RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16186
         (111 letters)



>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET:
           DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11
           e.13.1.2
          Length = 503

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 19  KSMLEFENTTHISSEWEMVLQSSQPLWLGLRCL-------SSMIHLDLAVEHAMYVYDTG 71
             + + ++      E     Q    L+             +    L   + +        
Sbjct: 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCD 356

Query: 72  HVIIDNVQFMLGLSDSALDRFYMQDTIIQVL 102
            +I+D++  ++  S  + D   M D ++  L
Sbjct: 357 VIILDHISIVVSASGES-DERKMIDNLMTKL 386


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.021
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 31/99 (31%)

Query: 31  SSEWEMVLQSSQP-----LWLGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQ------ 79
           +  WE    S +       ++G+RC  +  +  L             ++ D+++      
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS----------ILEDSLENNEGVP 335

Query: 80  -FMLGLSDSALDRFYMQDTIIQVLLY-------FLSLPN 110
             ML +S+  L +  +QD + +   +        +SL N
Sbjct: 336 SPMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVN 372


>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
           system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
           1ka7_A
          Length = 128

 Score = 28.9 bits (65), Expect = 0.21
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 4   PWDELESKLKKPCPTKSMLE-FENTTHISSEWEMVLQS 40
           P   +   L+ P   KS     + TT I  + ++ L++
Sbjct: 90  PDQGIVIPLQYPVEKKSSARSTQGTTGIREDPDVCLKA 127


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.40
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 7/24 (29%)

Query: 7  ELESKLKK--P--CPT---KSMLE 23
          +L++ LK       P    K+ +E
Sbjct: 24 KLQASLKLYADDSAPALAIKATME 47


>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
           transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
           b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
          Length = 495

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 5   WDELESKLKKPCPTKSMLEFENTTHISSEWE 35
            D L + L  P P ++       +    +WE
Sbjct: 186 ADGLITTLHYPAPKRNKPTIYGVSPNYDKWE 216


>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
          cell membrane, cobalt transport, hydrolase, ION
          transport; 2.30A {Clostridium perfringens atcc 13124}
          Length = 275

 Score = 24.4 bits (54), Expect = 8.7
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 53 SMIHLDLAVEHAMYVYDTGHVIIDNVQF 80
          S+    L VE   Y Y  G   +  +  
Sbjct: 2  SLEDYILKVEELNYNYSDGTHALKGINM 29


>2pfz_A Putative exported protein; extracytoplasmic solute receptor,
           tripartite ATP independent periplasmic transport,
           pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
          Length = 301

 Score = 24.6 bits (54), Expect = 9.0
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 62  EHAMYVYDTGHVIIDNVQFM 81
           E+    YDT   +  N   +
Sbjct: 193 EYIKKFYDTEAWLPKNAVLV 212


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,617,708
Number of extensions: 79545
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 10
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)