RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16188
         (395 letters)



>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938
           {Enterococcus faecium [TaxId: 1352]}
          Length = 88

 Score = 25.9 bits (57), Expect = 3.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 299 AVFITTGTIFSNICCRLIVAQMSNTRCDAFNWLLVAQAVDIVLSSFFVGMPRAELCL 355
           A  +  G + S IC RL+V  +        N    A+ V+ VL++  +G+P A + L
Sbjct: 24  ARLVEAGDLAS-ICRRLMV--IGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPL 77


>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
           isozyme IV [TaxId: 10090]}
          Length = 258

 Score = 27.1 bits (59), Expect = 3.6
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 39  HPFWNKLVEYFPR-WLAPNLITFVGFLFTVLSFVWLSFYDYHYYASSLTHPNYPPVPKWL 97
           +  +  LVE  P      +  T        +       Y Y  Y  SLT PN      W 
Sbjct: 149 NKGFQPLVEALPSISKPHSTSTVRESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWT 208


>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           isozyme IV [TaxId: 9606]}
          Length = 262

 Score = 27.1 bits (59), Expect = 3.7
 Identities = 13/60 (21%), Positives = 16/60 (26%), Gaps = 1/60 (1%)

Query: 39  HPFWNKLVEYFPRWLAPNL-ITFVGFLFTVLSFVWLSFYDYHYYASSLTHPNYPPVPKWL 97
           +  +  LVE       P +  T        L         Y  Y  SLT P       W 
Sbjct: 155 NEGFQPLVEALSNIPKPEMSTTMAESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWT 214


>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 132

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 38  MHPFWNKLVEYFPRWLAPNLIT---FVGFLFTVLSFVWLSFYDYHYYASSLTHPNYPPVP 94
                   ++ F   L+ N       VG   +   +  L     H   +      +P + 
Sbjct: 41  YVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLS 100

Query: 95  KWL 97
            ++
Sbjct: 101 AYV 103


>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
           isozyme XIV [TaxId: 10090]}
          Length = 259

 Score = 25.5 bits (55), Expect = 10.0
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 39  HPFWNKLVEYFPRWLAPNLITFVGFLFTVLSFVWLSFYDYHYYASSLTHPNYPPVPKWL 97
           +P ++ ++         +  T V   F+V          +  Y  SLT P       W 
Sbjct: 152 NPAYDHILSRLHEIRYKDQKTSVP-PFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWT 209


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,667,785
Number of extensions: 81073
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 17
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)