Query psy16188
Match_columns 395
No_of_seqs 202 out of 1304
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 23:00:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16188.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16188hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90d_ f.32.1.1 (D:) Subunit 6.3 2.9E+02 0.021 21.4 4.8 20 93-118 73-92 (156)
2 d1msza_ d.68.7.1 (A:) SmuBP-2 5.4 2.2E+02 0.016 18.4 3.0 22 374-395 33-54 (62)
3 d1x93a1 a.43.1.3 (A:31-73) Unc 4.7 49 0.0036 19.9 -0.9 29 10-38 6-36 (43)
4 d1qf6a1 c.51.1.1 (A:533-642) T 4.4 79 0.0057 22.8 -0.1 12 49-60 1-12 (110)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 4.2 5.6E+02 0.041 17.4 5.1 21 262-282 59-79 (91)
6 d1sbxa_ a.6.1.4 (A:) Ski oncog 4.2 49 0.0036 24.8 -1.5 24 370-393 48-71 (106)
7 d2jq4a1 a.28.1.1 (A:1-83) Hypo 4.1 3.2E+02 0.023 18.1 3.2 25 131-155 28-52 (83)
8 d1bh9b_ a.22.1.3 (B:) TAF(II)2 4.1 1.9E+02 0.013 20.6 1.8 50 12-69 1-50 (89)
9 d1v54m_ f.23.7.1 (M:) Mitochon 3.9 3.8E+02 0.028 16.3 3.0 18 167-184 24-41 (43)
10 d1mo6a2 d.48.1.1 (A:270-329) R 3.8 97 0.0071 20.5 -0.1 7 129-135 4-10 (60)
No 1
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.25 E-value=2.9e+02 Score=21.41 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhHHH
Q psy16188 93 VPKWLFSLVGICVFLAYTLDGIDGKQ 118 (395)
Q Consensus 93 ~p~w~~~~~~i~l~~y~~~D~~DGkq 118 (395)
.|.| |+ ++.|+.+=++|.|.
T Consensus 73 ~PEW-YF-----L~~yaiLR~iP~kl 92 (156)
T d1q90d_ 73 LPEW-YF-----YPVFQILRVVPNKL 92 (156)
T ss_dssp CCCG-GG-----HHHHHHHHHCSCHH
T ss_pred Ccch-hh-----HHHHHHHHhCChHH
Confidence 6899 43 35788888888663
No 2
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=2.2e+02 Score=18.45 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=15.9
Q ss_pred HHHHHHhhcCceEEEecCCcCC
Q psy16188 374 VVRQMCKHFKIRVFKIKHNYVR 395 (395)
Q Consensus 374 Vi~qi~~~L~I~~FsI~~~~~~ 395 (395)
+|+++|+.+|+.--|..+.++|
T Consensus 33 ~vH~lA~~~gl~s~S~G~~~~R 54 (62)
T d1msza_ 33 RVHQIAEEHGLRHDSSGEGKRR 54 (62)
T ss_dssp HHHHHHHHTTEEEEEECSSSCC
T ss_pred HHHHHHHHcCCeEEEEcCCCCc
Confidence 5778888888888777655444
No 3
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=4.66 E-value=49 Score=19.90 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=17.2
Q ss_pred cccCHhhhhhhhccccccCC--CCccchhhh
Q psy16188 10 KYLDKHHLNGFDNYKYSSVD--TNPIGIYVM 38 (395)
Q Consensus 10 ~~l~~~~l~~l~~ykY~~~d--~s~l~~~v~ 38 (395)
-|.+++|.+.|++-...... .|.+.+|++
T Consensus 6 lyfsdeqyqklekmaneeeesvgsyikryil 36 (43)
T d1x93a1 6 LYFSDEQYQKLEKMANEEEESVGSYIKRYIL 36 (43)
T ss_dssp EEECHHHHHHHHHHHHHTTSCTTHHHHHHHH
T ss_pred eEecHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 47788888888765543222 244555554
No 4
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.37 E-value=79 Score=22.83 Aligned_cols=12 Identities=50% Similarity=1.190 Sum_probs=7.3
Q ss_pred cccccCchHHHH
Q psy16188 49 FPRWLAPNLITF 60 (395)
Q Consensus 49 ~P~~vaPN~iTl 60 (395)
+|.|+||.++-+
T Consensus 1 ~P~~laP~Qv~i 12 (110)
T d1qf6a1 1 FPTWLAPVQVVI 12 (110)
T ss_dssp CCTTTCSSCEEE
T ss_pred CCCCcCCceEEE
Confidence 466777766443
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.22 E-value=5.6e+02 Score=17.38 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=15.3
Q ss_pred CChHHhhhhhhHHHHHHHHHH
Q psy16188 262 RPLLEAMRPLYPLVAFVALSY 282 (395)
Q Consensus 262 ~s~~~~l~~l~p~~~~~~~~~ 282 (395)
+...|..--.+|.+++.+++.
T Consensus 59 n~~lEi~WtiIP~iil~~iav 79 (91)
T d1fftb2 59 SNKVEAVVWTVPILIIIFLAV 79 (91)
T ss_dssp CSHHHHHTTHHHHHHHHHHHH
T ss_pred CceehhhHHHHHHHHHHHHHH
Confidence 446888888899877666543
No 6
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=49 Score=24.75 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhcCceEEEecCCc
Q psy16188 370 YGSCVVRQMCKHFKIRVFKIKHNY 393 (395)
Q Consensus 370 y~~~Vi~qi~~~L~I~~FsI~~~~ 393 (395)
+...-|+.-++.|+|+|-.-++.+
T Consensus 48 ~s~~~I~~~~~~L~I~~~~Ct~eQ 71 (106)
T d1sbxa_ 48 FSLQQINAVCDELHIYCSRCTADQ 71 (106)
T ss_dssp SCHHHHHHHHHHTTCCCEECCHHH
T ss_pred CCHHHHHHHHHHhCceeccCCHHH
Confidence 467789999999999998766543
No 7
>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.15 E-value=3.2e+02 Score=18.07 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=19.5
Q ss_pred hhhhccchHHHHHHHHHHHHHHcCC
Q psy16188 131 LFDHGLDSWTAMFVPALLYSIFGRS 155 (395)
Q Consensus 131 lfDhg~D~~~~~~~~~~~~~~~~~~ 155 (395)
++|-|.||+...=+...+-.-+|..
T Consensus 28 f~dlG~DSl~~~~l~~~le~~f~v~ 52 (83)
T d2jq4a1 28 LYAAGLSSFASVQLMLGIEEAFDIE 52 (83)
T ss_dssp GGGGTCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHCCC
Confidence 7899999999887777666666653
No 8
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.06 E-value=1.9e+02 Score=20.61 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=32.6
Q ss_pred cCHhhhhhhhccccccCCCCccchhhhchhHHHHHhhcccccCchHHHHHHHHHHHHH
Q psy16188 12 LDKHHLNGFDNYKYSSVDTNPIGIYVMHPFWNKLVEYFPRWLAPNLITFVGFLFTVLS 69 (395)
Q Consensus 12 l~~~~l~~l~~ykY~~~d~s~l~~~v~~p~w~~~~~~~P~~vaPN~iTl~g~~~~~~~ 69 (395)
.|++|+++.+.|+=++-.++- .+.+.+.+. -..++||+++.++.+.=+..
T Consensus 1 Fs~eQ~~RyE~fRRs~~~K~~-----vkrl~~~~~---g~sv~~~v~i~v~giaKvFv 50 (89)
T d1bh9b_ 1 FSEEQLNRYEMYRRSAFPKAA-----IKRLIQSIT---GTSVSQNVVIAMSGISKVFV 50 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHH-----HHHHHHHHH---SSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHH-----HHHHHHHHc---CCCCChhHHHHHHHHHHHHH
Confidence 478899888888876644443 344444433 45789999888776665443
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.90 E-value=3.8e+02 Score=16.30 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhHhh
Q psy16188 167 ICWNVFISFYASHWEKYN 184 (395)
Q Consensus 167 ~~~~~~~~fy~~~We~y~ 184 (395)
..+..-.+..++|.|.|.
T Consensus 24 ~~~L~PaGwVLshLe~YK 41 (43)
T d1v54m_ 24 LSFLLPAGWVLYHLDNYK 41 (43)
T ss_dssp HHHHHHHHHHHHTHHHHH
T ss_pred HHHHccHHHHHHHHHHhc
Confidence 334445678899999985
No 10
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.77 E-value=97 Score=20.51 Aligned_cols=7 Identities=57% Similarity=1.037 Sum_probs=2.8
Q ss_pred hhhhhhc
Q psy16188 129 GELFDHG 135 (395)
Q Consensus 129 G~lfDhg 135 (395)
||++|-+
T Consensus 4 gellDla 10 (60)
T d1mo6a2 4 GSLIDMG 10 (60)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3444433
Done!