BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16189
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 200 REYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKC 246
R L CP C K+ + TK C H FC DC+ T + ++CP C
Sbjct: 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 96
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 205 TLTCPSCKVKRKDAVL-------TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257
T++CP C + V T+C HVFC CLR + CP C YH
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 68
Query: 258 LYL 260
+Y+
Sbjct: 69 IYI 71
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR-----KCPKCNAAF 250
KE +TCP C K+ V C H FC C+ YE+ + CP C +
Sbjct: 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 199 IREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCN 247
+ E + C CK DA +T+C H FC C+ R+ +CPKCN
Sbjct: 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCI-VRHFYYSNRCPKCN 57
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 142 AQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIRE 201
A+ EA Q+ ++ + + K E ++ L +KK+EQ
Sbjct: 32 AEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQ-------------- 77
Query: 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253
+ C C+ V T+CFH C DCL+ ++ + CP C G N
Sbjct: 78 ---SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 200 REYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKC 246
R L CP C K+ + TK C H FC DC+ T + ++CP C
Sbjct: 48 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 95
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 37.0 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 206 LTCPSCKVKRKDAVL-------TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258
++CP C + V T+C HVFC CLR + CP C YH +
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62
Query: 259 YL 260
Y+
Sbjct: 63 YI 64
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 200 REYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKC 246
R L CP C K+ + TK C H FC DC+ T + ++CP C
Sbjct: 29 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 76
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 35.0 bits (79), Expect = 0.046, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 196 MEEIREY--------KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCP 244
MEEI+ Y + CP C + ++AV T C H FC C+ KCP
Sbjct: 8 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 64
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 33.9 bits (76), Expect = 0.097, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCP 244
CP C + ++AV T C H FC C+ KCP
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 45
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 205 TLTCPSCKVKRKDAV-------LTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257
T++CP C + V T+C HVFC CLR + CP C YH
Sbjct: 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHP 65
Query: 258 LYLES 262
+Y+ S
Sbjct: 66 IYIGS 70
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 205 TLTCPSCKVKRKDAV-------LTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257
T++CP C + V T+C HVFC CLR + CP C YH
Sbjct: 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHP 130
Query: 258 LYL 260
+Y+
Sbjct: 131 IYI 133
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 196 MEEIREYKETLT--------CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCP 244
MEEI+ Y CP C + ++AV T C H FC C+ KCP
Sbjct: 1 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 188 AGTLDEV----MMEEIREYKETLTCPSCKVKRKDAVLTKCFH-VFCWDCLRTRYETRQRK 242
+GT ++V + E++R +E TC C K V C H V C DC + RK
Sbjct: 3 SGTTEDVSDLPVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPS-----LRK 57
Query: 243 CPKCNA 248
CP C +
Sbjct: 58 CPICRS 63
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.0 bits (71), Expect = 0.33, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL + E+ + CP C
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.0 bits (71), Expect = 0.35, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL + E+ + CP C
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 199 IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKC 246
I ++ L CP C K+ V TKC H+FC C+ ++ +CP C
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.6 bits (70), Expect = 0.45, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL E+ + CP C
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 31.6 bits (70), Expect = 0.46, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 205 TLTCPSCKVKRKDAVL-------TKCFHVFCWDCLRTRYETRQRKCPKC 246
T++CP C + V T+C HVFC CLR + CP C
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTC 62
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 196 MEEIREYKETLT--------CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCP 244
MEEI+ Y CP C + ++AV T C H FC C+ KCP
Sbjct: 1 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 207 TCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKC 246
+C C K+ V+ +C H FC C+ +E +R CP C
Sbjct: 17 SCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 31.2 bits (69), Expect = 0.68, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 199 IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKCNAAFGAN 253
+ + +E + CP C + V C H FC C+ ET KCP C + N
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL + E+ + CP C
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 30.8 bits (68), Expect = 0.74, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 199 IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 246
+ + +E + CP C + V C H FC C+ ET KCP C
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL + E+ + CP C
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL + E+ + CP C
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL + E+ + CP C
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 30.4 bits (67), Expect = 0.92, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
L C C+ + K L C H C CL E +CP C A +
Sbjct: 7 LRCQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPICQAPW 47
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C+ ++ V+TKC H FC C + R P+C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHF----RATPRC 52
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCL-----RTRYETRQRKCPKCNAAF 250
KE +TCP C + C H FC CL ++ + + CP C ++
Sbjct: 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C C KD + C H+ C CL E+ + CP C
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 197 EEIREYKETLTCPSCKVKRKDAVLTKCFH-VFCWDCLRTRYETRQRKCPKC 246
E++R +E TC C K V C H V C +C + RKCP C
Sbjct: 287 EQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPIC 332
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 208 CPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
CP C + ++ C H FC+ C+ TR+ + CP C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCI-TRWIRQNPTCPLC 46
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 151 VTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKETLTCPS 210
+T + SSL E +L E+ +K +G+ ++ + ++ +ET C
Sbjct: 7 LTAQQSSLIREDKSNAKLWNEV------LASLKDRPASGSPFQLFLSKV---EETFQCIC 57
Query: 211 CKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251
C+ + T C H C DCL + + CP C G
Sbjct: 58 CQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 198 EIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
+I E L C C DA + +C H FC C+ RY + CP C+
Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCI-VRYLETSKYCPICDV 58
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 198 EIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
+I E L C C DA + +C H FC C+ RY + CP C+
Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCI-VRYLETSKYCPICDV 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255
L C C +AV C H FC C+ + R+ +CP C + Y
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCI-NEWMKRKIECPICRKDIKSKTY 102
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 198 EIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
+I E L C C DA + +C H FC C+ RY + CP C+
Sbjct: 4 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCI-VRYLETSKYCPICDV 54
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255
L C C +AV C H FC C+ + R+ +CP C + Y
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCI-NEWMKRKIECPICRKDIKSKTY 102
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 81 IDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAM-DLN-KRKAIESAQS 129
+DA I K +E E+Y+ LT++ + + + QA+ D+N KR ++S +
Sbjct: 89 VDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTT 139
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255
L C C +AV C H FC C+ + R+ +CP C + Y
Sbjct: 65 LQCIICSEYFIEAVTLNCAHSFCSYCI-NEWMKRKIECPICRKDIKSKTY 113
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 220 LTKCFHVFCWDCLRTRYETRQRKCPKCN 247
+ C HVFC+DC + + CP C+
Sbjct: 17 MIPCKHVFCYDCAILHEKKGDKMCPGCS 44
>pdb|3K1H|A Chain A, Crystal Structure Of Hp1076 From H.Pylori
Length = 158
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 50 MTERI-KSNQLHKLAREEKDILHEQVNALK-LQI---------------DAMHTAIRKLE 92
MT I KS Q+ K +R+ K+I +E V AL+ LQI DA+ +I K E
Sbjct: 7 MTNAIEKSQQIAKFSRDMKNI-NESVGALQVLQIACKKLFNKSMGLEDKDALQASIIKQE 65
Query: 93 EKE-----RYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147
+E ++L + L + + + + ++ + ++ ++ + + +LE+ ++KE
Sbjct: 66 LREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLENVGEFQAYLEEKLNEIKEL 125
Query: 148 QQVVTEKTSSLEA 160
++E S+ +A
Sbjct: 126 LGYLSESLSNPKA 138
>pdb|3JSV|C Chain C, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3JSV|D Chain D, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
Length = 94
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 22 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81
G ED+++Q LQQ E A +L+ + + + HK+ E +L Q + K
Sbjct: 1 GMQLEDLRQQ----LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56
Query: 82 DAMHTAIRKLEEKERYLQTVLTNVEKELH 110
A A KL EK+ YLQ L +++E +
Sbjct: 57 QAERHAREKLVEKKEYLQEQLEQLQREFN 85
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 192 DEVMMEEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQR-KCPKCNAA 249
DE +E I E C C K +DA L C + C+ C+R R+ T QR +CP C A
Sbjct: 12 DEQSVESI---AEVFRCFICXEKLRDARLCPHCSKLCCFSCIR-RWLTEQRAQCPHCRAP 67
Query: 250 F 250
Sbjct: 68 L 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,384,356
Number of Sequences: 62578
Number of extensions: 222050
Number of successful extensions: 1209
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 152
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)