BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16186
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UOR|A Chain A, The Structure Of The Sugar-Binding Protein Male From The
Phytopathogen Xanthomonas Citri
pdb|3UOR|B Chain B, The Structure Of The Sugar-Binding Protein Male From The
Phytopathogen Xanthomonas Citri
Length = 458
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 22/65 (33%)
Query: 1 MSGPWDELESKLKKP----------------------CPTKSMLEFENTTHISSEWEMVL 38
+SGPW+ E KL++P S++ F+++ H + W+++
Sbjct: 263 LSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDASWKLIE 322
Query: 39 QSSQP 43
SQP
Sbjct: 323 YLSQP 327
>pdb|2FL8|A Chain A, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|B Chain B, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|C Chain C, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|D Chain D, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|E Chain E, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|F Chain F, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|G Chain G, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|H Chain H, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|I Chain I, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|J Chain J, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|K Chain K, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|L Chain L, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|M Chain M, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|N Chain N, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|O Chain O, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|P Chain P, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|Q Chain Q, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|R Chain R, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL9|A Chain A, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|B Chain B, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|C Chain C, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|D Chain D, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|E Chain E, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|F Chain F, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|G Chain G, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|H Chain H, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|I Chain I, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|J Chain J, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|K Chain K, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|L Chain L, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|M Chain M, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|N Chain N, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|O Chain O, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|P Chain P, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|Q Chain Q, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|R Chain R, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
Length = 602
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 4 PWDELESKLKKPCPTKSMLEFENTTHISSEWEMVLQSSQPLWLGLRCLSSMIHLDLAVEH 63
P D +L++PC ++ E S+W Q +R L S + ++E
Sbjct: 224 PLDGFNIRLRQPCNIGDTVQIETFMDGVSQWRSSYTRRQ-----IRLLDSKLTSKTSLEG 278
Query: 64 AMYVYD 69
++YV D
Sbjct: 279 SIYVTD 284
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 49 RCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSL 108
RCL ++H+DL + YV +T + + M D ALD+ M+ Q+ + +++
Sbjct: 71 RCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINF 130
>pdb|2BW3|A Chain A, Three-Dimensional Structure Of The Hermes Dna Transposase
Length = 534
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 8 LESKLKKPCPTKSMLEFENTTHISSEWEMVLQ 39
L S LK CPT+ + I WE V+Q
Sbjct: 232 LRSSLKSECPTRWNSTYTXLRSILDNWESVIQ 263
>pdb|3NOK|A Chain A, Crystal Structure Of Myxococcus Xanthus Glutaminyl
Cyclase
pdb|3NOK|B Chain B, Crystal Structure Of Myxococcus Xanthus Glutaminyl
Cyclase
Length = 268
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 FENTTHISSEWEMVLQSSQPLWL 46
FE+T H + ++ L+S+QP+W+
Sbjct: 68 FESTGHQGTLRQLSLESAQPVWM 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,129,023
Number of Sequences: 62578
Number of extensions: 99894
Number of successful extensions: 210
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 6
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)