BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16186
         (111 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1
          Length = 684

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 61  VEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYF 105
           ++HA+YVYD  HVIIDN+QFM+G    + DR   QD II V   F
Sbjct: 501 MQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKF 545


>sp|Q8CIW5|PEO1_MOUSE Twinkle protein, mitochondrial OS=Mus musculus GN=Peo1 PE=2 SV=1
          Length = 685

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 61  VEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYF 105
           ++HA+YVYD  HV+IDN+QFM+G    + DR   QD I+     F
Sbjct: 502 MQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKF 546


>sp|Q5ZIW1|PEO1_CHICK Twinkle protein, mitochondrial OS=Gallus gallus GN=PEO1 PE=2 SV=1
          Length = 669

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 61  VEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYF 105
           ++HA+Y+YD  HV++DN+QFM+G    + DR   QD I+     F
Sbjct: 507 MQHAVYMYDITHVVVDNLQFMMGHEQLSADRLAAQDFIVGAFRKF 551


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,443,485
Number of Sequences: 539616
Number of extensions: 1285324
Number of successful extensions: 2495
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2492
Number of HSP's gapped (non-prelim): 3
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)