RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16186
         (111 letters)



>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
           gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 237

 Score = 25.6 bits (55), Expect = 1.3
 Identities = 5/58 (8%), Positives = 16/58 (27%)

Query: 54  MIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQVLLYFLSLPNN 111
           +       +H   +     + +D+V  +L  S +     ++      +          
Sbjct: 147 ITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEAR 204


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.0 bits (51), Expect = 5.7
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 38  LQSSQPL--WLGLRCLSSMIHLDLAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQ 95
           L S  P    L L C++++   ++A   A  +     V  D +  +   +   L R Y  
Sbjct: 112 LASRNPTFMGLALHCIANVGSREMAEAFAGEIPKI-LVAGDTMDSVKQSAALCLLRLYRT 170

Query: 96  DTIIQVLLYFLS 107
              +  +  + S
Sbjct: 171 SPDLVPMGDWTS 182


>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS
           coronavirus [TaxId: 227859]}
          Length = 155

 Score = 23.2 bits (50), Expect = 7.3
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 72  HVIIDN--VQFMLGLSDSALDRFYMQ 95
            V ID   + FML   D  ++ FY +
Sbjct: 129 KVTIDYAEISFMLWCKDGHVETFYPK 154


>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 106

 Score = 22.7 bits (48), Expect = 8.8
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 6   DELESKLKKPCPT 18
           D L  +L   CPT
Sbjct: 94  DGLCHRLTTVCPT 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,434
Number of extensions: 15367
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)