Query psy16188
Match_columns 395
No_of_seqs 202 out of 1304
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 23:00:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 18.4 1.1E+02 0.0036 28.3 4.4 50 94-143 107-156 (283)
2 1x93_A Hypothetical protein HP 17.3 18 0.00062 25.1 -0.9 30 10-39 6-37 (55)
3 2k1o_A Putative; repressor, tr 10.8 32 0.0011 24.7 -1.2 34 6-39 16-51 (66)
4 3j1z_P YIIP, cation efflux fam 6.7 3.4E+02 0.012 25.2 3.7 29 116-144 138-166 (306)
5 3cx5_C Cytochrome B-C1 complex 6.2 5.8E+02 0.02 25.0 5.1 51 61-117 231-288 (385)
6 2bn5_A PSI; nuclear protein, s 6.1 1.5E+02 0.005 18.8 0.5 13 175-187 3-15 (33)
7 1pp9_C Cytochrome B; cytochrom 5.3 7E+02 0.024 24.3 5.1 51 61-117 230-287 (379)
8 2jvw_A Uncharacterized protein 5.0 1.5E+02 0.0052 22.9 0.0 22 368-392 26-47 (88)
9 3fbi_A Mediator of RNA polymer 4.0 2.4E+02 0.0084 21.6 0.5 20 7-26 19-38 (84)
10 1bh9_B TAFII28; histone fold, 3.9 2.9E+02 0.0098 21.3 0.9 48 12-67 1-48 (89)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=18.39 E-value=1.1e+02 Score=28.26 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHhcCCCCcchhhhhhccchHHHHH
Q psy16188 94 PKWLFSLVGICVFLAYTLDGIDGKQARRTGNSGPVGELFDHGLDSWTAMF 143 (395)
Q Consensus 94 p~w~~~~~~i~l~~y~~~D~~DGkqARrtg~sSplG~lfDhg~D~~~~~~ 143 (395)
+.|....+.+.+.+-..+=-.-.+.+||+++..-.++..|+-.|.++...
T Consensus 107 ~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~ 156 (283)
T 3h90_A 107 PGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGA 156 (283)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33434444444433333333345678888888888999999999887753
No 2
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=17.25 E-value=18 Score=25.12 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=23.3
Q ss_pred cccCHhhhhhhhccccccCCC--Cccchhhhc
Q psy16188 10 KYLDKHHLNGFDNYKYSSVDT--NPIGIYVMH 39 (395)
Q Consensus 10 ~~l~~~~l~~l~~ykY~~~d~--s~l~~~v~~ 39 (395)
-|+|+|+-+.|++-.+.-.++ |++-|||++
T Consensus 6 ~Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 37 (55)
T 1x93_A 6 LYFSDEQYQKLEKMANEEEESVGSYIKRYILK 37 (55)
T ss_dssp EEECHHHHHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999988877665 666666654
No 3
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=10.85 E-value=32 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=25.5
Q ss_pred cccCcccCHhhhhhhhccccccCCC--Cccchhhhc
Q psy16188 6 LFNYKYLDKHHLNGFDNYKYSSVDT--NPIGIYVMH 39 (395)
Q Consensus 6 ~~~~~~l~~~~l~~l~~ykY~~~d~--s~l~~~v~~ 39 (395)
..-.-|+|+||-+.|++-.+.-++. |++-|||++
T Consensus 16 ~~Vs~Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 51 (66)
T 2k1o_A 16 FSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILK 51 (66)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred eEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344689999999999988887765 666666654
No 4
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=6.74 E-value=3.4e+02 Score=25.18 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCcchhhhhhccchHHHHHH
Q psy16188 116 GKQARRTGNSGPVGELFDHGLDSWTAMFV 144 (395)
Q Consensus 116 GkqARrtg~sSplG~lfDhg~D~~~~~~~ 144 (395)
-+.+|++++..-.++..|+-.|.+.....
T Consensus 138 ~~~~~~~~s~~l~a~~~h~~~D~l~s~~v 166 (306)
T 3j1z_P 138 KRALAATNSTVVEADSLHYKSDLFLNAAV 166 (306)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHTTCCTTC
T ss_pred HHhccccCCHHHHHHHHhhcchhhhhhHH
Confidence 34566777766788999999998877543
No 5
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=6.21 E-value=5.8e+02 Score=24.96 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHccccccccCC----CCCCCC---CchhHHHHHHHHHHHHHHhhhhhHH
Q psy16188 61 VGFLFTVLSFVWLSFYDYHYYASSLT----HPNYPP---VPKWLFSLVGICVFLAYTLDGIDGK 117 (395)
Q Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~p~w~~~~~~i~l~~y~~~D~~DGk 117 (395)
.|++..+.....+..+.|+.-+..+. |+...+ .|+|- + ++.|..++++..|
T Consensus 231 ~g~~~~l~~l~~l~~~~P~~l~dp~nf~pAnPl~TP~hI~PeWY-F-----Lf~YaiLRsiPnK 288 (385)
T 3cx5_C 231 VTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWY-L-----LPFYAILRSIPDK 288 (385)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTSCGGGGSBCCTTCCCTTCCCCGG-G-----HHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHhCccccCChhhcCcCCcccCCCCCCCccH-H-----HHHHHHHHhcccc
Confidence 45554444444555666754332110 222222 68993 3 4568888877643
No 6
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=6.10 E-value=1.5e+02 Score=18.79 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=9.9
Q ss_pred HHHHHhhHhhcce
Q psy16188 175 FYASHWEKYNTGV 187 (395)
Q Consensus 175 fy~~~We~y~tg~ 187 (395)
-|.++|-||+...
T Consensus 3 DYSaQW~eYYrsi 15 (33)
T 2bn5_A 3 DYSAQWAEYYRSV 15 (33)
T ss_dssp TTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHc
Confidence 3678999998764
No 7
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=5.30 E-value=7e+02 Score=24.28 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHccccccccC----CCCCCCC---CchhHHHHHHHHHHHHHHhhhhhHH
Q psy16188 61 VGFLFTVLSFVWLSFYDYHYYASSL----THPNYPP---VPKWLFSLVGICVFLAYTLDGIDGK 117 (395)
Q Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~p~w~~~~~~i~l~~y~~~D~~DGk 117 (395)
.|++..+.....+..+.|+.-+..+ -|+...+ .|+| |+ ++.|..+.++..|
T Consensus 230 ~g~~~~l~~l~~l~~~~P~~l~dp~nf~pAnPl~TP~hI~PeW-YF-----Lf~YaiLRsiPnK 287 (379)
T 1pp9_C 230 LGALLLILALMLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEW-YF-----LFAYAILRSIPNK 287 (379)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTSCGGGGSBCCTTCCCTTCCCCG-GG-----HHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHhCCccccccccccccCcccCCCCCCCCc-ch-----hHHHHHHhcCchh
Confidence 3444444444444556665433211 0222222 6899 33 4568888887655
No 8
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=5.00 E-value=1.5e+02 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhcCceEEEecCC
Q psy16188 368 IHYGSCVVRQMCKHFKIRVFKIKHN 392 (395)
Q Consensus 368 ~hy~~~Vi~qi~~~L~I~~FsI~~~ 392 (395)
-||+.. ++.+.++|+||.-.|.
T Consensus 26 ~~YGW~---~L~~~i~I~CF~~~PS 47 (88)
T 2jvw_A 26 EHYGWE---ELSYMVNINCFKKDPS 47 (88)
T ss_dssp HHTCHH---HHHHHTTSSSTTSSCC
T ss_pred HHhCHH---HHHhhcccccCCCCCc
Confidence 356654 5788999999987653
No 9
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=4.03 E-value=2.4e+02 Score=21.58 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred ccCcccCHhhhhhhhccccc
Q psy16188 7 FNYKYLDKHHLNGFDNYKYS 26 (395)
Q Consensus 7 ~~~~~l~~~~l~~l~~ykY~ 26 (395)
...++.|++.+++|+++|-.
T Consensus 19 Pf~K~FT~eNl~kl~e~k~~ 38 (84)
T 3fbi_A 19 PYVKFFTQSNLEKLPKYKEK 38 (84)
T ss_dssp GGGGGCCHHHHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHH
Confidence 35688999999999999843
No 10
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=3.88 E-value=2.9e+02 Score=21.28 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=30.1
Q ss_pred cCHhhhhhhhccccccCCCCccchhhhchhHHHHHhhcccccCchHHHHHHHHHHH
Q psy16188 12 LDKHHLNGFDNYKYSSVDTNPIGIYVMHPFWNKLVEYFPRWLAPNLITFVGFLFTV 67 (395)
Q Consensus 12 l~~~~l~~l~~ykY~~~d~s~l~~~v~~p~w~~~~~~~P~~vaPN~iTl~g~~~~~ 67 (395)
+|++|+++-+.|+=++-.++-+ +.+.+.+. -..+.+|++..+|.+.=+
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~v-----Krl~~~~~---~~~v~~~v~i~v~glaKv 48 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAI-----KRLIQSIT---GTSVSQNVVIAMSGISKV 48 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHH-----HHHHHHHH---SSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHc---CCCCCccHHHHHHHHHHH
Confidence 4788888888887665444433 33444433 456789988876665433
Done!