59 E-value=29 Score=26.70 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=25.8
Q ss_pred CCCCeeeEecccCcCC---CCCcceeccCCCCCCccccHHHHHH
Q psy16185 9 SDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNR 49 (263)
Q Consensus 9 ee~~~CrIC~~~eeed---~~~~~v~PC~C~GS~k~VHq~CL~r 49 (263)
+....|.+|..+++.+ ..++++. |.+--+..|.+||.-
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLKF 43 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHTC
T ss_pred ccCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhcC
Confidence 4568899998876432 1346775 444457899999953
No 92
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=33.23 E-value=13 Score=29.16 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=21.9
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHH
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLN 48 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~ 48 (263)
.++++.|.+|... ++ .--|..++--++.|..||.
T Consensus 12 ~~~~~~C~~C~~~------G~-ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 12 QMHEDYCFQCGDG------GE-LVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCSSCTTTCCC------SE-EEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCCcCCCC------Cc-EeEECCCCCCcccccccCc
Confidence 3467889999733 23 3346522333899999996
No 93
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=32.93 E-value=15 Score=31.57 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=29.0
Q ss_pred EecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhcc-CCCCCCcccccCCc
Q psy16185 16 VCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQK-GNAFTQVACPQCNT 70 (263)
Q Consensus 16 IC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~-~n~~~~~~CeqCk~ 70 (263)
.|+.+.+-+-+...+.=+.|+ +|+|++|++.=. .+-. ....-.-.|.+|..
T Consensus 7 yCYCG~~~~~~~~mLqC~~C~---qWFH~~Cl~~~~-~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 7 SVDEENGRQLGEVELQCGICT---KWFTADTFGIDT-SSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ----CTTCCTTSCEEECTTTC---CEEEGGGGTCCC-TTCCTTCCSEEEECTTTST
T ss_pred EEEcCCCCCCCceeEeecccc---ceecHHHhcccc-cCccccceeEEEEccccCC
Confidence 677777555556677778888 999999996100 0000 01123347999986
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.15 E-value=3.1 Score=34.63 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=32.7
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
+++++.|.+|..++ .++- |.+--+..|..||.--+. ..+.....|+.|+..
T Consensus 1 ~~~~~~C~~C~~~g------~ll~---Cd~C~~~~H~~C~~p~l~----~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 1 SPNEDWCAVCQNGG------ELLC---CEKCPKVFHLSCHVPTLT----NFPSGEWICTFCRDL 51 (184)
T ss_dssp CCSCSSCTTTCCCS------SCEE---CSSSSCEECTTTSSSCCS----SCCSSCCCCTTTSCS
T ss_pred CCCCCccccCCCCC------eeee---cCCCCcccCccccCCCCC----CCCCCCEECccccCc
Confidence 35678899997442 2332 444558899999843322 123456899999865
No 95
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=30.44 E-value=1.9 Score=30.80 Aligned_cols=54 Identities=22% Similarity=0.467 Sum_probs=29.5
Q ss_pred CCCCeeeEecccCcCCCCCcceecc---CCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCc
Q psy16185 9 SDLKYCWVCFATHEDDRNALWVQPC---LCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 70 (263)
Q Consensus 9 ee~~~CrIC~~~eeed~~~~~v~PC---~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~ 70 (263)
++...| ||...++ ++.++. | .|. .|.|-.|+--=-......+...+..|+.|+.
T Consensus 8 e~~v~C-~C~~~~~---~g~mI~-CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMV---NDSMIQ-CEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSC---CSCEEE-CSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcC---CCCEEE-ECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344567 7855433 245665 6 476 7999999831000001111224688999974
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=29.04 E-value=15 Score=25.28 Aligned_cols=56 Identities=23% Similarity=0.580 Sum_probs=35.7
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
++++..|-+|.....+ +..|+. |..=..|.|..|+.-=.... .......|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~~~--~~~mI~---Cd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAA--DEFWIC---CDLCEMWFHGKCVKITPARA---EHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCS--SSCEEE---CSSSCCEEETTTTTCCTTGG---GGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCC--CCCEEE---ccCCCCCCCccccCcChhHh---cCCCcEECCCCcCc
Confidence 5677889999776543 356776 33334999999984311111 11247899999764
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.80 E-value=28 Score=26.38 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=29.7
Q ss_pred CeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 12 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 12 ~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
..| ||...+++ +.++. |.+-..|.|..|+.- . ..+......|+.|+.+
T Consensus 29 vrC-iC~~~~~~---~~mi~---Cd~C~~w~H~~C~~~--~---~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDD---GYMIC---CDKCSVWQHIDCMGI--D---RQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCS---SCEEE---BTTTCBEEETTTTTC--C---TTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCC---CcEEE---cCCCCCcCcCcCCCC--C---ccCCCCCEECCCCcCC
Confidence 457 78655432 45775 344449999999842 1 1122346899999754
No 98
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=24.16 E-value=29 Score=24.60 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=30.6
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCC-CCCccccHHHHHHHHHHhc--cCCCCCCcccccCC
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCR-GTSKWVHQACLNRWIDEKQ--KGNAFTQVACPQCN 69 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~-GS~k~VHq~CL~rWI~esq--~~n~~~~~~CeqCk 69 (263)
+++...|-+|.....++ ..|+. | . +=.+|.|..|.--=..+.+ ..++.....|+.|.
T Consensus 5 ~~~~~~C~~C~~p~~~~--~~mI~-C--D~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDD--QDAIL-C--EASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTT--SCEEE-B--TTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCC--CCeEe-c--ccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 45567899998775443 45654 4 2 3339999999832111110 01233467888875
No 99
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.36 E-value=42 Score=24.07 Aligned_cols=52 Identities=25% Similarity=0.579 Sum_probs=31.4
Q ss_pred cCCCCeeeEecccCcCCCCCccee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcce
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~--PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY 72 (263)
+++...| ||...+. +.++. =|.|. ..|.|.+|+. |. ..+..+..|+.|....
T Consensus 3 ~~~~~yC-~C~~~~~----g~MI~CD~cdC~--~~WfH~~Cvg--l~----~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY----GEMVGCDNQDCP--IEWFHYGCVG--LT----EAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC----SSEECCSCTTCS--CCCEEHHHHT--CS----SCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCC----CCEeEeCCCCCC--ccCCcccccc--cC----cCCCCCEECCCCCccc
Confidence 4556677 4765432 24553 33343 3799999996 22 1235578999997653
No 100
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.81 E-value=19 Score=27.74 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=36.6
Q ss_pred CeeeEecccCcCCCCCcceecc-CCCCCCccccHHHHHHHHHHhcc--CCCCCCcccccCCccee
Q psy16185 12 KYCWVCFATHEDDRNALWVQPC-LCRGTSKWVHQACLNRWIDEKQK--GNAFTQVACPQCNTKYF 73 (263)
Q Consensus 12 ~~CrIC~~~eeed~~~~~v~PC-~C~GS~k~VHq~CL~rWI~esq~--~n~~~~~~CeqCk~eY~ 73 (263)
..|-||.....++ ..++.=| .|. .|.|-+|+.-=-...+. .++..+..|+.|...-.
T Consensus 4 ~~C~iC~~p~~~~--~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDD--QDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTT--SCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCC--CCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 5688998775443 5688766 787 99999998411100000 12335789999987654
No 101
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.31 E-value=4.7 Score=34.30 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=33.6
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcce
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY 72 (263)
++++..|.+|...+ .++- |.+--+..|..||.--+.+ .+.....|+.|...-
T Consensus 4 d~~~~~C~~C~~~g------~ll~---Cd~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGG------DLLC---CEKCPKVFHLTCHVPTLLS----FPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCE------EEEE---CSSSSCEECTTTSSSCCSS----CCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC------ceEE---cCCCCCccCCccCCCCCCC----CCCCCEEeCceeCcc
Confidence 45568899996543 2332 5555588999998543321 234568999998754
No 102
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.28 E-value=38 Score=19.01 Aligned_cols=14 Identities=21% Similarity=0.873 Sum_probs=11.4
Q ss_pred CCCcccccCCccee
Q psy16185 60 FTQVACPQCNTKYF 73 (263)
Q Consensus 60 ~~~~~CeqCk~eY~ 73 (263)
.....|+.|+..|.
T Consensus 9 ~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS 22 (37)
T ss_dssp SSSBCCTTTCCCBS
T ss_pred CCCccCCCCCcccC
Confidence 45689999999875
No 103
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.27 E-value=30 Score=17.98 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=10.0
Q ss_pred CcccccCCccee
Q psy16185 62 QVACPQCNTKYF 73 (263)
Q Consensus 62 ~~~CeqCk~eY~ 73 (263)
...|++|+..|.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 568999999875
No 104
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=21.17 E-value=89 Score=23.49 Aligned_cols=42 Identities=24% Similarity=0.589 Sum_probs=29.1
Q ss_pred CCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcceeeccC
Q psy16185 26 NALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYP 77 (263)
Q Consensus 26 ~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~eY~i~~P 77 (263)
...|..||+| |..-.+.++=|. +...-..|+-|.=-.++.+.
T Consensus 26 ~~~y~y~CrC-Gd~F~it~edL~---------~ge~iv~C~sCSL~I~V~~~ 67 (83)
T 1wge_A 26 SETYFYPCPC-GDNFAITKEDLE---------NGEDVATCPSCSLIIKVIYD 67 (83)
T ss_dssp TTEEEECCSS-SSCEEEEHHHHH---------TTCCEEECTTTCCEEEEECC
T ss_pred CCEEEEeCCC-CCEEEECHHHHh---------CCCEEEECCCCceEEEEEec
Confidence 4579999999 554566655442 22346899999988877654
No 105
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=21.07 E-value=93 Score=27.53 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=34.5
Q ss_pred hhhhhhhhhhhhhhHhhhhhceeccchhh------hhhhhhhhhHHHHhcCChhhHHHHHhhhhhhc-c-cCCCCCchhh
Q psy16185 153 FQLDNILRICDKGLLRRLRARQVIGRENG------LQVMREVDAIVLLLGLPAIPVVLILGWCHIHR-H-QGHPQDLPQA 224 (263)
Q Consensus 153 ~~~~ni~~d~~~g~~~~~~~~~v~g~~~~------~~~m~~~~~~~~~~glp~ip~~lil~r~~~~~-~-~~~~~~~~~~ 224 (263)
+.+--++.-.++++-=-|++=|-.|-.++ .+.++....+... .+=.+|+..+++...+.| + ++.|..--+.
T Consensus 171 ~Yiv~lval~~Hl~hGl~s~~qt~G~~~~~~~~~~~~~~~~i~~~l~~-~~i~lG~~al~~f~~~g~~~~~~~~~~~~~~ 249 (256)
T 2bs2_C 171 LYLVLLFAVELHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSA-FLIVLGLLTFGAYVKKGLEQTDPNIDYKYFD 249 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCCTTCCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhccCcCCchhH
Confidence 33444445555655555666677775444 4455544332221 111233333444444444 2 3444332244
Q ss_pred Hhhhh
Q psy16185 225 AEVRH 229 (263)
Q Consensus 225 ~~~~~ 229 (263)
.+++|
T Consensus 250 ~~~~~ 254 (256)
T 2bs2_C 250 YKRTH 254 (256)
T ss_dssp TTTCC
T ss_pred hHhhc
Confidence 55444
No 106
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.60 E-value=43 Score=18.52 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=11.3
Q ss_pred CCCcccccCCccee
Q psy16185 60 FTQVACPQCNTKYF 73 (263)
Q Consensus 60 ~~~~~CeqCk~eY~ 73 (263)
.....|++|+..|.
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 44679999999875
No 107
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.52 E-value=5.9 Score=27.67 Aligned_cols=51 Identities=22% Similarity=0.470 Sum_probs=31.5
Q ss_pred cCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHHHHhccCCCCCCcccccCCcc
Q psy16185 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71 (263)
Q Consensus 8 ~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI~esq~~n~~~~~~CeqCk~e 71 (263)
++++..|.+|...+ .++ .|.+-.+..|..||.-=+. ..+.....|+.|..+
T Consensus 6 d~~~~~C~vC~~~g------~ll---~Cd~C~~~fH~~Cl~ppl~----~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG------ELL---CCDTCPSSYHIHCLNPPLP----EIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS------SCB---CCSSSCCCBCSSSSSSCCS----SCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC------CEE---EcCCCCHHHcccccCCCcC----cCCCCccCChhhcCc
Confidence 44578899996532 222 2344447799999953221 123457899999764
No 108
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.08 E-value=12 Score=28.63 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=26.0
Q ss_pred ecCCCCeeeEecccCcCCCCCcceeccCCCCCCccccHHHHHHHH
Q psy16185 7 ISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWI 51 (263)
Q Consensus 7 ~~ee~~~CrIC~~~eeed~~~~~v~PC~C~GS~k~VHq~CL~rWI 51 (263)
+.++++.|.||...++. ++++. |.+=-+..|..||.-.+
T Consensus 3 ~~~~~~~C~~C~~~g~~---~~ll~---C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDL---LDQFF---CTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCCSCBTTTCCCCCT---TTSEE---CSSSCCEECTTTTTCCC
T ss_pred CCCCCCCCcCCCCCCCC---cCCeE---CCCCCCCcChHHhCCcc
Confidence 45688999999776542 23442 33334779999997554
Done!