Query psy16186
Match_columns 111
No_of_seqs 75 out of 77
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 22:57:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q57_A DNA primase/helicase; d 98.4 3.1E-07 1.1E-11 75.0 5.5 107 2-110 273-394 (503)
2 4a1f_A DNAB helicase, replicat 98.2 3.9E-07 1.3E-11 73.5 1.8 106 3-110 77-196 (338)
3 3bh0_A DNAB-like replicative h 98.0 5.9E-06 2E-10 64.2 5.4 105 3-110 99-221 (315)
4 2q6t_A DNAB replication FORK h 97.9 2E-05 7E-10 63.7 6.6 107 3-110 232-353 (444)
5 3bgw_A DNAB-like replicative h 97.9 1.9E-05 6.6E-10 64.9 6.0 105 3-110 228-350 (444)
6 2r6a_A DNAB helicase, replicat 97.8 4.1E-05 1.4E-09 62.1 6.4 108 2-110 234-354 (454)
7 1cr0_A DNA primase/helicase; R 96.9 0.002 6.8E-08 48.3 5.9 106 3-110 67-187 (296)
8 2zts_A Putative uncharacterize 96.2 0.0027 9.2E-08 45.0 2.7 101 3-110 62-172 (251)
9 2dr3_A UPF0273 protein PH0284; 93.4 0.18 6.2E-06 35.5 5.8 54 51-110 110-163 (247)
10 2i1q_A DNA repair and recombin 89.1 0.29 1E-05 37.1 3.3 56 55-110 189-249 (322)
11 2w0m_A SSO2452; RECA, SSPF, un 88.5 1.1 3.7E-05 30.9 5.7 51 53-109 105-157 (235)
12 2z43_A DNA repair and recombin 86.2 0.71 2.4E-05 35.4 4.0 56 55-110 188-248 (324)
13 1n0w_A DNA repair protein RAD5 83.3 1.8 6.2E-05 30.2 4.7 53 57-109 107-163 (243)
14 1v5w_A DMC1, meiotic recombina 81.8 1.7 5.8E-05 33.8 4.5 57 54-110 202-264 (343)
15 2cvh_A DNA repair and recombin 79.0 1.4 4.7E-05 30.4 2.8 59 50-109 87-145 (220)
16 1g5c_A Beta-carbonic anhydrase 78.8 1.5 5.1E-05 31.7 3.0 37 44-86 52-89 (170)
17 1xp8_A RECA protein, recombina 72.5 8.7 0.0003 30.7 6.3 34 50-83 133-166 (366)
18 3lda_A DNA repair protein RAD5 71.0 5.9 0.0002 32.1 5.0 55 56-110 260-318 (400)
19 1ekj_A Beta-carbonic anhydrase 70.9 2.8 9.6E-05 31.5 2.9 20 56-75 90-109 (221)
20 1ym3_A Carbonic anhydrase (car 67.6 3.2 0.00011 31.1 2.6 26 55-86 89-114 (215)
21 1ylk_A Hypothetical protein RV 67.3 4.3 0.00015 29.6 3.2 38 44-87 62-100 (172)
22 2b8t_A Thymidine kinase; deoxy 67.2 3.8 0.00013 30.7 2.9 29 53-81 73-101 (223)
23 2w3q_A Carbonic anhydrase 2; l 65.4 4.1 0.00014 31.3 2.8 25 56-86 106-130 (243)
24 3hr8_A Protein RECA; alpha and 63.7 18 0.00062 28.9 6.4 63 48-110 118-188 (356)
25 3qy1_A Carbonic anhydrase; str 61.6 5.3 0.00018 30.4 2.8 25 56-86 79-103 (223)
26 2i5g_A Amidohydrolase; NYSGXRC 57.5 8.6 0.00029 30.5 3.5 26 50-75 221-246 (325)
27 3b40_A PVDM, probable dipeptid 55.5 9.3 0.00032 31.6 3.5 26 50-75 331-356 (417)
28 3las_A Putative carbonic anhyd 52.1 10 0.00034 27.7 2.8 52 46-104 59-110 (166)
29 3eyx_A Carbonic anhydrase; ros 51.6 9.9 0.00034 28.9 2.8 20 56-75 85-104 (216)
30 4a74_A DNA repair and recombin 51.4 14 0.00047 25.3 3.3 52 58-109 109-169 (231)
31 3id7_A Dipeptidase; streptomyc 50.9 12 0.00042 30.8 3.5 26 50-75 292-317 (400)
32 3ucj_A Carbonic anhydrase; alp 50.9 10 0.00036 29.0 2.9 25 56-86 81-105 (227)
33 1u94_A RECA protein, recombina 50.4 12 0.00042 29.6 3.3 34 50-83 122-155 (356)
34 2rag_A Dipeptidase; aminohydro 49.1 14 0.00047 30.6 3.5 25 51-75 333-357 (417)
35 3cmw_A Protein RECA, recombina 48.5 23 0.0008 34.4 5.4 37 47-83 788-824 (1706)
36 1ddz_A Carbonic anhydrase; alp 47.8 11 0.00039 31.8 2.9 20 56-75 362-381 (496)
37 3e3i_A Carbonic anhydrase 2, b 47.5 13 0.00043 28.7 2.9 25 56-86 76-100 (229)
38 1itu_A Renal dipeptidase; glyc 46.9 16 0.00054 29.8 3.5 26 50-75 260-285 (369)
39 1ddz_A Carbonic anhydrase; alp 42.5 15 0.0005 31.1 2.7 25 56-86 108-132 (496)
40 3neh_A Renal dipeptidase famil 40.0 22 0.00074 28.4 3.3 26 50-75 235-260 (318)
41 2ehv_A Hypothetical protein PH 39.4 83 0.0028 21.6 5.9 34 51-84 117-150 (251)
42 3e2i_A Thymidine kinase; Zn-bi 39.2 11 0.00038 28.8 1.4 26 68-106 100-125 (219)
43 4f92_B U5 small nuclear ribonu 38.8 80 0.0027 30.4 7.3 70 32-107 990-1078(1724)
44 2orw_A Thymidine kinase; TMTK, 38.0 11 0.00038 26.6 1.1 13 69-81 76-88 (184)
45 2j9r_A Thymidine kinase; TK1, 38.0 12 0.00041 28.3 1.4 12 69-80 101-112 (214)
46 3ly0_A Dipeptidase AC. metallo 37.7 24 0.00081 28.8 3.2 25 51-75 279-303 (364)
47 1w4r_A Thymidine kinase; type 36.0 13 0.00045 27.7 1.3 14 68-81 90-103 (195)
48 1xx6_A Thymidine kinase; NESG, 35.0 15 0.0005 26.6 1.4 12 69-80 81-92 (191)
49 1nlf_A Regulatory protein REPA 34.9 37 0.0013 24.8 3.6 40 66-108 130-169 (279)
50 2orv_A Thymidine kinase; TP4A 33.9 15 0.00053 28.3 1.4 15 68-82 89-103 (234)
51 3teo_A Carbon disulfide hydrol 32.5 37 0.0013 25.6 3.3 35 46-86 56-90 (204)
52 2jw5_A DNA polymerase lambda; 32.2 16 0.00055 24.3 1.2 10 68-77 49-58 (106)
53 3dgv_A TAFI, carboxypeptidase 31.8 36 0.0012 27.6 3.4 51 59-109 56-118 (401)
54 3b6e_A Interferon-induced heli 29.1 68 0.0023 21.4 4.0 19 66-84 159-177 (216)
55 3cmu_A Protein RECA, recombina 27.0 1.2E+02 0.0041 30.2 6.5 36 48-83 440-475 (2050)
56 4eq6_B Platinum sensitivity pr 26.9 49 0.0017 26.4 3.2 36 70-105 144-184 (256)
57 3zxn_A RSBS, anti-sigma-factor 26.9 40 0.0014 22.4 2.4 26 51-76 24-49 (123)
58 2zr9_A Protein RECA, recombina 26.5 52 0.0018 25.7 3.3 35 49-83 119-153 (349)
59 1pzn_A RAD51, DNA repair and r 26.5 74 0.0025 24.6 4.2 57 54-110 211-276 (349)
60 1vec_A ATP-dependent RNA helic 25.8 35 0.0012 23.0 2.0 19 67-85 144-162 (206)
61 2pl3_A Probable ATP-dependent 25.4 35 0.0012 23.8 2.0 30 56-85 156-187 (236)
62 3cmw_A Protein RECA, recombina 23.0 1.1E+02 0.0039 29.8 5.4 36 48-83 440-475 (1706)
63 1vjq_A Designed protein; struc 22.5 50 0.0017 20.1 2.1 23 60-82 52-75 (79)
64 3dkp_A Probable ATP-dependent 22.5 32 0.0011 24.1 1.3 33 53-85 156-191 (245)
65 3cmu_A Protein RECA, recombina 22.1 1.5E+02 0.0053 29.5 6.2 61 50-110 791-859 (2050)
66 3llm_A ATP-dependent RNA helic 22.0 46 0.0016 23.5 2.1 25 53-79 162-186 (235)
67 2qip_A Protein of unknown func 21.9 68 0.0023 22.1 2.9 24 49-75 91-114 (165)
68 1rbl_M Ribulose 1,5 bisphospha 21.4 90 0.0031 21.5 3.4 33 46-78 59-94 (109)
69 3zxw_B Ribulose bisphosphate c 21.3 95 0.0032 21.8 3.5 33 46-78 58-93 (118)
70 1svd_M Ribulose bisphosphate c 21.0 1E+02 0.0035 21.3 3.6 33 46-78 61-96 (110)
71 2gxq_A Heat resistant RNA depe 20.5 53 0.0018 22.0 2.0 19 67-85 142-160 (207)
72 3ckj_A Putative uncharacterize 20.4 56 0.0019 24.5 2.4 32 46-77 55-86 (329)
No 1
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=98.39 E-value=3.1e-07 Score=74.97 Aligned_cols=107 Identities=10% Similarity=0.052 Sum_probs=79.5
Q ss_pred CCcceecccCCccccchhhHHHhhcCcCc-----------hHHHHHHhc---cCCCee-eccccCCchHHHHHHHHHHHH
Q psy16186 2 SGPWDELESKLKKPCPTKSMLEFENTTHI-----------SSEWEMVLQ---SSQPLW-LGLRCLSSMIHLDLAVEHAMY 66 (111)
Q Consensus 2 sTLWgSFE~~~~rl~~~~~m~Qfa~~~~~-----------~~e~e~~f~---~~lPl~-m~f~g~~~i~~V~dam~~avy 66 (111)
..||-|+|++.+.+...++ .+..+.+.. .++|++... +..|+| ....|+.+++++++.++..+.
T Consensus 273 ~vl~~s~E~s~~~l~~r~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~ 351 (503)
T 1q57_A 273 KVGLAMLEESVEETAEDLI-GLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS 351 (503)
T ss_dssp CEEEEESSSCHHHHHHHHH-HHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHH
T ss_pred cEEEEeccCCHHHHHHHHH-HHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3689999999998887553 566665421 144543221 357888 666677999999999999999
Q ss_pred HhccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 67 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 67 v~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
.+++..||||.||.|.+.. .+.+|......++..|+++|.+.|
T Consensus 352 ~~~~~lvVID~l~~l~~~~-~~~~~~~~~~~~~~~Lk~lak~~~ 394 (503)
T 1q57_A 352 GLGCDVIILDHISIVVSAS-GESDERKMIDNLMTKLKGFAKSTG 394 (503)
T ss_dssp TTCCSEEEEECTTCCCSCC-SCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCEEEEccchhcCCCC-CCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999987543 345788888999999999998765
No 2
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.19 E-value=3.9e-07 Score=73.48 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=82.4
Q ss_pred CcceecccCCccccchhhHHHhhcCcC--------chHHHHHHhc-----cCCCeeeccccCCchHHHHHHHHHHHHHh-
Q psy16186 3 GPWDELESKLKKPCPTKSMLEFENTTH--------ISSEWEMVLQ-----SSQPLWLGLRCLSSMIHLDLAVEHAMYVY- 68 (111)
Q Consensus 3 TLWgSFE~~~~rl~~~~~m~Qfa~~~~--------~~~e~e~~f~-----~~lPl~m~f~g~~~i~~V~dam~~avyv~- 68 (111)
.||-|+||+.+.|...++ ...++.+. -..+|.+... ...|+|..-.++.+++++...++..+..|
T Consensus 77 Vl~fSlEms~~ql~~Rll-s~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~g 155 (338)
T 4a1f_A 77 VAVFSLEMSAEQLALRAL-SDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHK 155 (338)
T ss_dssp EEEEESSSCHHHHHHHHH-HHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCHHHHHHHHH-HHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcC
Confidence 578999999999987653 66666531 2356664211 34799955557778999999999999999
Q ss_pred ccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 69 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 69 dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
++..||||.||.|.+... +.+|......+...|+++|.+.|
T Consensus 156 g~~lIVIDyLqlm~~~~~-~~~r~~ei~~isr~LK~lAkel~ 196 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSGSKA-TKERHEQIAEISRELKTLARELE 196 (338)
T ss_dssp TEEEEEEEEEECCCTHHH-HHHCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEechHHhcCCCC-CCChHHHHHHHHHHHHHHHHHcC
Confidence 999999999999876532 46788889999999999998765
No 3
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.03 E-value=5.9e-06 Score=64.20 Aligned_cols=105 Identities=13% Similarity=0.009 Sum_probs=77.4
Q ss_pred CcceecccCCccccchhhHHHhhcCcC----------chHHHHH------HhccCCCeeeccccCCchHHHHHHHHHHHH
Q psy16186 3 GPWDELESKLKKPCPTKSMLEFENTTH----------ISSEWEM------VLQSSQPLWLGLRCLSSMIHLDLAVEHAMY 66 (111)
Q Consensus 3 TLWgSFE~~~~rl~~~~~m~Qfa~~~~----------~~~e~e~------~f~~~lPl~m~f~g~~~i~~V~dam~~avy 66 (111)
.||-|+|++.+.+...++ ...++.+. -..+|.+ .. ...|+|..-....+++++...++..+.
T Consensus 99 vl~~slE~s~~~l~~R~~-~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l-~~~~i~i~d~~~~~~~~i~~~i~~l~~ 176 (315)
T 3bh0_A 99 VNLHSLEMGKKENIKRLI-VTAGSINAQKIKAARRDFASEDWGKLSMAIGEI-SNSNINIFDKAGQSVNYIWSKTRQTKR 176 (315)
T ss_dssp EEEEESSSCHHHHHHHHH-HHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHH-HTSCEEEECCSCCBHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHH-hCCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999887653 45445431 1133331 12 246888555566789999999999999
Q ss_pred Hhccc--eEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 67 VYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 67 v~dI~--HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
-|++. .||||.||.|-+.. ...+|......+...|+++|.+.|
T Consensus 177 ~~~~~~~lVVID~l~~l~~~~-~~~~r~~~i~~~~~~Lk~lAk~~~ 221 (315)
T 3bh0_A 177 KNPGKRVIVMIDYLQLLEPAK-ANDSRTNQISQISRDLKKMARELD 221 (315)
T ss_dssp TSSSCCEEEEEECGGGSBCSC-TTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCeEEEEeCchhcCCCC-CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999 99999999997632 345777778899999999998765
No 4
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.90 E-value=2e-05 Score=63.70 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=78.5
Q ss_pred CcceecccCCccccchhhHHHhhcCc--------CchHHHHHHhc-----cCCCeeeccccCCchHHHHHHHHHHHHHhc
Q psy16186 3 GPWDELESKLKKPCPTKSMLEFENTT--------HISSEWEMVLQ-----SSQPLWLGLRCLSSMIHLDLAVEHAMYVYD 69 (111)
Q Consensus 3 TLWgSFE~~~~rl~~~~~m~Qfa~~~--------~~~~e~e~~f~-----~~lPl~m~f~g~~~i~~V~dam~~avyv~d 69 (111)
.+|-|+|++.+.+...++ .+..+.+ .-..+|++... ...|+|..-.+..++.++...++..+--++
T Consensus 232 vl~~slE~~~~~l~~R~~-~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~ 310 (444)
T 2q6t_A 232 VGIYSLEMPAAQLTLRMM-CSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQ 310 (444)
T ss_dssp EEEEESSSCHHHHHHHHH-HHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 588999999998886543 4555542 12366664211 246888666677789999999999888899
Q ss_pred cceEEecchhhhhcC--CCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 70 TGHVIIDNVQFMLGL--SDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 70 I~HViiDNLQFmmg~--~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
+..||||.||.|.+. .....+|......+...|+++|.+.|
T Consensus 311 ~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~ 353 (444)
T 2q6t_A 311 VGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELG 353 (444)
T ss_dssp CCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999765 22235778888899999999998755
No 5
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.87 E-value=1.9e-05 Score=64.86 Aligned_cols=105 Identities=13% Similarity=0.007 Sum_probs=78.8
Q ss_pred CcceecccCCccccchhhHHHhhcCc----------CchHHHHH------HhccCCCeeeccccCCchHHHHHHHHHHHH
Q psy16186 3 GPWDELESKLKKPCPTKSMLEFENTT----------HISSEWEM------VLQSSQPLWLGLRCLSSMIHLDLAVEHAMY 66 (111)
Q Consensus 3 TLWgSFE~~~~rl~~~~~m~Qfa~~~----------~~~~e~e~------~f~~~lPl~m~f~g~~~i~~V~dam~~avy 66 (111)
.|+-|+|++.+.+...++ ...++.+ .-..+|.+ .. ...|+|..-.+..+++++...++..+.
T Consensus 228 vl~fSlEms~~ql~~R~~-~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l-~~~~l~i~d~~~~s~~~i~~~ir~l~~ 305 (444)
T 3bgw_A 228 VNLHSLEMGKKENIKRLI-VTAGSINAQKIKAARRDFASEDWGKLSMAIGEI-SNSNINIFDKAGQSVNYIWSKTRQTKR 305 (444)
T ss_dssp EEEECSSSCTTHHHHHHH-HHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHH-HTSCEEEECCSSCBHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999987654 4544542 11234442 22 247898655667899999999999999
Q ss_pred Hhccc--eEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 67 VYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 67 v~dI~--HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
-|++. .||||.||.|-+... +.+|...-..+...++.+|.+.|
T Consensus 306 ~~~~~~~lIVID~Lq~~~~~~~-~~~r~~~i~~i~~~Lk~lAke~~ 350 (444)
T 3bgw_A 306 KNPGKRVIVMIDYLQLLEPAKA-NDSRTNQISQISRDLKKMARELD 350 (444)
T ss_dssp HSCSSCEEEEEECSTTSBCSCS-SSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCeEEEEecHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999 999999999976542 35677777889999999998755
No 6
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.77 E-value=4.1e-05 Score=62.11 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=76.9
Q ss_pred CCcceecccCCccccchhhHHHhhcCc--------CchHHHHHHhc-----cCCCeeeccccCCchHHHHHHHHHHHHHh
Q psy16186 2 SGPWDELESKLKKPCPTKSMLEFENTT--------HISSEWEMVLQ-----SSQPLWLGLRCLSSMIHLDLAVEHAMYVY 68 (111)
Q Consensus 2 sTLWgSFE~~~~rl~~~~~m~Qfa~~~--------~~~~e~e~~f~-----~~lPl~m~f~g~~~i~~V~dam~~avyv~ 68 (111)
..+|-|+|++.+.+...++ .+..|.+ .-..+|++... +..|+|..-.+..++.++...++..+..+
T Consensus 234 ~Vl~~s~E~s~~~l~~r~~-~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~ 312 (454)
T 2r6a_A 234 NVAIFSLEMSAQQLVMRML-CAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQES 312 (454)
T ss_dssp CEEEEESSSCHHHHHHHHH-HHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTT
T ss_pred cEEEEECCCCHHHHHHHHH-HHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3578999999888876543 3333331 22355653211 35788865567779999999999888889
Q ss_pred ccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 69 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 69 dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
++..||||.+|.|.+....+..|...+..+...++++|.+.|
T Consensus 313 ~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 313 GLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp CCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999986543335688888999999999997654
No 7
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.85 E-value=0.002 Score=48.29 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=65.1
Q ss_pred CcceecccCCccccchhhHHHhhcCcC-----c------hHHHHHHhc---cCCCeee-ccccCCchHHHHHHHHHHHHH
Q psy16186 3 GPWDELESKLKKPCPTKSMLEFENTTH-----I------SSEWEMVLQ---SSQPLWL-GLRCLSSMIHLDLAVEHAMYV 67 (111)
Q Consensus 3 TLWgSFE~~~~rl~~~~~m~Qfa~~~~-----~------~~e~e~~f~---~~lPl~m-~f~g~~~i~~V~dam~~avyv 67 (111)
.+|.+.|++.+.+.+.+. .++.+.+. + ..+|++... +..++++ ...+..++.++...+...+..
T Consensus 67 v~~~~~e~~~~~~~~r~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~ 145 (296)
T 1cr0_A 67 VGLAMLEESVEETAEDLI-GLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG 145 (296)
T ss_dssp EEEEESSSCHHHHHHHHH-HHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHT
T ss_pred EEEEeCcCCHHHHHHHHH-HHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 357788887766654332 44444321 1 133433222 2457773 333778899998888877789
Q ss_pred hccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 68 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 68 ~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
++..-||||+++.+.... ...|+...+..++..++++|.+.|
T Consensus 146 ~~p~llilDept~~~~~~-~~~d~~~~~~~i~~~L~~la~~~~ 187 (296)
T 1cr0_A 146 LGCDVIILDHISIVVSAS-GESDERKMIDNLMTKLKGFAKSTG 187 (296)
T ss_dssp TCCSEEEEEEEC------------CHHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEcCccccCCCC-CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988542 246777788899999999986543
No 8
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.0027 Score=45.02 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=58.4
Q ss_pred CcceecccCCccccchhhHHHhhcC-c------C--chHHHHHHhccCCCee-eccccCCchHHHHHHHHHHHHHhccce
Q psy16186 3 GPWDELESKLKKPCPTKSMLEFENT-T------H--ISSEWEMVLQSSQPLW-LGLRCLSSMIHLDLAVEHAMYVYDTGH 72 (111)
Q Consensus 3 TLWgSFE~~~~rl~~~~~m~Qfa~~-~------~--~~~e~e~~f~~~lPl~-m~f~g~~~i~~V~dam~~avyv~dI~H 72 (111)
.++.|+|++.+.+...+ ..+... + . ..+.+.... ...... ....+..+++++++.+..++..+++..
T Consensus 62 v~~~s~E~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (251)
T 2zts_A 62 GVFVTLEERARDLRREM--ASFGWDFEKYEKEGKIAIVDGVSSVV-GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKR 138 (251)
T ss_dssp EEEEESSSCHHHHHHHH--HTTTCCHHHHHHTTSEEEEC--------------------CCHHHHHHHHHHHHHHTTCSE
T ss_pred ceeecccCCHHHHHHHH--HHcCCChHHHHhcCcchhhhhHHHHh-hcccchhccccccccHHHHHHHHHHHHHhcCCcE
Confidence 46789999988877543 232221 0 0 001111111 111112 455677889999999999999999999
Q ss_pred EEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 73 VIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 73 ViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
||||.++.+..... +-....+++..++++|.+.|
T Consensus 139 vviD~~~~l~~~~~----~~~~~~~~~~~L~~~a~~~~ 172 (251)
T 2zts_A 139 LVIDSIPSIALRLE----EERKIREVLLKLNTILLEMG 172 (251)
T ss_dssp EEEECHHHHHHHSS----SGGGHHHHHHHHHHHHHHHC
T ss_pred EEEEcHHHHhhhcc----ChHHHHHHHHHHHHHHHHcC
Confidence 99999998865433 22334567778888886654
No 9
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.18 Score=35.47 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHHHHhccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 51 LSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 51 ~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
..+++++.+.+..++..+++..||||+++.+.+... ..+.+.+..++++|.+.|
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~------~~~~~~l~~l~~~~~~~~ 163 (247)
T 2dr3_A 110 LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKP------AMARSIILQLKRVLAGTG 163 (247)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCG------GGHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCH------HHHHHHHHHHHHHHHHCC
Confidence 457888999999999889999999999999874321 123456677777775543
No 10
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.07 E-value=0.29 Score=37.11 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHH-hccceEEecchhhhhcCCCc----chhhhHHHHHHHHHHHhhhcCCC
Q psy16186 55 IHLDLAVEHAMYV-YDTGHVIIDNVQFMLGLSDS----ALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 55 ~~V~dam~~avyv-~dI~HViiDNLQFmmg~~~~----~~drf~~QD~~I~~fR~fAT~~n 110 (111)
.++++.+...+.- +++.-||||.|+.+...... ..+|-..-.+++..++++|.+.|
T Consensus 189 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~ 249 (322)
T 2i1q_A 189 MLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 249 (322)
T ss_dssp HHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466666666666 88999999999998753211 13455455788899999988765
No 11
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.49 E-value=1.1 Score=30.86 Aligned_cols=51 Identities=22% Similarity=0.063 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHHhccc--eEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCC
Q psy16186 53 SMIHLDLAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLP 109 (111)
Q Consensus 53 ~i~~V~dam~~avyv~dI~--HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~ 109 (111)
+..++.+.+..++..++.. -||||+++.+++... ..+..++..++++|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~------~~~~~~~~~l~~~~~~~ 157 (235)
T 2w0m_A 105 TPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP------AMARKISYYLKRVLNKW 157 (235)
T ss_dssp CHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG------GGHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH------HHHHHHHHHHHHHHHhC
Confidence 7788888888888889999 999999998875432 24577888888887543
No 12
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.16 E-value=0.71 Score=35.44 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHH-hccceEEecchhhhhcCCC----cchhhhHHHHHHHHHHHhhhcCCC
Q psy16186 55 IHLDLAVEHAMYV-YDTGHVIIDNVQFMLGLSD----SALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 55 ~~V~dam~~avyv-~dI~HViiDNLQFmmg~~~----~~~drf~~QD~~I~~fR~fAT~~n 110 (111)
.++++.+...+-- +++.-||||.++.+..... ...+|-....+++..++++|.+.|
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~ 248 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYD 248 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556666666666 8999999999999875321 113555556788889999887654
No 13
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.29 E-value=1.8 Score=30.24 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhccceEEecchhhhhcCCCcc----hhhhHHHHHHHHHHHhhhcCC
Q psy16186 57 LDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSA----LDRFYMQDTIIQVLLYFLSLP 109 (111)
Q Consensus 57 V~dam~~avyv~dI~HViiDNLQFmmg~~~~~----~drf~~QD~~I~~fR~fAT~~ 109 (111)
+++.+...+..+++.-||||+++.++...-.+ .+|-.....++..++++|.+.
T Consensus 107 ~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~ 163 (243)
T 1n0w_A 107 LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF 163 (243)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445556666899999999999887643221 344444567788888887653
No 14
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.77 E-value=1.7 Score=33.79 Aligned_cols=57 Identities=16% Similarity=0.000 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHH--hccceEEecchhhhhcCCCc----chhhhHHHHHHHHHHHhhhcCCC
Q psy16186 54 MIHLDLAVEHAMYV--YDTGHVIIDNVQFMLGLSDS----ALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 54 i~~V~dam~~avyv--~dI~HViiDNLQFmmg~~~~----~~drf~~QD~~I~~fR~fAT~~n 110 (111)
+.++++.++..+.- +++.-||||.++.+...... ..+|-..-..++..++++|.+.|
T Consensus 202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~ 264 (343)
T 1v5w_A 202 QMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN 264 (343)
T ss_dssp HHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555666665 89999999999998754211 13454445778888888887654
No 15
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.04 E-value=1.4 Score=30.41 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=35.2
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcCC
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLP 109 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~~ 109 (111)
+.....+.++.++..+-- +..-||||+++.++........|...-..++..++++|.+.
T Consensus 87 ~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 87 DFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp TTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 333344455544333222 68899999999877543322344444566777888887653
No 16
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Probab=78.80 E-value=1.5 Score=31.70 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=28.6
Q ss_pred ee-eccccCCchHHHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 44 LW-LGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 44 l~-m~f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
++ .+=-|..=...++.+++|||++.+|.||| .+|...
T Consensus 52 lfviRnagn~v~~~~~~sleyAv~~L~v~~Iv------V~GH~~ 89 (170)
T 1g5c_A 52 AKVIKNAGNIVDDGVIRSAAVAIYALGDNEII------IVGHTD 89 (170)
T ss_dssp CEEEEETTCCCCHHHHHHHHHHHHHHCCCEEE------EEEESS
T ss_pred EEEEecccccCCHHHHHHHHHHHHhcCCCEEE------EEccCC
Confidence 45 55445544448999999999999999999 577775
No 17
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=72.53 E-value=8.7 Score=30.66 Aligned_cols=34 Identities=12% Similarity=-0.066 Sum_probs=29.0
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEecchhhhhc
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG 83 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg 83 (111)
...+++++++.++..+--+++.-||||.|+.|..
T Consensus 133 ~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 133 QPDNGEQALEIMELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCC
T ss_pred cCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhcc
Confidence 4457889999888877778999999999999985
No 18
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.01 E-value=5.9 Score=32.09 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhccceEEecchhhhhcCCCcc----hhhhHHHHHHHHHHHhhhcCCC
Q psy16186 56 HLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSA----LDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HViiDNLQFmmg~~~~~----~drf~~QD~~I~~fR~fAT~~n 110 (111)
+.++.+...+..+++.-||||+++.++.....+ .+|-..-..++..|+++|.+.|
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g 318 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG 318 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444555566899999999999988654322 3454444788999999987654
No 19
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Probab=70.91 E-value=2.8 Score=31.51 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhccceEEe
Q psy16186 56 HLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HVii 75 (111)
.++.+++|||++-+|.|||+
T Consensus 90 ~~~asleyAv~~L~v~~IvV 109 (221)
T 1ekj_A 90 GTGAAIEYAVLHLKVSNIVV 109 (221)
T ss_dssp HHHHHHHHHHHTSCCSEEEE
T ss_pred hhHHHHHHHHHhcCCCEEEE
Confidence 57889999999999999995
No 20
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A
Probab=67.58 E-value=3.2 Score=31.10 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 55 IHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 55 ~~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
..++.+++|||++-+|.||| .+|...
T Consensus 89 ~~~~~sleyAV~~L~v~~Iv------V~GHs~ 114 (215)
T 1ym3_A 89 SAVLGSIEYAVTVLNVPLIV------VLGHDS 114 (215)
T ss_dssp HHHHHHHHHHHHTSCCCEEE------EEEESS
T ss_pred HhHHHHHHHHHHhcCCCEEE------EecccC
Confidence 46899999999999999999 466654
No 21
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis}
Probab=67.30 E-value=4.3 Score=29.61 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=29.3
Q ss_pred ee-eccccCCchHHHHHHHHHHHHHhccceEEecchhhhhcCCCc
Q psy16186 44 LW-LGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDS 87 (111)
Q Consensus 44 l~-m~f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~~~ 87 (111)
++ .+=-|..=...++.+++|||++.+|.||| .+|...=
T Consensus 62 lFViRNaGn~v~~~~~~sleyav~~L~v~~Iv------V~GH~~C 100 (172)
T 1ylk_A 62 AHVIRNAGCVVTDDVIRSLAISQRLLGTREII------LLHHTDC 100 (172)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHTTCCCEEE------EEEESSC
T ss_pred EEEEeccCCcCCHHHHHHHHHHHHhcCCCEEE------EEccCCC
Confidence 44 55556555567999999999999999999 5776653
No 22
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=67.15 E-value=3.8 Score=30.67 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHhccceEEecchhhh
Q psy16186 53 SMIHLDLAVEHAMYVYDTGHVIIDNVQFM 81 (111)
Q Consensus 53 ~i~~V~dam~~avyv~dI~HViiDNLQFm 81 (111)
+.+++.+.++..+.-.+..-||||++||+
T Consensus 73 ~~~~i~~~i~~~~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 73 SAPEILNYIMSNSFNDETKVIGIDEVQFF 101 (223)
T ss_dssp STHHHHHHHHSTTSCTTCCEEEECSGGGS
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEecCccC
Confidence 34566666655444446788999999994
No 23
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A
Probab=65.45 E-value=4.1 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 56 HLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
.++-+++|||++-+|.||| .+|...
T Consensus 106 ~~~asleyAV~~L~V~~Iv------V~GHs~ 130 (243)
T 2w3q_A 106 SSQALLNYAIMNVGVTHVM------VVGHTG 130 (243)
T ss_dssp HHHHHHHHHHHTTCCCEEE------EEEETT
T ss_pred hhHHHHHHHHHhcCCCEEE------EeccCC
Confidence 4788999999999999999 466554
No 24
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.74 E-value=18 Score=28.91 Aligned_cols=63 Identities=6% Similarity=-0.033 Sum_probs=41.6
Q ss_pred cccCCchHHHHHHHHHHHHHhccceEEecchhhhhcCC---Ccchhh-----hHHHHHHHHHHHhhhcCCC
Q psy16186 48 LRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLS---DSALDR-----FYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 48 f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~---~~~~dr-----f~~QD~~I~~fR~fAT~~n 110 (111)
+....+++++++.++..+--..+..||||.++-+.+.. ...-+| =..-..++..++++|.+.|
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~ 188 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSK 188 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34466788999988888777889999999999887611 111111 1112345666778887655
No 25
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A
Probab=61.61 E-value=5.3 Score=30.44 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 56 HLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
.++.++||||++-+|.||| .+|...
T Consensus 79 ~~~~sleyAV~~L~v~~Iv------V~GHt~ 103 (223)
T 3qy1_A 79 NCLSVVQYAVDVLEVEHII------ICGHSG 103 (223)
T ss_dssp HHHHHHHHHHHTTCCSEEE------EEEETT
T ss_pred hhHHHHHHHHHhcCCCEEE------EECCCC
Confidence 4889999999999999999 477664
No 26
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=57.55 E-value=8.6 Score=30.54 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=24.0
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEe
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HVii 75 (111)
+..+++.+++.++|.+-+.+++||.|
T Consensus 221 ~~~t~~~~~~hi~~i~~~~G~dhVgi 246 (325)
T 2i5g_A 221 IDSTIDDYAEAIEYVMNIVGEDAIGI 246 (325)
T ss_dssp GGCBHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 56789999999999999999999986
No 27
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=55.53 E-value=9.3 Score=31.58 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=23.7
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEe
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HVii 75 (111)
+..++++|+|.++|.+-+-+|.||-|
T Consensus 331 ~~~tl~~~~~Hidhi~~~~G~dhVGi 356 (417)
T 3b40_A 331 PKAGLKELVDAIDYTVKKVGIDHVGI 356 (417)
T ss_dssp CCCBHHHHHHHHHHHHHHHCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence 45689999999999999999999986
No 28
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0
Probab=52.14 E-value=10 Score=27.66 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=34.9
Q ss_pred eccccCCchHHHHHHHHHHHHHhccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHh
Q psy16186 46 LGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLY 104 (111)
Q Consensus 46 m~f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~ 104 (111)
.+=-|..=...++.+++|||+.-++.||| .+|...-+.-++.. +.+++.+++
T Consensus 59 ~Rn~gn~v~~~~~~sl~~av~~l~v~~Iv------V~gH~~CG~~~a~~-~~l~~~l~~ 110 (166)
T 3las_A 59 LRNAGGRVTDDVIRSLVISEQQLGTSEIV------VLHHTDCGAQTFTN-AEFTEQLKR 110 (166)
T ss_dssp EEEGGGCCCHHHHHHHHHHHHTTCCCEEE------EEEETTCGGGSCCH-HHHHHHHHH
T ss_pred EEccCcccChhhHHHHHHHHHhcCCCEEE------EEeecCCCceeeCH-HHHHHHHHH
Confidence 44445544457999999999999999999 58887654333332 235555543
No 29
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae}
Probab=51.56 E-value=9.9 Score=28.94 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhccceEEe
Q psy16186 56 HLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HVii 75 (111)
.++.+++|||++-+|.|||+
T Consensus 85 ~~~~sleyav~~L~v~~IvV 104 (216)
T 3eyx_A 85 TLKATLEFAIICLKVNKVII 104 (216)
T ss_dssp HHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEE
Confidence 48999999999999999994
No 30
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.35 E-value=14 Score=25.33 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=34.3
Q ss_pred HHHHHHHHH-----HhccceEEecchhhhhcCCCcc----hhhhHHHHHHHHHHHhhhcCC
Q psy16186 58 DLAVEHAMY-----VYDTGHVIIDNVQFMLGLSDSA----LDRFYMQDTIIQVLLYFLSLP 109 (111)
Q Consensus 58 ~dam~~avy-----v~dI~HViiDNLQFmmg~~~~~----~drf~~QD~~I~~fR~fAT~~ 109 (111)
++.+...+. .++..-||||++.-++.....+ ..|-.....++..+++++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~ 169 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY 169 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHC
Confidence 444444444 6799999999998876543322 344444567888888887653
No 31
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=50.88 E-value=12 Score=30.83 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=24.0
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEe
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HVii 75 (111)
+..+++.|+|-++|.+-+-+|+||-|
T Consensus 292 ~~atl~dv~~HIdhi~~l~G~dhVgi 317 (400)
T 3id7_A 292 PVATVSTVADHLDHMREVAGVDHLGI 317 (400)
T ss_dssp CCCBHHHHHHHHHHHHHHHCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 56789999999999999999999985
No 32
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A
Probab=50.87 E-value=10 Score=29.02 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 56 HLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
.++-+++|||++-+|.|||| +|...
T Consensus 81 ~~~~sleyav~~L~v~~IvV------~GHt~ 105 (227)
T 3ucj_A 81 NCMSCLEYTVDHLKIKHILV------CGHYN 105 (227)
T ss_dssp HHHHHHHHHHHTSCCSEEEE------EEETT
T ss_pred hHHHHHHHHHHhcCCCEEEE------ECCCC
Confidence 58999999999999999994 66554
No 33
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=50.38 E-value=12 Score=29.62 Aligned_cols=34 Identities=6% Similarity=-0.093 Sum_probs=28.1
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEecchhhhhc
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG 83 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg 83 (111)
...+++++++.++..+--+++.-||||.++-|..
T Consensus 122 ~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 122 QPDTGEQALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 3456788888888777788999999999999875
No 34
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=49.12 E-value=14 Score=30.57 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHHHHhccceEEe
Q psy16186 51 LSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 51 ~~~i~~V~dam~~avyv~dI~HVii 75 (111)
..++++|+|.++|.+-+-+|+||-|
T Consensus 333 ~atl~~~~~Hidhi~~~~G~dhVgi 357 (417)
T 2rag_A 333 RGDFDLYMKSMLHVLKVAGPKGVCV 357 (417)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCceEEE
Confidence 4579999999999999999999986
No 35
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=48.51 E-value=23 Score=34.37 Aligned_cols=37 Identities=5% Similarity=-0.140 Sum_probs=32.1
Q ss_pred ccccCCchHHHHHHHHHHHHHhccceEEecchhhhhc
Q psy16186 47 GLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG 83 (111)
Q Consensus 47 ~f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg 83 (111)
-+...++++++++.++..+.-+++.-||||.||.|.+
T Consensus 788 ~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred EEecCCcHHHHHHHHHHHHHccCCCEEEEechhhhcc
Confidence 3445678999999999999999999999999999874
No 36
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1
Probab=47.84 E-value=11 Score=31.79 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhccceEEe
Q psy16186 56 HLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HVii 75 (111)
.++-+++|||++-+|.|||+
T Consensus 362 ~~~asleyAV~~L~v~~IvV 381 (496)
T 1ddz_A 362 SFLSVLQYAVQYLKVKRVVV 381 (496)
T ss_dssp HHHHHHHHHHHTSCCSEEEE
T ss_pred chhhhHHHHHHhcCCCEEEE
Confidence 68899999999999999994
No 37
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Probab=47.53 E-value=13 Score=28.68 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 56 HLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
.++.+++|||++-+|.|||+ +|...
T Consensus 76 ~~~~sleyav~~L~v~~IvV------~GHt~ 100 (229)
T 3e3i_A 76 NCLSVVQYAVDVLKIEHIII------CGHTN 100 (229)
T ss_dssp HHHHHHHHHHHTSCCCEEEE------EEESS
T ss_pred hhHHHHHHHHHhcCCCEEEE------ECCCC
Confidence 58899999999999999994 66654
No 38
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=46.87 E-value=16 Score=29.78 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=23.7
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEe
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HVii 75 (111)
+..+++.+++.++|.+-+.+++||-|
T Consensus 260 ~~~t~~~~~~hi~hi~~~~G~dhVgi 285 (369)
T 1itu_A 260 NKANLSQVADHLDHIKEVAGARAVGF 285 (369)
T ss_dssp SCCBHHHHHHHHHHHHHHHCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence 45689999999999999999999985
No 39
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1
Probab=42.50 E-value=15 Score=31.12 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 56 HLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 56 ~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
.++-+++|||++-+|.|||+ +|...
T Consensus 108 ~~~asleyAV~~L~V~~IvV------~GHs~ 132 (496)
T 1ddz_A 108 SFLSVLQYAVQYLKVKHILV------CGHYG 132 (496)
T ss_dssp HHHHHHHHHHHTSCCSEEEE------EEETT
T ss_pred chhhHHHHHHHhcCCCEEEE------ECCCC
Confidence 48899999999999999994 66554
No 40
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=40.02 E-value=22 Score=28.41 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=23.7
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEe
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HVii 75 (111)
+..+++.|++.++|.+.+-++.||=|
T Consensus 235 ~~~tl~~~~~Hi~hi~~l~G~dhVgi 260 (318)
T 3neh_A 235 GVADTEDVIRHIDHICELGGLKNIGF 260 (318)
T ss_dssp SCCBHHHHHHHHHHHHHTTCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 55689999999999999999999974
No 41
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=39.36 E-value=83 Score=21.59 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHHHHhccceEEecchhhhhcC
Q psy16186 51 LSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGL 84 (111)
Q Consensus 51 ~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~ 84 (111)
..+++++.+.+..++..++.+-||||+..-++..
T Consensus 117 ~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~ 150 (251)
T 2ehv_A 117 RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhh
Confidence 3467888999998999999999999999877753
No 42
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=39.17 E-value=11 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.9
Q ss_pred hccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhh
Q psy16186 68 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFL 106 (111)
Q Consensus 68 ~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fA 106 (111)
-++.-|+|||.||+- +.+|+.++++|
T Consensus 100 ~~~dvV~IDEaQFf~-------------~~~v~~l~~la 125 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFD-------------DEIVSIVEKLS 125 (219)
T ss_dssp TTCSEEEECCGGGSC-------------THHHHHHHHHH
T ss_pred cCCCEEEEechhcCC-------------HHHHHHHHHHH
Confidence 478899999999952 24566666666
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=38.75 E-value=80 Score=30.39 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=45.0
Q ss_pred HHHHHHhccCCCee-eccccCCchH--------------HHHHHHH----HHHHHhccceEEecchhhhhcCCCcchhhh
Q psy16186 32 SEWEMVLQSSQPLW-LGLRCLSSMI--------------HLDLAVE----HAMYVYDTGHVIIDNVQFMLGLSDSALDRF 92 (111)
Q Consensus 32 ~e~e~~f~~~lPl~-m~f~g~~~i~--------------~V~dam~----~avyv~dI~HViiDNLQFmmg~~~~~~drf 92 (111)
.+|...|...+.+. ..+.|.++.+ +-+|.+- ..-++.+|..|||||+..| |.. |.
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l-~d~-----rg 1063 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI-GGE-----NG 1063 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG-GST-----TH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc-CCC-----CC
Confidence 67777787666665 6677776654 2233332 3456789999999999955 422 33
Q ss_pred HHHHHHHHHHHhhhc
Q psy16186 93 YMQDTIIQVLLYFLS 107 (111)
Q Consensus 93 ~~QD~~I~~fR~fAT 107 (111)
..=..+|..+|..++
T Consensus 1064 ~~le~il~rl~~i~~ 1078 (1724)
T 4f92_B 1064 PVLEVICSRMRYISS 1078 (1724)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 444567777776654
No 44
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=37.99 E-value=11 Score=26.59 Aligned_cols=13 Identities=62% Similarity=0.859 Sum_probs=11.3
Q ss_pred ccceEEecchhhh
Q psy16186 69 DTGHVIIDNVQFM 81 (111)
Q Consensus 69 dI~HViiDNLQFm 81 (111)
+..-|||||.||+
T Consensus 76 ~~dvviIDE~Q~~ 88 (184)
T 2orw_A 76 DTRGVFIDEVQFF 88 (184)
T ss_dssp TEEEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 5678999999995
No 45
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=37.99 E-value=12 Score=28.28 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=10.8
Q ss_pred ccceEEecchhh
Q psy16186 69 DTGHVIIDNVQF 80 (111)
Q Consensus 69 dI~HViiDNLQF 80 (111)
++.-|+|||.||
T Consensus 101 ~~dvViIDEaQF 112 (214)
T 2j9r_A 101 EMDVIAIDEVQF 112 (214)
T ss_dssp SCCEEEECCGGG
T ss_pred CCCEEEEECccc
Confidence 477899999999
No 46
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=37.74 E-value=24 Score=28.84 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHHHHHHhccceEEe
Q psy16186 51 LSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 51 ~~~i~~V~dam~~avyv~dI~HVii 75 (111)
..+++.|++.++|.+-+-+++||-|
T Consensus 279 ~~tl~~~~~Hi~hi~~l~G~dhVgi 303 (364)
T 3ly0_A 279 EMGWEPVLRHLDHLIDRLGEDHVGM 303 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 3589999999999999999999974
No 47
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=35.99 E-value=13 Score=27.71 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.4
Q ss_pred hccceEEecchhhh
Q psy16186 68 YDTGHVIIDNVQFM 81 (111)
Q Consensus 68 ~dI~HViiDNLQFm 81 (111)
-++.-|+||+.||+
T Consensus 90 ~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF 103 (195)
T ss_dssp HTCSEEEESSGGGC
T ss_pred cCCCEEEEEchhhh
Confidence 46889999999998
No 48
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=34.98 E-value=15 Score=26.62 Aligned_cols=12 Identities=58% Similarity=0.816 Sum_probs=10.8
Q ss_pred ccceEEecchhh
Q psy16186 69 DTGHVIIDNVQF 80 (111)
Q Consensus 69 dI~HViiDNLQF 80 (111)
+..-|+|||.||
T Consensus 81 ~~dvViIDEaqf 92 (191)
T 1xx6_A 81 DTEVIAIDEVQF 92 (191)
T ss_dssp TCSEEEECSGGG
T ss_pred cCCEEEEECCCC
Confidence 478999999999
No 49
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=34.95 E-value=37 Score=24.75 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=27.7
Q ss_pred HHhccceEEecchhhhhcCCCcchhhhHHHHHHHHHHHhhhcC
Q psy16186 66 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSL 108 (111)
Q Consensus 66 yv~dI~HViiDNLQFmmg~~~~~~drf~~QD~~I~~fR~fAT~ 108 (111)
.+.+..-||||+++-+.+..... -.....++..++++|.+
T Consensus 130 l~~~~~livlDe~~~~~~~d~~~---~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 130 AAEGRRLMVLDTLRRFHIEEENA---SGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTC---HHHHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEECCHHHhcCCCcCc---hHHHHHHHHHHHHHHHH
Confidence 34589999999999887763211 13346778888888754
No 50
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=33.85 E-value=15 Score=28.27 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.0
Q ss_pred hccceEEecchhhhh
Q psy16186 68 YDTGHVIIDNVQFML 82 (111)
Q Consensus 68 ~dI~HViiDNLQFmm 82 (111)
-++.-|+|||.||..
T Consensus 89 ~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP 103 (234)
T ss_dssp TTCSEEEESSGGGCT
T ss_pred ccCCEEEEEchhhhh
Confidence 567899999999984
No 51
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A*
Probab=32.52 E-value=37 Score=25.60 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=26.4
Q ss_pred eccccCCchHHHHHHHHHHHHHhccceEEecchhhhhcCCC
Q psy16186 46 LGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSD 86 (111)
Q Consensus 46 m~f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg~~~ 86 (111)
.+=-|..=...++.+++|||+.-++.|||+ +|...
T Consensus 56 iRNaGn~v~~~~~~sl~~av~~L~v~~IvV------~GHt~ 90 (204)
T 3teo_A 56 YRNAGGIVTDDAIRSASLTTNFFGTKEIIV------VTHTD 90 (204)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHSCCCEEEE------EEETT
T ss_pred EEeeCCccCcchhhHHHHHHHhcCCCEEEE------EeecC
Confidence 444455444578899999999999999994 66654
No 52
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=32.23 E-value=16 Score=24.27 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=8.5
Q ss_pred hccceEEecc
Q psy16186 68 YDTGHVIIDN 77 (111)
Q Consensus 68 ~dI~HViiDN 77 (111)
-+|.|||+|+
T Consensus 49 ~~vTHVVvd~ 58 (106)
T 2jw5_A 49 PGVTHIVVDE 58 (106)
T ss_dssp TTCCEEEECS
T ss_pred CCccEEEEcC
Confidence 4799999995
No 53
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein S glycoprotein, hydrolase, metal-binding, metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A* 3d67_A*
Probab=31.76 E-value=36 Score=27.64 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccceE-EecchhhhhcCCC-----------cchhhhHHHHHHHHHHHhhhcCC
Q psy16186 59 LAVEHAMYVYDTGHV-IIDNVQFMLGLSD-----------SALDRFYMQDTIIQVLLYFLSLP 109 (111)
Q Consensus 59 dam~~avyv~dI~HV-iiDNLQFmmg~~~-----------~~~drf~~QD~~I~~fR~fAT~~ 109 (111)
++++.-.-.++|.|- +|+|||-++-.+. ...++|+--|.+.+.++++|.++
T Consensus 56 ~~~~~~l~~~~~~~~v~i~d~~~~i~~~~~~~~~~~~~~~~~~~~Y~t~~ei~~~l~~L~~~~ 118 (401)
T 3dgv_A 56 SNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTISPRASSSYYEQYHSLNEIYSWIEVMTERY 118 (401)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHHHHHTTTSSSSCTTCTTGGGSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCeEEEEhHHHHHHHHHhhhhhcccccccCCCccccCCHHHHHHHHHHHHHHC
Confidence 334444445788865 6899998875321 13778999999999999998764
No 54
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=29.09 E-value=68 Score=21.40 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHhccceEEecchhhhhcC
Q psy16186 66 YVYDTGHVIIDNVQFMLGL 84 (111)
Q Consensus 66 yv~dI~HViiDNLQFmmg~ 84 (111)
...++..|||||..-+.+.
T Consensus 159 ~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp CGGGCSEEEETTC------
T ss_pred chhcccEEEEECchhhccC
Confidence 3578999999999988643
No 55
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=27.04 E-value=1.2e+02 Score=30.24 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=30.9
Q ss_pred cccCCchHHHHHHHHHHHHHhccceEEecchhhhhc
Q psy16186 48 LRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG 83 (111)
Q Consensus 48 f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg 83 (111)
+....+++++++.++..+.-+++.-||||.||-|..
T Consensus 440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 334578899999999888889999999999999874
No 56
>4eq6_B Platinum sensitivity protein 3; DNA binding protein; 1.80A {Saccharomyces cerevisiae} PDB: 4dt1_B
Probab=26.88 E-value=49 Score=26.36 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=25.3
Q ss_pred cceEEecchhhhhcCC-----CcchhhhHHHHHHHHHHHhh
Q psy16186 70 TGHVIIDNVQFMLGLS-----DSALDRFYMQDTIIQVLLYF 105 (111)
Q Consensus 70 I~HViiDNLQFmmg~~-----~~~~drf~~QD~~I~~fR~f 105 (111)
..-||||||-+.---. ....-.|..=-+++..+|++
T Consensus 144 LsgIIIDNlSy~~~d~~~n~~~~~~~~~~~L~kiLk~Lr~t 184 (256)
T 4eq6_B 144 LRGIVIDNLSFLNFESDKNYDVINLSKFEKLFKILRKLREF 184 (256)
T ss_dssp EEEEEEECGGGCC----------CHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEcchhhhccCccccccccchHHHHHHHHHHHHHHHh
Confidence 4579999998875221 13467888888899998875
No 57
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=26.87 E-value=40 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHHHHhccceEEec
Q psy16186 51 LSSMIHLDLAVEHAMYVYDTGHVIID 76 (111)
Q Consensus 51 ~~~i~~V~dam~~avyv~dI~HViiD 76 (111)
.....++.+.+..++.-+++.+||||
T Consensus 24 ~~~a~~l~~~ll~~i~~~~~~~vIlD 49 (123)
T 3zxn_A 24 DQSVIQFKEELLHNITGVAGKGLVID 49 (123)
T ss_dssp CHHHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34467788888888888999999999
No 58
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=26.52 E-value=52 Score=25.72 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=28.1
Q ss_pred ccCCchHHHHHHHHHHHHHhccceEEecchhhhhc
Q psy16186 49 RCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG 83 (111)
Q Consensus 49 ~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg 83 (111)
....+++++++.++..+--+++.-||||.++.+..
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred ecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 34557888888877777678899999999999874
No 59
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=26.51 E-value=74 Score=24.64 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHH-----hccceEEecchhhhhcCCCc----chhhhHHHHHHHHHHHhhhcCCC
Q psy16186 54 MIHLDLAVEHAMYV-----YDTGHVIIDNVQFMLGLSDS----ALDRFYMQDTIIQVLLYFLSLPN 110 (111)
Q Consensus 54 i~~V~dam~~avyv-----~dI~HViiDNLQFmmg~~~~----~~drf~~QD~~I~~fR~fAT~~n 110 (111)
..++++.+...+.- .++.-||||++.-++..... -.+|-....+++..++++|.+.|
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~ 276 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD 276 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566655554544 68999999999887743211 13455556778888998886554
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=25.78 E-value=35 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.5
Q ss_pred HhccceEEecchhhhhcCC
Q psy16186 67 VYDTGHVIIDNVQFMLGLS 85 (111)
Q Consensus 67 v~dI~HViiDNLQFmmg~~ 85 (111)
..++..|||||..-|.+.+
T Consensus 144 ~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp CTTCCEEEEETHHHHTSTT
T ss_pred cccCCEEEEEChHHhHhhC
Confidence 4578999999999887643
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=25.45 E-value=35 Score=23.77 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHHH--HHHhccceEEecchhhhhcCC
Q psy16186 56 HLDLAVEHA--MYVYDTGHVIIDNVQFMLGLS 85 (111)
Q Consensus 56 ~V~dam~~a--vyv~dI~HViiDNLQFmmg~~ 85 (111)
.+.+.+... ....++.+|||||..-|.+.+
T Consensus 156 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~ 187 (236)
T 2pl3_A 156 RLLQHMDETVSFHATDLQMLVLDEADRILDMG 187 (236)
T ss_dssp HHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHhcCCcccccccEEEEeChHHHhcCC
Confidence 344444432 334688999999999887654
No 62
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.96 E-value=1.1e+02 Score=29.75 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=30.6
Q ss_pred cccCCchHHHHHHHHHHHHHhccceEEecchhhhhc
Q psy16186 48 LRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG 83 (111)
Q Consensus 48 f~g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg 83 (111)
.....+++++++.++..+.-+++.-||||.||-|..
T Consensus 440 i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~ 475 (1706)
T 3cmw_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 475 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhc
Confidence 345567899999988888889999999999999874
No 63
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=22.55 E-value=50 Score=20.06 Aligned_cols=23 Identities=4% Similarity=-0.182 Sum_probs=13.7
Q ss_pred HHHHHHHHhccce-EEecchhhhh
Q psy16186 60 AVEHAMYVYDTGH-VIIDNVQFML 82 (111)
Q Consensus 60 am~~avyv~dI~H-ViiDNLQFmm 82 (111)
+.+...-.++|.| |+|+|||-++
T Consensus 52 ~f~~~L~~~~i~~~v~i~dvq~~i 75 (79)
T 1vjq_A 52 WFLEMLKAKGIPFTVYVEEGGSEN 75 (79)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC--
T ss_pred HHHHHHHHCCCcEEEEehhHHHHH
Confidence 3444444678876 6678988665
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=22.45 E-value=32 Score=24.11 Aligned_cols=33 Identities=6% Similarity=0.089 Sum_probs=23.4
Q ss_pred chHHHHHHHHHH---HHHhccceEEecchhhhhcCC
Q psy16186 53 SMIHLDLAVEHA---MYVYDTGHVIIDNVQFMLGLS 85 (111)
Q Consensus 53 ~i~~V~dam~~a---vyv~dI~HViiDNLQFmmg~~ 85 (111)
+...+.+.+... ....++.+|||||..-|.+.+
T Consensus 156 Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp CHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred CHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 345566666543 345679999999999988744
No 65
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=22.14 E-value=1.5e+02 Score=29.50 Aligned_cols=61 Identities=10% Similarity=-0.047 Sum_probs=40.5
Q ss_pred cCCchHHHHHHHHHHHHHhccceEEecchhhhhc-CC--Ccchhhh-HHHH----HHHHHHHhhhcCCC
Q psy16186 50 CLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLG-LS--DSALDRF-YMQD----TIIQVLLYFLSLPN 110 (111)
Q Consensus 50 g~~~i~~V~dam~~avyv~dI~HViiDNLQFmmg-~~--~~~~drf-~~QD----~~I~~fR~fAT~~n 110 (111)
...+++++.+.++...--+.+.-||||.||-|-. .. ...-+|- ..+. .++..+.++|.+.|
T Consensus 791 ~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~ 859 (2050)
T 3cmu_A 791 QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 859 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 5578889888887766668999999999999875 11 1101111 2223 35557788887765
No 66
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=21.98 E-value=46 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHhccceEEecchh
Q psy16186 53 SMIHLDLAVEHAMYVYDTGHVIIDNVQ 79 (111)
Q Consensus 53 ~i~~V~dam~~avyv~dI~HViiDNLQ 79 (111)
+...+++.++. ...++.+|||||.-
T Consensus 162 Tpg~l~~~l~~--~l~~~~~lVlDEah 186 (235)
T 3llm_A 162 TVGVLLRKLEA--GIRGISHVIVDEIH 186 (235)
T ss_dssp EHHHHHHHHHH--CCTTCCEEEECCTT
T ss_pred CHHHHHHHHHh--hhcCCcEEEEECCc
Confidence 34666677665 47899999999996
No 67
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.93 E-value=68 Score=22.14 Aligned_cols=24 Identities=25% Similarity=0.021 Sum_probs=19.4
Q ss_pred ccCCchHHHHHHHHHHHHHhccceEEe
Q psy16186 49 RCLSSMIHLDLAVEHAMYVYDTGHVII 75 (111)
Q Consensus 49 ~g~~~i~~V~dam~~avyv~dI~HVii 75 (111)
.+..++.-++|+|+.| -.+.++||
T Consensus 91 k~~~Dv~laiD~~~~a---~~~d~~vL 114 (165)
T 2qip_A 91 KGDWDVGITLDAIEIA---PDVDRVIL 114 (165)
T ss_dssp SCCCHHHHHHHHHHHG---GGCSEEEE
T ss_pred CCCccHHHHHHHHHhh---ccCCEEEE
Confidence 3667788999999997 67888884
No 68
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=21.38 E-value=90 Score=21.55 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=27.0
Q ss_pred eccccCCchHHHHHHHHHHHHHhccceE---Eecch
Q psy16186 46 LGLRCLSSMIHLDLAVEHAMYVYDTGHV---IIDNV 78 (111)
Q Consensus 46 m~f~g~~~i~~V~dam~~avyv~dI~HV---iiDNL 78 (111)
+-.+|.++..+|+..++.+.-.|-=+|| =+||.
T Consensus 59 lPmf~~~d~~~Vl~Ele~C~k~~p~~yVRligfD~~ 94 (109)
T 1rbl_M 59 LPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNI 94 (109)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETT
T ss_pred cCCcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 4469999999999999999999986665 45654
No 69
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=21.32 E-value=95 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.5
Q ss_pred eccccCCchHHHHHHHHHHHHHhccceE---Eecch
Q psy16186 46 LGLRCLSSMIHLDLAVEHAMYVYDTGHV---IIDNV 78 (111)
Q Consensus 46 m~f~g~~~i~~V~dam~~avyv~dI~HV---iiDNL 78 (111)
+-.+|.++..+|+.+++.+.-.|-=+|| =+||.
T Consensus 58 lPmf~~~d~~~Vl~Ele~C~k~~p~~yVRliGfD~~ 93 (118)
T 3zxw_B 58 LPLFNCTNAQDVLNEVQQCRSEYPNCFIRVVAFDNI 93 (118)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETT
T ss_pred cCCcCCCCHHHHHHHHHHHHHHCCCceEEEEEEeCC
Confidence 5569999999999999999999986665 45764
No 70
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=21.02 E-value=1e+02 Score=21.31 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=27.1
Q ss_pred eccccCCchHHHHHHHHHHHHHhccceE---Eecch
Q psy16186 46 LGLRCLSSMIHLDLAVEHAMYVYDTGHV---IIDNV 78 (111)
Q Consensus 46 m~f~g~~~i~~V~dam~~avyv~dI~HV---iiDNL 78 (111)
+-.+|.++..+|+..++.+.-.|-=+|| =+||.
T Consensus 61 lPmf~~~d~~~Vl~El~~C~k~~p~~yVRligfD~~ 96 (110)
T 1svd_M 61 LPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNY 96 (110)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHSTTSEEEEEEEETT
T ss_pred cCCcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 5569999999999999999999986665 45654
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=20.49 E-value=53 Score=22.03 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.4
Q ss_pred HhccceEEecchhhhhcCC
Q psy16186 67 VYDTGHVIIDNVQFMLGLS 85 (111)
Q Consensus 67 v~dI~HViiDNLQFmmg~~ 85 (111)
..++..|||||..-|.+.+
T Consensus 142 ~~~~~~iViDEah~~~~~~ 160 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMG 160 (207)
T ss_dssp CTTCSEEEEESHHHHHHTT
T ss_pred hhhceEEEEEChhHhhccc
Confidence 4578999999999887654
No 72
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=20.45 E-value=56 Score=24.49 Aligned_cols=32 Identities=6% Similarity=-0.034 Sum_probs=27.1
Q ss_pred eccccCCchHHHHHHHHHHHHHhccceEEecc
Q psy16186 46 LGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDN 77 (111)
Q Consensus 46 m~f~g~~~i~~V~dam~~avyv~dI~HViiDN 77 (111)
-.|+....|.+.++.+....|-.+.+-||+||
T Consensus 55 p~yN~~~~l~~~l~sl~~q~~~~~~eiivVDd 86 (329)
T 3ckj_A 55 PALDEEDTIGSVIDSISPLVDGLVDELIVLDS 86 (329)
T ss_dssp EESSCTTTHHHHHHHHGGGBTTTBSEEEEEEC
T ss_pred eeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeC
Confidence 55778888999999998888776789999997
Done!