RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16185
(263 letters)
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 39.1 bits (90), Expect = 2e-05
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 10 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCN 69
D+ CW+C ++ + C C G + VH++CL+ W+ AC C
Sbjct: 5 DVPVCWICN----EELGNERFRACGCTGELENVHRSCLSTWLTI------SRNTACQICG 54
Query: 70 TKYFI 74
Y
Sbjct: 55 VVYNT 59
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 34.8 bits (79), Expect = 0.001
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 13 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71
C VC N L C+ HQ C + +K+ + C +C +
Sbjct: 18 ACVVCRQMTVASGNQL----VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 33.9 bits (77), Expect = 0.003
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ 67
SS C +C + + + C C CL ++++ K T ++CP
Sbjct: 2 SSGSSGCKLCLGEYPVE-QMTTIAQCQCI-----FCTLCLKQYVELLIKEGLETAISCPD 55
Query: 68 CNTKYFIVYPYRGL 81
+
Sbjct: 56 AACPKQGHLQENEI 69
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 33.1 bits (74), Expect = 0.011
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 1 MLCLVIISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAF 60
++C+ ++ Y + + + C S H CL K +
Sbjct: 29 IICMEKLAVASGYSDMTDSKALGPMVVGRLTKC-----SHAFHLLCLLAMYCNGNKDGSL 83
Query: 61 TQVACPQCNTKY 72
CP C T Y
Sbjct: 84 Q---CPSCKTIY 92
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 30.8 bits (69), Expect = 0.021
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ 67
S C C ++ D W+ C W H C+ + + CP
Sbjct: 3 SGSSGQCGACGESYAADEF--WIC---CDLCEMWFHGKCVKITPARAEHIKQYK---CPS 54
Query: 68 CNTK 71
C+ K
Sbjct: 55 CSNK 58
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 30.7 bits (69), Expect = 0.026
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 13 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71
+C VC +D L C H CLN + E G CP+C
Sbjct: 11 FCRVC----KDGGELL-----CCDTCPSSYHIHCLNPPLPEIPNGEWL----CPRCTCP 56
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 29.9 bits (67), Expect = 0.029
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 14 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 68
C VC EDD+ LC +K H CL + E G CP C
Sbjct: 3 CKVCRKKGEDDK------LILCDECNKAFHLFCLRPALYEVPDGEWQ----CPAC 47
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 30.4 bits (68), Expect = 0.033
Identities = 6/58 (10%), Positives = 12/58 (20%), Gaps = 10/58 (17%)
Query: 14 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71
+C + +C H C + + C C+
Sbjct: 7 ATICRVCQKPGD------LVMCNQCEFCFHLDCHLPALQDVPGEEWS----CSLCHVL 54
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 29.2 bits (65), Expect = 0.084
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 17 CFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 71
C +DD + C G W H C+ + C +C
Sbjct: 19 CKCGTKDDDGERMLA---CDGCGVWHHTRCIGINNADALPSKFL----CFRCIEL 66
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 28.2 bits (62), Expect = 0.31
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 3 CLVIISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQ 62
C I C A+ + + C + H C++RW+ +Q
Sbjct: 27 CRNHIMDLCIECQANQASATSEECTVAWGVC-----NHAFHFHCISRWLKTRQV------ 75
Query: 63 VACPQCNTKY 72
CP N ++
Sbjct: 76 --CPLDNREW 83
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 27.7 bits (61), Expect = 0.36
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 13 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 72
YC +C + + ++ LC+ W H +C+ + + + CP C +
Sbjct: 14 YC-LCRQPYNVNH--FMIECGLCQ---DWFHGSCVGIEEENAVDIDIYH---CPDCEAVF 64
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 25.4 bits (55), Expect = 2.7
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 6 IISSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQV-A 64
+ + YC +C + N + C +W H C+ + +
Sbjct: 11 VYDPNALYC-IC---RQPHNNRFMIC---CDRCEEWFHGDCVGISEARGRLLERNGEDYI 63
Query: 65 CPQC 68
CP C
Sbjct: 64 CPNC 67
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.1 bits (54), Expect = 2.8
Identities = 11/62 (17%), Positives = 13/62 (20%), Gaps = 6/62 (9%)
Query: 8 SSDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLN-RWIDEKQKGNAFTQVACP 66
C VC + E D C W H C+ C
Sbjct: 13 PEIKVRC-VCGNSLETDSMIQ----CEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67
Query: 67 QC 68
C
Sbjct: 68 IC 69
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 38
Score = 23.6 bits (51), Expect = 4.2
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 64 ACPQCNTKYFIVYPYRGLLV 83
CPQCN++Y Y LLV
Sbjct: 5 PCPQCNSEY--TYEDGALLV 22
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 23.7 bits (51), Expect = 7.1
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 14 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 68
C VC A ED A ++ C H C++ W+ CP C
Sbjct: 8 CAVCLAELEDGEEARFLPRC-----GHGFHAECVDMWLGSHST--------CPLC 49
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 25.5 bits (56), Expect = 7.9
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 126 PLHTYLGALSLRFC---LV---HPLVN-INRQYRFQLDNILRIC 162
+ L LS + L VN +N+Q R L+N LR+
Sbjct: 353 NFYPVLTFLSY-WLKAPLTRPGFHPVNGLNKQ-RTALENFLRLL 394
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.141 0.464
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,467
Number of extensions: 44590
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 20
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.3 bits)