Query psy16189
Match_columns 262
No_of_seqs 230 out of 1802
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:00:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978|consensus 100.0 9.5E-48 2.1E-52 357.4 27.8 257 4-260 442-698 (698)
2 PF08647 BRE1: BRE1 E3 ubiquit 99.6 1.6E-14 3.4E-19 105.3 12.6 96 14-109 1-96 (96)
3 PLN03208 E3 ubiquitin-protein 99.5 3.8E-14 8.2E-19 114.2 3.9 58 203-260 16-88 (193)
4 KOG0320|consensus 99.4 4.1E-14 9E-19 111.1 2.6 55 205-260 131-187 (187)
5 PF15227 zf-C3HC4_4: zinc fing 99.4 2.8E-13 6E-18 83.4 3.4 39 208-246 1-42 (42)
6 KOG0823|consensus 99.4 3E-13 6.5E-18 110.9 3.0 56 204-259 46-103 (230)
7 smart00504 Ubox Modified RING 99.3 1.3E-12 2.7E-17 88.0 3.8 53 206-259 2-54 (63)
8 KOG0317|consensus 99.3 8E-13 1.7E-17 111.5 3.2 56 202-258 236-291 (293)
9 PF13923 zf-C3HC4_2: Zinc fing 99.3 2.3E-12 5E-17 78.2 3.0 38 208-246 1-39 (39)
10 PF13920 zf-C3HC4_3: Zinc fing 99.3 4.3E-12 9.2E-17 81.4 3.6 45 206-251 3-48 (50)
11 TIGR00599 rad18 DNA repair pro 99.2 3E-12 6.5E-17 114.8 3.2 60 199-259 20-79 (397)
12 KOG0287|consensus 99.2 2.8E-12 6E-17 110.0 0.6 58 202-260 20-77 (442)
13 PF00097 zf-C3HC4: Zinc finger 99.2 2.4E-11 5.2E-16 74.5 3.2 39 208-246 1-41 (41)
14 PF14835 zf-RING_6: zf-RING of 99.2 9.3E-12 2E-16 81.7 1.2 53 201-256 3-56 (65)
15 PF04564 U-box: U-box domain; 99.1 3.2E-11 6.9E-16 83.6 3.4 55 205-259 4-58 (73)
16 COG5432 RAD18 RING-finger-cont 99.1 1.3E-11 2.9E-16 103.8 1.7 54 202-256 22-75 (391)
17 KOG2164|consensus 99.1 2.1E-11 4.5E-16 110.3 2.7 57 205-261 186-246 (513)
18 PHA02929 N1R/p28-like protein; 99.1 3.6E-11 7.9E-16 101.0 3.5 49 203-252 172-228 (238)
19 PF13639 zf-RING_2: Ring finge 99.1 2.6E-11 5.7E-16 75.5 1.7 40 207-247 2-44 (44)
20 PHA02926 zinc finger-like prot 99.1 6.2E-11 1.3E-15 96.7 3.9 58 202-259 167-238 (242)
21 PF13445 zf-RING_UBOX: RING-ty 99.1 4.4E-11 9.6E-16 73.5 1.9 36 208-244 1-43 (43)
22 cd00162 RING RING-finger (Real 99.1 1.3E-10 2.7E-15 72.2 3.3 44 207-250 1-45 (45)
23 PF14634 zf-RING_5: zinc-RING 99.0 1.3E-10 2.7E-15 72.4 2.9 41 207-248 1-44 (44)
24 KOG0978|consensus 99.0 9.2E-08 2E-12 90.8 21.6 175 9-183 433-607 (698)
25 smart00184 RING Ring finger. E 99.0 2.8E-10 6E-15 68.2 3.0 39 208-246 1-39 (39)
26 COG1579 Zn-ribbon protein, pos 99.0 1.9E-06 4.1E-11 72.5 26.2 127 27-153 14-142 (239)
27 TIGR00570 cdk7 CDK-activating 99.0 4.6E-10 1E-14 97.0 4.2 56 205-260 3-63 (309)
28 COG5574 PEX10 RING-finger-cont 98.9 5.4E-10 1.2E-14 93.4 2.2 51 205-255 215-266 (271)
29 KOG2177|consensus 98.7 6.7E-09 1.4E-13 90.7 2.0 47 201-248 9-55 (386)
30 KOG4172|consensus 98.7 2.2E-09 4.8E-14 67.6 -1.1 52 206-259 8-60 (62)
31 KOG0824|consensus 98.5 2.7E-08 5.8E-13 84.7 1.8 48 206-253 8-55 (324)
32 PF12678 zf-rbx1: RING-H2 zinc 98.5 7.2E-08 1.6E-12 66.7 3.2 41 206-247 20-73 (73)
33 COG5152 Uncharacterized conser 98.5 3.4E-08 7.3E-13 79.1 1.2 45 205-250 196-240 (259)
34 PRK02224 chromosome segregatio 98.5 9.9E-05 2.1E-09 74.3 25.5 15 241-255 452-466 (880)
35 KOG0311|consensus 98.5 2.2E-08 4.7E-13 87.0 -0.9 59 195-253 33-92 (381)
36 PRK02224 chromosome segregatio 98.5 0.00011 2.4E-09 73.8 25.4 15 204-218 450-464 (880)
37 KOG2879|consensus 98.4 1.5E-07 3.3E-12 79.1 3.5 47 205-251 239-287 (298)
38 KOG4628|consensus 98.4 1.4E-07 3E-12 83.1 2.5 46 206-251 230-278 (348)
39 COG5243 HRD1 HRD ubiquitin lig 98.4 2E-07 4.4E-12 81.4 2.7 47 203-250 285-344 (491)
40 PF14447 Prok-RING_4: Prokaryo 98.4 1.7E-07 3.7E-12 59.7 1.5 48 205-255 7-54 (55)
41 COG5540 RING-finger-containing 98.3 2.5E-07 5.3E-12 78.9 2.7 49 204-252 322-373 (374)
42 KOG0802|consensus 98.3 2.1E-07 4.5E-12 88.4 2.1 49 204-253 290-343 (543)
43 KOG4265|consensus 98.3 3.6E-07 7.8E-12 79.9 2.2 55 203-260 288-343 (349)
44 KOG1813|consensus 98.2 3E-07 6.6E-12 78.1 1.0 46 205-251 241-286 (313)
45 PF11789 zf-Nse: Zinc-finger o 98.2 1.2E-06 2.6E-11 57.4 2.4 43 204-246 10-54 (57)
46 TIGR02168 SMC_prok_B chromosom 98.1 0.004 8.6E-08 64.3 29.0 20 12-31 673-692 (1179)
47 TIGR02168 SMC_prok_B chromosom 98.1 0.0033 7.2E-08 64.9 28.4 35 10-44 678-712 (1179)
48 KOG1785|consensus 98.1 9E-07 2E-11 78.1 1.6 48 207-254 371-419 (563)
49 PF04641 Rtf2: Rtf2 RING-finge 98.1 2.6E-06 5.7E-11 73.4 3.9 58 202-261 110-171 (260)
50 KOG4159|consensus 98.1 1.5E-06 3.3E-11 78.5 2.1 49 203-252 82-130 (398)
51 KOG4275|consensus 98.0 5.9E-07 1.3E-11 76.2 -1.3 48 205-259 300-348 (350)
52 PRK03918 chromosome segregatio 98.0 0.01 2.2E-07 59.9 28.6 12 242-253 437-448 (880)
53 KOG2660|consensus 98.0 1.9E-06 4.1E-11 74.6 1.4 53 200-253 10-63 (331)
54 KOG2817|consensus 98.0 4.5E-06 9.7E-11 74.0 3.0 59 202-260 331-394 (394)
55 PF14662 CCDC155: Coiled-coil 97.9 0.0069 1.5E-07 49.1 24.7 127 13-139 5-141 (193)
56 PF07888 CALCOCO1: Calcium bin 97.9 0.023 5E-07 53.4 27.5 93 15-107 142-241 (546)
57 KOG4185|consensus 97.9 7.2E-06 1.6E-10 72.1 2.4 52 205-256 3-62 (296)
58 PRK11637 AmiB activator; Provi 97.9 0.023 4.9E-07 52.7 28.1 82 7-88 45-126 (428)
59 PF07888 CALCOCO1: Calcium bin 97.9 0.026 5.6E-07 53.1 27.3 88 7-94 148-235 (546)
60 KOG0297|consensus 97.9 6.5E-06 1.4E-10 75.0 2.0 52 202-254 18-70 (391)
61 COG1579 Zn-ribbon protein, pos 97.8 0.0051 1.1E-07 51.9 19.0 109 4-112 33-143 (239)
62 PF12861 zf-Apc11: Anaphase-pr 97.8 1.4E-05 3.1E-10 56.1 3.0 48 205-252 21-83 (85)
63 COG5222 Uncharacterized conser 97.8 7.8E-06 1.7E-10 69.7 1.9 43 206-248 275-318 (427)
64 PRK03918 chromosome segregatio 97.7 0.068 1.5E-06 53.9 29.1 9 207-215 437-445 (880)
65 KOG1571|consensus 97.7 1.1E-05 2.3E-10 70.9 1.1 50 204-259 304-353 (355)
66 PF00261 Tropomyosin: Tropomyo 97.7 0.023 4.9E-07 48.4 25.4 95 14-108 69-163 (237)
67 KOG0161|consensus 97.7 0.034 7.3E-07 59.5 26.5 55 130-184 1085-1139(1930)
68 KOG3039|consensus 97.7 2.6E-05 5.7E-10 64.8 3.2 54 204-258 220-277 (303)
69 KOG0161|consensus 97.7 0.053 1.1E-06 58.1 27.0 13 164-176 1126-1138(1930)
70 KOG1039|consensus 97.7 2.3E-05 5E-10 69.5 2.3 55 205-259 161-229 (344)
71 KOG1002|consensus 97.7 1.8E-05 3.9E-10 72.3 1.5 52 203-254 534-589 (791)
72 KOG0825|consensus 97.6 9E-06 1.9E-10 77.3 -0.6 53 206-259 124-179 (1134)
73 KOG0828|consensus 97.6 2.3E-05 5.1E-10 71.0 2.0 49 204-252 570-635 (636)
74 COG5220 TFB3 Cdk activating ki 97.6 1.6E-05 3.4E-10 65.8 0.8 49 205-253 10-66 (314)
75 KOG1645|consensus 97.6 1.5E-05 3.1E-10 70.8 0.5 55 205-259 4-64 (463)
76 KOG0250|consensus 97.6 0.067 1.5E-06 53.7 25.5 80 101-180 373-453 (1074)
77 KOG0250|consensus 97.6 0.097 2.1E-06 52.6 28.4 148 37-184 316-464 (1074)
78 KOG0827|consensus 97.6 2.9E-05 6.3E-10 68.5 1.8 51 206-256 5-61 (465)
79 KOG0826|consensus 97.6 2.3E-05 4.9E-10 67.8 1.0 56 205-261 300-356 (357)
80 PF05701 WEMBL: Weak chloropla 97.6 0.079 1.7E-06 50.4 25.4 140 45-184 282-428 (522)
81 KOG0804|consensus 97.5 2.7E-05 5.9E-10 69.9 1.2 45 204-251 174-222 (493)
82 KOG0999|consensus 97.5 0.046 9.9E-07 51.0 21.2 75 8-82 56-131 (772)
83 PF00261 Tropomyosin: Tropomyo 97.5 0.049 1.1E-06 46.3 22.9 80 12-91 18-97 (237)
84 KOG0971|consensus 97.5 0.099 2.2E-06 51.5 24.0 171 10-181 347-550 (1243)
85 KOG4674|consensus 97.5 0.11 2.5E-06 55.0 26.1 87 4-90 684-770 (1822)
86 PRK09039 hypothetical protein; 97.5 0.063 1.4E-06 48.2 21.8 68 98-165 114-181 (343)
87 PRK09039 hypothetical protein; 97.4 0.079 1.7E-06 47.6 22.0 22 15-36 45-66 (343)
88 PF10174 Cast: RIM-binding pro 97.4 0.14 3.1E-06 50.6 26.2 50 4-53 296-345 (775)
89 KOG4367|consensus 97.4 9.5E-05 2.1E-09 66.3 3.0 36 203-238 2-37 (699)
90 PF14570 zf-RING_4: RING/Ubox 97.4 0.00012 2.7E-09 45.7 2.6 43 208-250 1-47 (48)
91 PF12718 Tropomyosin_1: Tropom 97.4 0.043 9.3E-07 42.9 19.1 117 66-182 8-134 (143)
92 PF12718 Tropomyosin_1: Tropom 97.4 0.044 9.4E-07 42.9 20.7 129 13-152 4-132 (143)
93 PHA02562 46 endonuclease subun 97.4 0.15 3.2E-06 48.8 24.5 15 42-56 253-267 (562)
94 KOG4692|consensus 97.3 0.00011 2.3E-09 64.3 2.0 46 205-251 422-467 (489)
95 KOG3002|consensus 97.3 0.00012 2.6E-09 64.0 2.1 43 204-251 47-91 (299)
96 TIGR00606 rad50 rad50. This fa 97.3 0.32 6.9E-06 51.4 27.2 76 12-91 832-907 (1311)
97 PRK11637 AmiB activator; Provi 97.2 0.17 3.6E-06 46.9 27.6 82 12-93 43-124 (428)
98 PRK01156 chromosome segregatio 97.2 0.3 6.6E-06 49.5 28.1 6 208-213 455-460 (895)
99 KOG3800|consensus 97.2 0.00022 4.7E-09 60.9 2.6 35 222-256 22-56 (300)
100 KOG0995|consensus 97.2 0.2 4.4E-06 47.0 23.7 25 16-40 228-252 (581)
101 PF10174 Cast: RIM-binding pro 97.2 0.28 6E-06 48.6 24.8 31 21-51 229-259 (775)
102 PF14662 CCDC155: Coiled-coil 97.2 0.096 2.1E-06 42.5 26.2 50 33-82 4-53 (193)
103 KOG1029|consensus 97.1 0.17 3.6E-06 49.2 21.1 18 14-31 391-408 (1118)
104 PF05290 Baculo_IE-1: Baculovi 97.1 0.0033 7.1E-08 47.7 7.8 50 204-253 79-134 (140)
105 PF15619 Lebercilin: Ciliary p 97.1 0.12 2.7E-06 42.5 20.1 92 60-151 21-112 (194)
106 KOG4674|consensus 97.1 0.51 1.1E-05 50.4 25.6 176 8-183 1098-1298(1822)
107 TIGR00606 rad50 rad50. This fa 97.1 0.56 1.2E-05 49.6 27.4 81 5-85 832-915 (1311)
108 KOG0996|consensus 97.1 0.34 7.4E-06 49.2 23.2 96 18-114 867-963 (1293)
109 KOG0996|consensus 97.0 0.46 9.9E-06 48.3 24.4 53 133-185 540-592 (1293)
110 COG1340 Uncharacterized archae 97.0 0.19 4.1E-06 43.7 25.7 106 11-116 36-154 (294)
111 PF09726 Macoilin: Transmembra 97.0 0.24 5.1E-06 48.7 21.5 95 12-113 421-515 (697)
112 KOG2114|consensus 97.0 0.001 2.2E-08 64.4 5.3 41 206-250 841-882 (933)
113 COG5194 APC11 Component of SCF 97.0 0.00064 1.4E-08 46.6 2.8 32 222-254 53-84 (88)
114 KOG0933|consensus 97.0 0.46 1E-05 47.5 25.1 102 9-113 734-835 (1174)
115 KOG1001|consensus 97.0 0.00025 5.4E-09 68.7 1.1 48 206-254 455-503 (674)
116 KOG0933|consensus 97.0 0.51 1.1E-05 47.3 25.3 34 7-40 692-725 (1174)
117 KOG0971|consensus 96.9 0.49 1.1E-05 46.9 25.4 50 7-56 246-295 (1243)
118 PF15070 GOLGA2L5: Putative go 96.9 0.44 9.5E-06 46.1 26.4 175 10-184 23-216 (617)
119 PRK01156 chromosome segregatio 96.9 0.65 1.4E-05 47.1 27.8 10 242-251 454-463 (895)
120 KOG4643|consensus 96.8 0.64 1.4E-05 46.6 25.2 44 21-64 413-456 (1195)
121 COG5109 Uncharacterized conser 96.8 0.00073 1.6E-08 58.3 2.3 60 201-260 332-396 (396)
122 PRK04778 septation ring format 96.8 0.53 1.2E-05 45.3 22.8 106 8-113 288-403 (569)
123 PF08317 Spc7: Spc7 kinetochor 96.8 0.36 7.9E-06 43.0 19.4 54 125-178 213-266 (325)
124 PF04849 HAP1_N: HAP1 N-termin 96.8 0.34 7.3E-06 42.5 22.3 123 60-182 162-288 (306)
125 COG0419 SbcC ATPase involved i 96.8 0.79 1.7E-05 46.7 28.6 9 205-213 457-465 (908)
126 KOG0977|consensus 96.8 0.53 1.1E-05 44.5 22.9 34 53-86 94-127 (546)
127 KOG1100|consensus 96.7 0.0011 2.4E-08 55.1 2.4 42 206-252 159-201 (207)
128 KOG1493|consensus 96.6 0.00089 1.9E-08 45.6 1.3 31 222-252 50-82 (84)
129 smart00744 RINGv The RING-vari 96.6 0.0019 4.1E-08 40.8 2.7 41 207-247 1-49 (49)
130 PRK04778 septation ring format 96.6 0.71 1.5E-05 44.4 23.0 20 74-93 319-338 (569)
131 KOG2034|consensus 96.6 0.0034 7.3E-08 61.3 5.6 46 192-237 804-851 (911)
132 PF13870 DUF4201: Domain of un 96.6 0.29 6.3E-06 39.6 19.3 123 16-138 6-129 (177)
133 PF05701 WEMBL: Weak chloropla 96.6 0.71 1.5E-05 44.0 23.6 117 37-153 288-418 (522)
134 KOG1814|consensus 96.5 0.0012 2.7E-08 59.0 1.8 45 204-248 183-237 (445)
135 PF00038 Filament: Intermediat 96.5 0.54 1.2E-05 41.4 28.7 26 129-154 224-249 (312)
136 PRK04863 mukB cell division pr 96.5 1.6 3.5E-05 46.6 25.8 98 15-112 292-395 (1486)
137 COG0419 SbcC ATPase involved i 96.4 1.3 2.9E-05 45.1 30.0 14 240-253 457-470 (908)
138 KOG4673|consensus 96.4 0.98 2.1E-05 43.5 25.1 80 13-92 420-501 (961)
139 KOG1734|consensus 96.4 0.001 2.2E-08 56.2 0.6 47 205-251 224-281 (328)
140 COG4372 Uncharacterized protei 96.4 0.69 1.5E-05 41.6 27.0 48 137-184 233-280 (499)
141 PF02891 zf-MIZ: MIZ/SP-RING z 96.3 0.0023 4.9E-08 40.7 1.8 44 206-249 3-50 (50)
142 PF11793 FANCL_C: FANCL C-term 96.3 0.00096 2.1E-08 45.6 -0.1 47 206-252 3-67 (70)
143 PF06160 EzrA: Septation ring 96.3 1.1 2.4E-05 43.0 20.6 52 9-60 285-336 (560)
144 PF10367 Vps39_2: Vacuolar sor 96.3 0.0089 1.9E-07 44.0 5.1 31 203-233 76-108 (109)
145 COG5219 Uncharacterized conser 96.3 0.0018 3.9E-08 63.4 1.5 51 201-251 1465-1523(1525)
146 PF08614 ATG16: Autophagy prot 96.3 0.15 3.2E-06 42.0 12.7 37 17-53 11-47 (194)
147 COG5175 MOT2 Transcriptional r 96.2 0.0024 5.2E-08 55.7 2.0 55 206-260 15-73 (480)
148 KOG4809|consensus 96.2 1.1 2.3E-05 42.1 20.2 168 9-179 236-410 (654)
149 KOG0977|consensus 96.2 1.2 2.7E-05 42.1 22.9 78 8-85 112-189 (546)
150 PF09726 Macoilin: Transmembra 96.2 1.5 3.3E-05 43.1 25.6 59 8-66 424-496 (697)
151 KOG1941|consensus 96.1 0.0018 3.9E-08 57.5 0.7 44 205-248 365-413 (518)
152 PF10146 zf-C4H2: Zinc finger- 96.1 0.71 1.5E-05 39.1 19.6 28 227-255 196-223 (230)
153 PF12128 DUF3584: Protein of u 96.1 2.3 4.9E-05 44.8 27.7 73 10-82 601-673 (1201)
154 KOG3161|consensus 96.1 0.0019 4.2E-08 60.7 0.8 38 204-244 10-51 (861)
155 PRK04863 mukB cell division pr 96.1 2.6 5.6E-05 45.1 28.1 50 62-111 359-408 (1486)
156 PF04849 HAP1_N: HAP1 N-termin 96.0 0.94 2E-05 39.7 18.7 26 151-176 278-303 (306)
157 KOG0980|consensus 96.0 1.8 4E-05 42.9 27.3 30 11-40 335-364 (980)
158 PF10168 Nup88: Nuclear pore c 96.0 1.9 4.1E-05 42.7 20.9 43 66-108 580-622 (717)
159 PF00038 Filament: Intermediat 95.9 1.1 2.4E-05 39.4 27.4 85 117-204 219-304 (312)
160 PF09730 BicD: Microtubule-ass 95.9 2 4.3E-05 42.3 23.6 134 42-182 46-182 (717)
161 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.58 1.3E-05 36.0 19.6 78 10-94 4-81 (132)
162 KOG3113|consensus 95.9 0.0079 1.7E-07 50.5 3.2 54 203-259 109-166 (293)
163 PF13851 GAS: Growth-arrest sp 95.8 0.9 1.9E-05 37.6 23.4 114 19-136 5-129 (201)
164 KOG4643|consensus 95.8 2.5 5.5E-05 42.6 25.3 60 25-84 403-462 (1195)
165 PF10272 Tmpp129: Putative tra 95.7 0.006 1.3E-07 54.6 1.9 35 224-258 312-358 (358)
166 PF13870 DUF4201: Domain of un 95.6 0.93 2E-05 36.6 22.2 91 24-114 43-133 (177)
167 KOG0980|consensus 95.6 2.7 5.8E-05 41.8 24.7 50 68-117 413-462 (980)
168 KOG2930|consensus 95.6 0.0069 1.5E-07 43.8 1.7 29 222-251 80-108 (114)
169 PF09730 BicD: Microtubule-ass 95.6 2.6 5.6E-05 41.5 24.7 113 66-182 35-147 (717)
170 KOG0999|consensus 95.6 2.1 4.6E-05 40.3 23.0 104 7-117 6-124 (772)
171 PF15070 GOLGA2L5: Putative go 95.6 2.5 5.5E-05 41.0 24.0 51 41-91 12-62 (617)
172 KOG3970|consensus 95.5 0.014 3.1E-07 48.2 3.5 54 197-250 42-104 (299)
173 KOG0964|consensus 95.5 3.1 6.8E-05 41.9 24.3 62 11-72 232-293 (1200)
174 COG4942 Membrane-bound metallo 95.5 2 4.3E-05 39.4 27.4 71 11-81 40-110 (420)
175 COG5236 Uncharacterized conser 95.4 0.009 2E-07 52.4 2.2 46 205-250 61-107 (493)
176 KOG4362|consensus 95.4 0.0044 9.4E-08 59.4 -0.0 51 201-251 17-69 (684)
177 KOG4185|consensus 95.3 0.1 2.2E-06 45.8 8.4 45 205-249 207-265 (296)
178 PF06160 EzrA: Septation ring 95.3 2.8 6.1E-05 40.3 18.7 118 64-181 305-432 (560)
179 smart00787 Spc7 Spc7 kinetocho 95.2 2.1 4.5E-05 38.0 20.3 114 67-180 146-263 (312)
180 KOG4360|consensus 95.2 1.2 2.6E-05 41.4 15.0 110 3-112 192-301 (596)
181 PF10481 CENP-F_N: Cenp-F N-te 95.2 1.8 3.9E-05 37.1 17.1 33 153-185 99-131 (307)
182 PF10473 CENP-F_leu_zip: Leuci 95.1 1.2 2.5E-05 34.7 20.4 59 55-113 21-79 (140)
183 PF08317 Spc7: Spc7 kinetochor 95.0 2.5 5.5E-05 37.6 25.4 116 67-185 151-266 (325)
184 PHA03096 p28-like protein; Pro 94.9 0.014 3.1E-07 50.8 1.7 43 206-248 179-231 (284)
185 PF15294 Leu_zip: Leucine zipp 94.8 2.4 5.2E-05 36.7 15.9 94 21-114 65-174 (278)
186 KOG1029|consensus 94.8 4.5 9.8E-05 39.8 23.1 120 41-160 455-588 (1118)
187 COG4026 Uncharacterized protei 94.8 0.69 1.5E-05 38.5 11.2 77 109-185 130-206 (290)
188 PF03854 zf-P11: P-11 zinc fin 94.7 0.017 3.6E-07 35.7 1.3 44 206-252 3-47 (50)
189 KOG2932|consensus 94.7 0.015 3.2E-07 50.4 1.4 42 206-250 91-133 (389)
190 KOG3579|consensus 94.7 0.012 2.5E-07 50.3 0.8 34 205-238 268-305 (352)
191 PF15619 Lebercilin: Ciliary p 94.6 2.2 4.7E-05 35.2 25.2 101 5-112 8-108 (194)
192 PF08614 ATG16: Autophagy prot 94.6 1.3 2.7E-05 36.5 12.5 27 155-181 157-183 (194)
193 PF02318 FYVE_2: FYVE-type zin 94.6 0.053 1.2E-06 40.9 4.0 44 205-248 54-102 (118)
194 PF10473 CENP-F_leu_zip: Leuci 94.5 1.7 3.7E-05 33.7 18.0 43 66-108 74-116 (140)
195 PF06906 DUF1272: Protein of u 94.5 0.036 7.7E-07 35.5 2.4 46 206-254 6-55 (57)
196 COG3813 Uncharacterized protei 94.5 0.041 8.8E-07 37.1 2.8 49 206-257 6-58 (84)
197 KOG0994|consensus 94.2 7.8 0.00017 40.0 23.3 38 28-65 1516-1553(1758)
198 KOG4739|consensus 94.1 0.019 4.2E-07 48.1 0.8 32 204-235 2-35 (233)
199 KOG4360|consensus 94.0 5.3 0.00012 37.4 18.8 104 57-160 197-300 (596)
200 KOG0946|consensus 94.0 7.1 0.00015 38.7 21.6 11 16-26 653-663 (970)
201 KOG3899|consensus 93.9 0.021 4.6E-07 49.0 0.8 38 223-260 325-374 (381)
202 PF04111 APG6: Autophagy prote 93.9 3 6.5E-05 37.0 14.3 23 163-185 113-135 (314)
203 PF14992 TMCO5: TMCO5 family 93.9 3.9 8.5E-05 35.5 17.0 156 25-184 13-181 (280)
204 PF12128 DUF3584: Protein of u 93.8 10 0.00023 40.0 26.3 40 20-59 618-657 (1201)
205 PF10498 IFT57: Intra-flagella 93.8 5 0.00011 36.3 17.1 112 67-178 229-350 (359)
206 KOG0995|consensus 93.8 6.3 0.00014 37.4 21.6 109 52-160 253-371 (581)
207 PF05483 SCP-1: Synaptonemal c 93.8 7.1 0.00015 37.9 24.1 59 24-82 493-551 (786)
208 PF05667 DUF812: Protein of un 93.7 7.1 0.00015 37.8 25.6 36 147-182 496-531 (594)
209 KOG0298|consensus 93.7 0.035 7.6E-07 56.5 1.9 51 199-250 1147-1198(1394)
210 PF06785 UPF0242: Uncharacteri 93.7 4.8 0.0001 35.6 17.7 68 14-81 90-157 (401)
211 KOG3799|consensus 93.6 0.34 7.4E-06 36.9 6.6 23 205-232 65-88 (169)
212 KOG0964|consensus 93.6 9.2 0.0002 38.7 23.8 46 34-79 325-370 (1200)
213 KOG1853|consensus 93.6 4.1 9E-05 34.6 20.7 127 49-179 50-180 (333)
214 PF05883 Baculo_RING: Baculovi 93.4 0.04 8.7E-07 42.1 1.5 32 205-236 26-66 (134)
215 KOG0243|consensus 93.4 10 0.00022 38.7 21.3 26 11-36 406-431 (1041)
216 PF07975 C1_4: TFIIH C1-like d 93.4 0.082 1.8E-06 33.5 2.6 39 208-247 2-50 (51)
217 KOG3039|consensus 93.2 0.057 1.2E-06 45.4 2.1 36 201-236 39-74 (303)
218 PF04156 IncA: IncA protein; 93.2 3.9 8.5E-05 33.2 17.6 31 52-82 82-112 (191)
219 PF15066 CAGE1: Cancer-associa 93.1 7.2 0.00016 36.1 16.0 162 18-184 296-467 (527)
220 PF10481 CENP-F_N: Cenp-F N-te 93.1 5.3 0.00011 34.4 18.7 27 150-176 163-189 (307)
221 PF05010 TACC: Transforming ac 93.1 4.5 9.8E-05 33.6 26.5 67 16-82 23-93 (207)
222 PF12329 TMF_DNA_bd: TATA elem 93.1 1.7 3.7E-05 29.9 9.0 25 35-59 3-27 (74)
223 KOG4445|consensus 93.1 0.11 2.5E-06 44.8 3.7 48 205-252 115-187 (368)
224 PF07191 zinc-ribbons_6: zinc- 93.0 0.011 2.4E-07 39.9 -2.0 40 206-251 2-41 (70)
225 PF05483 SCP-1: Synaptonemal c 92.9 9.7 0.00021 37.0 26.3 105 78-182 526-648 (786)
226 PF05667 DUF812: Protein of un 92.9 9.5 0.00021 37.0 26.2 60 17-76 322-381 (594)
227 PF00769 ERM: Ezrin/radixin/mo 92.8 5.5 0.00012 34.0 18.3 46 63-108 10-55 (246)
228 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.8 3.4 7.5E-05 31.7 19.6 8 140-147 110-117 (132)
229 PF01576 Myosin_tail_1: Myosin 92.8 0.031 6.7E-07 56.2 0.0 19 64-82 151-169 (859)
230 COG5185 HEC1 Protein involved 92.8 8.2 0.00018 35.9 19.2 73 83-159 334-406 (622)
231 PF14569 zf-UDP: Zinc-binding 92.7 0.13 2.8E-06 35.4 2.9 47 205-251 9-62 (80)
232 COG4372 Uncharacterized protei 92.7 7.6 0.00016 35.2 26.1 49 130-178 233-281 (499)
233 PF09986 DUF2225: Uncharacteri 92.6 0.044 9.6E-07 45.9 0.6 55 203-258 3-66 (214)
234 KOG1812|consensus 92.5 0.065 1.4E-06 48.9 1.7 48 205-252 146-204 (384)
235 KOG0993|consensus 92.4 8.5 0.00018 35.1 22.0 34 207-240 470-509 (542)
236 PF07800 DUF1644: Protein of u 92.3 0.15 3.3E-06 40.1 3.2 19 205-223 2-20 (162)
237 COG4477 EzrA Negative regulato 92.3 10 0.00022 35.8 21.2 115 3-117 317-434 (570)
238 KOG3842|consensus 92.2 0.1 2.2E-06 45.4 2.4 46 205-251 341-414 (429)
239 KOG0963|consensus 92.2 11 0.00025 36.1 20.9 58 18-75 205-266 (629)
240 COG2433 Uncharacterized conser 92.1 6.9 0.00015 37.5 14.3 29 155-183 480-508 (652)
241 PF11932 DUF3450: Protein of u 92.0 7.2 0.00016 33.3 17.7 71 87-157 43-113 (251)
242 PF15254 CCDC14: Coiled-coil d 92.0 14 0.0003 36.5 21.2 98 74-171 450-551 (861)
243 PF05911 DUF869: Plant protein 91.9 15 0.00032 36.7 21.8 21 140-160 671-691 (769)
244 KOG0249|consensus 91.9 14 0.00029 36.3 16.1 40 164-203 217-257 (916)
245 TIGR01843 type_I_hlyD type I s 91.9 9.8 0.00021 34.7 24.5 34 74-107 146-179 (423)
246 PF15254 CCDC14: Coiled-coil d 91.8 14 0.00031 36.4 19.6 47 67-113 429-475 (861)
247 TIGR02680 conserved hypothetic 91.8 21 0.00045 38.3 25.8 95 17-112 221-323 (1353)
248 cd00065 FYVE FYVE domain; Zinc 91.8 0.049 1.1E-06 35.2 -0.0 32 206-237 3-38 (57)
249 PF04216 FdhE: Protein involve 91.7 0.038 8.2E-07 48.5 -0.8 43 206-249 173-220 (290)
250 KOG0804|consensus 91.6 11 0.00024 34.8 17.8 15 63-77 373-387 (493)
251 PF09304 Cortex-I_coil: Cortex 91.6 4.2 9E-05 29.9 14.6 32 130-161 46-77 (107)
252 PF08746 zf-RING-like: RING-li 91.6 0.24 5.3E-06 30.2 3.0 39 208-246 1-43 (43)
253 PRK04023 DNA polymerase II lar 91.6 0.12 2.6E-06 51.7 2.4 49 205-256 626-679 (1121)
254 PF09755 DUF2046: Uncharacteri 91.6 9.1 0.0002 33.7 22.9 14 98-111 82-95 (310)
255 PF11559 ADIP: Afadin- and alp 91.6 5.5 0.00012 31.2 17.6 57 44-103 34-90 (151)
256 KOG1940|consensus 91.5 0.068 1.5E-06 46.1 0.6 42 206-248 159-204 (276)
257 PF01576 Myosin_tail_1: Myosin 91.5 0.055 1.2E-06 54.5 0.0 65 92-156 320-384 (859)
258 TIGR01562 FdhE formate dehydro 91.4 0.05 1.1E-06 47.9 -0.4 44 205-249 184-233 (305)
259 PF10498 IFT57: Intra-flagella 91.4 11 0.00023 34.2 18.7 52 130-181 268-319 (359)
260 KOG0994|consensus 91.4 20 0.00043 37.2 25.1 9 171-179 1732-1740(1758)
261 KOG0827|consensus 91.3 0.47 1E-05 42.6 5.5 47 206-253 197-247 (465)
262 PF13248 zf-ribbon_3: zinc-rib 91.2 0.047 1E-06 29.5 -0.5 23 227-250 4-26 (26)
263 KOG1815|consensus 91.1 0.17 3.8E-06 47.1 2.9 53 203-255 68-130 (444)
264 PF10234 Cluap1: Clusterin-ass 91.1 9.5 0.00021 33.0 14.8 59 93-151 162-220 (267)
265 PF13240 zinc_ribbon_2: zinc-r 91.1 0.047 1E-06 28.6 -0.5 22 228-250 2-23 (23)
266 PF09728 Taxilin: Myosin-like 91.0 11 0.00023 33.5 23.0 61 35-95 27-87 (309)
267 PF04710 Pellino: Pellino; In 90.9 0.068 1.5E-06 48.0 0.0 56 205-260 328-411 (416)
268 KOG1899|consensus 90.8 16 0.00036 35.2 16.0 83 59-141 112-194 (861)
269 COG4647 AcxC Acetone carboxyla 90.7 0.13 2.8E-06 38.9 1.2 22 209-230 61-82 (165)
270 TIGR01005 eps_transp_fam exopo 90.5 20 0.00043 35.8 21.3 28 37-64 237-264 (754)
271 COG4942 Membrane-bound metallo 90.3 15 0.00032 33.9 26.8 69 6-74 42-110 (420)
272 PF05557 MAD: Mitotic checkpoi 90.3 0.32 6.9E-06 48.2 4.0 20 63-82 404-423 (722)
273 PF10571 UPF0547: Uncharacteri 90.2 0.14 3E-06 27.7 0.8 12 240-251 14-25 (26)
274 PF10186 Atg14: UV radiation r 90.1 12 0.00025 32.5 20.1 11 206-216 174-184 (302)
275 KOG2462|consensus 90.1 0.1 2.2E-06 44.7 0.4 51 203-253 159-228 (279)
276 KOG0612|consensus 90.0 27 0.00058 36.4 25.2 45 38-82 495-539 (1317)
277 TIGR03007 pepcterm_ChnLen poly 90.0 17 0.00037 34.2 22.7 19 60-78 213-231 (498)
278 KOG0288|consensus 90.0 15 0.00033 33.5 16.8 68 34-101 3-70 (459)
279 PF12329 TMF_DNA_bd: TATA elem 89.9 4.8 0.0001 27.6 9.9 28 126-153 31-58 (74)
280 PF13863 DUF4200: Domain of un 89.9 6.9 0.00015 29.4 15.1 84 18-101 27-110 (126)
281 PF09728 Taxilin: Myosin-like 89.7 14 0.0003 32.8 25.6 20 87-106 203-222 (309)
282 KOG1962|consensus 89.7 10 0.00022 31.7 11.8 15 168-182 191-205 (216)
283 PF14915 CCDC144C: CCDC144C pr 89.7 13 0.00029 32.5 26.1 13 66-78 85-97 (305)
284 KOG4673|consensus 89.2 23 0.0005 34.6 24.2 36 77-112 521-556 (961)
285 TIGR03007 pepcterm_ChnLen poly 89.2 20 0.00043 33.8 20.1 10 31-40 169-178 (498)
286 PF01363 FYVE: FYVE zinc finge 89.2 0.025 5.4E-07 38.3 -3.3 33 205-237 9-45 (69)
287 PRK10246 exonuclease subunit S 89.1 31 0.00068 35.9 28.0 15 200-214 498-512 (1047)
288 KOG0018|consensus 88.9 30 0.00065 35.5 24.3 70 41-111 280-349 (1141)
289 KOG3564|consensus 88.9 6.5 0.00014 36.6 10.8 82 15-96 27-108 (604)
290 PF06156 DUF972: Protein of un 88.9 4.9 0.00011 29.7 8.5 51 97-147 5-55 (107)
291 PF12660 zf-TFIIIC: Putative z 88.8 0.041 9E-07 40.2 -2.5 47 206-252 15-67 (99)
292 PF14353 CpXC: CpXC protein 88.8 0.44 9.6E-06 36.3 3.1 47 206-252 2-50 (128)
293 smart00787 Spc7 Spc7 kinetocho 88.8 17 0.00036 32.3 25.7 12 172-183 273-284 (312)
294 PHA02825 LAP/PHD finger-like p 88.8 0.44 9.5E-06 37.6 3.0 48 204-252 7-60 (162)
295 PF14319 Zn_Tnp_IS91: Transpos 88.7 0.19 4.2E-06 37.5 0.9 10 239-248 59-68 (111)
296 PRK03564 formate dehydrogenase 88.4 0.16 3.4E-06 44.8 0.3 43 205-248 187-234 (309)
297 KOG0982|consensus 88.1 21 0.00046 32.8 23.2 173 10-184 205-388 (502)
298 KOG2979|consensus 88.0 16 0.00034 31.3 12.6 45 205-249 176-222 (262)
299 COG5185 HEC1 Protein involved 88.0 23 0.00049 33.1 23.0 31 81-111 311-341 (622)
300 KOG1428|consensus 87.9 0.34 7.4E-06 50.4 2.3 47 205-251 3486-3544(3738)
301 PF07058 Myosin_HC-like: Myosi 87.8 18 0.0004 31.7 17.3 46 164-209 116-162 (351)
302 KOG3268|consensus 87.7 0.34 7.4E-06 38.7 1.8 32 221-252 188-229 (234)
303 PF14197 Cep57_CLD_2: Centroso 87.5 6.9 0.00015 26.5 10.0 14 70-83 3-16 (69)
304 PF10235 Cript: Microtubule-as 87.4 0.31 6.7E-06 34.8 1.3 36 206-251 45-80 (90)
305 KOG1952|consensus 87.3 0.33 7E-06 47.7 1.7 46 205-250 191-246 (950)
306 PHA02862 5L protein; Provision 87.1 0.58 1.3E-05 36.3 2.6 46 206-252 3-54 (156)
307 PF05622 HOOK: HOOK protein; 86.8 0.26 5.7E-06 48.7 0.9 18 165-182 310-327 (713)
308 PRK13169 DNA replication intia 86.8 7.6 0.00016 28.9 8.4 51 97-147 5-55 (110)
309 PF07889 DUF1664: Protein of u 86.6 12 0.00027 28.5 13.4 13 98-110 66-78 (126)
310 cd00350 rubredoxin_like Rubred 86.5 0.49 1.1E-05 27.0 1.6 11 239-249 16-26 (33)
311 KOG0979|consensus 86.5 41 0.00089 34.4 25.2 27 57-83 247-273 (1072)
312 PF08581 Tup_N: Tup N-terminal 86.4 8.9 0.00019 26.7 8.7 68 6-83 8-75 (79)
313 TIGR02680 conserved hypothetic 86.4 51 0.0011 35.4 24.7 50 54-103 272-321 (1353)
314 PF12325 TMF_TATA_bd: TATA ele 86.4 12 0.00027 28.2 15.5 32 50-81 29-60 (120)
315 KOG1812|consensus 86.4 0.74 1.6E-05 42.1 3.5 41 203-244 304-349 (384)
316 PRK14714 DNA polymerase II lar 86.2 0.33 7.1E-06 49.9 1.2 50 205-254 667-723 (1337)
317 PF15290 Syntaphilin: Golgi-lo 86.1 22 0.00047 30.8 13.3 74 83-160 76-149 (305)
318 PF11559 ADIP: Afadin- and alp 86.0 15 0.00032 28.7 17.1 16 164-179 134-149 (151)
319 KOG1850|consensus 85.9 24 0.00052 31.2 27.1 47 19-65 105-151 (391)
320 KOG0612|consensus 85.9 48 0.001 34.6 24.6 9 102-110 541-549 (1317)
321 PF04102 SlyX: SlyX; InterPro 85.2 8.8 0.00019 25.9 7.5 41 102-142 6-46 (69)
322 KOG0976|consensus 85.0 44 0.00096 33.4 23.3 7 102-108 353-359 (1265)
323 COG3883 Uncharacterized protei 84.6 25 0.00055 30.3 26.9 55 10-64 39-93 (265)
324 KOG2113|consensus 84.4 0.66 1.4E-05 40.5 2.1 46 200-248 338-384 (394)
325 PF07111 HCR: Alpha helical co 84.4 43 0.00094 32.8 24.9 177 5-181 193-391 (739)
326 PF05605 zf-Di19: Drought indu 84.4 0.55 1.2E-05 30.0 1.2 41 205-252 2-43 (54)
327 PF15616 TerY-C: TerY-C metal 84.1 0.57 1.2E-05 35.9 1.4 44 202-252 74-117 (131)
328 PLN02939 transferase, transfer 84.1 54 0.0012 33.7 21.0 79 15-93 155-254 (977)
329 KOG0825|consensus 84.1 0.41 9E-06 46.7 0.7 47 205-251 96-154 (1134)
330 PF07503 zf-HYPF: HypF finger; 83.8 1.2 2.5E-05 26.0 2.3 26 227-252 1-33 (35)
331 KOG0243|consensus 83.7 57 0.0012 33.7 21.8 24 29-52 410-433 (1041)
332 PF14197 Cep57_CLD_2: Centroso 83.7 11 0.00024 25.5 9.3 61 21-81 3-63 (69)
333 PF06818 Fez1: Fez1; InterPro 83.6 24 0.00052 29.2 20.5 155 16-177 10-180 (202)
334 KOG0963|consensus 83.3 45 0.00099 32.2 23.2 21 158-178 244-264 (629)
335 COG2433 Uncharacterized conser 83.2 46 0.00099 32.2 19.5 28 149-176 481-508 (652)
336 KOG0979|consensus 83.2 58 0.0013 33.4 22.7 23 27-49 185-207 (1072)
337 COG0068 HypF Hydrogenase matur 83.2 0.57 1.2E-05 45.4 1.3 23 228-250 154-183 (750)
338 TIGR00622 ssl1 transcription f 83.1 0.66 1.4E-05 34.5 1.3 41 206-247 56-110 (112)
339 PF05557 MAD: Mitotic checkpoi 83.1 1.4 3E-05 43.7 4.0 69 11-79 359-427 (722)
340 PF12773 DZR: Double zinc ribb 82.7 1 2.3E-05 28.1 2.0 28 225-252 12-41 (50)
341 PF10046 BLOC1_2: Biogenesis o 82.5 16 0.00035 26.5 12.5 82 11-92 9-93 (99)
342 PF14205 Cys_rich_KTR: Cystein 82.5 0.43 9.4E-06 30.4 0.1 12 204-215 3-14 (55)
343 smart00064 FYVE Protein presen 82.4 0.75 1.6E-05 30.7 1.3 32 206-237 11-46 (68)
344 PF10083 DUF2321: Uncharacteri 82.3 0.83 1.8E-05 35.9 1.6 26 224-253 27-52 (158)
345 PF11932 DUF3450: Protein of u 82.2 31 0.00066 29.4 18.9 17 66-82 50-66 (251)
346 PLN02189 cellulose synthase 82.2 0.95 2.1E-05 45.9 2.4 46 206-251 35-87 (1040)
347 KOG2129|consensus 82.1 41 0.0009 30.9 20.6 65 97-161 205-286 (552)
348 PF09789 DUF2353: Uncharacteri 81.9 37 0.0008 30.2 23.4 85 101-185 134-225 (319)
349 PF12325 TMF_TATA_bd: TATA ele 81.8 20 0.00044 27.1 15.6 24 133-156 73-96 (120)
350 PF08826 DMPK_coil: DMPK coile 81.7 12 0.00027 24.6 7.8 28 119-146 30-57 (61)
351 PF06156 DUF972: Protein of un 81.7 19 0.0004 26.6 10.1 19 164-182 37-55 (107)
352 KOG4460|consensus 81.6 50 0.0011 31.5 18.4 96 57-152 573-679 (741)
353 PLN02436 cellulose synthase A 81.6 1 2.2E-05 45.8 2.4 46 206-251 37-89 (1094)
354 COG4357 Zinc finger domain con 81.5 0.49 1.1E-05 33.9 0.1 46 207-252 37-92 (105)
355 KOG1937|consensus 81.4 46 0.00099 30.9 24.2 73 10-83 242-318 (521)
356 KOG4593|consensus 81.2 58 0.0012 32.0 24.9 22 164-185 276-297 (716)
357 KOG2068|consensus 81.2 1.3 2.9E-05 39.0 2.7 47 206-253 250-300 (327)
358 KOG1962|consensus 81.2 31 0.00067 28.8 12.0 44 67-110 153-196 (216)
359 PF14915 CCDC144C: CCDC144C pr 81.2 37 0.00081 29.7 24.0 47 33-79 59-105 (305)
360 PF13166 AAA_13: AAA domain 81.1 60 0.0013 32.0 26.5 48 155-202 423-471 (712)
361 PF09304 Cortex-I_coil: Cortex 81.0 20 0.00042 26.4 16.0 16 70-85 14-29 (107)
362 PF15397 DUF4618: Domain of un 80.9 36 0.00077 29.3 26.0 31 18-48 8-38 (258)
363 PF09789 DUF2353: Uncharacteri 80.9 40 0.00087 30.0 25.2 31 225-255 247-277 (319)
364 TIGR02300 FYDLN_acid conserved 80.9 1.2 2.7E-05 33.7 2.1 11 205-215 9-19 (129)
365 PRK00846 hypothetical protein; 80.4 17 0.00036 25.2 8.9 16 98-113 11-26 (77)
366 PF13942 Lipoprotein_20: YfhG 80.3 29 0.00062 27.9 11.1 71 30-100 95-165 (179)
367 KOG0976|consensus 79.9 70 0.0015 32.1 24.5 15 95-109 272-286 (1265)
368 PRK14559 putative protein seri 79.8 1.1 2.3E-05 43.8 1.8 25 227-252 29-53 (645)
369 PF04423 Rad50_zn_hook: Rad50 79.8 0.58 1.3E-05 29.9 0.0 12 242-253 22-33 (54)
370 PF08882 Acetone_carb_G: Aceto 79.5 0.99 2.1E-05 33.3 1.2 15 243-257 77-91 (112)
371 PF04710 Pellino: Pellino; In 79.5 0.59 1.3E-05 42.2 0.0 32 219-250 305-338 (416)
372 KOG0396|consensus 79.1 1.1 2.5E-05 40.0 1.6 44 218-261 346-389 (389)
373 PF00769 ERM: Ezrin/radixin/mo 78.7 41 0.00089 28.7 17.5 90 21-110 10-99 (246)
374 PF03833 PolC_DP2: DNA polymer 78.1 0.69 1.5E-05 45.7 0.0 47 204-253 654-705 (900)
375 PRK00295 hypothetical protein; 77.9 18 0.0004 24.3 8.3 9 102-110 7-15 (68)
376 COG4477 EzrA Negative regulato 77.7 66 0.0014 30.6 22.5 15 16-30 229-243 (570)
377 PF02994 Transposase_22: L1 tr 77.7 9.5 0.00021 34.7 7.2 17 166-182 168-184 (370)
378 PRK10722 hypothetical protein; 77.6 17 0.00036 30.9 8.0 66 35-100 146-211 (247)
379 KOG4807|consensus 77.5 57 0.0012 29.8 21.1 185 12-207 294-491 (593)
380 KOG1003|consensus 77.4 39 0.00084 27.8 22.6 168 9-183 4-185 (205)
381 PRK06266 transcription initiat 77.3 2.8 6.1E-05 34.0 3.3 33 205-253 117-149 (178)
382 PLN02638 cellulose synthase A 77.2 1.8 3.9E-05 44.2 2.6 46 206-251 18-70 (1079)
383 PRK04406 hypothetical protein; 77.2 21 0.00045 24.6 8.8 10 101-110 12-21 (75)
384 smart00531 TFIIE Transcription 77.0 1.5 3.2E-05 34.4 1.6 16 239-254 122-137 (147)
385 KOG2807|consensus 76.8 1.4 3E-05 38.8 1.5 40 207-247 332-374 (378)
386 TIGR01000 bacteriocin_acc bact 76.8 65 0.0014 30.1 22.7 27 13-39 94-120 (457)
387 PF13719 zinc_ribbon_5: zinc-r 76.8 1.2 2.6E-05 26.2 0.7 13 206-218 3-15 (37)
388 PRK02119 hypothetical protein; 76.5 21 0.00046 24.3 8.4 9 102-110 11-19 (73)
389 PF10497 zf-4CXXC_R1: Zinc-fin 76.5 2.4 5.2E-05 31.3 2.5 25 224-248 37-69 (105)
390 KOG0309|consensus 76.5 1.5 3.3E-05 42.8 1.7 39 206-245 1029-1069(1081)
391 PF10205 KLRAQ: Predicted coil 76.1 28 0.00061 25.5 11.6 17 72-88 5-21 (102)
392 PLN02915 cellulose synthase A 76.0 2 4.3E-05 43.8 2.5 46 206-251 16-68 (1044)
393 KOG0018|consensus 75.9 1E+02 0.0022 31.9 21.8 16 192-207 487-502 (1141)
394 PF10212 TTKRSYEDQ: Predicted 75.8 74 0.0016 30.2 14.6 14 136-149 488-501 (518)
395 smart00290 ZnF_UBP Ubiquitin C 75.7 1.6 3.5E-05 27.1 1.3 24 207-230 1-24 (50)
396 TIGR01005 eps_transp_fam exopo 75.7 91 0.002 31.1 20.6 16 25-40 196-211 (754)
397 PF07106 TBPIP: Tat binding pr 75.3 39 0.00086 26.8 11.1 18 130-147 118-135 (169)
398 PF05766 NinG: Bacteriophage L 75.3 5.2 0.00011 32.7 4.3 48 204-253 86-136 (189)
399 PRK02793 phi X174 lysis protei 75.3 23 0.0005 24.1 8.4 10 101-110 9-18 (72)
400 PRK14890 putative Zn-ribbon RN 75.2 3.2 6.8E-05 27.1 2.5 40 206-248 8-56 (59)
401 KOG1356|consensus 75.2 0.87 1.9E-05 44.8 -0.2 46 205-250 229-281 (889)
402 KOG2264|consensus 75.2 42 0.00092 32.2 10.6 47 21-67 77-123 (907)
403 cd00729 rubredoxin_SM Rubredox 75.1 1.6 3.4E-05 25.2 0.9 10 240-249 18-27 (34)
404 PLN02195 cellulose synthase A 75.1 2.6 5.7E-05 42.6 3.0 46 206-251 7-59 (977)
405 PRK15422 septal ring assembly 75.1 25 0.00054 24.4 10.9 9 102-110 20-28 (79)
406 PRK00736 hypothetical protein; 75.0 22 0.00049 23.9 8.0 9 102-110 7-15 (68)
407 PF07106 TBPIP: Tat binding pr 75.0 31 0.00066 27.5 8.8 53 132-184 83-137 (169)
408 PF09889 DUF2116: Uncharacteri 74.9 1.7 3.7E-05 28.5 1.2 14 240-253 3-16 (59)
409 COG4306 Uncharacterized protei 74.6 1.7 3.8E-05 32.7 1.3 26 224-253 27-52 (160)
410 PRK13169 DNA replication intia 74.6 26 0.00057 26.0 7.6 23 59-81 30-52 (110)
411 TIGR02231 conserved hypothetic 74.4 78 0.0017 30.1 12.8 13 167-179 156-168 (525)
412 PF02403 Seryl_tRNA_N: Seryl-t 74.4 31 0.00066 25.1 9.8 31 52-82 30-60 (108)
413 KOG1729|consensus 74.4 0.66 1.4E-05 40.5 -1.1 45 206-250 169-224 (288)
414 PF09538 FYDLN_acid: Protein o 74.1 1.8 3.9E-05 32.1 1.3 15 239-253 25-39 (108)
415 PF05911 DUF869: Plant protein 74.0 1E+02 0.0022 31.0 24.9 80 103-182 606-685 (769)
416 COG1340 Uncharacterized archae 74.0 61 0.0013 28.4 28.3 32 9-40 41-72 (294)
417 PF06785 UPF0242: Uncharacteri 74.0 66 0.0014 28.8 19.8 72 67-138 101-172 (401)
418 PF04582 Reo_sigmaC: Reovirus 73.9 10 0.00022 33.7 6.1 46 8-53 27-72 (326)
419 PF09738 DUF2051: Double stran 73.7 64 0.0014 28.5 14.2 41 53-93 86-126 (302)
420 PRK05978 hypothetical protein; 73.5 2.5 5.5E-05 33.1 2.1 40 206-261 34-75 (148)
421 TIGR03185 DNA_S_dndD DNA sulfu 73.5 96 0.0021 30.4 18.8 23 60-82 393-415 (650)
422 COG1842 PspA Phage shock prote 73.5 55 0.0012 27.6 20.8 38 101-138 100-137 (225)
423 PF09538 FYDLN_acid: Protein o 73.4 1.6 3.4E-05 32.4 0.8 29 202-230 6-39 (108)
424 PF13717 zinc_ribbon_4: zinc-r 73.2 1.7 3.6E-05 25.4 0.8 12 206-217 3-14 (36)
425 KOG1842|consensus 73.1 3 6.5E-05 38.3 2.7 30 205-234 180-213 (505)
426 TIGR03545 conserved hypothetic 72.9 83 0.0018 30.4 12.4 68 16-83 164-237 (555)
427 PF09297 zf-NADH-PPase: NADH p 72.9 0.5 1.1E-05 26.7 -1.5 24 225-248 3-29 (32)
428 PLN02400 cellulose synthase 72.8 2.1 4.5E-05 43.8 1.8 46 206-251 37-89 (1085)
429 PF14446 Prok-RING_1: Prokaryo 72.8 4.8 0.0001 25.8 2.8 41 206-251 6-52 (54)
430 PRK12495 hypothetical protein; 72.7 12 0.00026 31.2 5.9 12 205-216 42-53 (226)
431 KOG2041|consensus 72.7 1.9 4.2E-05 42.0 1.5 26 228-253 1162-1187(1189)
432 PRK00420 hypothetical protein; 72.5 0.87 1.9E-05 34.0 -0.7 29 206-252 24-52 (112)
433 PF07851 TMPIT: TMPIT-like pro 71.8 75 0.0016 28.5 12.1 51 64-114 3-53 (330)
434 PF07754 DUF1610: Domain of un 71.7 0.83 1.8E-05 24.2 -0.7 8 240-247 16-23 (24)
435 PF10205 KLRAQ: Predicted coil 71.6 37 0.0008 24.8 10.7 62 21-82 3-64 (102)
436 PF15035 Rootletin: Ciliary ro 71.5 54 0.0012 26.7 15.8 28 82-109 12-39 (182)
437 COG3364 Zn-ribbon containing p 71.3 2.2 4.8E-05 31.0 1.2 26 219-249 4-29 (112)
438 PF13465 zf-H2C2_2: Zinc-finge 71.1 1.9 4.1E-05 23.0 0.6 14 238-251 12-25 (26)
439 PF12906 RINGv: RING-variant d 71.0 3 6.4E-05 25.9 1.6 39 208-246 1-47 (47)
440 PF12777 MT: Microtubule-bindi 71.0 24 0.00052 31.7 8.0 39 44-82 221-259 (344)
441 PF09723 Zn-ribbon_8: Zinc rib 70.6 1.1 2.3E-05 27.1 -0.5 27 220-248 8-34 (42)
442 PF04582 Reo_sigmaC: Reovirus 70.3 13 0.00029 32.9 6.0 47 137-183 107-153 (326)
443 KOG4603|consensus 70.2 55 0.0012 26.3 13.2 58 87-149 87-144 (201)
444 TIGR00143 hypF [NiFe] hydrogen 69.8 2.1 4.6E-05 42.3 1.1 25 227-251 120-151 (711)
445 PRK10803 tol-pal system protei 69.7 52 0.0011 28.4 9.6 65 43-107 39-103 (263)
446 COG4467 Regulator of replicati 69.7 42 0.00091 24.7 7.7 49 98-146 6-54 (114)
447 smart00249 PHD PHD zinc finger 69.5 1.4 3E-05 26.4 -0.2 40 207-246 1-47 (47)
448 KOG1899|consensus 69.4 1.2E+02 0.0025 29.7 16.5 43 9-51 104-146 (861)
449 TIGR03752 conj_TIGR03752 integ 68.6 1.1E+02 0.0023 28.9 12.3 16 165-180 125-140 (472)
450 PF10013 DUF2256: Uncharacteri 68.5 2.9 6.2E-05 25.3 1.1 12 240-251 8-19 (42)
451 TIGR03185 DNA_S_dndD DNA sulfu 68.3 1.3E+02 0.0027 29.6 20.7 17 13-29 266-282 (650)
452 PF12711 Kinesin-relat_1: Kine 68.0 34 0.00073 24.2 6.5 42 43-84 2-43 (86)
453 KOG4593|consensus 68.0 1.3E+02 0.0028 29.7 27.0 43 40-82 147-189 (716)
454 PF08172 CASP_C: CASP C termin 67.8 59 0.0013 27.9 9.3 30 14-43 4-33 (248)
455 PRK01343 zinc-binding protein; 67.7 4 8.8E-05 26.5 1.7 11 241-251 10-20 (57)
456 KOG3091|consensus 67.7 1E+02 0.0022 29.0 11.3 86 117-202 337-423 (508)
457 smart00132 LIM Zinc-binding do 67.6 4.1 9E-05 23.2 1.7 36 207-251 1-38 (39)
458 PTZ00303 phosphatidylinositol 67.3 2.6 5.7E-05 41.4 1.1 31 206-236 461-500 (1374)
459 PF04012 PspA_IM30: PspA/IM30 67.2 72 0.0016 26.4 23.4 40 37-76 30-69 (221)
460 TIGR01000 bacteriocin_acc bact 67.1 1.1E+02 0.0024 28.5 21.9 16 130-145 245-260 (457)
461 PF10164 DUF2367: Uncharacteri 67.0 1.8 4E-05 31.1 0.0 38 206-250 50-98 (98)
462 PF07889 DUF1664: Protein of u 66.9 55 0.0012 25.0 13.6 83 97-182 40-122 (126)
463 COG1592 Rubrerythrin [Energy p 66.9 1.6 3.5E-05 34.9 -0.3 12 239-250 148-159 (166)
464 PF02148 zf-UBP: Zn-finger in 66.8 2.6 5.6E-05 27.8 0.7 30 208-237 1-35 (63)
465 COG1842 PspA Phage shock prote 66.7 78 0.0017 26.7 20.2 30 50-79 37-66 (225)
466 KOG4718|consensus 66.7 4.1 8.9E-05 33.7 2.0 47 205-252 181-228 (235)
467 PF02994 Transposase_22: L1 tr 66.4 31 0.00067 31.4 7.8 41 136-176 145-185 (370)
468 PRK13729 conjugal transfer pil 66.4 37 0.00079 31.9 8.2 17 164-180 105-121 (475)
469 PF09744 Jnk-SapK_ap_N: JNK_SA 66.4 64 0.0014 25.6 15.1 15 12-26 6-20 (158)
470 PF13913 zf-C2HC_2: zinc-finge 66.4 1.4 2.9E-05 23.5 -0.6 13 241-253 3-15 (25)
471 KOG2169|consensus 66.2 3.7 8.1E-05 40.1 2.0 54 202-255 303-360 (636)
472 PRK00420 hypothetical protein; 65.9 2.2 4.8E-05 31.8 0.3 12 204-215 39-50 (112)
473 KOG3362|consensus 65.7 2.1 4.6E-05 33.1 0.2 32 206-238 119-151 (156)
474 PRK09841 cryptic autophosphory 65.7 1.5E+02 0.0033 29.6 13.8 108 75-182 256-365 (726)
475 PF06005 DUF904: Protein of un 64.7 42 0.00091 22.9 11.6 69 64-132 3-71 (72)
476 COG3677 Transposase and inacti 64.6 8 0.00017 29.6 3.1 54 192-258 17-71 (129)
477 TIGR03545 conserved hypothetic 64.6 1.3E+02 0.0028 29.1 11.8 99 80-178 162-262 (555)
478 COG3883 Uncharacterized protei 64.5 95 0.0021 26.9 25.7 173 16-188 38-229 (265)
479 KOG2789|consensus 64.3 3.3 7.1E-05 37.5 1.1 52 207-258 76-152 (482)
480 COG3024 Uncharacterized protei 64.0 4.7 0.0001 26.7 1.5 20 240-259 7-26 (65)
481 COG4338 Uncharacterized protei 64.0 2.2 4.7E-05 26.5 -0.1 9 243-251 15-23 (54)
482 PF10046 BLOC1_2: Biogenesis o 63.7 53 0.0012 23.7 14.7 97 68-168 3-99 (99)
483 PRK13182 racA polar chromosome 63.5 78 0.0017 25.6 10.0 66 84-151 83-148 (175)
484 PRK03947 prefoldin subunit alp 63.4 65 0.0014 24.6 14.3 96 64-159 5-139 (140)
485 KOG3842|consensus 63.4 5.6 0.00012 35.0 2.3 64 192-260 279-358 (429)
486 PRK10698 phage shock protein P 63.1 91 0.002 26.2 23.8 166 14-179 36-217 (222)
487 COG5151 SSL1 RNA polymerase II 63.1 3.9 8.6E-05 35.8 1.3 41 208-249 365-419 (421)
488 PRK00564 hypA hydrogenase nick 62.8 2.4 5.3E-05 31.9 -0.0 26 224-249 70-97 (117)
489 KOG0269|consensus 62.6 7.5 0.00016 38.2 3.2 53 208-261 782-838 (839)
490 PF05502 Dynactin_p62: Dynacti 62.6 2.7 5.9E-05 39.6 0.3 35 207-251 28-63 (483)
491 KOG0249|consensus 62.4 1.7E+02 0.0037 29.1 17.9 149 19-179 119-267 (916)
492 COG1655 Uncharacterized protei 62.4 1.3 2.7E-05 37.1 -1.7 57 202-258 16-80 (267)
493 PF05010 TACC: Transforming ac 62.2 92 0.002 25.9 26.4 179 4-182 18-201 (207)
494 PRK00418 DNA gyrase inhibitor; 62.1 5.5 0.00012 26.3 1.6 19 240-258 6-27 (62)
495 KOG1814|consensus 62.1 17 0.00037 33.2 5.2 82 149-242 323-411 (445)
496 PF08606 Prp19: Prp19/Pso4-lik 62.1 47 0.001 22.5 6.7 62 2-63 8-69 (70)
497 KOG4787|consensus 61.9 1.6E+02 0.0034 28.6 17.4 173 7-179 330-545 (852)
498 KOG3726|consensus 61.9 4.5 9.7E-05 39.2 1.6 37 207-247 656-696 (717)
499 KOG1853|consensus 61.7 1E+02 0.0023 26.4 21.9 153 20-185 24-179 (333)
500 COG1675 TFA1 Transcription ini 61.5 6.4 0.00014 31.8 2.2 46 198-259 106-151 (176)
No 1
>KOG0978|consensus
Probab=100.00 E-value=9.5e-48 Score=357.45 Aligned_cols=257 Identities=55% Similarity=0.807 Sum_probs=250.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 4 GQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 4 ~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
|+..-++..+|.+||+++|+||++||++|++|++++.+.|++|++||+++++++|.|+.++.++..++.++..+..+++.
T Consensus 442 Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~ 521 (698)
T KOG0978|consen 442 LQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDK 521 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16189 84 MHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAY 163 (262)
Q Consensus 84 ~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~ 163 (262)
+...|.+++++++.++.....+.+++..+.+.++.++++..+..+...+|+..++...+.+.+++..+.+....++.+++
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~ 601 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKF 601 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhccccCcccccccccccceeccccccccHHHHHHHhccCCCCc
Q psy16189 164 KTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKC 243 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~C 243 (262)
+.+++++++..+++++++.++.......+..|.+++..++..++||+|..+|++.|+++|||.||..|+.+++..|+++|
T Consensus 602 k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKC 681 (698)
T KOG0978|consen 602 KRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKC 681 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887777789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCcccccc
Q psy16189 244 PKCNAAFGANDYHRLYL 260 (262)
Q Consensus 244 P~Cr~~~~~~d~~~iy~ 260 (262)
|.|+++||++||++||+
T Consensus 682 P~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 682 PKCNAAFGANDVHRIHL 698 (698)
T ss_pred CCCCCCCCcccccccCC
Confidence 99999999999999997
No 2
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=99.61 E-value=1.6e-14 Score=105.35 Aligned_cols=96 Identities=29% Similarity=0.407 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 14 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
|..||..+.+||++...+...++.+++.+++...+|.+|+.||+|+||++|+.++++..+++.|+.++.++...|.+|++
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16189 94 KERYLQTVLTNVEKEL 109 (262)
Q Consensus 94 ~e~~l~~~i~~lekel 109 (262)
.|..+...+..+|+|+
T Consensus 81 ~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHHHHHHHHhhccC
Confidence 9999999999999873
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.46 E-value=3.8e-14 Score=114.18 Aligned_cols=58 Identities=28% Similarity=0.691 Sum_probs=51.1
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhcc---------------CCCCccCCCcccCCCCcccccc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET---------------RQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~---------------~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
...+.|+||.+.+++|++++|||.||+.|+..|+.. +...||.|+.++...++.+||-
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 346899999999999999999999999999998742 2357999999999999999984
No 4
>KOG0320|consensus
Probab=99.44 E-value=4.1e-14 Score=111.06 Aligned_cols=55 Identities=38% Similarity=0.905 Sum_probs=49.0
Q ss_pred cCccccccccccc--ceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 205 TLTCPSCKVKRKD--AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 205 ~~~C~iC~~~~~~--~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.+.||||+..+.. |+.++|||+||..||...+.. .++||.||..+....+++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 4889999998844 567899999999999998884 578999999999999999997
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.39 E-value=2.8e-13 Score=83.36 Aligned_cols=39 Identities=38% Similarity=0.886 Sum_probs=32.1
Q ss_pred ccccccccccceeccccccccHHHHHHHhccCCC---CccCC
Q psy16189 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR---KCPKC 246 (262)
Q Consensus 208 C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~---~CP~C 246 (262)
||||.+.|.+|+.++|||+||..|+..+|..... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986543 59987
No 6
>KOG0823|consensus
Probab=99.36 E-value=3e-13 Score=110.87 Aligned_cols=56 Identities=38% Similarity=0.807 Sum_probs=51.3
Q ss_pred ccCcccccccccccceeccccccccHHHHHHHhccCCC--CccCCCcccCCCCccccc
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~--~CP~Cr~~~~~~d~~~iy 259 (262)
..+.|.||.+.-++||++.|||.||+.|+..|+..+.. .||+|+..++...+.+||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 35889999999999999999999999999999987654 389999999999999998
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.32 E-value=1.3e-12 Score=88.02 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=48.2
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+.||||...+.+|++++|||+||..|+..|+.. ...||.||.+++..|+.+.+
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 679999999999999999999999999999986 67899999999888877653
No 8
>KOG0317|consensus
Probab=99.32 E-value=8e-13 Score=111.46 Aligned_cols=56 Identities=29% Similarity=0.717 Sum_probs=48.8
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
.+....|.+|+++..+|..+||||.||++||..|...+. .||.||.+|..+++.-+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVICL 291 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcceeee
Confidence 344688999999999999999999999999999998654 49999999998877544
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.28 E-value=2.3e-12 Score=78.21 Aligned_cols=38 Identities=42% Similarity=1.010 Sum_probs=33.5
Q ss_pred ccccccccccc-eeccccccccHHHHHHHhccCCCCccCC
Q psy16189 208 CPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKC 246 (262)
Q Consensus 208 C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~C 246 (262)
|+||.+.+.+| ++++|||+||..|+..|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68899999999999999987 6889998
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.26 E-value=4.3e-12 Score=81.41 Aligned_cols=45 Identities=36% Similarity=0.854 Sum_probs=40.0
Q ss_pred Ccccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|+||.+.+.+++++||||. ||..|+..|+. +...||+||.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 689999999999999999999 99999999988 6778999999875
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=3e-12 Score=114.85 Aligned_cols=60 Identities=32% Similarity=0.583 Sum_probs=51.9
Q ss_pred HHhccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 199 IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 199 ~~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+..++..+.|+||...|..|++++|||+||..|+..|+.. ...||.|+.+++..++.+.|
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccch
Confidence 4567788999999999999999999999999999999875 45799999999876665544
No 12
>KOG0287|consensus
Probab=99.20 E-value=2.8e-12 Score=109.97 Aligned_cols=58 Identities=24% Similarity=0.540 Sum_probs=50.9
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
+...++|.||.++|+.|+++||||+||+-||..++. .++.||.|..+|...+++..++
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhH
Confidence 344589999999999999999999999999999887 4677999999999888876654
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.16 E-value=2.4e-11 Score=74.54 Aligned_cols=39 Identities=49% Similarity=1.010 Sum_probs=36.1
Q ss_pred ccccccccccce-eccccccccHHHHHHHhc-cCCCCccCC
Q psy16189 208 CPSCKVKRKDAV-LTKCFHVFCWDCLRTRYE-TRQRKCPKC 246 (262)
Q Consensus 208 C~iC~~~~~~~v-~l~CgH~fC~~Ci~~~~~-~~~~~CP~C 246 (262)
|+||...+..++ +++|||.||..|+..|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999999 667789988
No 14
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.15 E-value=9.3e-12 Score=81.74 Aligned_cols=53 Identities=30% Similarity=0.660 Sum_probs=30.6
Q ss_pred hccccCccccccccccccee-ccccccccHHHHHHHhccCCCCccCCCcccCCCCcc
Q psy16189 201 EYKETLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~ 256 (262)
.++..+.|++|...++.||. ..|.|+||+.|+...+.+ .||+|+.|.-..|++
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS--
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHH
Confidence 45667999999999999986 599999999999887664 499999999888875
No 15
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.14 E-value=3.2e-11 Score=83.62 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=45.1
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
.+.||||+..+.+||+++|||+|+..||..|+..+...||.|+.++...++.+.+
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 4889999999999999999999999999999998789999999999988877653
No 16
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.14 E-value=1.3e-11 Score=103.80 Aligned_cols=54 Identities=28% Similarity=0.549 Sum_probs=46.6
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~ 256 (262)
+...+.|-||..+++.|+.++|||+||+-||..++.. ++.||.||.++...-.+
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLR 75 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcc
Confidence 4556899999999999999999999999999999984 56799999998654433
No 17
>KOG2164|consensus
Probab=99.13 E-value=2.1e-11 Score=110.28 Aligned_cols=57 Identities=26% Similarity=0.663 Sum_probs=52.1
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccC----CCCccCCCcccCCCCccccccC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR----QRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
...||||..++.-|+.+.|||.||..||-.+|... ...||.|+..+...|+.+||+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 68899999999999999999999999999998765 4679999999999999999874
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.12 E-value=3.6e-11 Score=100.98 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=40.8
Q ss_pred cccCcccccccccccc--------eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 203 KETLTCPSCKVKRKDA--------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~--------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.....|+||++.+.++ ++++|||.||..|+..|+. +...||.||.+|..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 3458899999986542 5669999999999999987 56789999999974
No 19
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.11 E-value=2.6e-11 Score=75.55 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=34.0
Q ss_pred cccccccccc---cceeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 207 TCPSCKVKRK---DAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 207 ~C~iC~~~~~---~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
.|+||.+.+. .++.++|||.||.+|+..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999984 4577899999999999999986 56899996
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=99.10 E-value=6.2e-11 Score=96.69 Aligned_cols=58 Identities=26% Similarity=0.610 Sum_probs=45.4
Q ss_pred ccccCcccccccccc---------cceeccccccccHHHHHHHhccC-----CCCccCCCcccCCCCccccc
Q psy16189 202 YKETLTCPSCKVKRK---------DAVLTKCFHVFCWDCLRTRYETR-----QRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~---------~~v~l~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~d~~~iy 259 (262)
......|+||++... -+++.+|+|+||..|+..|...+ .+.||.||.+|..=.+.++|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 344688999998642 14667999999999999998754 34599999999866666666
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.08 E-value=4.4e-11 Score=73.53 Aligned_cols=36 Identities=42% Similarity=0.915 Sum_probs=23.0
Q ss_pred cccccccccc----ceeccccccccHHHHHHHhccC---CCCcc
Q psy16189 208 CPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETR---QRKCP 244 (262)
Q Consensus 208 C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~---~~~CP 244 (262)
||||.+ |.+ |+.|+|||+||.+|+..++..+ .++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 8999999999999999999854 56787
No 22
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.06 E-value=1.3e-10 Score=72.20 Aligned_cols=44 Identities=30% Similarity=0.845 Sum_probs=37.5
Q ss_pred cccccccccccceec-cccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 207 TCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
.|+||...+..++.+ +|||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999666655 59999999999999987678899998754
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.05 E-value=1.3e-10 Score=72.42 Aligned_cols=41 Identities=37% Similarity=0.805 Sum_probs=35.2
Q ss_pred ccccccccc---ccceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 207 TCPSCKVKR---KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 207 ~C~iC~~~~---~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
.|++|...| ..+++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999998 356889999999999999987 45678999984
No 24
>KOG0978|consensus
Probab=99.01 E-value=9.2e-08 Score=90.83 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=145.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAI 88 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i 88 (262)
.+...+..|+..+..+|..+-......-+-+.++.+.|.+|..++.++++++|.+|.++..+....+.|+.....+...|
T Consensus 433 ~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i 512 (698)
T KOG0978|consen 433 RQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI 512 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRL 168 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~ 168 (262)
..++.....+...+..++.+.+.+............-..+.+..++.....+...+..++..+......++.........
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776665555555555556667777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 169 QEEIAQLRRKTERMK 183 (262)
Q Consensus 169 e~e~~~l~~~~~~~~ 183 (262)
..+++..+.+..+++
T Consensus 593 ~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 593 ELELEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666655544
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.00 E-value=2.8e-10 Score=68.23 Aligned_cols=39 Identities=38% Similarity=0.972 Sum_probs=35.9
Q ss_pred ccccccccccceeccccccccHHHHHHHhccCCCCccCC
Q psy16189 208 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246 (262)
Q Consensus 208 C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~C 246 (262)
|+||......+++++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999999999999999999999999998667789987
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.98 E-value=1.9e-06 Score=72.47 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q psy16189 27 DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYL--QTVLTN 104 (262)
Q Consensus 27 ~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l--~~~i~~ 104 (262)
.++.+..++--...+....+.++.+++..++..+.++..+.+.++.++..+...+.+..+.+...++..... ...+..
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555566666666667777788888888888888888888888888888888887777777776666544332 223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 105 VEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTE 153 (262)
Q Consensus 105 lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 153 (262)
|..++...+.....+...+.++......+..++..+..++......+.+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444444444444444444444433333333
No 27
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=4.6e-10 Score=97.03 Aligned_cols=56 Identities=21% Similarity=0.669 Sum_probs=45.7
Q ss_pred cCcccccccc-cccce----eccccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 205 TLTCPSCKVK-RKDAV----LTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 205 ~~~C~iC~~~-~~~~v----~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
...||+|... +.+|. +.+|||.||.+|+...|..+...||.|+.++...++.+..|
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc
Confidence 3679999994 44552 22799999999999999877888999999999888777655
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.4e-10 Score=93.38 Aligned_cols=51 Identities=25% Similarity=0.523 Sum_probs=44.3
Q ss_pred cCcccccccccccceeccccccccHHHHHH-HhccCCCCccCCCcccCCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRT-RYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~-~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
.+.|++|.+....|..++|||.||..|+-. |-..+.-.||.||+.....++
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 578999999999999999999999999999 666555569999998876655
No 29
>KOG2177|consensus
Probab=98.68 E-value=6.7e-09 Score=90.75 Aligned_cols=47 Identities=38% Similarity=0.821 Sum_probs=42.2
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
.+...+.|+||...|..|++++|||+||..|+..++. ....||.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 3556799999999999999999999999999999998 6678999993
No 30
>KOG4172|consensus
Probab=98.66 E-value=2.2e-09 Score=67.59 Aligned_cols=52 Identities=29% Similarity=0.580 Sum_probs=45.5
Q ss_pred Ccccccccccccceeccccccc-cHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
-.|.||.+.+.+.|+-.|||+. |+.|--+.+...+..||.||+|+. |+.+.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~--dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK--DVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH--HHHHhh
Confidence 5799999999999999999997 999999988877888999999874 566655
No 31
>KOG0824|consensus
Probab=98.55 E-value=2.7e-08 Score=84.67 Aligned_cols=48 Identities=25% Similarity=0.693 Sum_probs=44.8
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
-.|+||.....-|+.++|+|.||.-||+..+..++..||+||.||..+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 569999999999999999999999999999998999999999999764
No 32
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.53 E-value=7.2e-08 Score=66.67 Aligned_cols=41 Identities=27% Similarity=0.747 Sum_probs=32.3
Q ss_pred Ccccccccccccc-------------eeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 206 LTCPSCKVKRKDA-------------VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 206 ~~C~iC~~~~~~~-------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
-.|+||...+.++ +..+|||.|...||..|+.. ...||.||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 3499999998322 34589999999999999984 55899997
No 33
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.50 E-value=3.4e-08 Score=79.09 Aligned_cols=45 Identities=31% Similarity=0.714 Sum_probs=39.8
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
.+.|.||...|..||.+.|||.||..|....+. ....|.+|++..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhh
Confidence 467999999999999999999999999998877 346799998765
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.48 E-value=9.9e-05 Score=74.25 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=10.2
Q ss_pred CCccCCCcccCCCCc
Q psy16189 241 RKCPKCNAAFGANDY 255 (262)
Q Consensus 241 ~~CP~Cr~~~~~~d~ 255 (262)
..||.|+.+|...++
T Consensus 452 ~~Cp~C~r~~~~~~~ 466 (880)
T PRK02224 452 GKCPECGQPVEGSPH 466 (880)
T ss_pred ccCCCCCCcCCCcch
Confidence 468888887766544
No 35
>KOG0311|consensus
Probab=98.46 E-value=2.2e-08 Score=86.97 Aligned_cols=59 Identities=25% Similarity=0.746 Sum_probs=50.8
Q ss_pred HHHHHHhccccCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 195 MMEEIREYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 195 l~~e~~~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+.-.+..+...+.||||+..++...++ .|+|-||++||...+..+...||.||+.+...
T Consensus 33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 445566777889999999999887665 89999999999999999999999999988643
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=98.46 E-value=0.00011 Score=73.85 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=10.8
Q ss_pred ccCcccccccccccc
Q psy16189 204 ETLTCPSCKVKRKDA 218 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~ 218 (262)
..-.||+|..++...
T Consensus 450 ~~~~Cp~C~r~~~~~ 464 (880)
T PRK02224 450 EAGKCPECGQPVEGS 464 (880)
T ss_pred hcccCCCCCCcCCCc
Confidence 457799999877543
No 37
>KOG2879|consensus
Probab=98.44 E-value=1.5e-07 Score=79.14 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=39.7
Q ss_pred cCcccccccccccceec-cccccccHHHHHHHhccC-CCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETR-QRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 251 (262)
...||+|...+..|.+. +|||.||..|+....... ...||.|+.+..
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 58899999999999655 799999999999866543 467999999876
No 38
>KOG4628|consensus
Probab=98.40 E-value=1.4e-07 Score=83.09 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=40.2
Q ss_pred Ccccccccccccc---eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+.|... ++|||+|.|-..||++|+......||+|+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 6999999999664 679999999999999999976566999998764
No 39
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2e-07 Score=81.42 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=40.2
Q ss_pred cccCccccccccc-------------ccceeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 203 KETLTCPSCKVKR-------------KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 203 ~~~~~C~iC~~~~-------------~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
..+..|.||++.+ +.|..+||||.+-..|++.|.+ |.-+||.||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcc
Confidence 4468899999983 2247889999999999999998 788999999995
No 40
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.35 E-value=1.7e-07 Score=59.72 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=39.5
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
...|-.|...-...+++||||..|..|... .|..-||+|+++|...++
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCCC
Confidence 466778888777889999999999999876 356679999999976653
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.5e-07 Score=78.87 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=41.6
Q ss_pred ccCccccccccccc---ceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~~---~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
....|.||+..|.. .+.+||.|.|-..|+..|+..-...||+||.+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34789999998843 37789999999999999998666789999998864
No 42
>KOG0802|consensus
Probab=98.33 E-value=2.1e-07 Score=88.38 Aligned_cols=49 Identities=29% Similarity=0.596 Sum_probs=42.5
Q ss_pred ccCccccccccccc-----ceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKD-----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~-----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
....|+||.+.+.. |..++|||.||..|+..|+. +...||.||..+-..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhhhcc
Confidence 35789999999877 78999999999999999998 678899999955433
No 43
>KOG4265|consensus
Probab=98.28 E-value=3.6e-07 Score=79.87 Aligned_cols=55 Identities=22% Similarity=0.615 Sum_probs=45.0
Q ss_pred cccCcccccccccccceeccccccc-cHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.....|.||+...++++++||.|+. |+.|.+..- -..+.||+||.+|.. +..||.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~--ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE--LLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh--hheecc
Confidence 4467899999999999999999997 999998844 346789999999864 344443
No 44
>KOG1813|consensus
Probab=98.24 E-value=3e-07 Score=78.14 Aligned_cols=46 Identities=30% Similarity=0.608 Sum_probs=40.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
.+.|.||...|.+||.+.|||.||..|....+. +...|++|+....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccc-cCCcceecccccc
Confidence 356999999999999999999999999988776 4567999988763
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.17 E-value=1.2e-06 Score=57.36 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=30.2
Q ss_pred ccCcccccccccccceec-cccccccHHHHHHHhc-cCCCCccCC
Q psy16189 204 ETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYE-TRQRKCPKC 246 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~-~~~~~CP~C 246 (262)
..+.|||....|.+||.- .|||+|....|..++. .+...||.-
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 358999999999999874 9999999999999993 345679993
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.15 E-value=0.004 Score=64.31 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQEQ 31 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q~q 31 (262)
..+..+++.+....++++..
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~ 692 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEK 692 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.15 E-value=0.0033 Score=64.85 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 44 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~ 44 (262)
+.+.+-.+++.+...+..++.....+-..+.+...
T Consensus 678 e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 712 (1179)
T TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEE 712 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333333333
No 48
>KOG1785|consensus
Probab=98.13 E-value=9e-07 Score=78.07 Aligned_cols=48 Identities=25% Similarity=0.687 Sum_probs=42.3
Q ss_pred cccccccccccceeccccccccHHHHHHHhccC-CCCccCCCcccCCCC
Q psy16189 207 TCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR-QRKCPKCNAAFGAND 254 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~d 254 (262)
.|-||-++-++..+-||||..|..|+..|..+. ...||+||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 499999999999999999999999999999655 678999999885543
No 49
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.10 E-value=2.6e-06 Score=73.43 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=46.7
Q ss_pred ccccCccccccccccc----ceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
....+.|||+...|.. .++.||||+|+..++...- ....||.|+.+|...|+.+|.-+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCC
Confidence 3456889999998844 2455999999999999963 34569999999999999988654
No 50
>KOG4159|consensus
Probab=98.08 E-value=1.5e-06 Score=78.46 Aligned_cols=49 Identities=27% Similarity=0.710 Sum_probs=43.2
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...+.|.||...+..||.+||||+||..|+.+... ....||.|+.+|..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 56689999999999999999999999999999666 45669999999874
No 51
>KOG4275|consensus
Probab=98.04 E-value=5.9e-07 Score=76.16 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=39.5
Q ss_pred cCcccccccccccceeccccccc-cHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
...|.||++.+.+.++|+|||+. |..|-. ++..||+||..+.. +.+||
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi~r--vvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYIVR--VVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHHHH--HHhhh
Confidence 46799999999999999999998 999954 45689999997743 45555
No 52
>PRK03918 chromosome segregation protein; Provisional
Probab=98.03 E-value=0.01 Score=59.87 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=7.8
Q ss_pred CccCCCcccCCC
Q psy16189 242 KCPKCNAAFGAN 253 (262)
Q Consensus 242 ~CP~Cr~~~~~~ 253 (262)
.||+|+.|++..
T Consensus 437 ~Cp~c~~~L~~~ 448 (880)
T PRK03918 437 KCPVCGRELTEE 448 (880)
T ss_pred CCCCCCCcCCch
Confidence 477777777643
No 53
>KOG2660|consensus
Probab=98.02 E-value=1.9e-06 Score=74.59 Aligned_cols=53 Identities=30% Similarity=0.713 Sum_probs=45.0
Q ss_pred HhccccCcccccccccccce-eccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 200 REYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 200 ~~~~~~~~C~iC~~~~~~~v-~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..+...+.|.+|...+.++. ++-|-|+||.+||-.++.. ...||.|+..++..
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKT 63 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCc
Confidence 34566789999999998874 5599999999999999985 77899999988765
No 54
>KOG2817|consensus
Probab=97.97 E-value=4.5e-06 Score=74.00 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=50.4
Q ss_pred ccccCccccccccc---ccceeccccccccHHHHHHHhccCC--CCccCCCcccCCCCcccccc
Q psy16189 202 YKETLTCPSCKVKR---KDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 202 ~~~~~~C~iC~~~~---~~~v~l~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~d~~~iy~ 260 (262)
+.+.+.|||=.+.- ..|+.+.|||+.|.+-+.....++. ++||+|.......+..+|||
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 44567899866543 4579999999999999999998887 89999999999999999997
No 55
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.94 E-value=0.0069 Score=49.06 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q psy16189 13 ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHK----------LAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~----------~~~~~k~~l~~e~~~l~~~~~ 82 (262)
-|++=|+.+...-..+..+|.++-..+.-.++.+.+|..+.......+. ++.++.+.|......|.....
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666777777777666665544333 333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 83 AMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEK 139 (262)
Q Consensus 83 ~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~ 139 (262)
........++.....+...+..|..+...+....+..+++..++......|+.++-.
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 333333344444444555555555555555555555555555555555555555533
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.89 E-value=0.023 Score=53.42 Aligned_cols=93 Identities=25% Similarity=0.287 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 15 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-------NQLHKLAREEKDILHEQVNALKLQIDAMHTA 87 (262)
Q Consensus 15 ~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka-------~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~ 87 (262)
-..++.+.+-.+++...+..+-..+..+...+.+|.+++... .+.+..+....+.+..++..|..+...+...
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555444444444444444333 3334444455666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 88 IRKLEEKERYLQTVLTNVEK 107 (262)
Q Consensus 88 i~~l~e~e~~l~~~i~~lek 107 (262)
|..|++....+..+....++
T Consensus 222 i~~LEedi~~l~qk~~E~e~ 241 (546)
T PF07888_consen 222 IRELEEDIKTLTQKEKEQEK 241 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777666655555543333
No 57
>KOG4185|consensus
Probab=97.87 E-value=7.2e-06 Score=72.07 Aligned_cols=52 Identities=21% Similarity=0.467 Sum_probs=43.4
Q ss_pred cCcccccccccc------cceeccccccccHHHHHHHhccCCCCccCCCcc--cCCCCcc
Q psy16189 205 TLTCPSCKVKRK------DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAA--FGANDYH 256 (262)
Q Consensus 205 ~~~C~iC~~~~~------~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~--~~~~d~~ 256 (262)
...|.||...|. .|.++.|||+||..|+.+........||+||.+ +...++.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~ 62 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVK 62 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHh
Confidence 478999999884 478889999999999999998888889999999 4444443
No 58
>PRK11637 AmiB activator; Provisional
Probab=97.87 E-value=0.023 Score=52.67 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=53.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHT 86 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~ 86 (262)
.+++.+.+..+|+.+.+...+++.+...+..++...+..+..+..+.....+....+..+.+.++.++..++..++...+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777776666666666666666666666666666666666666666555544
Q ss_pred HH
Q psy16189 87 AI 88 (262)
Q Consensus 87 ~i 88 (262)
.+
T Consensus 125 ~l 126 (428)
T PRK11637 125 LL 126 (428)
T ss_pred HH
Confidence 44
No 59
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.86 E-value=0.026 Score=53.07 Aligned_cols=88 Identities=24% Similarity=0.370 Sum_probs=61.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHT 86 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~ 86 (262)
...+.+.|..+...+......|+.++.++-..+........+|..+.-........+..+++.|..+...+...+..+..
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888888888888777777777777777665555556666667777777777766666666665
Q ss_pred HHHHHHHH
Q psy16189 87 AIRKLEEK 94 (262)
Q Consensus 87 ~i~~l~e~ 94 (262)
.|..+..+
T Consensus 228 di~~l~qk 235 (546)
T PF07888_consen 228 DIKTLTQK 235 (546)
T ss_pred HHHHHHHH
Confidence 55555443
No 60
>KOG0297|consensus
Probab=97.86 E-value=6.5e-06 Score=74.98 Aligned_cols=52 Identities=35% Similarity=0.762 Sum_probs=45.3
Q ss_pred ccccCccccccccccccee-ccccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 202 YKETLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
+...+.|++|...+.+|+. +.|||.||..|+..|... +..||.|+.+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhh
Confidence 4556999999999999998 499999999999999886 788999988776543
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.85 E-value=0.0051 Score=51.95 Aligned_cols=109 Identities=23% Similarity=0.236 Sum_probs=60.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 4 GQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS--NQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 4 ~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka--~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
|.+.+++.+++...+..+..++++++.|...+-..+.+......++......+ .--|.++..+.+.+.....+|...+
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777666666655554333111 3444455555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 82 DAMHTAIRKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 82 ~~~~~~i~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
......+..+.+....+...+..+++.+...
T Consensus 113 ~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 113 AELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333
No 62
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.84 E-value=1.4e-05 Score=56.07 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=36.0
Q ss_pred cCcccccccccc-----------c-c-eeccccccccHHHHHHHhccC--CCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRK-----------D-A-VLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~-----------~-~-v~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 252 (262)
.-.|+||...|. + | +.-.|+|.|-..||..|+.+. ...||.||.++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 355777766663 2 3 334899999999999999964 4679999998854
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.83 E-value=7.8e-06 Score=69.70 Aligned_cols=43 Identities=35% Similarity=0.824 Sum_probs=38.8
Q ss_pred Ccccccccccccceec-cccccccHHHHHHHhccCCCCccCCCc
Q psy16189 206 LTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
+.|+.|+...++|+.+ -|||+||..||..-+-...+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8899999999999888 679999999999877767789999976
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=97.72 E-value=0.068 Score=53.93 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=4.7
Q ss_pred ccccccccc
Q psy16189 207 TCPSCKVKR 215 (262)
Q Consensus 207 ~C~iC~~~~ 215 (262)
.||+|..+.
T Consensus 437 ~Cp~c~~~L 445 (880)
T PRK03918 437 KCPVCGREL 445 (880)
T ss_pred CCCCCCCcC
Confidence 455555543
No 65
>KOG1571|consensus
Probab=97.72 E-value=1.1e-05 Score=70.85 Aligned_cols=50 Identities=28% Similarity=0.594 Sum_probs=37.1
Q ss_pred ccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
....|.||...+.+.+.+||||+.| |..-.. ..+.||.||..+.. +.++|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~~--~~k~y 353 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIRL--VRKRY 353 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHHH--HHHHh
Confidence 3567999999999999999999986 544322 23459999997754 35555
No 66
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.72 E-value=0.023 Score=48.39 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 14 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
+-...+....++..+...+..--..+..++..+..+..-...++.+|..+......++..+......++.....|..|++
T Consensus 69 ~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 69 AEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 33344444444444444444444444455555555555555555555555555555555555444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 94 KERYLQTVLTNVEKE 108 (262)
Q Consensus 94 ~e~~l~~~i~~leke 108 (262)
.-+.+...+..|+..
T Consensus 149 el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 149 ELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 444444444433333
No 67
>KOG0161|consensus
Probab=97.72 E-value=0.034 Score=59.50 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
+.+....+..+...+.+++..+.++...++.++.....++.....+...++.++.
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666666666666555555555555555554443
No 68
>KOG3039|consensus
Probab=97.71 E-value=2.6e-05 Score=64.80 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=45.3
Q ss_pred ccCcccccccccccc----eeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 204 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
..+.||+|...+.+. ++-||||+||..|+...+..+ -.||+|+.++...|+..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 457899999988764 455999999999999988754 459999999999988754
No 69
>KOG0161|consensus
Probab=97.66 E-value=0.053 Score=58.09 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQLR 176 (262)
Q Consensus 164 ~~~~~e~e~~~l~ 176 (262)
....+..++..++
T Consensus 1126 ~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1126 QRRDLSEELEELK 1138 (1930)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 70
>KOG1039|consensus
Probab=97.66 E-value=2.3e-05 Score=69.49 Aligned_cols=55 Identities=22% Similarity=0.609 Sum_probs=41.3
Q ss_pred cCcccccccccccce-----e---ccccccccHHHHHHHhccCC------CCccCCCcccCCCCccccc
Q psy16189 205 TLTCPSCKVKRKDAV-----L---TKCFHVFCWDCLRTRYETRQ------RKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v-----~---l~CgH~fC~~Ci~~~~~~~~------~~CP~Cr~~~~~~d~~~iy 259 (262)
...|.||++....++ + .+|-|.||..|+..|-..+. +.||.||.+........+|
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~W 229 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFW 229 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccccee
Confidence 578999999875554 3 67999999999999875444 6799999977654333333
No 71
>KOG1002|consensus
Probab=97.65 E-value=1.8e-05 Score=72.33 Aligned_cols=52 Identities=25% Similarity=0.653 Sum_probs=43.7
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhcc----CCCCccCCCcccCCCC
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET----RQRKCPKCNAAFGAND 254 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~d 254 (262)
.....|.+|.++-.+++...|.|.||.-|+..++.. ...+||+|..+++..+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 345789999999999999999999999999777653 3467999999987654
No 72
>KOG0825|consensus
Probab=97.64 E-value=9e-06 Score=77.31 Aligned_cols=53 Identities=23% Similarity=0.495 Sum_probs=40.5
Q ss_pred Ccccccccccccce---eccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 206 LTCPSCKVKRKDAV---LTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 206 ~~C~iC~~~~~~~v---~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
..||+|...|.+.. -.+|+|.||..|+..|... .-.||+||..|+.-+|.-.|
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~eS~ 179 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVLEST 179 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeeeccc
Confidence 45888887776542 2499999999999998873 45799999999876655433
No 73
>KOG0828|consensus
Probab=97.64 E-value=2.3e-05 Score=71.04 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=40.0
Q ss_pred ccCcccccccccc-----------------cceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRK-----------------DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~-----------------~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...-|+||+.... +...+||-|.|-..|+..|..+..-.||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3466999999752 234569999999999999999777789999999863
No 74
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.63 E-value=1.6e-05 Score=65.82 Aligned_cols=49 Identities=22% Similarity=0.676 Sum_probs=39.2
Q ss_pred cCcccccccc-cccc--eec--c-ccccccHHHHHHHhccCCCCcc--CCCcccCCC
Q psy16189 205 TLTCPSCKVK-RKDA--VLT--K-CFHVFCWDCLRTRYETRQRKCP--KCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~-~~~~--v~l--~-CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~ 253 (262)
...||+|... |-+| .++ | |.|.+|.+|+++.+..|+..|| .|+.-+...
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 4689999984 5555 222 5 9999999999999999999999 898766543
No 75
>KOG1645|consensus
Probab=97.63 E-value=1.5e-05 Score=70.84 Aligned_cols=55 Identities=25% Similarity=0.539 Sum_probs=44.2
Q ss_pred cCcccccccccccc-----eeccccccccHHHHHHHhccCC-CCccCCCcccCCCCccccc
Q psy16189 205 TLTCPSCKVKRKDA-----VLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-----v~l~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~d~~~iy 259 (262)
..+||||.+.|.-+ +++.|||.|..+||..|+.... ..||.|...-..+++.+.|
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 36899999988654 6789999999999999995221 2499998887777777766
No 76
>KOG0250|consensus
Probab=97.62 E-value=0.067 Score=53.67 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 101 VLTNVEKELHLRNQAM-DLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKT 179 (262)
Q Consensus 101 ~i~~lekel~~~~~~~-~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~ 179 (262)
.+..+++++..+.... ........+....+..|..+++.++.+++.+..........+..........+..+..+++++
T Consensus 373 ~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444433222 233334445555555566666666666555555555555554444444444444444444443
Q ss_pred H
Q psy16189 180 E 180 (262)
Q Consensus 180 ~ 180 (262)
+
T Consensus 453 ~ 453 (1074)
T KOG0250|consen 453 E 453 (1074)
T ss_pred H
Confidence 3
No 77
>KOG0250|consensus
Probab=97.61 E-value=0.097 Score=52.58 Aligned_cols=148 Identities=21% Similarity=0.274 Sum_probs=81.4
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy16189 37 QQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKEL-HLRNQA 115 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel-~~~~~~ 115 (262)
+.+++.+..+..+..+..--+--...+++..+.+..++..++.........|.+++.....+..+|..++++. ..+...
T Consensus 316 ~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~ 395 (1074)
T KOG0250|consen 316 QKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSE 395 (1074)
T ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444444444444433344444444444444444445555544445555555666666666666666666 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 116 MDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 116 ~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
+.....+...+.+++..+..++..+......+.........+.......+..+...+......+..+++
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666666666666666666666666666666666666655555555555555555555555543
No 78
>KOG0827|consensus
Probab=97.59 E-value=2.9e-05 Score=68.50 Aligned_cols=51 Identities=25% Similarity=0.579 Sum_probs=38.3
Q ss_pred Ccccccccccccc----eeccccccccHHHHHHHhccCC--CCccCCCcccCCCCcc
Q psy16189 206 LTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQ--RKCPKCNAAFGANDYH 256 (262)
Q Consensus 206 ~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~d~~ 256 (262)
-.|.||.+.+.+. .+-.|||+|-..|+..|+...+ |.||.|+..++...+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 5699996655433 2336999999999999999765 4799999666655444
No 79
>KOG0826|consensus
Probab=97.57 E-value=2.3e-05 Score=67.82 Aligned_cols=56 Identities=23% Similarity=0.498 Sum_probs=48.3
Q ss_pred cCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 205 TLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
.-.||+|.....+|..+ .-|.+||..|+..++. ....||+-+.|....++.++|-+
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHhcC
Confidence 45699999998888555 5599999999999988 56789999999999999998865
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.56 E-value=0.079 Score=50.36 Aligned_cols=140 Identities=18% Similarity=0.234 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy16189 45 ANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKR--- 121 (262)
Q Consensus 45 ~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~--- 121 (262)
.+..+..|+..++.....+..+...|...+..|+..+++.+..+..+.+.+......+..|+.++...+..++...-
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 35566677777777777777788888889999999999999999999999999999999999999988888764322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 122 ----KAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 122 ----k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
...++...+..+..+.+..+......+..+.....+++..+..+..++..+....+.++..+.
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKa 428 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKA 428 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344445555555555555555555566666666666666666666666666665555544
No 81
>KOG0804|consensus
Probab=97.55 E-value=2.7e-05 Score=69.93 Aligned_cols=45 Identities=29% Similarity=0.694 Sum_probs=36.9
Q ss_pred ccCcccccccccccc----eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 204 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..-+||||.+++.+. +.+.|.|+|-..|+..|+.. .||+||-...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 357899999998654 45699999999999999874 6999987544
No 82
>KOG0999|consensus
Probab=97.51 E-value=0.046 Score=50.97 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-NQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka-~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
.++.+..+.||+.+..||-+.+.+..+--.+=.++++.++.-.+-+.-. .++.+.+..+...++.++...+..++
T Consensus 56 eaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~e 131 (772)
T KOG0999|consen 56 EAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENE 131 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999888776655555555555433332222 34444444443334443333333333
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.50 E-value=0.049 Score=46.33 Aligned_cols=80 Identities=10% Similarity=0.075 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
..+..+++......+........+-..+.-+++.+-+...-...+.++...+....+....-.+.|..........|..|
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~l 97 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEEL 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444555555555555555555555666555555555555555566666666666666555555555555444444433
No 84
>KOG0971|consensus
Probab=97.49 E-value=0.099 Score=51.47 Aligned_cols=171 Identities=22% Similarity=0.286 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH--------------HHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQ--------AFEDMQEQNSRLLQQLREKDDANFKLMTERIKS--------------NQLHKLAREEK 67 (262)
Q Consensus 10 ~~~~l~~Eie~~~~--------a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka--------------~q~~~~~~~~k 67 (262)
+.+.|.+||+.=|- -|..+..||.+|-.-+..+.|.+..-..+..|+ ......+.++.
T Consensus 347 dlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~ 426 (1243)
T KOG0971|consen 347 DLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSREL 426 (1243)
T ss_pred HHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44566777765432 378899999999888877776655444444443 23333333344
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---
Q psy16189 68 DILHEQVNALKLQIDAM---HTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS-AADLKLHLEKY--- 140 (262)
Q Consensus 68 ~~l~~e~~~l~~~~~~~---~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~-~~~l~~~l~~l--- 140 (262)
+.+++.+..|+.|++.. .+.+.+|.++.-++..++-.||.++..+.. ++.....+.+.+++ ..+|+.+++.+
T Consensus 427 d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~ 505 (1243)
T KOG0971|consen 427 DQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGA 505 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444445555555543 245566666666667777777777776632 22233344444443 44566666654
Q ss_pred ----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 141 ----HAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 141 ----~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
..++...+.-+-+.+..+-+.+.....+++.+..++.+...
T Consensus 506 ~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~S 550 (1243)
T KOG0971|consen 506 RKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQES 550 (1243)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45555555556666666777777777777777766654433
No 85
>KOG4674|consensus
Probab=97.48 E-value=0.11 Score=54.98 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=70.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 4 GQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 4 ~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
..+++.....|...|+....-.+.+..++..+...|...+..+..+..+...++-+...+.-+...|..|...++..-+.
T Consensus 684 ~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~r 763 (1822)
T KOG4674|consen 684 LNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEER 763 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999988888888777777777777666655444
Q ss_pred HHHHHHH
Q psy16189 84 MHTAIRK 90 (262)
Q Consensus 84 ~~~~i~~ 90 (262)
+......
T Consensus 764 L~~e~~~ 770 (1822)
T KOG4674|consen 764 LSQELEK 770 (1822)
T ss_pred HHHHHHH
Confidence 4443333
No 86
>PRK09039 hypothetical protein; Validated
Probab=97.48 E-value=0.063 Score=48.23 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKT 165 (262)
Q Consensus 98 l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~ 165 (262)
...++..+..++...+.........+.-+++++..|+.++..++..+...+....+....++.....+
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444444455555555555555555555555555555555544444444333
No 87
>PRK09039 hypothetical protein; Validated
Probab=97.45 E-value=0.079 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16189 15 LNEMEVTGQAFEDMQEQNSRLL 36 (262)
Q Consensus 15 ~~Eie~~~~a~e~~q~q~~~~~ 36 (262)
..+|....+..++++.+...+.
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELA 66 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3444445555555544444433
No 88
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.45 E-value=0.14 Score=50.55 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=34.9
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy16189 4 GQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 53 (262)
Q Consensus 4 ~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~ 53 (262)
|+-.++|..++..+++++...+.+++.=...+--++..++.....|.++.
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdv 345 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDV 345 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456677778888888887777776666666667777777766666665
No 89
>KOG4367|consensus
Probab=97.43 E-value=9.5e-05 Score=66.26 Aligned_cols=36 Identities=28% Similarity=0.695 Sum_probs=31.9
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhcc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET 238 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~ 238 (262)
+..+.||||...|.+|+++||||..|.-|....+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 346899999999999999999999999999876654
No 90
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.42 E-value=0.00012 Score=45.66 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=22.4
Q ss_pred ccccccccc--cceec--cccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 208 CPSCKVKRK--DAVLT--KCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 208 C~iC~~~~~--~~v~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
||+|...+. +.-+. +||+.+|..|...........||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788888762 22344 77999999999998876677899999876
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.38 E-value=0.043 Score=42.94 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAI----------ESAQSAADLKL 135 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~----------e~~~~~~~l~~ 135 (262)
+++.....+..+..++........++......|..++..++.++..+...+...+.++. .+.+.+.-|..
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 33333333333333333333333333333344444444444444443333332222222 23333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 136 ~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
+++.....+......+...+...+....+.+.++.+......+++.+
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555554444
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.37 E-value=0.044 Score=42.89 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 13 ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLE 92 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~ 92 (262)
+|..|.+....-++.+..+.. +.++.+.++-.+..-...+...+..+.+.+...+..++..++.........+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K-------~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVK-------QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 444454444444444443333 3333333333333333444444555555555555555555554443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 93 EKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVT 152 (262)
Q Consensus 93 e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~ 152 (262)
.+..+|..||.++......+.....++.+.......+.+.+..+..+.......+.
T Consensus 77 ----~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 77 ----QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred ----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 56677777777777666555544445555544444444444444444444333333
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.36 E-value=0.15 Score=48.77 Aligned_cols=15 Identities=33% Similarity=0.078 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHhhH
Q psy16189 42 KDDANFKLMTERIKS 56 (262)
Q Consensus 42 ~e~~~~kl~~e~~ka 56 (262)
.++.+.++..+..++
T Consensus 253 ~~~~L~~l~~~~~~~ 267 (562)
T PHA02562 253 PSAALNKLNTAAAKI 267 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 94
>KOG4692|consensus
Probab=97.33 E-value=0.00011 Score=64.31 Aligned_cols=46 Identities=24% Similarity=0.607 Sum_probs=40.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...||||..-..+.++.||||.-|+.||..++-+ ...|.+|++.+.
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred cccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 4679999999999999999999999999998874 455999988664
No 95
>KOG3002|consensus
Probab=97.30 E-value=0.00012 Score=64.03 Aligned_cols=43 Identities=30% Similarity=0.756 Sum_probs=35.7
Q ss_pred ccCcccccccccccceeccc--cccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKC--FHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..+.||||...+..| +..| ||+.|.+|-.. ....||+|+.+++
T Consensus 47 ~lleCPvC~~~l~~P-i~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP-IFQCDNGHLACSSCRTK----VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc-ceecCCCcEehhhhhhh----hcccCCccccccc
Confidence 357899999999888 5556 99999999865 3457999999998
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.27 E-value=0.32 Score=51.44 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
.++-.+++.+...++.++.....+-.+|..+.+.+..+..++.+... .+. .+..+..++..+...+..+...|..+
T Consensus 832 ~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~---~l~-~r~~le~~L~el~~el~~l~~~~~~~ 907 (1311)
T TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT---NLQ-RRQQFEEQLVELSTEVQSLIREIKDA 907 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555554444444444444433 111 33444444444444444443333333
No 97
>PRK11637 AmiB activator; Provisional
Probab=97.24 E-value=0.17 Score=46.92 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
+.+..+++.+.+..++++.....+-.++.+.+..+..+..+...+...+.....+...++.++..++..+......|...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666776766666666666666555
Q ss_pred HH
Q psy16189 92 EE 93 (262)
Q Consensus 92 ~e 93 (262)
.+
T Consensus 123 ~~ 124 (428)
T PRK11637 123 ER 124 (428)
T ss_pred HH
Confidence 44
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=97.22 E-value=0.3 Score=49.49 Aligned_cols=6 Identities=50% Similarity=1.580 Sum_probs=2.3
Q ss_pred cccccc
Q psy16189 208 CPSCKV 213 (262)
Q Consensus 208 C~iC~~ 213 (262)
||+|..
T Consensus 455 Cp~c~~ 460 (895)
T PRK01156 455 CPVCGT 460 (895)
T ss_pred CCCCCC
Confidence 333333
No 99
>KOG3800|consensus
Probab=97.21 E-value=0.00022 Score=60.93 Aligned_cols=35 Identities=23% Similarity=0.729 Sum_probs=31.6
Q ss_pred cccccccHHHHHHHhccCCCCccCCCcccCCCCcc
Q psy16189 222 KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256 (262)
Q Consensus 222 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~ 256 (262)
+|||..|.+|++..+..+...||.|+.++..+.+.
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 99999999999999999999999999988766553
No 100
>KOG0995|consensus
Probab=97.20 E-value=0.2 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLR 40 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~ 40 (262)
.....+..-+++++.+|.++..+|.
T Consensus 228 ~~~~~i~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 228 KYFTSIANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466667777777777777666
No 101
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.20 E-value=0.28 Score=48.58 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMT 51 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~ 51 (262)
+..+++........+-..+.+.++.+..|.+
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~ 259 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRS 259 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444
No 102
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.16 E-value=0.096 Score=42.54 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=29.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 33 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 33 ~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+-|+..|.+++.-+.+|.-|..|.......+..-...|..++..|+.++.
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666655555555555555554444
No 103
>KOG1029|consensus
Probab=97.14 E-value=0.17 Score=49.21 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 14 LLNEMEVTGQAFEDMQEQ 31 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q 31 (262)
=..||+....|-+++..|
T Consensus 391 rkkeie~rEaar~ElEkq 408 (1118)
T KOG1029|consen 391 RKKEIERREAAREELEKQ 408 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=97.12 E-value=0.0033 Score=47.69 Aligned_cols=50 Identities=20% Similarity=0.509 Sum_probs=42.3
Q ss_pred ccCcccccccccccceec----cccccccHHHHHHHhccC--CCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLT----KCFHVFCWDCLRTRYETR--QRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l----~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~ 253 (262)
....|.||.+...+..++ -||-..|.-|--..|..- ++.||+|.++|..+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 347899999998888777 699999999999988743 57899999999654
No 105
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.08 E-value=0.12 Score=42.46 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 60 HKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEK 139 (262)
Q Consensus 60 ~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~ 139 (262)
...+....+.+..|++.|+...-.+...|.++++.+..+...+.....++..++..+...+.+.....+.+.+...++..
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788888888888888888888888888888888888888888877776666666666666666666666
Q ss_pred HHHHHHHHHHHH
Q psy16189 140 YHAQLKEAQQVV 151 (262)
Q Consensus 140 l~~~~~~~~~~~ 151 (262)
+.+.+..+...+
T Consensus 101 ~~~~l~~L~~L~ 112 (194)
T PF15619_consen 101 TKDELKHLKKLS 112 (194)
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 106
>KOG4674|consensus
Probab=97.08 E-value=0.51 Score=50.36 Aligned_cols=176 Identities=19% Similarity=0.284 Sum_probs=94.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--H--HHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF--K--LMTER-IKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~--k--l~~e~-~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
....++|..|+......+.++..||+.+-.+|.++-+... . .+.+. ......+..++.+++.++.++..++..+.
T Consensus 1098 ~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~ 1177 (1822)
T KOG4674|consen 1098 SEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENA 1177 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHH
Confidence 4567899999999999999999999999999887666533 1 11111 11234444555555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 83 AMHTAIRKLEEKERYLQTVL-----------------TNVEKE---LHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHA 142 (262)
Q Consensus 83 ~~~~~i~~l~e~e~~l~~~i-----------------~~leke---l~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~ 142 (262)
.....+.-+......++..+ ..+-+. +..+...+-.+.....-....+.+++..+++++.
T Consensus 1178 ~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~ 1257 (1822)
T KOG4674|consen 1178 RLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNF 1257 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333322221111111111 111111 1111122222222222222335556666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 143 QLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMK 183 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~ 183 (262)
.+..++..+.++..++......+..++.+...-+.+...+.
T Consensus 1258 el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1258 ELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666677777666666555553
No 107
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.06 E-value=0.56 Score=49.65 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=46.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 5 QVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT---ERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 5 ~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~---e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
.....+.+++..+++.+...++.++.+...+-..+.+..+...++.. .+....-....+..+...+..++..+...+
T Consensus 832 ~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888999999999999998888884444443333333332 333333333444444444444444444444
Q ss_pred HHHH
Q psy16189 82 DAMH 85 (262)
Q Consensus 82 ~~~~ 85 (262)
....
T Consensus 912 ~~~~ 915 (1311)
T TIGR00606 912 SPLE 915 (1311)
T ss_pred hhhh
Confidence 4333
No 108
>KOG0996|consensus
Probab=97.06 E-value=0.34 Score=49.17 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 18 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKER 96 (262)
Q Consensus 18 ie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka-~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~ 96 (262)
|+.+.+-++++++.... -+++.+..+.+-.+..++.+. +-+...+....+.+.+.+..+...+......|.++.....
T Consensus 867 ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~ 945 (1293)
T KOG0996|consen 867 IEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLS 945 (1293)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHH
Confidence 44444444444433333 344445555555544444444 2333344444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQ 114 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~ 114 (262)
.+...+..+++++..+.+
T Consensus 946 ~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 946 ELEREIEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 109
>KOG0996|consensus
Probab=97.04 E-value=0.46 Score=48.30 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 133 LKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 133 l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
.+..+..+...+..++.++.+....+...+...+.+...+..++.+++.++..
T Consensus 540 ~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 540 KKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555555555555666666665554
No 110
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.03 E-value=0.19 Score=43.68 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVN---ALKLQIDAMHTA 87 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~---~l~~~~~~~~~~ 87 (262)
..+|.++.+.+.+-..+|..+...+..+..+.-+.+..+...+...+.....++..-..+..... .....+......
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~ 115 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLERE 115 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 34445555555555555555555555444444444444444444444333333333222222222 111112222333
Q ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 88 IRKLE----------EKERYLQTVLTNVEKELHLRNQAM 116 (262)
Q Consensus 88 i~~l~----------e~e~~l~~~i~~lekel~~~~~~~ 116 (262)
|.+|. +.+..+-..|..|++++...+..+
T Consensus 116 i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~ 154 (294)
T COG1340 116 IERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKAL 154 (294)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 234555556666666666554433
No 111
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.00 E-value=0.24 Score=48.66 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
.-|-.||..+..-...++....-|-.+|.-++.--..+ ..-...++.+.+.|+..+..|......-+..+..|
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~l-------k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSL-------KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666666655444332333 33344456667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16189 92 EEKERYLQTVLTNVEKELHLRN 113 (262)
Q Consensus 92 ~e~e~~l~~~i~~lekel~~~~ 113 (262)
+.+-+..+..-..+|+||..-+
T Consensus 494 EkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888877543
No 112
>KOG2114|consensus
Probab=97.00 E-value=0.001 Score=64.39 Aligned_cols=41 Identities=29% Similarity=0.662 Sum_probs=34.5
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
..|+.|.....-| |...|||.|-..|+.. +...||.|....
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~----~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLED----KEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhcc----CcccCCccchhh
Confidence 6799999998777 6789999999999883 456899998744
No 113
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.00 E-value=0.00064 Score=46.63 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=27.8
Q ss_pred cccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 222 KCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 222 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
.|.|.|-..||.+|+.++ ..||.||.+|...|
T Consensus 53 ~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~~~~ 84 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTK-GVCPLDRQTWVLAD 84 (88)
T ss_pred ecchHHHHHHHHHHHhhC-CCCCCCCceeEEec
Confidence 899999999999999974 56999999986544
No 114
>KOG0933|consensus
Probab=96.99 E-value=0.46 Score=47.54 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAI 88 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i 88 (262)
.+..-+.++++.+..-+++++.+......-+..-++.+..+......++... .+....+..+++.++..++.+....
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777778888887777777777777777766655555543332 2234566777777777776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLRN 113 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~~ 113 (262)
.+-...-..+.-.++.+++++...+
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k 835 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLK 835 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333444444444333
No 115
>KOG1001|consensus
Probab=96.99 E-value=0.00025 Score=68.66 Aligned_cols=48 Identities=25% Similarity=0.644 Sum_probs=40.6
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCC-CccCCCcccCCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR-KCPKCNAAFGAND 254 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~d 254 (262)
..|++|.+ ...+++++|||.||..|+...+..... .||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 888899999999999999998875543 5999998775433
No 116
>KOG0933|consensus
Probab=96.95 E-value=0.51 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=28.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 40 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~ 40 (262)
.-+..+..+..++..++.|.+|..|...++-.++
T Consensus 692 el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~ 725 (1174)
T KOG0933|consen 692 ELEALERELKSLEAQSQKFRDLKQQLELKLHELA 725 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999988876665
No 117
>KOG0971|consensus
Probab=96.94 E-value=0.49 Score=46.89 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=39.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS 56 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka 56 (262)
.+.|-.+=+.|+|.+.=-++++++=-++++.+..+++-.+.+...+.-.|
T Consensus 246 kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~kea 295 (1243)
T KOG0971|consen 246 KRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEA 295 (1243)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677889999999999999999999999888887777766555444
No 118
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.92 E-value=0.44 Score=46.13 Aligned_cols=175 Identities=18% Similarity=0.253 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN---------QLHKLAREEKDILHEQVNALKLQ 80 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~---------q~~~~~~~~k~~l~~e~~~l~~~ 80 (262)
+.-.+-..|..|+.-...+.+.-...+..+.+++..+.+|..+..... ..--.+..+...|..++..|..+
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555556667777777777765544321 01112222223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 81 IDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAM----------DLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQV 150 (262)
Q Consensus 81 ~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~----------~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~ 150 (262)
+..+...-..|.........++..++..+..+.... ...+-.+......+.+|+.++..++..+..+...
T Consensus 103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 332221111121111112223333343333332222 1222223333344667888888888877777777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 151 VTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 151 ~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
..++...+..+....+.+...+..+..++..++.
T Consensus 183 ~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 183 NMELTSALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776666655543
No 119
>PRK01156 chromosome segregation protein; Provisional
Probab=96.86 E-value=0.65 Score=47.12 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=6.8
Q ss_pred CccCCCcccC
Q psy16189 242 KCPKCNAAFG 251 (262)
Q Consensus 242 ~CP~Cr~~~~ 251 (262)
.||+|+.+..
T Consensus 454 ~Cp~c~~~~~ 463 (895)
T PRK01156 454 VCPVCGTTLG 463 (895)
T ss_pred CCCCCCCcCC
Confidence 4777777666
No 120
>KOG4643|consensus
Probab=96.83 E-value=0.64 Score=46.57 Aligned_cols=44 Identities=30% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 64 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~ 64 (262)
|+.-.+.|++-...+.+++.+.++.-..|+.|+.++........
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~ 456 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVT 456 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666544444433
No 121
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.80 E-value=0.00073 Score=58.30 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=48.0
Q ss_pred hccccCccccccccc---ccceeccccccccHHHHHHHhccC--CCCccCCCcccCCCCcccccc
Q psy16189 201 EYKETLTCPSCKVKR---KDAVLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~---~~~v~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.+...+.||+=.+.- ..|+.+.|||+.-...+.....+| .++||+|...-...++.+|||
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 345567899866543 557999999999999998877666 478999998888889999886
No 122
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.80 E-value=0.53 Score=45.30 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQL----------HKLAREEKDILHEQVNAL 77 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~----------~~~~~~~k~~l~~e~~~l 77 (262)
....+.||.-|+.-..|+........++...+......+..|..|....++. +..+.++...+......+
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~ 367 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI 367 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777778888888888888888777777 344454555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 78 KLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRN 113 (262)
Q Consensus 78 ~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~ 113 (262)
...+.......+.+.+....+...+..++++...+.
T Consensus 368 ~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~ 403 (569)
T PRK04778 368 TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLS 403 (569)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333344443444444444444433333
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.77 E-value=0.36 Score=43.03 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 125 ESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 125 e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~ 178 (262)
.+..++.++..++...+..+.+++..+..+...++.....+..+..++..+.+.
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444433
No 124
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.77 E-value=0.34 Score=42.49 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 60 HKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQ----TVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKL 135 (262)
Q Consensus 60 ~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~----~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~ 135 (262)
..++.+....|+.|+..|+.....+......+++++..+- .++...-.++..+...+..-.........++..|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677888888888877777776667777776653 233334444444444444333344445556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 136 ~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
++-.++.++..+-.+..++...+...+.....+..++..++.++...
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777777777777777777777777887777776554
No 125
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.79 Score=46.68 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=5.2
Q ss_pred cCccccccc
Q psy16189 205 TLTCPSCKV 213 (262)
Q Consensus 205 ~~~C~iC~~ 213 (262)
.-.||+|+.
T Consensus 457 ~~~CPvCg~ 465 (908)
T COG0419 457 GEKCPVCGQ 465 (908)
T ss_pred CCCCCCCCC
Confidence 345666664
No 126
>KOG0977|consensus
Probab=96.75 E-value=0.53 Score=44.54 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 53 RIKSNQLHKLAREEKDILHEQVNALKLQIDAMHT 86 (262)
Q Consensus 53 ~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~ 86 (262)
+..+........++...++.++..|+.+++....
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333333444444444444444444433
No 127
>KOG1100|consensus
Probab=96.67 E-value=0.0011 Score=55.07 Aligned_cols=42 Identities=26% Similarity=0.647 Sum_probs=34.2
Q ss_pred Ccccccccccccceeccccccc-cHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|-.|...-..++++||.|.. |..|-.. -+.||+|+.+...
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ccceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 3399999999998999999875 9999553 4569999987654
No 128
>KOG1493|consensus
Probab=96.63 E-value=0.00089 Score=45.55 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=26.1
Q ss_pred cccccccHHHHHHHhccCC--CCccCCCcccCC
Q psy16189 222 KCFHVFCWDCLRTRYETRQ--RKCPKCNAAFGA 252 (262)
Q Consensus 222 ~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~ 252 (262)
.|.|.|-..||..|+.... ..||.||..|..
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 8999999999999998653 459999998753
No 129
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.63 E-value=0.0019 Score=40.83 Aligned_cols=41 Identities=20% Similarity=0.586 Sum_probs=32.1
Q ss_pred ccccccc--ccccceecccc-----ccccHHHHHHHhccC-CCCccCCC
Q psy16189 207 TCPSCKV--KRKDAVLTKCF-----HVFCWDCLRTRYETR-QRKCPKCN 247 (262)
Q Consensus 207 ~C~iC~~--~~~~~v~l~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr 247 (262)
.|.||.. ...++.+.||. |.|-..|+..|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 34566778994 788999999999755 45799995
No 130
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.63 E-value=0.71 Score=44.44 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 74 VNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 74 ~~~l~~~~~~~~~~i~~l~e 93 (262)
+..++.++......+..+..
T Consensus 319 l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 319 LEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444433
No 131
>KOG2034|consensus
Probab=96.63 E-value=0.0034 Score=61.26 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=35.0
Q ss_pred hHHHHHHHHhccccCccccccccccc-c-eeccccccccHHHHHHHhc
Q psy16189 192 DEVMMEEIREYKETLTCPSCKVKRKD-A-VLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 192 ~~~l~~e~~~~~~~~~C~iC~~~~~~-~-v~l~CgH~fC~~Ci~~~~~ 237 (262)
.+.+......++..-.|.+|..++-. | ++.||||.|-.+|+.....
T Consensus 804 ~~~l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 804 ISKLRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred HHHhhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 44555556667778889999998632 3 6779999999999987664
No 132
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.60 E-value=0.29 Score=39.59 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM-TERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEK 94 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~-~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~ 94 (262)
.+|+.+.--+--++.+..++-.++..+++.---|+ .+-....--...+....+....++..|+.........+...+++
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333331 23333333333334444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 95 ERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLE 138 (262)
Q Consensus 95 e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~ 138 (262)
...+......+..++......+......+.........+...+.
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333333333333333333
No 133
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.59 E-value=0.71 Score=43.97 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=49.2
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy16189 37 QQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVL-------------- 102 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i-------------- 102 (262)
..|.+....+.+...|..........++.+.+....++..++.........|..|......++..+
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~ 367 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAM 367 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence 333344444444444444444444444444444444444444444444444444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 103 TNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTE 153 (262)
Q Consensus 103 ~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 153 (262)
..+...+..+....+..+........++..++.+++..+..+......+..
T Consensus 368 ~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 368 SELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444444444443333333
No 134
>KOG1814|consensus
Probab=96.52 E-value=0.0012 Score=58.98 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=34.1
Q ss_pred ccCcccccccccccc---eeccccccccHHHHHHHhcc----CC---CCccCCCc
Q psy16189 204 ETLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYET----RQ---RKCPKCNA 248 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~---v~l~CgH~fC~~Ci~~~~~~----~~---~~CP~Cr~ 248 (262)
..+.|.||....... +.+||+|.||..|+..++.. +. -+||-|+-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 347899999988764 56799999999999998863 22 34766544
No 135
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.49 E-value=0.54 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 129 SAADLKLHLEKYHAQLKEAQQVVTEK 154 (262)
Q Consensus 129 ~~~~l~~~l~~l~~~~~~~~~~~~~~ 154 (262)
.+..+..++..+......+...+.++
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHH
Confidence 33344444444444444444444333
No 136
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.46 E-value=1.6 Score=46.56 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 15 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR------EEKDILHEQVNALKLQIDAMHTAI 88 (262)
Q Consensus 15 ~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~------~~k~~l~~e~~~l~~~~~~~~~~i 88 (262)
..........++..+....++-..+.+.+..+.+|..+..++........ .+...+...+..+...++.....+
T Consensus 292 r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555666777777777777777755444332 122333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
..+.+....+...+..++.++..+
T Consensus 372 eeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333444444444444433
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.41 E-value=1.3 Score=45.06 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=11.0
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
...||+||.+++..
T Consensus 457 ~~~CPvCg~~l~~~ 470 (908)
T COG0419 457 GEKCPVCGQELPEE 470 (908)
T ss_pred CCCCCCCCCCCCcH
Confidence 45799999888654
No 138
>KOG4673|consensus
Probab=96.41 E-value=0.98 Score=43.53 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH-HhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 13 ALLNEMEVTGQAFEDMQEQN-SRLLQ-QLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRK 90 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q~q~-~~~~~-~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~ 90 (262)
++..|-+.+..-...+.... .+++. .|.|+++.+..||+|..|....+-+--.-...|.+..+.....+.+..+.|..
T Consensus 420 a~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~ 499 (961)
T KOG4673|consen 420 ALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITK 499 (961)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHH
Confidence 33344444443333333332 33444 68899999999999998885444333323333444444333334444444444
Q ss_pred HH
Q psy16189 91 LE 92 (262)
Q Consensus 91 l~ 92 (262)
|.
T Consensus 500 L~ 501 (961)
T KOG4673|consen 500 LQ 501 (961)
T ss_pred HH
Confidence 43
No 139
>KOG1734|consensus
Probab=96.41 E-value=0.001 Score=56.23 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=37.9
Q ss_pred cCccccccccccc----------ceeccccccccHHHHHHHhccCC-CCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKD----------AVLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~----------~v~l~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~ 251 (262)
+..|.||...+.. ...+.|+|+|-..||..|.--+. .+||.|...+.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3669999998743 35689999999999999987553 57999988764
No 140
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.39 E-value=0.69 Score=41.55 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 137 LEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 137 l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
+.....++.+....+......+..-..++++++.+...+......+.+
T Consensus 233 i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 233 IQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555544445555566665555555555543
No 141
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.34 E-value=0.0023 Score=40.65 Aligned_cols=44 Identities=34% Similarity=0.691 Sum_probs=23.2
Q ss_pred Cccccccccccccee-ccccccccHHH---HHHHhccCCCCccCCCcc
Q psy16189 206 LTCPSCKVKRKDAVL-TKCFHVFCWDC---LRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~-l~CgH~fC~~C---i~~~~~~~~~~CP~Cr~~ 249 (262)
+.||+....+..|+. ..|.|.-|++= +......+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 789999999999975 49999988654 333444556789999874
No 142
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.30 E-value=0.00096 Score=45.58 Aligned_cols=47 Identities=30% Similarity=0.602 Sum_probs=23.7
Q ss_pred Ccccccccccc-c---cee--c--cccccccHHHHHHHhcc----CC------CCccCCCcccCC
Q psy16189 206 LTCPSCKVKRK-D---AVL--T--KCFHVFCWDCLRTRYET----RQ------RKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~-~---~v~--l--~CgH~fC~~Ci~~~~~~----~~------~~CP~Cr~~~~~ 252 (262)
..|+||...+- . |+. . .|++.|-..|+..|+.. +. ..||.|+.++..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 67999998754 2 222 2 89999999999999863 11 239999998864
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.29 E-value=1.1 Score=43.01 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHH
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 60 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~ 60 (262)
...+.||.-|+.=..|+.........+...+....+.+..|..|....++.|
T Consensus 285 ~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 285 ERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555555555555555555555555544444433
No 144
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.29 E-value=0.0089 Score=44.02 Aligned_cols=31 Identities=26% Similarity=0.661 Sum_probs=25.1
Q ss_pred cccCcccccccccccc--eeccccccccHHHHH
Q psy16189 203 KETLTCPSCKVKRKDA--VLTKCFHVFCWDCLR 233 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~--v~l~CgH~fC~~Ci~ 233 (262)
.....|++|..++.++ ++.||||.|...|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3357799999999776 445999999999975
No 145
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.28 E-value=0.0018 Score=63.37 Aligned_cols=51 Identities=18% Similarity=0.472 Sum_probs=39.7
Q ss_pred hccccCccccccccc-------ccceeccccccccHHHHHHHhccCC-CCccCCCcccC
Q psy16189 201 EYKETLTCPSCKVKR-------KDAVLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAFG 251 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~-------~~~v~l~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~ 251 (262)
.+.....|+||-... .+..+..|.|-|-..|+-.|+.+.. ..||.||..|+
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345566799998754 2335668999999999999998754 56999998765
No 146
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.27 E-value=0.15 Score=42.02 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy16189 17 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 53 (262)
Q Consensus 17 Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~ 53 (262)
+-+....+|.++=....+|..++.-....+..|..+.
T Consensus 11 ~Rd~~e~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~ 47 (194)
T PF08614_consen 11 ERDRREKAFAELIDAYNRLADRTSLLKAENEQLQPEA 47 (194)
T ss_dssp -------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 3345557777777777888888877777777776653
No 147
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.24 E-value=0.0024 Score=55.74 Aligned_cols=55 Identities=18% Similarity=0.408 Sum_probs=40.1
Q ss_pred Cccccccccccc--ceec--cccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 206 LTCPSCKVKRKD--AVLT--KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 206 ~~C~iC~~~~~~--~v~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
..||.|.+.+.. --+. +||..+|.-|....-..-...||.||..+...+|+-+-+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~ 73 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTL 73 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEec
Confidence 349999998743 2333 789888999987654443456999999998888776544
No 148
>KOG4809|consensus
Probab=96.24 E-value=1.1 Score=42.15 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS---NQLHKLAREEKDILHEQVNALKLQIDAMH 85 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka---~q~~~~~~~~k~~l~~e~~~l~~~~~~~~ 85 (262)
++....-.|+--+.....++..-...-.+.|.++|+.+.+|...+..- .............+..+..+.+... .
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~---e 312 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKV---E 312 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchH---H
Confidence 344444455555555566666666677788889999999987665432 1111111112222333333333331 3
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16189 86 TAIRKLEE----KERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAE 161 (262)
Q Consensus 86 ~~i~~l~e----~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~ 161 (262)
..|.+|++ .++.....|++.+++...++..+........+......+|+.....+.+.....+..+..++-.++.-
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk 392 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK 392 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 67777765 36777888888888888888777766666655555566666666666666666666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 162 AYKTKRLQEEIAQLRRKT 179 (262)
Q Consensus 162 ~~~~~~~e~e~~~l~~~~ 179 (262)
..++-.++..+.+.....
T Consensus 393 kEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 393 KEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 555555555555444433
No 149
>KOG0977|consensus
Probab=96.15 E-value=1.2 Score=42.11 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=49.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMH 85 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~ 85 (262)
..+...|..|++.+..-|++.+.-...-..++.+....+..+.++..-++-.+..+..++.-|..++..|..++....
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344555666666666666666655555555666666677777777766666666666666666666666666555433
No 150
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.15 E-value=1.5 Score=43.13 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhhhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRL--------------LQQLREKDDANFKLMTERIKSNQLHKLAREE 66 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~--------------~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~ 66 (262)
.++...|.+||....+.=.+++.+...+ -++..+++.++..|+..+-+=.+....+++.
T Consensus 424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777773322 2333344455555544444444444444443
No 151
>KOG1941|consensus
Probab=96.15 E-value=0.0018 Score=57.54 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=35.7
Q ss_pred cCccccccccc--ccc--eeccccccccHHHHHHHhcc-CCCCccCCCc
Q psy16189 205 TLTCPSCKVKR--KDA--VLTKCFHVFCWDCLRTRYET-RQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~--~~~--v~l~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~ 248 (262)
.+.|..|.+.+ ++. --+||.|+|-..|+..++.+ +++.||.||.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 48899999986 332 45799999999999988765 4678999994
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.12 E-value=0.71 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=21.3
Q ss_pred ccHHHHHHHhccCCCCccCCCcccCCCCc
Q psy16189 227 FCWDCLRTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 227 fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
.|.+|-+.... ..+.||.|.+.-...+.
T Consensus 196 ~C~sC~qqIHR-NAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHR-NAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhc-CCCCCcccccccccCCC
Confidence 39999988766 45789999987765544
No 153
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.11 E-value=2.3 Score=44.77 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+.+.|..+++.+..+.......-..+-.++......+..+..+...+.+.+.........+..+...++....
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4557778888877777777766666666666666666666666666666666666666666665555555544
No 154
>KOG3161|consensus
Probab=96.11 E-value=0.0019 Score=60.68 Aligned_cols=38 Identities=29% Similarity=0.629 Sum_probs=31.2
Q ss_pred ccCccccccccc----ccceeccccccccHHHHHHHhccCCCCcc
Q psy16189 204 ETLTCPSCKVKR----KDAVLTKCFHVFCWDCLRTRYETRQRKCP 244 (262)
Q Consensus 204 ~~~~C~iC~~~~----~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP 244 (262)
..+.|+||...| ..||.+.|||+.|..|+...+. ..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 347799997766 4589999999999999998765 4688
No 155
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.07 E-value=2.6 Score=45.08 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 62 LAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHL 111 (262)
Q Consensus 62 ~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~ 111 (262)
.+....+.....+..++..+......+..+++....+...+..+..++..
T Consensus 359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~e 408 (1486)
T PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDV 408 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333333333333333333333
No 156
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.04 E-value=0.94 Score=39.75 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=10.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 151 VTEKTSSLEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 151 ~~~~~~~le~~~~~~~~~e~e~~~l~ 176 (262)
+.++.........-+..+++++..++
T Consensus 278 L~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 278 LQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333344444444433
No 157
>KOG0980|consensus
Probab=96.01 E-value=1.8 Score=42.86 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLLQQLR 40 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~ 40 (262)
...++.|++.++...+-+-....+...++.
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~ 364 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYE 364 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 455666666666666655554444444443
No 158
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.98 E-value=1.9 Score=42.70 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKE 108 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~leke 108 (262)
+...+..++..++...+++.+.++...+....+..++..+-..
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666555555555544333
No 159
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.90 E-value=1.1 Score=39.43 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHH
Q psy16189 117 DLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVM 195 (262)
Q Consensus 117 ~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l 195 (262)
...+..+..+...+..++.....+..++.++...+...... ....+..++.++..++..+...... ..+-+.--.|
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~---~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE---YQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH---HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555566566666666666666666555443332222 2334555566666666555544333 2222222334
Q ss_pred HHHHHhccc
Q psy16189 196 MEEIREYKE 204 (262)
Q Consensus 196 ~~e~~~~~~ 204 (262)
..++..|+.
T Consensus 296 d~EIatYR~ 304 (312)
T PF00038_consen 296 DAEIATYRK 304 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 160
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.89 E-value=2 Score=42.26 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 42 KDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKR 121 (262)
Q Consensus 42 ~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~ 121 (262)
....+...++|..+..+....++.+.+.++.+...|+..+ ..++.+|.-+..-.+.||.|.-.++..+..++.
T Consensus 46 ~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~-------ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 46 LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI-------KEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555555443 334444444444444454444444333333332
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 122 KAIE---SAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 122 k~~e---~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
--++ +..++..+..+++-+..+++++-....-...+++..-..++.-.+.-..|++++...
T Consensus 119 sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 119 SQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 223355555566666666666555444445555544444444444445555555553
No 161
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.88 E-value=0.58 Score=35.99 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIR 89 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~ 89 (262)
+...|.+|+..+....++...+...+..++.. ...--..|.+.|..-+..-......+..++.++......|.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~-------q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLES-------QAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556665555555555554444444433 33333344555555444444445555555555555555554
Q ss_pred HHHHH
Q psy16189 90 KLEEK 94 (262)
Q Consensus 90 ~l~e~ 94 (262)
.++..
T Consensus 77 ~l~~~ 81 (132)
T PF07926_consen 77 ELKAE 81 (132)
T ss_pred HHHHH
Confidence 44443
No 162
>KOG3113|consensus
Probab=95.86 E-value=0.0079 Score=50.53 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=43.5
Q ss_pred cccCcccccccccccc----eeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 203 KETLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
...+.|||-.-.+... ++.+|||+|-..-+...- ...||.|++++...|+..|.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeC
Confidence 4468899988877553 556999999999998854 45799999999999988764
No 163
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.81 E-value=0.9 Score=37.64 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy16189 19 EVTGQAFEDMQEQNSRLLQQLREKDDANF-KLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEK--- 94 (262)
Q Consensus 19 e~~~~a~e~~q~q~~~~~~~l~e~e~~~~-kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~--- 94 (262)
+....||.+|. ++..+|+...-..+ .|-.+............+....+..+++.|..-+.+....+..|...
T Consensus 5 ~~He~af~~iK----~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 5 KNHEKAFQEIK----NYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555553 55555553332222 23333333344444444444555555555554444444333333222
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 95 -------ERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLH 136 (262)
Q Consensus 95 -------e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~ 136 (262)
-..+..++..+++++..++...+.+..+...+.++..+|...
T Consensus 81 y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 81 YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344444555555555544444444444444444444433
No 164
>KOG4643|consensus
Probab=95.77 E-value=2.5 Score=42.56 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 25 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAM 84 (262)
Q Consensus 25 ~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~ 84 (262)
.-.|...++++-..+..+++.+..+...+++..-....++.+++.+..++.+.....+.+
T Consensus 403 ~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 403 HLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345566677888888899999999999999998888999999999999999888766655
No 165
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.66 E-value=0.006 Score=54.61 Aligned_cols=35 Identities=29% Similarity=0.704 Sum_probs=28.1
Q ss_pred cccccHHHHHHHhccCC------------CCccCCCcccCCCCcccc
Q psy16189 224 FHVFCWDCLRTRYETRQ------------RKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 224 gH~fC~~Ci~~~~~~~~------------~~CP~Cr~~~~~~d~~~i 258 (262)
..+.|-+|+-+|+.+|+ -.||+||+.|...||..|
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~v 358 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCYV 358 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeecC
Confidence 34559999999998764 349999999999998653
No 166
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.65 E-value=0.93 Score=36.64 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 24 AFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLT 103 (262)
Q Consensus 24 a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~ 103 (262)
-|++++..|..+...|.|+...+.+|..-..+.-+.....++....+..+...++..+......+..+.+.-........
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888877777777777777777777777777777777666666665555555555555
Q ss_pred HHHHHHHHHHH
Q psy16189 104 NVEKELHLRNQ 114 (262)
Q Consensus 104 ~lekel~~~~~ 114 (262)
.+.+.+..++.
T Consensus 123 k~~~~~~~l~~ 133 (177)
T PF13870_consen 123 KLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 167
>KOG0980|consensus
Probab=95.62 E-value=2.7 Score=41.77 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 68 DILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD 117 (262)
Q Consensus 68 ~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~ 117 (262)
+.++......+.+.++.++.++.|...-..+..+.....+++....+.+.
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~ 462 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID 462 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44445555555555666666666655555555555555555554444443
No 168
>KOG2930|consensus
Probab=95.61 E-value=0.0069 Score=43.77 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=25.4
Q ss_pred cccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 222 KCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 222 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
.|.|.|-..||.+|+++|.+ ||.|+.+-.
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 89999999999999997654 999987653
No 169
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.61 E-value=2.6 Score=41.50 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLK 145 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~ 145 (262)
....++.+++.++..++.......+|......+....+.++.+...++.++..+|-+-..+.+...+|..+.=.++++|.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777766667777777777777777777777776666666666666666666677766
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 146 EAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 146 ~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
.++ ....+.+..+..++++++++.-++..++.+
T Consensus 115 ~Lk----~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 115 VLK----QSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 334556667778888888888777777665
No 170
>KOG0999|consensus
Probab=95.58 E-value=2.1 Score=40.34 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=55.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMH- 85 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~- 85 (262)
+.++.+-|..||+.+..-+++.......- -.+=+.+..|+....|.+..+.-+-|.+..|+..++..+.+..
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qa-------AeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQA-------AEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888887777655332211 1122333445555555555555555555555555554433221
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 86 --------------TAIRKLEEKERYLQTVLTNVEKELHLRNQAMD 117 (262)
Q Consensus 86 --------------~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~ 117 (262)
..+.....++..|..+|-.|+.++..+++.++
T Consensus 79 ~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~ 124 (772)
T KOG0999|consen 79 QHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELT 124 (772)
T ss_pred HHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222455566667777777776665554
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.55 E-value=2.5 Score=41.02 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 41 EKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 41 e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
|+|.+...+..+.....+++..+-.+...+..+.......+..+...|..|
T Consensus 12 Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 12 ERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555555555555555555444444444444
No 172
>KOG3970|consensus
Probab=95.55 E-value=0.014 Score=48.22 Aligned_cols=54 Identities=24% Similarity=0.661 Sum_probs=41.1
Q ss_pred HHHHhccccCccccccccc--ccceeccccccccHHHHHHHhcc-------CCCCccCCCccc
Q psy16189 197 EEIREYKETLTCPSCKVKR--KDAVLTKCFHVFCWDCLRTRYET-------RQRKCPKCNAAF 250 (262)
Q Consensus 197 ~e~~~~~~~~~C~iC~~~~--~~~v~l~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~ 250 (262)
+.+..-.-.-.|..|.... .+.+.+.|.|.|-+.|+..|-.. +...||.|..++
T Consensus 42 qWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 42 QWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred HHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3444444457799999987 45688899999999999998753 235699998765
No 173
>KOG0964|consensus
Probab=95.52 E-value=3.1 Score=41.86 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHE 72 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~ 72 (262)
..-..++|+.+...+...-+.+..+...+...++.+-.+-.++-........+..+++.+..
T Consensus 232 l~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a 293 (1200)
T KOG0964|consen 232 LNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKA 293 (1200)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556665555555544544555545444444444444444444444444444443333
No 174
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.48 E-value=2 Score=39.40 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
.+...+||+...+...+.+.+-..|..+|.+.+..+..+..+++.+......+.+..+.++..+..|..+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777777777776666665555555555555555555555544
No 175
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.44 E-value=0.009 Score=52.40 Aligned_cols=46 Identities=22% Similarity=0.501 Sum_probs=36.1
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhc-cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE-TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 250 (262)
...|.||-....-...+||||..|.-|.-+.-. .....||.|++.-
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 477999999988889999999999999765211 1245699999853
No 176
>KOG4362|consensus
Probab=95.36 E-value=0.0044 Score=59.38 Aligned_cols=51 Identities=29% Similarity=0.679 Sum_probs=41.1
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhcc--CCCCccCCCcccC
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKCNAAFG 251 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~ 251 (262)
.+...+.|+||...+..|+.++|.|.||..|+...+.. +...||.|+....
T Consensus 17 ~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 17 AMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 34556899999999999999999999999999875542 2456999986553
No 177
>KOG4185|consensus
Probab=95.27 E-value=0.1 Score=45.82 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=35.5
Q ss_pred cCcccccccccc------cceecc--------ccccccHHHHHHHhccCCCCccCCCcc
Q psy16189 205 TLTCPSCKVKRK------DAVLTK--------CFHVFCWDCLRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 205 ~~~C~iC~~~~~------~~v~l~--------CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 249 (262)
+..|.+|...+. .|.++. |||+.|..|+...+......||+|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 356888888775 244555 999999999999877666899999874
No 178
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.25 E-value=2.8 Score=40.29 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 64 REEKDILHEQVNALKLQIDAMHTAIRKLEE----------KERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADL 133 (262)
Q Consensus 64 ~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e----------~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l 133 (262)
.+....+..-+..++.++......+.++.. .-+.+..++..+++........+.....-...+.....++
T Consensus 305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~ 384 (560)
T PF06160_consen 305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEI 384 (560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 334455555556666666665555555543 2344555666666666555555543333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 134 KLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 134 ~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
..+++.+..+...+...+..+...-...+..+..+...+...++.+++
T Consensus 385 ~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 385 EEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444444444444455455544444444
No 179
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.23 E-value=2.1 Score=38.02 Aligned_cols=114 Identities=22% Similarity=0.214 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNK----RKAIESAQSAADLKLHLEKYHA 142 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k----~k~~e~~~~~~~l~~~l~~l~~ 142 (262)
++.|...+..|+.........+..+.+.--.+......|..++..+++...... .-+..+...+.....++....+
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~ 225 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVK 225 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666555555555555555555555556666666665543333211 1222223334444455555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 143 QLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTE 180 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~ 180 (262)
.+.+++..+..+...++....+...+..++..+.+.++
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666665555566666666655554433
No 180
>KOG4360|consensus
Probab=95.21 E-value=1.2 Score=41.45 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=83.7
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 3 LGQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 3 ~~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
|-+...+-...++.|+..+..+.-.+++..+.+..++.-.-+.+.+|+++.+.++.+...+.-+++.+..-+...+..-+
T Consensus 192 ~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ 271 (596)
T KOG4360|consen 192 YEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQR 271 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44444555667788999999999999999999999999999999999999999999999998888888876666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 83 AMHTAIRKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 83 ~~~~~i~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
........++++...+-.-+...+.+|..+
T Consensus 272 ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 272 QLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555566666666555555566665543
No 181
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.18 E-value=1.8 Score=37.12 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 153 EKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 153 ~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
-+..++......+.+++.++..++..+++.+..
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455556667777777777777776654
No 182
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.14 E-value=1.2 Score=34.70 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 55 KSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRN 113 (262)
Q Consensus 55 ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~ 113 (262)
-.......+.++.+........+...++.++..|..|++.-..+...+..++-++..+.
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555544444444444444444443
No 183
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.95 E-value=2.5 Score=37.64 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKE 146 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~ 146 (262)
++.|......|+.........+..+.+.--.+......|+.++..++....... .--...+..++.++......++.
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~---~~D~~eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE---SCDQEELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444444444444445555555555554433222100 00111244555555555555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 147 AQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 147 ~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
.+..+.++..++......+..+..+...+...+..+.+.
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554443
No 184
>PHA03096 p28-like protein; Provisional
Probab=94.86 E-value=0.014 Score=50.76 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=31.3
Q ss_pred Cccccccccccc--------ceeccccccccHHHHHHHhccCC--CCccCCCc
Q psy16189 206 LTCPSCKVKRKD--------AVLTKCFHVFCWDCLRTRYETRQ--RKCPKCNA 248 (262)
Q Consensus 206 ~~C~iC~~~~~~--------~v~l~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~ 248 (262)
..|.||++.... .++..|-|.||..|+..|-..+. ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 669999997532 24559999999999999877553 33555554
No 185
>PF15294 Leu_zip: Leucine zipper
Probab=94.82 E-value=2.4 Score=36.73 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhhHHHHHHH----------HHHHHHH-----HHHHHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDA-NFKLMTERIKSNQLHKL----------AREEKDI-----LHEQVNALKLQIDAM 84 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~-~~kl~~e~~ka~q~~~~----------~~~~k~~-----l~~e~~~l~~~~~~~ 84 (262)
+.+.|.+-+.+.-++-.++++.++. +.+.+++.-++.-.-.. +.-.++. +..++..|+..+++.
T Consensus 65 lrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kL 144 (278)
T PF15294_consen 65 LRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKL 144 (278)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555666666554 33333333222111111 2222233 666666777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 85 HTAIRKLEEKERYLQTVLTNVEKELHLRNQ 114 (262)
Q Consensus 85 ~~~i~~l~e~e~~l~~~i~~lekel~~~~~ 114 (262)
+..+..++..-......-..++.+|..++.
T Consensus 145 k~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 145 KERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655544444444555555555544
No 186
>KOG1029|consensus
Probab=94.81 E-value=4.5 Score=39.80 Aligned_cols=120 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Q psy16189 41 EKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTV--------------LTNVE 106 (262)
Q Consensus 41 e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~--------------i~~le 106 (262)
.++.++.-....+.++++....+....+...+++..|+..+..++..+.+|--.-..+..+ .+.|+
T Consensus 455 qls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~ 534 (1118)
T KOG1029|consen 455 QLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELE 534 (1118)
T ss_pred HHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHH
Confidence 3333333344445555666667777777888888888888877776666553222222111 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16189 107 KELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEA 160 (262)
Q Consensus 107 kel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~ 160 (262)
.-.....-.....+.++.++..+...-..+++.+..++.+++..+....-..+.
T Consensus 535 aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~ 588 (1118)
T KOG1029|consen 535 AARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEE 588 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222234555667777777777777777888888777766655544443
No 187
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.80 E-value=0.69 Score=38.46 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 109 LHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 109 l~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
+..++...+..+.|+.+...+..+|..+++.++..+++.+..++.+..+........+.+..++..|+.+|+.+...
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33556666667778888888888888889999999998888888888888777788888888899999999887543
No 188
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.74 E-value=0.017 Score=35.69 Aligned_cols=44 Identities=32% Similarity=0.792 Sum_probs=24.7
Q ss_pred Ccccccccccccceecccc-ccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCF-HVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|-.|-. .+.-.+.|. |-.|-.|+...+. +...||+|+.+++.
T Consensus 3 ~nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWF--ANKGLIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred ccChhhhh--cCCCeeeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 34656653 444577896 7779999999777 56679999998864
No 189
>KOG2932|consensus
Probab=94.73 E-value=0.015 Score=50.37 Aligned_cols=42 Identities=29% Similarity=0.735 Sum_probs=31.3
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
-.|.-|...+... .+++|-|+||.+|....- ...||.|--++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHH
Confidence 4578888877543 678999999999976522 35699996654
No 190
>KOG3579|consensus
Probab=94.73 E-value=0.012 Score=50.34 Aligned_cols=34 Identities=29% Similarity=0.789 Sum_probs=30.4
Q ss_pred cCcccccccccccceeccc----cccccHHHHHHHhcc
Q psy16189 205 TLTCPSCKVKRKDAVLTKC----FHVFCWDCLRTRYET 238 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~C----gH~fC~~Ci~~~~~~ 238 (262)
.+.|.+|++++.+..+..| .|-||+.|....++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 4789999999999999988 699999999887764
No 191
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.61 E-value=2.2 Score=35.18 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=51.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 5 QVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAM 84 (262)
Q Consensus 5 ~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~ 84 (262)
|+-.--..-|.+++..+..-++++...|.-|-..-.-.+.++.+.. -....+-.-......+++.|+..+-++
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e-------~~e~~Lpqll~~h~eEvr~Lr~~LR~~ 80 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYE-------DTEAELPQLLQRHNEEVRVLRERLRKS 80 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556666666666666666666544333333333333332 222333334566666777777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 85 HTAIRKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 85 ~~~i~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
......++..-+.....+..+..++..+
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444444443
No 192
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.57 E-value=1.3 Score=36.48 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 155 TSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 155 ~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
..++.....+...++.|-..|-.+|-.
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555555444433
No 193
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=94.56 E-value=0.053 Score=40.94 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=29.4
Q ss_pred cCcccccccccc-----cceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRK-----DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~-----~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
...|..|..+|. ..+...|+|.+|..|-..........|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 478999998762 23667999999999976532334456888854
No 194
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.53 E-value=1.7 Score=33.74 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKE 108 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~leke 108 (262)
+.+.+..+...|...+.+.+..|+.|+-....+...|..++.+
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444444444
No 195
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=94.50 E-value=0.036 Score=35.52 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=32.2
Q ss_pred Ccccccccccccc--eecccc--ccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 206 LTCPSCKVKRKDA--VLTKCF--HVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 206 ~~C~iC~~~~~~~--v~l~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
-.|..|...+... --.-|. .+||.+|....+. ..||.|+..|..+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccCC
Confidence 4577888765332 233343 5799999999764 47999999887653
No 196
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.041 Score=37.10 Aligned_cols=49 Identities=24% Similarity=0.531 Sum_probs=33.8
Q ss_pred Cccccccccccc----ceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 206 LTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 206 ~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
-.|..|-..+.. ..|-.--|+||.+|...++. -.||.|+..|....+++
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 457667665422 22334458999999998776 36999999988766554
No 197
>KOG0994|consensus
Probab=94.20 E-value=7.8 Score=39.96 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH
Q psy16189 28 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 65 (262)
Q Consensus 28 ~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~ 65 (262)
+-.+...-|..|..-|..+.+...++.+|.+....+.+
T Consensus 1516 L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~ 1553 (1758)
T KOG0994|consen 1516 LTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAER 1553 (1758)
T ss_pred HHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33333334444444455555555555555444444433
No 198
>KOG4739|consensus
Probab=94.06 E-value=0.019 Score=48.09 Aligned_cols=32 Identities=38% Similarity=0.789 Sum_probs=24.6
Q ss_pred ccCcccccccccc-cc-eeccccccccHHHHHHH
Q psy16189 204 ETLTCPSCKVKRK-DA-VLTKCFHVFCWDCLRTR 235 (262)
Q Consensus 204 ~~~~C~iC~~~~~-~~-v~l~CgH~fC~~Ci~~~ 235 (262)
.++-|..|..... .| .++.|+|+||..|....
T Consensus 2 ~~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~ 35 (233)
T KOG4739|consen 2 DFVHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS 35 (233)
T ss_pred ceEEeccccccCCCCceeeeechhhhhhhhcccC
Confidence 4678998887654 22 56799999999998763
No 199
>KOG4360|consensus
Probab=94.02 E-value=5.3 Score=37.37 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 57 NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLH 136 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~ 136 (262)
+|.|..+.++.+-...++..++..+....+...++.|....|.++|..+.+.+..+.-..+.....+......-..+..+
T Consensus 197 q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE 276 (596)
T KOG4360|consen 197 QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAE 276 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 67888888888888888888887777766667777777777777777777777666544444333344444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q psy16189 137 LEKYHAQLKEAQQVVTEKTSSLEA 160 (262)
Q Consensus 137 l~~l~~~~~~~~~~~~~~~~~le~ 160 (262)
+..++++.++.-....+...++..
T Consensus 277 ~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 277 LEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666665555555555555444
No 200
>KOG0946|consensus
Probab=93.97 E-value=7.1 Score=38.65 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFE 26 (262)
Q Consensus 16 ~Eie~~~~a~e 26 (262)
.+.+.+.+-|+
T Consensus 653 e~l~~~~~kyK 663 (970)
T KOG0946|consen 653 EELDDIQQKYK 663 (970)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 201
>KOG3899|consensus
Probab=93.94 E-value=0.021 Score=48.99 Aligned_cols=38 Identities=32% Similarity=0.774 Sum_probs=30.3
Q ss_pred ccccccHHHHHHHhccCC------------CCccCCCcccCCCCcccccc
Q psy16189 223 CFHVFCWDCLRTRYETRQ------------RKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 223 CgH~fC~~Ci~~~~~~~~------------~~CP~Cr~~~~~~d~~~iy~ 260 (262)
|....|.+|+..|+..|. -.||.||+.|...|++-|-+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v~~ 374 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCVDF 374 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEEEe
Confidence 456669999999987653 35999999999999886643
No 202
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.91 E-value=3 Score=37.05 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 163 YKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 163 ~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
.....+...+......++++++.
T Consensus 113 ~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555555556656554
No 203
>PF14992 TMCO5: TMCO5 family
Probab=93.91 E-value=3.9 Score=35.45 Aligned_cols=156 Identities=21% Similarity=0.311 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 25 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTN 104 (262)
Q Consensus 25 ~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~ 104 (262)
...+.+.|+.+++.+.+.++.+..|-.|.++.+-....-.++.......-..+ ..++ ....+|+.....+...+..
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l-~~le---~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDL-QELE---LETAKLEKENEHLSKSVQE 88 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHH-HHHH---hhhHHHhhhhHhhhhhhhh
Confidence 34577889999999999999999999999998654444432222221111122 1111 2224444444444444455
Q ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--
Q psy16189 105 VEKELHL-----------RNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEE-- 171 (262)
Q Consensus 105 lekel~~-----------~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e-- 171 (262)
+.+++.. ..+.+...+.++..+.........++.++.+...+....-.+.-..+.+....+++++++
T Consensus 89 lq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 89 LQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred hhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432 122222333344444444555555555555444443332233333333344444444443
Q ss_pred HHHHHHHHHHHHH
Q psy16189 172 IAQLRRKTERMKK 184 (262)
Q Consensus 172 ~~~l~~~~~~~~~ 184 (262)
+.-|.+++...+.
T Consensus 169 ~~lLe~el~k~q~ 181 (280)
T PF14992_consen 169 MLLLEKELSKYQM 181 (280)
T ss_pred HHHHHHHHHHHhc
Confidence 3345555555444
No 204
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.80 E-value=10 Score=39.97 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHH
Q psy16189 20 VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQL 59 (262)
Q Consensus 20 ~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~ 59 (262)
......++++.+....=..+......+..+..+...++..
T Consensus 618 ~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1201)
T PF12128_consen 618 SAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQD 657 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333333333333333333333333333333333333
No 205
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.78 E-value=5 Score=36.30 Aligned_cols=112 Identities=19% Similarity=0.322 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDAMHT----AIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHA 142 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~~~~----~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~ 142 (262)
...+.......+.++++... .+.++.-+|+.+..+++.+-.+.......+...+.+..+.+..+.++..++..+..
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444433 33445567788888888888888888878877777888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHH
Q psy16189 143 QLKEAQQVVTEKTSSL------EAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~l------e~~~~~~~~~e~e~~~l~~~ 178 (262)
++++.+..+.+..... -..+..+.++..|+..+.-+
T Consensus 309 eLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 309 ELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 8888888888775543 34556666666666554433
No 206
>KOG0995|consensus
Probab=93.77 E-value=6.3 Score=37.40 Aligned_cols=109 Identities=23% Similarity=0.269 Sum_probs=46.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy16189 52 ERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKA-------- 123 (262)
Q Consensus 52 e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~-------- 123 (262)
+.-+.+++...+++.+..|...+...++.+......-......-..+...+...|.|+..++.....+++.+
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~ 332 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGE 332 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 444445555555555555555555444444433333222222223333333333333333333333333222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16189 124 --IESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEA 160 (262)
Q Consensus 124 --~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~ 160 (262)
.....+...+.+.+..+..++..+...+-+...+++.
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1223334445555555555555555555444444433
No 207
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.76 E-value=7.1 Score=37.92 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 24 AFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 24 a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
-+..++..+..+.++...+--.+.++..+..-+...-..++...+.|+.....|+..++
T Consensus 493 ~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnele 551 (786)
T PF05483_consen 493 NCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELE 551 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444454444444433333344444445554444444444
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.73 E-value=7.1 Score=37.82 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 147 AQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 147 ~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
+-.-+..-..++.+.....+.++.++..+..++++.
T Consensus 496 Iv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 496 IVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333344444455555556666666666666666655
No 209
>KOG0298|consensus
Probab=93.71 E-value=0.035 Score=56.48 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=41.4
Q ss_pred HHhccccCcccccccccc-cceeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 199 IREYKETLTCPSCKVKRK-DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 199 ~~~~~~~~~C~iC~~~~~-~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
+.++-....|++|.+... ...+..|||.+|..|...|.. ....||.|...+
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIK 1198 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhh
Confidence 344555678999999887 567889999999999999988 567799998554
No 210
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.66 E-value=4.8 Score=35.63 Aligned_cols=68 Identities=26% Similarity=0.272 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 14 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
...-++.-..--++++.+|++|+.++..-.+...|.-.+..+..-....+.+++..++.++..+....
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456666777788889999999998887777777666666666666666666666655555555444
No 211
>KOG3799|consensus
Probab=93.64 E-value=0.34 Score=36.92 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=15.6
Q ss_pred cCcccccccc-cccceeccccccccHHHH
Q psy16189 205 TLTCPSCKVK-RKDAVLTKCFHVFCWDCL 232 (262)
Q Consensus 205 ~~~C~iC~~~-~~~~v~l~CgH~fC~~Ci 232 (262)
.-+|.||... |.+ .||| .|+.|-
T Consensus 65 datC~IC~KTKFAD----G~GH-~C~YCq 88 (169)
T KOG3799|consen 65 DATCGICHKTKFAD----GCGH-NCSYCQ 88 (169)
T ss_pred Ccchhhhhhccccc----ccCc-ccchhh
Confidence 4789999974 333 6788 466663
No 212
>KOG0964|consensus
Probab=93.59 E-value=9.2 Score=38.70 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=24.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 34 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKL 79 (262)
Q Consensus 34 ~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~ 79 (262)
+.+..+.+..+.+..-..|..+-.-+|..+..+-+.+...+..|+.
T Consensus 325 ~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 325 LALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555555555555556666666666666554444444444443
No 213
>KOG1853|consensus
Probab=93.57 E-value=4.1 Score=34.62 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=52.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 49 LMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAM----HTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAI 124 (262)
Q Consensus 49 l~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~----~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~ 124 (262)
|-+++..+.+....+......|..|+..++...+.+ -..++.|++-...+...-+.+.+-++.+.+.+..+.+-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 444444455554555555555555555554433322 2334444444333333334444444444333332221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 125 ESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKT 179 (262)
Q Consensus 125 e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~ 179 (262)
-..-...++...++..-.+++=+..++.++...++ ...++.++...|+..+
T Consensus 130 ati~sleDfeqrLnqAIErnAfLESELdEke~lle----svqRLkdEardlrqel 180 (333)
T KOG1853|consen 130 ATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLE----SVQRLKDEARDLRQEL 180 (333)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 11111344444444444444444444444444333 2344444444444444
No 214
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.45 E-value=0.04 Score=42.15 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=26.4
Q ss_pred cCccccccccccc---ceecccc------ccccHHHHHHHh
Q psy16189 205 TLTCPSCKVKRKD---AVLTKCF------HVFCWDCLRTRY 236 (262)
Q Consensus 205 ~~~C~iC~~~~~~---~v~l~Cg------H~fC~~Ci~~~~ 236 (262)
...|.||...+.+ .|.++|| |+||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 5789999998865 4667887 779999999983
No 215
>KOG0243|consensus
Probab=93.44 E-value=10 Score=38.75 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLL 36 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~ 36 (262)
..-|+.||+.|..-.-.+++-|.-++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyi 431 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYI 431 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEe
Confidence 45677888888777777776665554
No 216
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=93.40 E-value=0.082 Score=33.55 Aligned_cols=39 Identities=31% Similarity=0.738 Sum_probs=21.7
Q ss_pred ccccccccccc----------eeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 208 CPSCKVKRKDA----------VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 208 C~iC~~~~~~~----------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
|.-|...|..+ ....|++.||.+| +-.+...-..||.|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 56677766553 2238999999999 444444556799994
No 217
>KOG3039|consensus
Probab=93.21 E-value=0.057 Score=45.36 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=31.0
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHh
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY 236 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~ 236 (262)
.++..--|+.|..++.+||+.|=||.||..||-.++
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 345556699999999999999999999999997655
No 218
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.19 E-value=3.9 Score=33.23 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=12.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 52 ERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 52 e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+...+++....+..+.+.+...+..+...+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444433333333333
No 219
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.13 E-value=7.2 Score=36.10 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy16189 18 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHT---AIRKLEEK 94 (262)
Q Consensus 18 ie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~---~i~~l~e~ 94 (262)
+..+.+.|+.+|-.... -++.+.+.+|....-|-....-.+.-.+--|+..++.|+..+.++.- .|.+|++.
T Consensus 296 ~~d~eqs~Eslqpleed-----maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~n 370 (527)
T PF15066_consen 296 TPDTEQSFESLQPLEED-----MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKEN 370 (527)
T ss_pred CCCHHhhhhccCCcHHH-----HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44455666666543211 24556677777666666666667777788888899999988887764 44555543
Q ss_pred HHHHH-----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16189 95 ERYLQ-----TVL--TNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKR 167 (262)
Q Consensus 95 e~~l~-----~~i--~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~ 167 (262)
...|- -.+ ..+++-+..+...+...++.+.+...+...|+.++.+++.-...++.....-..+-.+.....-.
T Consensus 371 iEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclE 450 (527)
T PF15066_consen 371 IEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLE 450 (527)
T ss_pred HHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22221 111 12444455566666666667777776677777777777777776666655544444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 168 LQEEIAQLRRKTERMKK 184 (262)
Q Consensus 168 ~e~e~~~l~~~~~~~~~ 184 (262)
++.-+..-...+++++.
T Consensus 451 mdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 44444444445555544
No 220
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.08 E-value=5.3 Score=34.39 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 150 VVTEKTSSLEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 150 ~~~~~~~~le~~~~~~~~~e~e~~~l~ 176 (262)
.+.++...+..+....++++.++..+.
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 345555556666667788888777765
No 221
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.06 E-value=4.5 Score=33.62 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN----QLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~----q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
.|+..+..-|+++...|..+..=+.+.+..+..++.+.-+.. ..+..+..+++.+...+.++.....
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 456777788888888888888888888888888888765442 2233344455555555555544443
No 222
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.06 E-value=1.7 Score=29.88 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHH
Q psy16189 35 LLQQLREKDDANFKLMTERIKSNQL 59 (262)
Q Consensus 35 ~~~~l~e~e~~~~kl~~e~~ka~q~ 59 (262)
+...|.++|+.+..|+.|.-+....
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKK 27 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566778888888877777655433
No 223
>KOG4445|consensus
Probab=93.05 E-value=0.11 Score=44.83 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=36.1
Q ss_pred cCcccccccccccc---eeccccccccHHHHHHHhcc----------------------CCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYET----------------------RQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~---v~l~CgH~fC~~Ci~~~~~~----------------------~~~~CP~Cr~~~~~ 252 (262)
.-.|.||..-|.+. +.++|.|.|-+.|+.+++.. -...||+||.+++.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35699999988553 45699999999999877642 01239999998864
No 224
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=92.97 E-value=0.011 Score=39.94 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=21.7
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
+.||.|...+...- ||.+|..|-..+. ....||.|+.++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~--~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYK--KEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEE--EEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECccccccce--ecccCCCcccHHH
Confidence 57999998753221 7888999977532 2356999988874
No 225
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.92 E-value=9.7 Score=37.03 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Q psy16189 78 KLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNK------------------RKAIESAQSAADLKLHLEK 139 (262)
Q Consensus 78 ~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k------------------~k~~e~~~~~~~l~~~l~~ 139 (262)
+.+.++....|..|++.+..++..+..+..++......+..-- ..+.-+...+..++.+++.
T Consensus 526 k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEn 605 (786)
T PF05483_consen 526 KKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVEN 605 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666666655555555544333322100 0011111223445555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 140 YHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 140 l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
....+.+++.....+......+..+...++..+..+...++.+
T Consensus 606 k~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~ 648 (786)
T PF05483_consen 606 KNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENL 648 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444444444444444333
No 226
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.92 E-value=9.5 Score=36.96 Aligned_cols=60 Identities=23% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 17 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNA 76 (262)
Q Consensus 17 Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~ 76 (262)
+.+.-.+-.++++.+...+..++.++++.+..+.++.................++.++..
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555444444444444444444444443
No 227
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.84 E-value=5.5 Score=34.04 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 63 AREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKE 108 (262)
Q Consensus 63 ~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~leke 108 (262)
++.....+..+++..+..+..+...+..|.++-+.....-..|+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444555555544444443333334443
No 228
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.84 E-value=3.4 Score=31.66 Aligned_cols=8 Identities=0% Similarity=0.302 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy16189 140 YHAQLKEA 147 (262)
Q Consensus 140 l~~~~~~~ 147 (262)
++.++.++
T Consensus 110 ~~~r~~dL 117 (132)
T PF07926_consen 110 LEQRIEDL 117 (132)
T ss_pred HHHHHHHH
Confidence 33333333
No 229
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.80 E-value=0.031 Score=56.20 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16189 64 REEKDILHEQVNALKLQID 82 (262)
Q Consensus 64 ~~~k~~l~~e~~~l~~~~~ 82 (262)
.+++..+..++..|..+++
T Consensus 151 EK~k~~l~~e~~dL~~~l~ 169 (859)
T PF01576_consen 151 EKEKSQLEAELDDLQAQLD 169 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3334444444444444443
No 230
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.79 E-value=8.2 Score=35.86 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16189 83 AMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159 (262)
Q Consensus 83 ~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le 159 (262)
+.+..|..-++..+.|++++..|.++++...-..+ ......++..+|-++++.+..+...+...+...+..++
T Consensus 334 kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e----~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE----QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 33444444455555666666666666653211111 22233444566666777766666666666655544443
No 231
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=92.74 E-value=0.13 Score=35.37 Aligned_cols=47 Identities=19% Similarity=0.543 Sum_probs=22.0
Q ss_pred cCccccccccccc----ceec---cccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKD----AVLT---KCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|.||.+..-- -++. -|+-..|..|..--.+.+...||.|++++.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3579999997622 2333 678888999998877778888999999884
No 232
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.67 E-value=7.6 Score=35.17 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~ 178 (262)
+...-..++....++..-...+.+....+.........++.++..+..-
T Consensus 233 i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 233 IQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555554443
No 233
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.55 E-value=0.044 Score=45.87 Aligned_cols=55 Identities=25% Similarity=0.544 Sum_probs=31.6
Q ss_pred cccCcccccccccccceecc-cccc------ccHHH--HHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 203 KETLTCPSCKVKRKDAVLTK-CFHV------FCWDC--LRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~-CgH~------fC~~C--i~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
.....||+|...|+...+.. =+.. ||..- +.+.+- ....||.||-.+...|+..+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~l 66 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEKL 66 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCcccccccccC
Confidence 34589999999996653221 1111 12111 222222 23459999999988877643
No 234
>KOG1812|consensus
Probab=92.53 E-value=0.065 Score=48.88 Aligned_cols=48 Identities=31% Similarity=0.752 Sum_probs=32.2
Q ss_pred cCcccccccccccc----eeccccccccHHHHHHHhccC-----CCCccC--CCcccCC
Q psy16189 205 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETR-----QRKCPK--CNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~-----~~~CP~--Cr~~~~~ 252 (262)
...|.||......+ ....|||.||.+|+..++..+ ...||. |...+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 47899999443322 356899999999999888743 345754 4444443
No 235
>KOG0993|consensus
Probab=92.40 E-value=8.5 Score=35.09 Aligned_cols=34 Identities=21% Similarity=0.647 Sum_probs=22.9
Q ss_pred ccccccccccc----ceec--cccccccHHHHHHHhccCC
Q psy16189 207 TCPSCKVKRKD----AVLT--KCFHVFCWDCLRTRYETRQ 240 (262)
Q Consensus 207 ~C~iC~~~~~~----~v~l--~CgH~fC~~Ci~~~~~~~~ 240 (262)
.|..|-..|.. |-.+ .|+.+||..|....+...+
T Consensus 470 ~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp~l~ 509 (542)
T KOG0993|consen 470 QCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVPSLP 509 (542)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhccccc
Confidence 46666655532 3333 3999999999998887654
No 236
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.29 E-value=0.15 Score=40.09 Aligned_cols=19 Identities=42% Similarity=0.880 Sum_probs=16.5
Q ss_pred cCcccccccccccceeccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKC 223 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~C 223 (262)
..+||||++.+-+.|+|-|
T Consensus 2 d~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CccCceeccCCCceEEEEe
Confidence 4789999999999998855
No 237
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=92.29 E-value=10 Score=35.80 Aligned_cols=115 Identities=10% Similarity=0.165 Sum_probs=86.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 3 LGQVSGNEEEALLNEMEVTGQAFEDMQE---QNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKL 79 (262)
Q Consensus 3 ~~~~~~~~~~~l~~Eie~~~~a~e~~q~---q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~ 79 (262)
|+.+.|....+|-.||+.+.+.|-=-.. -...+-..|.+.++.............+.|..+....+.+...+.....
T Consensus 317 ~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~ 396 (570)
T COG4477 317 YLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIED 396 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhh
Confidence 6778899999999999999998832221 1234445666677666666666666688899999888999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 80 QIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD 117 (262)
Q Consensus 80 ~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~ 117 (262)
...+..+.+..|.+-+...+..+..+.+.+...+.-++
T Consensus 397 ~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 397 EQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777777777777777766554443
No 238
>KOG3842|consensus
Probab=92.21 E-value=0.1 Score=45.43 Aligned_cols=46 Identities=24% Similarity=0.592 Sum_probs=30.2
Q ss_pred cCccccccccc-------------------ccceeccccccccHHHHHHHhccC---------CCCccCCCcccC
Q psy16189 205 TLTCPSCKVKR-------------------KDAVLTKCFHVFCWDCLRTRYETR---------QRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~-------------------~~~v~l~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~~~~ 251 (262)
...||+|...- ....+.||||+ |+.=.-.+|..- +..||+|...+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 47799998731 11245699995 666555556531 234999999884
No 239
>KOG0963|consensus
Probab=92.17 E-value=11 Score=36.08 Aligned_cols=58 Identities=24% Similarity=0.198 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy16189 18 MEVTGQAFEDMQEQNSRLLQQ----LREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVN 75 (262)
Q Consensus 18 ie~~~~a~e~~q~q~~~~~~~----l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~ 75 (262)
|..++.+.++.+.+-.-+-.. +.-+-+.+.=+|.+...|++....+.++.+.|..+..
T Consensus 205 i~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 205 ISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333222 3334444444555555555555555544444444433
No 240
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=6.9 Score=37.50 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 155 TSSLEAEAYKTKRLQEEIAQLRRKTERMK 183 (262)
Q Consensus 155 ~~~le~~~~~~~~~e~e~~~l~~~~~~~~ 183 (262)
+..+.....++......++.|++++..+.
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555555554
No 241
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.98 E-value=7.2 Score=33.33 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16189 87 AIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSS 157 (262)
Q Consensus 87 ~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 157 (262)
.+..+.+....+...+..+.+|+..+...+....+.+....+++.++..+++.+.....++...+......
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444333333333333333333334444444444433333333333333333
No 242
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.97 E-value=14 Score=36.55 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 74 VNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD----LNKRKAIESAQSAADLKLHLEKYHAQLKEAQQ 149 (262)
Q Consensus 74 ~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~----~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~ 149 (262)
...|+..++.+.+.|+.+++..+.+...+..-+.++...++.-+ ..+-.+.+.......++-.++..+.+..-+..
T Consensus 450 ~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~i 529 (861)
T PF15254_consen 450 QELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGI 529 (861)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhh
Confidence 33444444455555555555555555555444444443332222 22222223333333344444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q psy16189 150 VVTEKTSSLEAEAYKTKRLQEE 171 (262)
Q Consensus 150 ~~~~~~~~le~~~~~~~~~e~e 171 (262)
.+...++++...+.-.+.++..
T Consensus 530 tlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 530 TLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444334444333
No 243
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.87 E-value=15 Score=36.73 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q psy16189 140 YHAQLKEAQQVVTEKTSSLEA 160 (262)
Q Consensus 140 l~~~~~~~~~~~~~~~~~le~ 160 (262)
++..+..+...+..+..+++.
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333343334444444333
No 244
>KOG0249|consensus
Probab=91.86 E-value=14 Score=36.28 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHHHHHHHhcc
Q psy16189 164 KTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVMMEEIREYK 203 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l~~e~~~~~ 203 (262)
++.++..++..+++.++.+... +......+.|..+++.++
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555666666666555554 444455555555555443
No 245
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.86 E-value=9.8 Score=34.65 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 74 VNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEK 107 (262)
Q Consensus 74 ~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lek 107 (262)
+..+..++......+..++.....+...+..+++
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 246
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.84 E-value=14 Score=36.44 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRN 113 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~ 113 (262)
.-+|..-+-.|+.++..+......|.-+...+..-++.+..|...+.
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555443
No 247
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.82 E-value=21 Score=38.29 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 17 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS--------NQLHKLAREEKDILHEQVNALKLQIDAMHTAI 88 (262)
Q Consensus 17 Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka--------~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i 88 (262)
+|+.+..+|+.|...... +..+.+....+.++...-... -..|.......+.+..++..+...++.....+
T Consensus 221 ~i~~l~e~~~~~~~~~~~-le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDE-LERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEE 299 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666644332 223333333333222211111 22333333344555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
..+++....+...++.++.++..+
T Consensus 300 ~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 300 RELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555444444444445555544443
No 248
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=91.79 E-value=0.049 Score=35.22 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=24.5
Q ss_pred Cccccccccccc----ceeccccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~ 237 (262)
..|++|...|.- .....||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468999887743 34559999999999877554
No 249
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=91.74 E-value=0.038 Score=48.48 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=21.7
Q ss_pred Ccccccccccccceeccc-----cccccHHHHHHHhccCCCCccCCCcc
Q psy16189 206 LTCPSCKVKRKDAVLTKC-----FHVFCWDCLRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~C-----gH~fC~~Ci~~~~~~~~~~CP~Cr~~ 249 (262)
-.||||+..+.-.++..= .|.+|+-|-..|-. ....||+|+..
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 689999998765555433 36669999888765 45579999774
No 250
>KOG0804|consensus
Probab=91.64 E-value=11 Score=34.79 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 63 AREEKDILHEQVNAL 77 (262)
Q Consensus 63 ~~~~k~~l~~e~~~l 77 (262)
+..++..++.....+
T Consensus 373 ~e~~kk~~e~k~~q~ 387 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQL 387 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 251
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.63 E-value=4.2 Score=29.90 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAE 161 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~ 161 (262)
...|..+.......+.+++..+.+....++.+
T Consensus 46 l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555544444443
No 252
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.59 E-value=0.24 Score=30.23 Aligned_cols=39 Identities=28% Similarity=0.707 Sum_probs=20.7
Q ss_pred ccccccccccceec---cccccccHHHHHHHhccCCC-CccCC
Q psy16189 208 CPSCKVKRKDAVLT---KCFHVFCWDCLRTRYETRQR-KCPKC 246 (262)
Q Consensus 208 C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~~~~~-~CP~C 246 (262)
|.+|.+.....+.= .|+-.+-..|+..+|..+.. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56677655443322 47767778999999987654 49998
No 253
>PRK04023 DNA polymerase II large subunit; Validated
Probab=91.59 E-value=0.12 Score=51.75 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=35.4
Q ss_pred cCcccccccccccceeccccc-----cccHHHHHHHhccCCCCccCCCcccCCCCcc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFH-----VFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH-----~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~ 256 (262)
...|+-|........+..||. .||..|-.. .....||.|+.......-.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~---~~~y~CPKCG~El~~~s~~ 679 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE---VEEDECEKCGREPTPYSKR 679 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCc---CCCCcCCCCCCCCCccceE
Confidence 567999999865556668985 489999443 2335699999988765433
No 254
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.59 E-value=9.1 Score=33.71 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHL 111 (262)
Q Consensus 98 l~~~i~~lekel~~ 111 (262)
|..+|..+.++...
T Consensus 82 LlKkl~~l~keKe~ 95 (310)
T PF09755_consen 82 LLKKLQQLKKEKET 95 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 255
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.55 E-value=5.5 Score=31.15 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 44 DANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLT 103 (262)
Q Consensus 44 ~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~ 103 (262)
..+...+.+.+...+. -+...+.+...+..+...++.+...+.+|++....+...+.
T Consensus 34 ~~vin~i~~Ll~~~~r---~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDR---DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433222 23345666666666666666666666555554333333333
No 256
>KOG1940|consensus
Probab=91.55 E-value=0.068 Score=46.12 Aligned_cols=42 Identities=31% Similarity=0.631 Sum_probs=35.1
Q ss_pred Cccccccccc----ccceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 206 LTCPSCKVKR----KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 206 ~~C~iC~~~~----~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
..||+|...+ ..|..++|||..-..|+......+ ..||.|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4499999854 456778999999999999988877 88999988
No 257
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.51 E-value=0.055 Score=54.48 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy16189 92 EEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTS 156 (262)
Q Consensus 92 ~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 156 (262)
++.-+.+...+..++.++.........+.+....+..++.++...++........+......++.
T Consensus 320 EeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk 384 (859)
T PF01576_consen 320 EEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDK 384 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344455555555555555544444444444445555555555555544444444333333333
No 258
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=91.40 E-value=0.05 Score=47.88 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=30.8
Q ss_pred cCcccccccccccceec----ccc--ccccHHHHHHHhccCCCCccCCCcc
Q psy16189 205 TLTCPSCKVKRKDAVLT----KCF--HVFCWDCLRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l----~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~ 249 (262)
.-.||||+....-.++. .=| |.+|+-|-..|-. ...+||+|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 35899999977544332 234 5569999888665 45679999874
No 259
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.39 E-value=11 Score=34.20 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
...+..+......++.+.+.........+......+.++-++++..+.+++.
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444555566666666665554
No 260
>KOG0994|consensus
Probab=91.36 E-value=20 Score=37.21 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy16189 171 EIAQLRRKT 179 (262)
Q Consensus 171 e~~~l~~~~ 179 (262)
++..|..++
T Consensus 1732 eL~~Le~r~ 1740 (1758)
T KOG0994|consen 1732 ELAGLEKRV 1740 (1758)
T ss_pred HhhhHHHHH
Confidence 333333333
No 261
>KOG0827|consensus
Probab=91.31 E-value=0.47 Score=42.62 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=38.4
Q ss_pred Ccccccccccccc----eeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
-.|+||...++.- --+.|||.+-..|+..|+.+ .++||.|+..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 3588988877543 45699999999999999997 67899999887654
No 262
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=91.15 E-value=0.047 Score=29.51 Aligned_cols=23 Identities=30% Similarity=0.853 Sum_probs=13.4
Q ss_pred ccHHHHHHHhccCCCCccCCCccc
Q psy16189 227 FCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 227 fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
+|..|-.. +..+.+.||.|+.++
T Consensus 4 ~Cp~Cg~~-~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGAE-IDPDAKFCPNCGAKL 26 (26)
T ss_pred CCcccCCc-CCcccccChhhCCCC
Confidence 45555442 334566788888764
No 263
>KOG1815|consensus
Probab=91.12 E-value=0.17 Score=47.08 Aligned_cols=53 Identities=26% Similarity=0.490 Sum_probs=38.5
Q ss_pred cccCccccccccccc-ceeccccccccHHHHHHHhccCC-------CCc--cCCCcccCCCCc
Q psy16189 203 KETLTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQ-------RKC--PKCNAAFGANDY 255 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~-~v~l~CgH~fC~~Ci~~~~~~~~-------~~C--P~Cr~~~~~~d~ 255 (262)
.....|.||...+.. .+.+.|||.||..|...++.... .+| +.|.+.++..++
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 445889999998885 67779999999999999886531 235 456665554443
No 264
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.07 E-value=9.5 Score=32.99 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 93 EKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVV 151 (262)
Q Consensus 93 e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~ 151 (262)
+.|+.++..+..+..++...+..+.........+...+..-+.+++..++++..++..-
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555566666666666665555554444444445555556666666666666655433
No 265
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=91.05 E-value=0.047 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.756 Sum_probs=11.9
Q ss_pred cHHHHHHHhccCCCCccCCCccc
Q psy16189 228 CWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 228 C~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
|..|-... ..+...||.|+++|
T Consensus 2 Cp~CG~~~-~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEI-EDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCC-CCcCcchhhhCCcC
Confidence 44443332 23455688887764
No 266
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.01 E-value=11 Score=33.47 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 35 LLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKE 95 (262)
Q Consensus 35 ~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e 95 (262)
+.+.+++....+.++..+....+..+..+..+++.+..+........+++......|....
T Consensus 27 L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 27 LCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQN 87 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666666666666666655555555554444444333
No 267
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=90.92 E-value=0.068 Score=48.02 Aligned_cols=56 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred cCccccccccc-------------------ccceeccccccccHHHHHHHhcc----C----CCCccCCCcccCC-CCcc
Q psy16189 205 TLTCPSCKVKR-------------------KDAVLTKCFHVFCWDCLRTRYET----R----QRKCPKCNAAFGA-NDYH 256 (262)
Q Consensus 205 ~~~C~iC~~~~-------------------~~~v~l~CgH~fC~~Ci~~~~~~----~----~~~CP~Cr~~~~~-~d~~ 256 (262)
...||+|...- ...++-||||+.-.....-|... + +..||+|..++.. ..+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~v 407 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYV 407 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCce
Confidence 58899999742 11256699996544444333321 1 2459999999953 4455
Q ss_pred cccc
Q psy16189 257 RLYL 260 (262)
Q Consensus 257 ~iy~ 260 (262)
+++|
T Consensus 408 rLiF 411 (416)
T PF04710_consen 408 RLIF 411 (416)
T ss_dssp ----
T ss_pred EEEE
Confidence 5554
No 268
>KOG1899|consensus
Probab=90.77 E-value=16 Score=35.19 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 59 LHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLE 138 (262)
Q Consensus 59 ~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~ 138 (262)
....+..+|+.|.-++.-|-.+++.+.+.|.-|+--....+.++..-|..+..---....++.+..++..++.+|+-.+.
T Consensus 112 rLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLklt 191 (861)
T KOG1899|consen 112 RLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLT 191 (861)
T ss_pred HHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHH
Confidence 34455668999999999999999999999987765444444444444443332111112233344444444444444444
Q ss_pred HHH
Q psy16189 139 KYH 141 (262)
Q Consensus 139 ~l~ 141 (262)
.++
T Consensus 192 alE 194 (861)
T KOG1899|consen 192 ALE 194 (861)
T ss_pred HHH
Confidence 443
No 269
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.65 E-value=0.13 Score=38.91 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=16.9
Q ss_pred cccccccccceeccccccccHH
Q psy16189 209 PSCKVKRKDAVLTKCFHVFCWD 230 (262)
Q Consensus 209 ~iC~~~~~~~v~l~CgH~fC~~ 230 (262)
.||...-+.++.-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3677777766666999999975
No 270
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.51 E-value=20 Score=35.76 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=12.9
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHH
Q psy16189 37 QQLREKDDANFKLMTERIKSNQLHKLAR 64 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka~q~~~~~~ 64 (262)
+++.+.+..+..+.++.+.+...+..+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 271
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.27 E-value=15 Score=33.87 Aligned_cols=69 Identities=12% Similarity=0.022 Sum_probs=52.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16189 6 VSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQV 74 (262)
Q Consensus 6 ~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~ 74 (262)
....+...+..+|....+.+..++.+..++-.++...+..+.....+..+.++....+...+..+..+-
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888888888888877777777777777776666666555
No 272
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.25 E-value=0.32 Score=48.19 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 63 AREEKDILHEQVNALKLQID 82 (262)
Q Consensus 63 ~~~~k~~l~~e~~~l~~~~~ 82 (262)
+.+.+.-+..|+..|+.+++
T Consensus 404 Lerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 404 LERQKALATKERDYLRAQLK 423 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 273
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.16 E-value=0.14 Score=27.70 Aligned_cols=12 Identities=33% Similarity=0.957 Sum_probs=6.6
Q ss_pred CCCccCCCcccC
Q psy16189 240 QRKCPKCNAAFG 251 (262)
Q Consensus 240 ~~~CP~Cr~~~~ 251 (262)
...||.||..|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 345666665553
No 274
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.14 E-value=12 Score=32.48 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=5.5
Q ss_pred Ccccccccccc
Q psy16189 206 LTCPSCKVKRK 216 (262)
Q Consensus 206 ~~C~iC~~~~~ 216 (262)
...+||+-++.
T Consensus 174 ~~~~I~~~~lp 184 (302)
T PF10186_consen 174 SEYTICGLPLP 184 (302)
T ss_pred CCeeecCcccC
Confidence 34456655443
No 275
>KOG2462|consensus
Probab=90.08 E-value=0.1 Score=44.66 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=33.9
Q ss_pred cccCcccccccccccc---------eeccccccccHHHHHH-HhccC---------CCCccCCCcccCCC
Q psy16189 203 KETLTCPSCKVKRKDA---------VLTKCFHVFCWDCLRT-RYETR---------QRKCPKCNAAFGAN 253 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~---------v~l~CgH~fC~~Ci~~-~~~~~---------~~~CP~Cr~~~~~~ 253 (262)
...+.|++|...|... -.++|--.||..-+.+ |+-++ ++.||.|++.|..+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 3457899999988542 2346666677766653 54433 45699999999643
No 276
>KOG0612|consensus
Probab=90.03 E-value=27 Score=36.42 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=20.0
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 38 QLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 38 ~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
.+.+.+..+.....++-++......+.++.+.+...+.++...++
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLE 539 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444433333
No 277
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.98 E-value=17 Score=34.19 Aligned_cols=19 Identities=37% Similarity=0.221 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16189 60 HKLAREEKDILHEQVNALK 78 (262)
Q Consensus 60 ~~~~~~~k~~l~~e~~~l~ 78 (262)
+..+..+...+......++
T Consensus 213 l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 213 LEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 278
>KOG0288|consensus
Probab=89.96 E-value=15 Score=33.54 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 34 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTV 101 (262)
Q Consensus 34 ~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~ 101 (262)
.+..+..+.+..+.+|..+++...+++..+..++..+.++-+++++.+....-.+.+|++....+...
T Consensus 3 ~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888899999999999999999999999999999988887777666666666655554433
No 279
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.90 E-value=4.8 Score=27.64 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 126 SAQSAADLKLHLEKYHAQLKEAQQVVTE 153 (262)
Q Consensus 126 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 153 (262)
+...+..|+..+..+...+..+...+..
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333
No 280
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=89.85 E-value=6.9 Score=29.43 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 18 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERY 97 (262)
Q Consensus 18 ie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~ 97 (262)
++.+..-|+.+......+-..+..-+..+..--..+.+|.+....-...+.....++..|..+++.....+.++.+.-..
T Consensus 27 ~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 27 EEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666666666666666667766666666677777777777777777766666666665554
Q ss_pred HHHH
Q psy16189 98 LQTV 101 (262)
Q Consensus 98 l~~~ 101 (262)
+...
T Consensus 107 ~~~Y 110 (126)
T PF13863_consen 107 YKKY 110 (126)
T ss_pred HHHH
Confidence 4433
No 281
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.75 E-value=14 Score=32.77 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 87 AIRKLEEKERYLQTVLTNVE 106 (262)
Q Consensus 87 ~i~~l~e~e~~l~~~i~~le 106 (262)
.+..+.+.+..++.++....
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~ 222 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYS 222 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 282
>KOG1962|consensus
Probab=89.71 E-value=10 Score=31.67 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 168 LQEEIAQLRRKTERM 182 (262)
Q Consensus 168 ~e~e~~~l~~~~~~~ 182 (262)
+..|.+++-.+..++
T Consensus 191 ~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKL 205 (216)
T ss_pred cccHHHHHHHHHHHH
Confidence 333333333333333
No 283
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.69 E-value=13 Score=32.45 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALK 78 (262)
Q Consensus 66 ~k~~l~~e~~~l~ 78 (262)
.++.|+.++.+.+
T Consensus 85 ~kerLEtEiES~r 97 (305)
T PF14915_consen 85 NKERLETEIESYR 97 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 284
>KOG4673|consensus
Probab=89.21 E-value=23 Score=34.61 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 77 LKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 77 l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
++..+.+....+.+.++-....+..+..|+.++...
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344444555555555544444555555555554443
No 285
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.18 E-value=20 Score=33.77 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=3.6
Q ss_pred HHHHHHHHhh
Q psy16189 31 QNSRLLQQLR 40 (262)
Q Consensus 31 q~~~~~~~l~ 40 (262)
+...+-.++.
T Consensus 169 ql~~~~~~L~ 178 (498)
T TIGR03007 169 QIKTYEKKLE 178 (498)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 286
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=89.16 E-value=0.025 Score=38.27 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=17.8
Q ss_pred cCcccccccccccc----eeccccccccHHHHHHHhc
Q psy16189 205 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~ 237 (262)
...|.+|...|.-. ..-.||++||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 47799999998321 3349999999999876553
No 287
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.07 E-value=31 Score=35.92 Aligned_cols=15 Identities=20% Similarity=0.589 Sum_probs=9.6
Q ss_pred HhccccCcccccccc
Q psy16189 200 REYKETLTCPSCKVK 214 (262)
Q Consensus 200 ~~~~~~~~C~iC~~~ 214 (262)
..+...-.||||+..
T Consensus 498 ~~L~~GePCPVCGS~ 512 (1047)
T PRK10246 498 AQLQAGQPCPLCGST 512 (1047)
T ss_pred HhCCCCCCcCCCCcc
Confidence 345566667777764
No 288
>KOG0018|consensus
Probab=88.91 E-value=30 Score=35.53 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 41 EKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHL 111 (262)
Q Consensus 41 e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~ 111 (262)
+++..+.+ ..+.+++.+.+..+......+...+...+.....+...|.+++.....+...-..+++++..
T Consensus 280 ~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 280 EKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred HHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 44556666666666666666666666666666666666666666555555554555554443
No 289
>KOG3564|consensus
Probab=88.89 E-value=6.5 Score=36.60 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 15 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEK 94 (262)
Q Consensus 15 ~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~ 94 (262)
..|+..+...|++..+--.++-.++.+.++.+.|...+..-.+-+.+.++...++...+++.+....++....|..+++.
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 56888888999999999999999999999999999988888899999999888888888888888888877777777764
Q ss_pred HH
Q psy16189 95 ER 96 (262)
Q Consensus 95 e~ 96 (262)
-+
T Consensus 107 l~ 108 (604)
T KOG3564|consen 107 LK 108 (604)
T ss_pred Hh
Confidence 33
No 290
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.86 E-value=4.9 Score=29.72 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~ 147 (262)
.+-..+..++.++..+-..+..++..+.++..+...|+.+.+.++..+.+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666655555555444
No 291
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=88.83 E-value=0.041 Score=40.20 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=16.2
Q ss_pred Cccccccccc--ccceeccc--cccc--cHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKR--KDAVLTKC--FHVF--CWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~--~~~v~l~C--gH~f--C~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
-.|++|...+ .++....| ||+| |.-=.-.......+.||.|+..+..
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 5699999854 55555656 8888 5544444444455779999987744
No 292
>PF14353 CpXC: CpXC protein
Probab=88.80 E-value=0.44 Score=36.30 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=27.0
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccC--CCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 252 (262)
++||.|+..|.-.+-+.-.-..=..=....+... ...||.||..|..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 6899999887654433222222223334433322 2459999998865
No 293
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.78 E-value=17 Score=32.34 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy16189 172 IAQLRRKTERMK 183 (262)
Q Consensus 172 ~~~l~~~~~~~~ 183 (262)
+..|+.++..++
T Consensus 273 i~~Lk~~~~~Le 284 (312)
T smart00787 273 IEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 294
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=88.76 E-value=0.44 Score=37.57 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=34.4
Q ss_pred ccCcccccccccccceecccccc-----ccHHHHHHHhccC-CCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHV-----FCWDCLRTRYETR-QRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~-----fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 252 (262)
....|-||..... +..-||.-. .-.+|+..|+..+ ...||.|+.+|..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3467999998754 334566421 2589999999864 4569999999854
No 295
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=88.68 E-value=0.19 Score=37.46 Aligned_cols=10 Identities=50% Similarity=1.414 Sum_probs=5.0
Q ss_pred CCCCccCCCc
Q psy16189 239 RQRKCPKCNA 248 (262)
Q Consensus 239 ~~~~CP~Cr~ 248 (262)
+++.||.|+.
T Consensus 59 k~R~CP~C~~ 68 (111)
T PF14319_consen 59 KNRHCPSCQA 68 (111)
T ss_pred cCcCCCCCCC
Confidence 3345555554
No 296
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=88.45 E-value=0.16 Score=44.81 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=30.5
Q ss_pred cCccccccccccccee-c--ccc--ccccHHHHHHHhccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRKDAVL-T--KCF--HVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~-l--~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
.-.||||+..+.-.++ + .=| |.+|+-|-..|-- ....||.|+.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 4789999998754433 2 234 4459999888665 4567999986
No 297
>KOG0982|consensus
Probab=88.07 E-value=21 Score=32.78 Aligned_cols=173 Identities=21% Similarity=0.179 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE----KDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID--A 83 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e----~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~--~ 83 (262)
.++.|..=|+.-.--|+.--.-..+.|+++.+ -.|.-.+++.|.......|-.+.+... +.+..+-.+-.+ .
T Consensus 205 tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~r--eqElraeE~l~Ee~r 282 (502)
T KOG0982|consen 205 TEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRR--EQELRAEESLSEEER 282 (502)
T ss_pred hhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHH
Confidence 34444444555544555555555566666654 455667777777766666655543221 111111111111 1
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16189 84 MHTAIRKLEEKERY-----LQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSL 158 (262)
Q Consensus 84 ~~~~i~~l~e~e~~-----l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l 158 (262)
-...|--..++++. ++.++..|+.+...++..+..++--..++.......-..++.+..++...+.........|
T Consensus 283 rhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 283 RHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222232222 3445556666666655555544444444443333344445555555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 159 EAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 159 e~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
-.........++-+..+++.+++++-
T Consensus 363 rrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 363 RRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566777777776654
No 298
>KOG2979|consensus
Probab=88.04 E-value=16 Score=31.27 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=36.1
Q ss_pred cCccccccccccccee-ccccccccHHHHHHHhcc-CCCCccCCCcc
Q psy16189 205 TLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYET-RQRKCPKCNAA 249 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~-l~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~ 249 (262)
.++||+-..++.+|++ ..|||+|=.+-+...+.. ....||+=+.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 5789999999999965 599999999999987753 24569986665
No 299
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.03 E-value=23 Score=33.07 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 81 IDAMHTAIRKLEEKERYLQTVLTNVEKELHL 111 (262)
Q Consensus 81 ~~~~~~~i~~l~e~e~~l~~~i~~lekel~~ 111 (262)
..+....+..++.+...+...+..|..++..
T Consensus 311 ~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~ 341 (622)
T COG5185 311 SNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3333333333333333344444444443333
No 300
>KOG1428|consensus
Probab=87.86 E-value=0.34 Score=50.37 Aligned_cols=47 Identities=28% Similarity=0.610 Sum_probs=32.5
Q ss_pred cCccccccccc---ccceeccccccccHHHHHHHhccC---C------CCccCCCcccC
Q psy16189 205 TLTCPSCKVKR---KDAVLTKCFHVFCWDCLRTRYETR---Q------RKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~---~~~v~l~CgH~fC~~Ci~~~~~~~---~------~~CP~Cr~~~~ 251 (262)
+.-|-||...- ...+.+.|||+|-..|....+..| + ..||.|..++.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 34466676543 234678999999999987766543 2 23999988774
No 301
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=87.77 E-value=18 Score=31.69 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHHHHHHHhccccCccc
Q psy16189 164 KTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVMMEEIREYKETLTCP 209 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l~~e~~~~~~~~~C~ 209 (262)
..+-++-|++.|+.++.-.... .......+.+.--+..++..+..+
T Consensus 116 ERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~~ 162 (351)
T PF07058_consen 116 ERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKGS 162 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3456677777777776555443 112222344444555555555544
No 302
>KOG3268|consensus
Probab=87.70 E-value=0.34 Score=38.74 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=25.3
Q ss_pred ccccccccHHHHHHHhcc----CC------CCccCCCcccCC
Q psy16189 221 TKCFHVFCWDCLRTRYET----RQ------RKCPKCNAAFGA 252 (262)
Q Consensus 221 l~CgH~fC~~Ci~~~~~~----~~------~~CP~Cr~~~~~ 252 (262)
..||..|-.-|+..|++. |+ ..||+|..|+..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 489999999999999873 22 239999888754
No 303
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.53 E-value=6.9 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 70 LHEQVNALKLQIDA 83 (262)
Q Consensus 70 l~~e~~~l~~~~~~ 83 (262)
|+.++.+|+..++.
T Consensus 3 Lea~~~~Lr~rLd~ 16 (69)
T PF14197_consen 3 LEAEIATLRNRLDS 16 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554444
No 304
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=87.42 E-value=0.31 Score=34.77 Aligned_cols=36 Identities=22% Similarity=0.520 Sum_probs=27.7
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
-.|.+|......+ ||.||..|... .-.|+.|+..+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc-----cCcccccCCeec
Confidence 4688888755544 89999999664 346999999884
No 305
>KOG1952|consensus
Probab=87.27 E-value=0.33 Score=47.73 Aligned_cols=46 Identities=24% Similarity=0.696 Sum_probs=36.2
Q ss_pred cCcccccccccccc----eeccccccccHHHHHHHhcc------CCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYET------RQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~ 250 (262)
.+.|.||.+.++.. ....|+|+|-..||..|-.+ +.+.||.|....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 47899999988653 23489999999999999875 346799998533
No 306
>PHA02862 5L protein; Provisional
Probab=87.07 E-value=0.58 Score=36.25 Aligned_cols=46 Identities=15% Similarity=0.366 Sum_probs=33.2
Q ss_pred Ccccccccccccceeccccc-----cccHHHHHHHhccC-CCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFH-----VFCWDCLRTRYETR-QRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH-----~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 252 (262)
..|-||...-.+. .-||+- ..-.+|+..|+... ...||.|+.++..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4688999876444 456642 23689999999754 4569999999853
No 307
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.85 E-value=0.26 Score=48.72 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 165 TKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 165 ~~~~e~e~~~l~~~~~~~ 182 (262)
..+++.+++.++++++.+
T Consensus 310 ~~klE~~ve~YKkKLed~ 327 (713)
T PF05622_consen 310 ADKLENEVEKYKKKLEDL 327 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 308
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.84 E-value=7.6 Score=28.87 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~ 147 (262)
.+-..+..++.++..+-..+..++..+.++..+...|+.+.+.++..+.++
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666666666666555555543
No 309
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.57 E-value=12 Score=28.47 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELH 110 (262)
Q Consensus 98 l~~~i~~lekel~ 110 (262)
+..+|+.+...+.
T Consensus 66 LsqRId~vd~klD 78 (126)
T PF07889_consen 66 LSQRIDRVDDKLD 78 (126)
T ss_pred HHHHHHHHHhhHH
Confidence 3344444444333
No 310
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=86.49 E-value=0.49 Score=27.03 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.4
Q ss_pred CCCCccCCCcc
Q psy16189 239 RQRKCPKCNAA 249 (262)
Q Consensus 239 ~~~~CP~Cr~~ 249 (262)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45679999874
No 311
>KOG0979|consensus
Probab=86.46 E-value=41 Score=34.38 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 57 NQLHKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
+..|.+.+..++.+..+++.+......
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~p 273 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKP 273 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444444444444444444443333
No 312
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=86.42 E-value=8.9 Score=26.69 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=36.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 6 VSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 6 ~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
.-++|.+++..|.-.....-++++....+-++.+......+..|...-.+.+ ..-+.|+..|+.+++.
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----------~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----------QQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 3344444444444444447777776655555555555555555544444433 3345666666666543
No 313
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.41 E-value=51 Score=35.42 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 54 IKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLT 103 (262)
Q Consensus 54 ~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~ 103 (262)
..+...+..+..+...+..++...+.........+..++.....+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~ 321 (1353)
T TIGR02680 272 RSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLE 321 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555444444444433
No 314
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.38 E-value=12 Score=28.23 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=12.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 50 MTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 50 ~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
-.|+.-...-+..+...++.+..|+-.|-..+
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444333
No 315
>KOG1812|consensus
Probab=86.37 E-value=0.74 Score=42.06 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=29.0
Q ss_pred cccCccccccccccc-----ceeccccccccHHHHHHHhccCCCCcc
Q psy16189 203 KETLTCPSCKVKRKD-----AVLTKCFHVFCWDCLRTRYETRQRKCP 244 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~-----~v~l~CgH~fC~~Ci~~~~~~~~~~CP 244 (262)
..|..||.|...+.- .++=.|||-||+.|...|.. +...|+
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~ 349 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECY 349 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCcccc
Confidence 678999999987521 23335999999999988665 334453
No 316
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=86.21 E-value=0.33 Score=49.88 Aligned_cols=50 Identities=22% Similarity=0.531 Sum_probs=34.4
Q ss_pred cCcccccccccccceecccccc-----ccHHHHHHHhcc--CCCCccCCCcccCCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHV-----FCWDCLRTRYET--RQRKCPKCNAAFGAND 254 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~-----fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~d 254 (262)
.+.||-|........+..||+. +|..|-...... ....||.|+.++....
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 3789999986555566789855 399997653221 1346999999886543
No 317
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.10 E-value=22 Score=30.84 Aligned_cols=74 Identities=8% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16189 83 AMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEA 160 (262)
Q Consensus 83 ~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~ 160 (262)
++++...+|.+++. .|..|..||..++++--..+=.-+|.+=.+.+.+.++.+++.-++..+..+.++++-+.+
T Consensus 76 kLkes~~~l~dRet----EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 76 KLKESENRLHDRET----EIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 33344444444332 355666666666554332222223333335555555555555555555555555554443
No 318
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.01 E-value=15 Score=28.74 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQLRRKT 179 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~ 179 (262)
.+++.+.++++|+.++
T Consensus 134 e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 134 ELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555666665543
No 319
>KOG1850|consensus
Probab=85.92 E-value=24 Score=31.19 Aligned_cols=47 Identities=26% Similarity=0.199 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH
Q psy16189 19 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 65 (262)
Q Consensus 19 e~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~ 65 (262)
++=+-|.+.+|.....--..+.+.+..+.+|..+.++..+++..+-.
T Consensus 105 erRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~e 151 (391)
T KOG1850|consen 105 ERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGE 151 (391)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444455555555555555555555444444433
No 320
>KOG0612|consensus
Probab=85.91 E-value=48 Score=34.65 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy16189 102 LTNVEKELH 110 (262)
Q Consensus 102 i~~lekel~ 110 (262)
+..+.+++.
T Consensus 541 v~~~rk~le 549 (1317)
T KOG0612|consen 541 VNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHH
Confidence 333444444
No 321
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.16 E-value=8.8 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 102 LTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHA 142 (262)
Q Consensus 102 i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~ 142 (262)
|..||..+.-....++.+..-+.+..+.+..+..++..+..
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333333333333333333333333
No 322
>KOG0976|consensus
Probab=85.02 E-value=44 Score=33.43 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy16189 102 LTNVEKE 108 (262)
Q Consensus 102 i~~leke 108 (262)
.+.|||+
T Consensus 353 ~~eLEKk 359 (1265)
T KOG0976|consen 353 LNELEKK 359 (1265)
T ss_pred HHHHHHH
Confidence 3333333
No 323
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.62 E-value=25 Score=30.32 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 64 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~ 64 (262)
....+-.+...+..-.+.|+.+...+..++.+.+..+.++.++.-+.++....+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555666666666555555544444433
No 324
>KOG2113|consensus
Probab=84.43 E-value=0.66 Score=40.50 Aligned_cols=46 Identities=7% Similarity=-0.029 Sum_probs=37.2
Q ss_pred HhccccCcccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCc
Q psy16189 200 REYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 200 ~~~~~~~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
+.+...+.|.+|....-..+..+|||. ||.+|... +-...||+|..
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~---s~~~~~~~c~~ 384 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA---SASPTSSTCDH 384 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhc---ccCCccccccc
Confidence 345667889999999988889999986 59999884 34578999976
No 325
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.43 E-value=43 Score=32.84 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=90.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 5 QVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD---ANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 5 ~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~---~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
+....+.+.|...+-.++.+++.--....++-.=|.+..- ...-...|+-....+...+.+++++|...+..|+--+
T Consensus 193 a~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 193 AEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665555544444444444433321 2222345566666777777778887777777777666
Q ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 82 DAMHTAIRKLEEK---------------ERYLQTVLTNVEKELHLRNQAMD----LNKRKAIESAQSAADLKLHLEKYHA 142 (262)
Q Consensus 82 ~~~~~~i~~l~e~---------------e~~l~~~i~~lekel~~~~~~~~----~~k~k~~e~~~~~~~l~~~l~~l~~ 142 (262)
.....++.-.++. .+.+...+..|...+-.+--.+. .+...+..+...+..|..++..-..
T Consensus 273 qSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~q 352 (739)
T PF07111_consen 273 QSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQ 352 (739)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444322211 22233344444444332211111 2223333444445555555555455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 143 QLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
+-.-+...+.++..+++-++-..+.+..++.........
T Consensus 353 EqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~ 391 (739)
T PF07111_consen 353 EQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRR 391 (739)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666666666655444333
No 326
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=84.35 E-value=0.55 Score=30.03 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=25.4
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhcc-CCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET-RQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 252 (262)
.+.||.|...+.. ..++.-|....... ....||+|...++.
T Consensus 2 ~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 4789999985442 22444555544432 34569999886653
No 327
>PF15616 TerY-C: TerY-C metal binding domain
Probab=84.14 E-value=0.57 Score=35.91 Aligned_cols=44 Identities=27% Similarity=0.503 Sum_probs=32.4
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
+...-.||-|...+--.+. .||++||.+= .....||-|+.....
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g------~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDG------EGEVTCPWCGNEGSF 117 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCC------CCCEECCCCCCeeee
Confidence 4555789999987665555 8999999643 345689999987643
No 328
>PLN02939 transferase, transferring glycosyl groups
Probab=84.12 E-value=54 Score=33.72 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHH---------------------HHHHHHHHHHHHHHH
Q psy16189 15 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ---------------------LHKLAREEKDILHEQ 73 (262)
Q Consensus 15 ~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q---------------------~~~~~~~~k~~l~~e 73 (262)
+.+++.+-.-.+.+|....-|--.++|-+..+.=...+++.+.- ....+-.+.+.+..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 34566666666666666666666666644333222222222210 111234456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 74 VNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 74 ~~~l~~~~~~~~~~i~~l~e 93 (262)
+-.|+..+...+..+....+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~ 254 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEVAE 254 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 77777666666655554444
No 329
>KOG0825|consensus
Probab=84.06 E-value=0.41 Score=46.66 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=31.7
Q ss_pred cCcccccccccccc----eec---cccccccHHHHHHHhccC-----CCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDA----VLT---KCFHVFCWDCLRTRYETR-----QRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l---~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 251 (262)
..+|.+|...+.++ -+. .|+|.||..||..|...- +-.||+|..-|.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 46677777766552 233 599999999999987531 223788876553
No 330
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=83.81 E-value=1.2 Score=25.96 Aligned_cols=26 Identities=23% Similarity=0.822 Sum_probs=14.9
Q ss_pred ccHHHHHHHhccCC-------CCccCCCcccCC
Q psy16189 227 FCWDCLRTRYETRQ-------RKCPKCNAAFGA 252 (262)
Q Consensus 227 fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~ 252 (262)
+|..|......... ..||.||..+..
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~i 33 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYSI 33 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEEE
Confidence 47888887654332 239999887753
No 331
>KOG0243|consensus
Probab=83.74 E-value=57 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH
Q psy16189 29 QEQNSRLLQQLREKDDANFKLMTE 52 (262)
Q Consensus 29 q~q~~~~~~~l~e~e~~~~kl~~e 52 (262)
-....+|-.+|...++.+-..+++
T Consensus 410 ~~EIerLK~dl~AaReKnGvyise 433 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREKNGVYISE 433 (1041)
T ss_pred HHHHHHHHHHHHHhHhhCceEech
Confidence 333344445555555544444433
No 332
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.69 E-value=11 Score=25.46 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
+.+....+++.+.++.-+++-.+..+..|..|+.-+-.....+..+...|..++..|+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666777777777766664444444545555555555555543
No 333
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.62 E-value=24 Score=29.20 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKE 95 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e 95 (262)
.||--+.+-..+.|.....+...|..+...+..+.+.....+. ....+......-...++.....+.+....-
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~-------~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKES-------QIQELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 4666677777777765555555544443333333222222222 222222222222223333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHH--------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16189 96 RYLQTVLTNVEKELHLRNQAMDLN---KRKA--------IES-----AQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159 (262)
Q Consensus 96 ~~l~~~i~~lekel~~~~~~~~~~---k~k~--------~e~-----~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le 159 (262)
..+..++..++.++..++..+... .... ... ......+..+++.+...+.............++
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445666777777777666555432 0000 000 012444556666666666655555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 160 AEAYKTKRLQEEIAQLRR 177 (262)
Q Consensus 160 ~~~~~~~~~e~e~~~l~~ 177 (262)
.++.....-.+.+-.+.+
T Consensus 163 ~ER~~W~eEKekVi~YQk 180 (202)
T PF06818_consen 163 QERRTWQEEKEKVIRYQK 180 (202)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 554444333333333333
No 334
>KOG0963|consensus
Probab=83.27 E-value=45 Score=32.18 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16189 158 LEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 158 le~~~~~~~~~e~e~~~l~~~ 178 (262)
++.....+..++.+++.++..
T Consensus 244 Le~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444433333
No 335
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=46 Score=32.18 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 149 QVVTEKTSSLEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 149 ~~~~~~~~~le~~~~~~~~~e~e~~~l~ 176 (262)
..+..+...|.........|+..+..++
T Consensus 481 ~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 481 RRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555544
No 336
>KOG0979|consensus
Probab=83.18 E-value=58 Score=33.36 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHH
Q psy16189 27 DMQEQNSRLLQQLREKDDANFKL 49 (262)
Q Consensus 27 ~~q~q~~~~~~~l~e~e~~~~kl 49 (262)
+++.-..++...+.....++.+|
T Consensus 185 ~lr~~e~~Le~~~~~~~~~l~~L 207 (1072)
T KOG0979|consen 185 DLREDEKSLEDKLTTKTEKLNRL 207 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333444333333333333
No 337
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.17 E-value=0.57 Score=45.42 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=16.1
Q ss_pred cHHHHHHHhccC-------CCCccCCCccc
Q psy16189 228 CWDCLRTRYETR-------QRKCPKCNAAF 250 (262)
Q Consensus 228 C~~Ci~~~~~~~-------~~~CP~Cr~~~ 250 (262)
|..|-..+-..- +.-||.|+..+
T Consensus 154 C~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 154 CPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CHHHHHHhcCccccccccccccCcccCCCe
Confidence 999988755432 23399998755
No 338
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.14 E-value=0.66 Score=34.51 Aligned_cols=41 Identities=29% Similarity=0.571 Sum_probs=29.8
Q ss_pred Ccccccccccccc--------------eeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 206 LTCPSCKVKRKDA--------------VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 206 ~~C~iC~~~~~~~--------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
..|.-|...|..+ ....|++.||.+|= ..+...-..||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD-VFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccc-hhhhhhccCCcCCC
Confidence 4699999988653 14589999999993 33333456799996
No 339
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.14 E-value=1.4 Score=43.73 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKL 79 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~ 79 (262)
.+.+.+++-.+..+..+++.....+...+.+....+..+...+.+.......+.++.+.|...+.+.-.
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555555555555555555555555555555555555555555555566666666666665443
No 340
>PF12773 DZR: Double zinc ribbon
Probab=82.74 E-value=1 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=16.2
Q ss_pred ccccHHHHHHHh--ccCCCCccCCCcccCC
Q psy16189 225 HVFCWDCLRTRY--ETRQRKCPKCNAAFGA 252 (262)
Q Consensus 225 H~fC~~Ci~~~~--~~~~~~CP~Cr~~~~~ 252 (262)
-.||..|-.... ......||.|+..+..
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 445666655544 3334568888886543
No 341
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=82.52 E-value=16 Score=26.46 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK---DILHEQVNALKLQIDAMHTA 87 (262)
Q Consensus 11 ~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k---~~l~~e~~~l~~~~~~~~~~ 87 (262)
...+-+|++....-|.=+...|...-..+.++.+....+.......+++|..+..-. +.++.++..|...+......
T Consensus 9 ~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 9 SKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEY 88 (99)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888899999999999999999999988888888877777776665433 33333555555544444444
Q ss_pred HHHHH
Q psy16189 88 IRKLE 92 (262)
Q Consensus 88 i~~l~ 92 (262)
..+|+
T Consensus 89 sk~LE 93 (99)
T PF10046_consen 89 SKELE 93 (99)
T ss_pred HHHHH
Confidence 43333
No 342
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=82.50 E-value=0.43 Score=30.45 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.3
Q ss_pred ccCccccccccc
Q psy16189 204 ETLTCPSCKVKR 215 (262)
Q Consensus 204 ~~~~C~iC~~~~ 215 (262)
.|+.||+|+..-
T Consensus 3 ~Wi~CP~CgnKT 14 (55)
T PF14205_consen 3 EWILCPICGNKT 14 (55)
T ss_pred eEEECCCCCCcc
Confidence 478999999643
No 343
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.26 E-value=0.83 Score=35.85 Aligned_cols=26 Identities=23% Similarity=0.677 Sum_probs=21.0
Q ss_pred cccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 224 FHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 224 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+-||..|-...+. .||.|+.++...
T Consensus 27 ~~~fC~kCG~~tI~----~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTIT----SCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHH----HCcCCCCCCCCc
Confidence 46799999888765 699999999654
No 345
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.20 E-value=31 Score=29.44 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQID 82 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~ 82 (262)
++..+..+++.+..+++
T Consensus 50 e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 346
>PLN02189 cellulose synthase
Probab=82.16 E-value=0.95 Score=45.92 Aligned_cols=46 Identities=17% Similarity=0.505 Sum_probs=35.1
Q ss_pred Cccccccccccc----c---eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKD----A---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~----~---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+.... - ++--||-..|..|..---+.+...||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 479999997532 1 333678888999997656667788999999886
No 347
>KOG2129|consensus
Probab=82.10 E-value=41 Score=30.89 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQAMD-----------------LNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~~~~-----------------~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le 159 (262)
.|.+++..|+.+.+-+...++ .+-....-....+..|+.+++.++..+...+....+...++.
T Consensus 205 ~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~ 284 (552)
T KOG2129|consen 205 SLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYR 284 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888877776655543 011112223334677788888888888877777766666654
Q ss_pred HH
Q psy16189 160 AE 161 (262)
Q Consensus 160 ~~ 161 (262)
.+
T Consensus 285 ~E 286 (552)
T KOG2129|consen 285 AE 286 (552)
T ss_pred HH
Confidence 43
No 348
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.95 E-value=37 Score=30.21 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHH
Q psy16189 101 VLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQ-------VVTEKTSSLEAEAYKTKRLQEEIA 173 (262)
Q Consensus 101 ~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~-------~~~~~~~~le~~~~~~~~~e~e~~ 173 (262)
+++.+..++..+..++...-....++..+.+.++-....+..++.-+-. .+..+..+.--...++..+++|..
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333334444444444444444444432211 122222222334456666677766
Q ss_pred HHHHHHHHHHHH
Q psy16189 174 QLRRKTERMKKI 185 (262)
Q Consensus 174 ~l~~~~~~~~~~ 185 (262)
.++..+.+.+..
T Consensus 214 l~k~~i~KYK~~ 225 (319)
T PF09789_consen 214 LLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHH
Confidence 666666665553
No 349
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.75 E-value=20 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q psy16189 133 LKLHLEKYHAQLKEAQQVVTEKTS 156 (262)
Q Consensus 133 l~~~l~~l~~~~~~~~~~~~~~~~ 156 (262)
++.++..++.+...+-..+.++..
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Confidence 333333333333333333333333
No 350
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.71 E-value=12 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 119 NKRKAIESAQSAADLKLHLEKYHAQLKE 146 (262)
Q Consensus 119 ~k~k~~e~~~~~~~l~~~l~~l~~~~~~ 146 (262)
...++.+....+.+|..++..++.++.+
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 351
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.71 E-value=19 Score=26.65 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~~~ 182 (262)
.-.++.-|...|+..+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544
No 352
>KOG4460|consensus
Probab=81.63 E-value=50 Score=31.54 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy16189 57 NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS------- 129 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~------- 129 (262)
.|+......-+.++...+..|+.+.+++.+.++.+.+..+.+.+..+.|++.+.......+.+.++...+.+.
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Confidence 5555556666788888889999999999999998888888888888888888877766666555555554442
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 130 ----AADLKLHLEKYHAQLKEAQQVVT 152 (262)
Q Consensus 130 ----~~~l~~~l~~l~~~~~~~~~~~~ 152 (262)
-.+++.++..+..++..+...+.
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iE 679 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIE 679 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 23444555444444444444333
No 353
>PLN02436 cellulose synthase A
Probab=81.60 E-value=1 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.566 Sum_probs=35.3
Q ss_pred Ccccccccccccc-------eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+..-.. ++--||-..|..|..---+.+...||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4799999976221 334678889999997666667788999999886
No 354
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=81.47 E-value=0.49 Score=33.89 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=26.6
Q ss_pred cccccccccccceeccccc-------cccHHHHHHHhcc--C-CCCccCCCcccCC
Q psy16189 207 TCPSCKVKRKDAVLTKCFH-------VFCWDCLRTRYET--R-QRKCPKCNAAFGA 252 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l~CgH-------~fC~~Ci~~~~~~--~-~~~CP~Cr~~~~~ 252 (262)
-|.-|...+....+.|-|+ +.|.-|....... + ...||.|+.||..
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp 92 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNP 92 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCc
Confidence 3555555554444444443 3577776653322 1 2459999999953
No 355
>KOG1937|consensus
Probab=81.41 E-value=46 Score=30.94 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS----NQLHKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka----~q~~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
+..-+.+|+...+-+|+.++.-....-.+.++++ ...++....+.+ ..+...++.........+-.|..+.+.
T Consensus 242 eneel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 242 ENEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888887777777777777 666666665555 345555555555555555555555543
No 356
>KOG4593|consensus
Probab=81.23 E-value=58 Score=31.97 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
...-+.+|+..|+.++.++.+.
T Consensus 276 tv~~LqeE~e~Lqskl~~~~~l 297 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLEKL 297 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888777665
No 357
>KOG2068|consensus
Probab=81.20 E-value=1.3 Score=39.00 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=34.4
Q ss_pred Cccccccccccc--cee--ccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKD--AVL--TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~--~v~--l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
-.||+|...... .-. .||||..|..|...... +...||.||.+...+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccC
Confidence 569999986522 222 37899899999988665 566799999877543
No 358
>KOG1962|consensus
Probab=81.18 E-value=31 Score=28.84 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELH 110 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~ 110 (262)
++.+.++...|+..+++-.......+..-..+.++.+.+..|..
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 34444444444444433333333333333333344444333333
No 359
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.16 E-value=37 Score=29.74 Aligned_cols=47 Identities=17% Similarity=0.031 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 33 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKL 79 (262)
Q Consensus 33 ~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~ 79 (262)
..+-.+|..+-..+..|.+..-+-+|....+..+.++...-+.+.-.
T Consensus 59 ~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~ 105 (305)
T PF14915_consen 59 FQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ 105 (305)
T ss_pred HHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555566666666666666666666665555544444433
No 360
>PF13166 AAA_13: AAA domain
Probab=81.07 E-value=60 Score=32.04 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHHHHHHHhc
Q psy16189 155 TSSLEAEAYKTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVMMEEIREY 202 (262)
Q Consensus 155 ~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l~~e~~~~ 202 (262)
...+.........+...+..+..++..+... .......+.+...+..+
T Consensus 423 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 423 EKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3333344444444444455555444444433 11233344555566555
No 361
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.01 E-value=20 Score=26.43 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16189 70 LHEQVNALKLQIDAMH 85 (262)
Q Consensus 70 l~~e~~~l~~~~~~~~ 85 (262)
+...+..|...++..+
T Consensus 14 l~n~La~Le~slE~~K 29 (107)
T PF09304_consen 14 LQNRLASLERSLEDEK 29 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333443333333
No 362
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.92 E-value=36 Score=29.35 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy16189 18 MEVTGQAFEDMQEQNSRLLQQLREKDDANFK 48 (262)
Q Consensus 18 ie~~~~a~e~~q~q~~~~~~~l~e~e~~~~k 48 (262)
++.+.+-...++..|..++..|.+.|+.-..
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~ 38 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTAL 38 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHH
Confidence 4455556666777777777776666654433
No 363
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.92 E-value=40 Score=29.98 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=16.3
Q ss_pred ccccHHHHHHHhccCCCCccCCCcccCCCCc
Q psy16189 225 HVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 225 H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
-++-..-+...+.++...|+.=..|-+..|+
T Consensus 247 ~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdL 277 (319)
T PF09789_consen 247 GVMSAKQVKELLESESNGCSLPASPQSISDL 277 (319)
T ss_pred ccccHHHHHHHHhcccccCCCCCCcchHHHH
Confidence 3345666777776666666443333333333
No 364
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.88 E-value=1.2 Score=33.71 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=6.9
Q ss_pred cCccccccccc
Q psy16189 205 TLTCPSCKVKR 215 (262)
Q Consensus 205 ~~~C~iC~~~~ 215 (262)
...||.|...|
T Consensus 9 Kr~Cp~cg~kF 19 (129)
T TIGR02300 9 KRICPNTGSKF 19 (129)
T ss_pred cccCCCcCccc
Confidence 35677666655
No 365
>PRK00846 hypothetical protein; Provisional
Probab=80.37 E-value=17 Score=25.21 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHLRN 113 (262)
Q Consensus 98 l~~~i~~lekel~~~~ 113 (262)
+..+|..||-.+.-..
T Consensus 11 le~Ri~~LE~rlAfQe 26 (77)
T PRK00846 11 LEARLVELETRLSFQE 26 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 366
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=80.27 E-value=29 Score=27.89 Aligned_cols=71 Identities=28% Similarity=0.392 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 30 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQT 100 (262)
Q Consensus 30 ~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~ 100 (262)
.+..-|++--.+.....+.|..|+.+....+...-.+.|.|..+...|+.+++--..+++.|-+.|+.|++
T Consensus 95 ~~vRPL~QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 95 ASVRPLLQLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 34445555566777777788888888887777888888999999999999998888888888887777754
No 367
>KOG0976|consensus
Probab=79.91 E-value=70 Score=32.12 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 95 ERYLQTVLTNVEKEL 109 (262)
Q Consensus 95 e~~l~~~i~~lekel 109 (262)
++.+....+.|.+|+
T Consensus 272 m~qlk~kns~L~~El 286 (1265)
T KOG0976|consen 272 MRQLKAKNSVLGDEL 286 (1265)
T ss_pred HHHHHHHHHHHhhhh
Confidence 333333333344433
No 368
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=79.78 E-value=1.1 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=15.9
Q ss_pred ccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 227 FCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 227 fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
+|..|-.. ...+...||.||++++.
T Consensus 29 ~Cp~CG~~-~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 29 PCPQCGTE-VPVDEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCC-CCcccccccccCCcccc
Confidence 36666544 33356678888888764
No 369
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=79.75 E-value=0.58 Score=29.93 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=5.7
Q ss_pred CccCCCcccCCC
Q psy16189 242 KCPKCNAAFGAN 253 (262)
Q Consensus 242 ~CP~Cr~~~~~~ 253 (262)
.||+|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 688888887643
No 370
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=79.54 E-value=0.99 Score=33.32 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=11.1
Q ss_pred ccCCCcccCCCCccc
Q psy16189 243 CPKCNAAFGANDYHR 257 (262)
Q Consensus 243 CP~Cr~~~~~~d~~~ 257 (262)
||.|++.+...-+.+
T Consensus 77 CP~Cgt~levE~~~P 91 (112)
T PF08882_consen 77 CPGCGTQLEVEAPPP 91 (112)
T ss_pred CCCCcceeEEccCCC
Confidence 999999876654443
No 371
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.45 E-value=0.59 Score=42.16 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=0.0
Q ss_pred eeccccccccHHHHHHHhc--cCCCCccCCCccc
Q psy16189 219 VLTKCFHVFCWDCLRTRYE--TRQRKCPKCNAAF 250 (262)
Q Consensus 219 v~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~ 250 (262)
|.+.|||++...=.-..-. .+.+.||.|+.+-
T Consensus 305 VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 305 VYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ----------------------------------
T ss_pred eeccccceeeecccccccccccccccCCCccccC
Confidence 7789999987644322111 1367899998754
No 372
>KOG0396|consensus
Probab=79.06 E-value=1.1 Score=39.98 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=36.6
Q ss_pred ceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 218 AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 218 ~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
|.++|=||++...-+..|-......||.-+..|...+...+|++
T Consensus 346 P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy~~ 389 (389)
T KOG0396|consen 346 PHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVYLS 389 (389)
T ss_pred cccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHhcC
Confidence 57789999999999988766555789999999998888888874
No 373
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.66 E-value=41 Score=28.73 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQT 100 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~ 100 (262)
+..-+..++.++.+.-..+.+.++.+..|..+.-.+......+......+..++..|..+...+...-..|...-..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666666666655555555555555555555555555555555544444444444444444
Q ss_pred HHHHHHHHHH
Q psy16189 101 VLTNVEKELH 110 (262)
Q Consensus 101 ~i~~lekel~ 110 (262)
.+..|..+..
T Consensus 90 ~i~~l~ee~~ 99 (246)
T PF00769_consen 90 EIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 374
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=78.10 E-value=0.69 Score=45.73 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=0.0
Q ss_pred ccCcccccccccccceecccccc-----ccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHV-----FCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~-----fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
....||-|...-....+-.||-. +|..|-...-. ..||.|+......
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~~---~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVEE---DECPKCGRETTSY 705 (900)
T ss_dssp -------------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCccccceeccccccccCc---cccccccccCccc
Confidence 35779999987665666678733 69999876433 3799999987654
No 375
>PRK00295 hypothetical protein; Provisional
Probab=77.86 E-value=18 Score=24.28 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy16189 102 LTNVEKELH 110 (262)
Q Consensus 102 i~~lekel~ 110 (262)
|..||-.+.
T Consensus 7 i~~LE~kla 15 (68)
T PRK00295 7 VTELESRQA 15 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 376
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=77.74 E-value=66 Score=30.62 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFEDMQE 30 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~ 30 (262)
.+++.+...|.+|-.
T Consensus 229 ~ql~~Lk~Gyr~m~~ 243 (570)
T COG4477 229 GQLQDLKAGYRDMKE 243 (570)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 377
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=77.72 E-value=9.5 Score=34.70 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 166 KRLQEEIAQLRRKTERM 182 (262)
Q Consensus 166 ~~~e~e~~~l~~~~~~~ 182 (262)
..++..+..+..++.++
T Consensus 168 ~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 168 KELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444433
No 378
>PRK10722 hypothetical protein; Provisional
Probab=77.62 E-value=17 Score=30.88 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=47.4
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 35 LLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQT 100 (262)
Q Consensus 35 ~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~ 100 (262)
|++-..+..-..+.|..|+.+..-.+.....+.|.+..+...|+.+++.-...++.|.+.|+.|.+
T Consensus 146 L~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSs 211 (247)
T PRK10722 146 LYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSS 211 (247)
T ss_pred HHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444555555666666665555555557788899999999999999888888888888887754
No 379
>KOG4807|consensus
Probab=77.53 E-value=57 Score=29.79 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
.+|..||..+..-.+.+..+-...--.+.-.+|..+.=-.-.--+=-.-|+.| -+.....+..|+.+.....+.+..-
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaM--EetHQkkiEdLQRqHqRELekLreE 371 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAM--EETHQKKIEDLQRQHQRELEKLREE 371 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16189 92 EEK-------------ERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSL 158 (262)
Q Consensus 92 ~e~-------------e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l 158 (262)
++. +..-...-+.|+.++......+....-=-.........++++++-+..+..+.--+...+...+
T Consensus 372 KdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqal 451 (593)
T KOG4807|consen 372 KDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQAL 451 (593)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhccccCc
Q psy16189 159 EAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKETLT 207 (262)
Q Consensus 159 e~~~~~~~~~e~e~~~l~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~ 207 (262)
+.++..+++-+.+-..|..--..+.. .+..++..++..+.
T Consensus 452 EaerqaLRqCQrEnQELnaHNQELnn---------RLaaEItrLRtllt 491 (593)
T KOG4807|consen 452 EAERQALRQCQRENQELNAHNQELNN---------RLAAEITRLRTLLT 491 (593)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhh---------HHHHHHHHHHHHhc
No 380
>KOG1003|consensus
Probab=77.44 E-value=39 Score=27.78 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDA----M 84 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~----~ 84 (262)
.+-.+|...|..+..-.+.-++-..-..+++.+.+-.+-.--...--..+.........+.++.+.+..+.-.+. .
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666655555565555433332111110000122222333334444444433332221 1
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 85 HTAIRKL----------EEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEK 154 (262)
Q Consensus 85 ~~~i~~l----------~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 154 (262)
...+.+| .+.-..-.+.+..|+.++..+.+.+..+..+. ..+-...+.....+..+...+.+.
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~e-------e~~~q~~d~~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKE-------EKLEQKEEKYEEELKELTDKLKEA 156 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHhhh
Confidence 1222222 11112223344555555555554444443333 333344444444444444445554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 155 TSSLEAEAYKTKRLQEEIAQLRRKTERMK 183 (262)
Q Consensus 155 ~~~le~~~~~~~~~e~e~~~l~~~~~~~~ 183 (262)
+...+-.......++.+++.+..++...+
T Consensus 157 E~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 157 ETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred hhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 44444444556666666666665555443
No 381
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=77.29 E-value=2.8 Score=33.99 Aligned_cols=33 Identities=21% Similarity=0.632 Sum_probs=21.3
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
...||.|+..|.-- .- .. ..+.||.||.++..-
T Consensus 117 ~Y~Cp~C~~rytf~-----------eA----~~-~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 117 FFFCPNCHIRFTFD-----------EA----ME-YGFRCPQCGEMLEEY 149 (178)
T ss_pred EEECCCCCcEEeHH-----------HH----hh-cCCcCCCCCCCCeec
Confidence 46788888766421 11 11 368899999988643
No 382
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=77.16 E-value=1.8 Score=44.18 Aligned_cols=46 Identities=17% Similarity=0.547 Sum_probs=34.6
Q ss_pred Cccccccccccc-------ceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKD-------AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~-------~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+..-- +++--||-..|..|..=--+.+...||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 479999997522 1344778889999996544556778999999885
No 383
>PRK04406 hypothetical protein; Provisional
Probab=77.16 E-value=21 Score=24.55 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy16189 101 VLTNVEKELH 110 (262)
Q Consensus 101 ~i~~lekel~ 110 (262)
++..||..+.
T Consensus 12 Ri~~LE~~lA 21 (75)
T PRK04406 12 RINDLECQLA 21 (75)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 384
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=76.97 E-value=1.5 Score=34.40 Aligned_cols=16 Identities=25% Similarity=0.785 Sum_probs=12.0
Q ss_pred CCCCccCCCcccCCCC
Q psy16189 239 RQRKCPKCNAAFGAND 254 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~d 254 (262)
+.+.||.||.++...|
T Consensus 122 ~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 122 GTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEECCCCCCEEEEcC
Confidence 4578999999985443
No 385
>KOG2807|consensus
Probab=76.84 E-value=1.4 Score=38.75 Aligned_cols=40 Identities=28% Similarity=0.666 Sum_probs=20.5
Q ss_pred ccccccccccc-c--eeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 207 TCPSCKVKRKD-A--VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 207 ~C~iC~~~~~~-~--v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
.|..|...... + ..-.|-|.||.+|- .++...-..||.|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccch-HHHHhhhhcCCCcC
Confidence 36666433322 1 23366777777773 22322334577775
No 386
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.79 E-value=65 Score=30.06 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16189 13 ALLNEMEVTGQAFEDMQEQNSRLLQQL 39 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q~q~~~~~~~l 39 (262)
.+.+++..+...+..++.+..+|...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665444
No 387
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=76.75 E-value=1.2 Score=26.18 Aligned_cols=13 Identities=31% Similarity=0.971 Sum_probs=9.7
Q ss_pred Ccccccccccccc
Q psy16189 206 LTCPSCKVKRKDA 218 (262)
Q Consensus 206 ~~C~iC~~~~~~~ 218 (262)
+.||-|...|.-+
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5788888887654
No 388
>PRK02119 hypothetical protein; Provisional
Probab=76.51 E-value=21 Score=24.34 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16189 102 LTNVEKELH 110 (262)
Q Consensus 102 i~~lekel~ 110 (262)
+..||..+.
T Consensus 11 i~~LE~rla 19 (73)
T PRK02119 11 IAELEMKIA 19 (73)
T ss_pred HHHHHHHHH
Confidence 333333333
No 389
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=76.49 E-value=2.4 Score=31.25 Aligned_cols=25 Identities=48% Similarity=1.020 Sum_probs=19.5
Q ss_pred cccccHHHHHHHhcc--------CCCCccCCCc
Q psy16189 224 FHVFCWDCLRTRYET--------RQRKCPKCNA 248 (262)
Q Consensus 224 gH~fC~~Ci~~~~~~--------~~~~CP~Cr~ 248 (262)
.-.||..|+..++.. ....||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 677999999887753 3466999976
No 390
>KOG0309|consensus
Probab=76.46 E-value=1.5 Score=42.79 Aligned_cols=39 Identities=23% Similarity=0.578 Sum_probs=30.4
Q ss_pred Ccccccccccccc--eeccccccccHHHHHHHhccCCCCccC
Q psy16189 206 LTCPSCKVKRKDA--VLTKCFHVFCWDCLRTRYETRQRKCPK 245 (262)
Q Consensus 206 ~~C~iC~~~~~~~--v~l~CgH~fC~~Ci~~~~~~~~~~CP~ 245 (262)
+.|.+|.-..... ++..|||+.-.+|...||..+. .||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCC
Confidence 4577777666543 5569999999999999999776 5875
No 391
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=76.09 E-value=28 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 72 EQVNALKLQIDAMHTAI 88 (262)
Q Consensus 72 ~e~~~l~~~~~~~~~~i 88 (262)
.|-..|++++..++..+
T Consensus 5 ~eYsKLraQ~~vLKKaV 21 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAV 21 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455544444433
No 392
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=75.99 E-value=2 Score=43.75 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=35.2
Q ss_pred Cccccccccccc-------ceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKD-------AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~-------~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+..-- +++--||-..|..|..=-.+.+...||.|++++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 569999997532 1344788889999996655567778999999886
No 393
>KOG0018|consensus
Probab=75.92 E-value=1e+02 Score=31.91 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.6
Q ss_pred hHHHHHHHHhccccCc
Q psy16189 192 DEVMMEEIREYKETLT 207 (262)
Q Consensus 192 ~~~l~~e~~~~~~~~~ 207 (262)
.....+.+..+..++.
T Consensus 487 ~~~~~eave~lKr~fP 502 (1141)
T KOG0018|consen 487 RSRKQEAVEALKRLFP 502 (1141)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4455555666655544
No 394
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.83 E-value=74 Score=30.22 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEAQQ 149 (262)
Q Consensus 136 ~l~~l~~~~~~~~~ 149 (262)
|+.-+...+..+..
T Consensus 488 QLs~MSEHLasmNe 501 (518)
T PF10212_consen 488 QLSMMSEHLASMNE 501 (518)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 395
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=75.72 E-value=1.6 Score=27.10 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.5
Q ss_pred cccccccccccceeccccccccHH
Q psy16189 207 TCPSCKVKRKDAVLTKCFHVFCWD 230 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l~CgH~fC~~ 230 (262)
.|..|.......+.+.|||++|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 488888766556788999999954
No 396
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=75.67 E-value=91 Score=31.15 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16189 25 FEDMQEQNSRLLQQLR 40 (262)
Q Consensus 25 ~e~~q~q~~~~~~~l~ 40 (262)
.+-+..|...+-+++.
T Consensus 196 ~~~L~~ql~~l~~~l~ 211 (754)
T TIGR01005 196 ADFLAPEIADLSKQSR 211 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 397
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.34 E-value=39 Score=26.83 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEA 147 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~ 147 (262)
+..+..++..+..++..+
T Consensus 118 i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 118 IEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 398
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=75.27 E-value=5.2 Score=32.72 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=31.9
Q ss_pred ccCcccccccccccceeccccccccHH-HHHHHhccC--CCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWD-CLRTRYETR--QRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~-Ci~~~~~~~--~~~CP~Cr~~~~~~ 253 (262)
....|..|+. ..+....|||.+-.. .-..+|... +..|..|+..++.+
T Consensus 86 ~~~~CiSCG~--~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn 136 (189)
T PF05766_consen 86 AGKPCISCGR--KHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGN 136 (189)
T ss_pred cCCCcccCCC--cCCCCcccccccccccCcccccChhhHhHcCCccccccccC
Confidence 4688999998 334678999977542 334444333 24599999877643
No 399
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.27 E-value=23 Score=24.10 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy16189 101 VLTNVEKELH 110 (262)
Q Consensus 101 ~i~~lekel~ 110 (262)
+|..||..+.
T Consensus 9 Ri~~LE~~la 18 (72)
T PRK02793 9 RLAELESRLA 18 (72)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 400
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=75.25 E-value=3.2 Score=27.09 Aligned_cols=40 Identities=33% Similarity=0.759 Sum_probs=26.7
Q ss_pred Ccccccccccc--c-ceec---ccccc-c--cHHHHHHHhccCCCCccCCCc
Q psy16189 206 LTCPSCKVKRK--D-AVLT---KCFHV-F--CWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 206 ~~C~iC~~~~~--~-~v~l---~CgH~-f--C~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
..|..|...+. + .+.+ .||.. + |..|-.. .....||.|+.
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~---~~~Y~CP~CGF 56 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQ---SNPYTCPKCGF 56 (59)
T ss_pred ccccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhc---CCceECCCCCC
Confidence 46888887664 2 2222 77877 3 8888665 34567999975
No 401
>KOG1356|consensus
Probab=75.23 E-value=0.87 Score=44.84 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=32.5
Q ss_pred cCccccccccccc--ceeccccccccHHHHHHHhccCC-----CCccCCCccc
Q psy16189 205 TLTCPSCKVKRKD--AVLTKCFHVFCWDCLRTRYETRQ-----RKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~--~v~l~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~ 250 (262)
.--|..|.....+ .++..|||.+|..|+..|+.... -+||+|+...
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 3459999987664 47789999999999999873211 2366655443
No 402
>KOG2264|consensus
Probab=75.15 E-value=42 Score=32.18 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 67 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k 67 (262)
++.+..++-..-..---.+.+.+.+-.+|.+|..+.+++..++.+..
T Consensus 77 ~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 77 IGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555565555555555666677766777777666666665555443
No 403
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=75.06 E-value=1.6 Score=25.18 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=7.8
Q ss_pred CCCccCCCcc
Q psy16189 240 QRKCPKCNAA 249 (262)
Q Consensus 240 ~~~CP~Cr~~ 249 (262)
+..||.|+++
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999885
No 404
>PLN02195 cellulose synthase A
Probab=75.06 E-value=2.6 Score=42.62 Aligned_cols=46 Identities=17% Similarity=0.538 Sum_probs=34.6
Q ss_pred Cccccccccccc-------ceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKD-------AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~-------~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+...- +++--||-..|.+|..=--+.++..||.|++.+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 579999996521 1445888889999986444456677999999987
No 405
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.05 E-value=25 Score=24.37 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy16189 102 LTNVEKELH 110 (262)
Q Consensus 102 i~~lekel~ 110 (262)
|.-|.-++.
T Consensus 20 I~LLqmEie 28 (79)
T PRK15422 20 ITLLQMEIE 28 (79)
T ss_pred HHHHHHHHH
Confidence 333333333
No 406
>PRK00736 hypothetical protein; Provisional
Probab=75.01 E-value=22 Score=23.85 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16189 102 LTNVEKELH 110 (262)
Q Consensus 102 i~~lekel~ 110 (262)
|..||..+.
T Consensus 7 i~~LE~kla 15 (68)
T PRK00736 7 LTELEIRVA 15 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 407
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.99 E-value=31 Score=27.48 Aligned_cols=53 Identities=23% Similarity=0.358 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 132 DLKLHLEKYHAQLKEAQQVVTEKTSSL--EAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 132 ~l~~~l~~l~~~~~~~~~~~~~~~~~l--e~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
+++.++..++..+..+...+..+.... +.....+..++.++..+..++..++.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333332 23334444555555555555555544
No 408
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=74.85 E-value=1.7 Score=28.45 Aligned_cols=14 Identities=21% Similarity=0.847 Sum_probs=10.9
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
++.||+||.|+..+
T Consensus 3 HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD 16 (59)
T ss_pred CCcCCcCCCcCCcc
Confidence 56799999988753
No 409
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.63 E-value=1.7 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.795 Sum_probs=17.1
Q ss_pred cccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 224 FHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 224 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
...||+.|-...+. .||.|.+++...
T Consensus 27 ~eafcskcgeati~----qcp~csasirgd 52 (160)
T COG4306 27 MEAFCSKCGEATIT----QCPICSASIRGD 52 (160)
T ss_pred HHHHHhhhchHHHh----cCCccCCccccc
Confidence 34578888766544 488888877543
No 410
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.60 E-value=26 Score=26.03 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 59 LHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 59 ~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
....+.+++..|..|+..|+..+
T Consensus 30 ~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 30 QLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555433
No 411
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.40 E-value=78 Score=30.14 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy16189 167 RLQEEIAQLRRKT 179 (262)
Q Consensus 167 ~~e~e~~~l~~~~ 179 (262)
.+++++..++.++
T Consensus 156 ~~~~~l~~l~~~l 168 (525)
T TIGR02231 156 ELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 412
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.40 E-value=31 Score=25.13 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 52 ERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 52 e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+.+..++.+..+..+.+.+..+...+..++.
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~ 60 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333344444444444444444444444333
No 413
>KOG1729|consensus
Probab=74.38 E-value=0.66 Score=40.52 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=30.3
Q ss_pred Cccccccc-cccc----ceeccccccccHHHHHHHhcc-----CC-CCccCCCccc
Q psy16189 206 LTCPSCKV-KRKD----AVLTKCFHVFCWDCLRTRYET-----RQ-RKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~-~~~~----~v~l~CgH~fC~~Ci~~~~~~-----~~-~~CP~Cr~~~ 250 (262)
..|.+|.. .|.- ...-.||++||..|-...+.. ++ +.|+.|=..+
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 67999998 5532 234599999999998764321 22 3588884444
No 414
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.08 E-value=1.8 Score=32.08 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=9.7
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
.+..||+|++.|...
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 344588887777554
No 415
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.05 E-value=1e+02 Score=31.01 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 103 TNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 103 ~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
..++-.+....+.++..+.++.+....+.+++.++..++.....+...+.......+....+...++.++..+..++..+
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~L 685 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSL 685 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555566666665555444444444444443333333334444444444444444444
No 416
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.04 E-value=61 Score=28.44 Aligned_cols=32 Identities=6% Similarity=0.268 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 40 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~ 40 (262)
+.-+.|...+-.+.....++..+-.-+..++.
T Consensus 41 ekRdeln~kvrE~~e~~~elr~~rdeineev~ 72 (294)
T COG1340 41 EKRDELNAKVRELREKAQELREERDEINEEVQ 72 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444444444
No 417
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.01 E-value=66 Score=28.75 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLE 138 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~ 138 (262)
.+.|...+..|..++-.....+.+.+..-..+...+..++.+...++-.++.+.+...|...+...|.+++.
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444445555555554444444444444444434444444443
No 418
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=73.86 E-value=10 Score=33.68 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 53 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~ 53 (262)
.-...+++..+-.+..+...|+.....+...+.++...+..+....
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl 72 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSL 72 (326)
T ss_dssp ----------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888999999999888888888887777776665444
No 419
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.73 E-value=64 Score=28.52 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 53 RIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 53 ~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
..-..-+|..+|-....|..+..+|.=+++-+++.+.-+++
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE 126 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEE 126 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555545555555555555555544444443433
No 420
>PRK05978 hypothetical protein; Provisional
Probab=73.54 E-value=2.5 Score=33.14 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=25.1
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC--CccccccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN--DYHRLYLE 261 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--d~~~iy~~ 261 (262)
.+||-|.+ ||.|= .+++ =...||.|+..|... |..+-||+
T Consensus 34 grCP~CG~----------G~LF~-----g~Lk-v~~~C~~CG~~~~~~~a~DgpAy~~ 75 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLK-PVDHCAACGEDFTHHRADDLPAYLV 75 (148)
T ss_pred CcCCCCCC----------Ccccc-----cccc-cCCCccccCCccccCCccccCcchh
Confidence 56888887 66662 3333 345699999999654 33444654
No 421
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.50 E-value=96 Score=30.45 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 60 HKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 60 ~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+..+..+...++.++..+..++.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 422
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.45 E-value=55 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 101 VLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLE 138 (262)
Q Consensus 101 ~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~ 138 (262)
.+..++.++..........+..+..+...+.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444444333
No 423
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.41 E-value=1.6 Score=32.41 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=21.5
Q ss_pred ccccCccccccccc----ccce-eccccccccHH
Q psy16189 202 YKETLTCPSCKVKR----KDAV-LTKCFHVFCWD 230 (262)
Q Consensus 202 ~~~~~~C~iC~~~~----~~~v-~l~CgH~fC~~ 230 (262)
+-....||.|...| +.|+ ...||+.|=..
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 33457899999988 5664 67899987554
No 424
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=73.22 E-value=1.7 Score=25.38 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q psy16189 206 LTCPSCKVKRKD 217 (262)
Q Consensus 206 ~~C~iC~~~~~~ 217 (262)
+.||-|...|.-
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 578888887753
No 425
>KOG1842|consensus
Probab=73.05 E-value=3 Score=38.27 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=23.9
Q ss_pred cCccccccccccc----ceeccccccccHHHHHH
Q psy16189 205 TLTCPSCKVKRKD----AVLTKCFHVFCWDCLRT 234 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~ 234 (262)
...||.|...|.- ..+--||-+.|.+|..-
T Consensus 180 V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 180 VQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred ccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 3789999999843 34558999999999764
No 426
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=72.87 E-value=83 Score=30.37 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLR------EKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~------e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
.+++.+++.|++++.--.....++. +....+..+....++.-.....+.++.+.+..+.++.+..+..
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766665555553 3334444444444444344444444444444444444443333
No 427
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=72.85 E-value=0.5 Score=26.73 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=10.4
Q ss_pred ccccHHHHHHHhcc---CCCCccCCCc
Q psy16189 225 HVFCWDCLRTRYET---RQRKCPKCNA 248 (262)
Q Consensus 225 H~fC~~Ci~~~~~~---~~~~CP~Cr~ 248 (262)
|.||..|-.+.... ..+.||.|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 55666665543322 2345888765
No 428
>PLN02400 cellulose synthase
Probab=72.84 E-value=2.1 Score=43.78 Aligned_cols=46 Identities=17% Similarity=0.514 Sum_probs=34.1
Q ss_pred Cccccccccccc-------ceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKD-------AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~-------~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|.||.+..-- +++--||-..|..|..=--+.+...||.|++.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 479999997632 1344778788999986544456677999999885
No 429
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=72.77 E-value=4.8 Score=25.83 Aligned_cols=41 Identities=32% Similarity=0.689 Sum_probs=30.0
Q ss_pred Ccccccccccc--cc--eeccccccccHHHHHHHhccCCCCccC--CCcccC
Q psy16189 206 LTCPSCKVKRK--DA--VLTKCFHVFCWDCLRTRYETRQRKCPK--CNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~--~~--v~l~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~ 251 (262)
..|++|...|+ +. +...||-.+-.+|... .-.|-. |+.+|.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGFE 52 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCcc
Confidence 57999999994 43 4459998888899765 334766 877764
No 430
>PRK12495 hypothetical protein; Provisional
Probab=72.74 E-value=12 Score=31.24 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=8.7
Q ss_pred cCcccccccccc
Q psy16189 205 TLTCPSCKVKRK 216 (262)
Q Consensus 205 ~~~C~iC~~~~~ 216 (262)
...|+.|..++.
T Consensus 42 a~hC~~CG~PIp 53 (226)
T PRK12495 42 NAHCDECGDPIF 53 (226)
T ss_pred hhhcccccCccc
Confidence 367998887654
No 431
>KOG2041|consensus
Probab=72.66 E-value=1.9 Score=41.95 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=17.5
Q ss_pred cHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 228 CWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 228 C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
|..|..+.--++.+.||.|+.+.+..
T Consensus 1162 CkH~a~~~EIs~y~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1162 CKHRAHQHEISKYNCCPLCHSMESFR 1187 (1189)
T ss_pred cccccccccccccccCccccChhhcc
Confidence 44455554455678899999887653
No 432
>PRK00420 hypothetical protein; Validated
Probab=72.50 E-value=0.87 Score=33.95 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=17.4
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..||+|..++.. +..+...||.|+.++..
T Consensus 24 ~~CP~Cg~pLf~------------------lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFE------------------LKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCccee------------------cCCCceECCCCCCeeee
Confidence 678888865432 12344557777776543
No 433
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=71.77 E-value=75 Score=28.45 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 64 REEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQ 114 (262)
Q Consensus 64 ~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~ 114 (262)
.++-+.+..+.+.|+.........++.+.+......+.|+.-.+.+..+..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~ 53 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666655555555555444444444444444444433
No 434
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=71.71 E-value=0.83 Score=24.16 Aligned_cols=8 Identities=38% Similarity=1.157 Sum_probs=6.0
Q ss_pred CCCccCCC
Q psy16189 240 QRKCPKCN 247 (262)
Q Consensus 240 ~~~CP~Cr 247 (262)
.+.||.|+
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 35699997
No 435
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.56 E-value=37 Score=24.83 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+.+.|-.+..||.-|-+-+.+-...+..|..++-..++..+.+..+.|+|.=-+..|-..++
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766667776666666666666666666666554444444333
No 436
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=71.51 E-value=54 Score=26.68 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 82 DAMHTAIRKLEEKERYLQTVLTNVEKEL 109 (262)
Q Consensus 82 ~~~~~~i~~l~e~e~~l~~~i~~lekel 109 (262)
..+...|.+|..+-..|+.....++.++
T Consensus 12 q~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 12 QRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666
No 437
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=71.34 E-value=2.2 Score=30.96 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=16.8
Q ss_pred eeccccccccHHHHHHHhccCCCCccCCCcc
Q psy16189 219 VLTKCFHVFCWDCLRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 219 v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 249 (262)
.++.|||.|-.. -...+ .-||.|+..
T Consensus 4 ~CtrCG~vf~~g-~~~il----~GCp~CG~n 29 (112)
T COG3364 4 QCTRCGEVFDDG-SEEIL----SGCPKCGCN 29 (112)
T ss_pred eecccccccccc-cHHHH----ccCccccch
Confidence 467999999665 22222 249999763
No 438
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=71.10 E-value=1.9 Score=23.01 Aligned_cols=14 Identities=36% Similarity=0.971 Sum_probs=10.2
Q ss_pred cCCCCccCCCcccC
Q psy16189 238 TRQRKCPKCNAAFG 251 (262)
Q Consensus 238 ~~~~~CP~Cr~~~~ 251 (262)
.++..||.|+..|.
T Consensus 12 ~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 12 EKPYKCPYCGKSFS 25 (26)
T ss_dssp SSSEEESSSSEEES
T ss_pred CCCCCCCCCcCeeC
Confidence 35567999988774
No 439
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.01 E-value=3 Score=25.88 Aligned_cols=39 Identities=23% Similarity=0.604 Sum_probs=23.3
Q ss_pred ccccccccc--cceeccccc-----cccHHHHHHHhcc-CCCCccCC
Q psy16189 208 CPSCKVKRK--DAVLTKCFH-----VFCWDCLRTRYET-RQRKCPKC 246 (262)
Q Consensus 208 C~iC~~~~~--~~v~l~CgH-----~fC~~Ci~~~~~~-~~~~CP~C 246 (262)
|-||..... ++.+.||+= ..-..|+..|+.. +...||.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 667887643 256778842 2357899999985 45669987
No 440
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.00 E-value=24 Score=31.70 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 44 DANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 44 ~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
+.+.++..+...+.......+.+...++..+..|+.+.+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~ 259 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE 259 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444333
No 441
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=70.61 E-value=1.1 Score=27.14 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=15.5
Q ss_pred eccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 220 LTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 220 ~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
...|||.|-...-- .......||.|+.
T Consensus 8 C~~Cg~~fe~~~~~--~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSI--SEDDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEc--CCCCCCcCCCCCC
Confidence 34777777443211 1124567999977
No 442
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=70.35 E-value=13 Score=32.95 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 137 LEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMK 183 (262)
Q Consensus 137 l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~ 183 (262)
+......+..++..+....-.+.+.+...-...-.+..|..++..+.
T Consensus 107 ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 107 LSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 33333344444444444444444444444444444444444444443
No 443
>KOG4603|consensus
Probab=70.25 E-value=55 Score=26.30 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 87 AIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQ 149 (262)
Q Consensus 87 ~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~ 149 (262)
.|.+|.++-+.+....+.++.++..+...+. +.+++..+.+|+..+.....++..++.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666677778888877766654 233444455555555555555544443
No 444
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=69.77 E-value=2.1 Score=42.30 Aligned_cols=25 Identities=24% Similarity=0.761 Sum_probs=17.8
Q ss_pred ccHHHHHHHhccCC-------CCccCCCcccC
Q psy16189 227 FCWDCLRTRYETRQ-------RKCPKCNAAFG 251 (262)
Q Consensus 227 fC~~Ci~~~~~~~~-------~~CP~Cr~~~~ 251 (262)
.|..|...+..... ..||.|+..+.
T Consensus 120 ~C~~C~~ey~~p~~rr~h~~~~~C~~Cgp~l~ 151 (711)
T TIGR00143 120 LCPDCAKEYKDPLDRRFHAQPIACPRCGPQLN 151 (711)
T ss_pred CCHHHHHHhcCCccccCCCCCccCCCCCcEEE
Confidence 39999998755322 23999988773
No 445
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.75 E-value=52 Score=28.38 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 43 DDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEK 107 (262)
Q Consensus 43 e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lek 107 (262)
++.+.+|.....--.+....+....+.+..|+..|+-+++.+.-.+.++.++.+.+...+..+-.
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555544333333566677788889999999999999999888888888888887766666443
No 446
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=69.71 E-value=42 Score=24.72 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKE 146 (262)
Q Consensus 98 l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~ 146 (262)
+-.++..++.++..+-..+...+..+.++-.+...|+-+.+.++.++..
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3445556666666555555555555555555555555555555555443
No 447
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1899|consensus
Probab=69.42 E-value=1.2e+02 Score=29.70 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT 51 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~ 51 (262)
.+.+.|-.=+-++.-+.+.++-|.+-|-.|+.+.-+.+.-|..
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLET 146 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHH
Confidence 5666777778888889999999999999988887777766543
No 449
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.63 E-value=1.1e+02 Score=28.89 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16189 165 TKRLQEEIAQLRRKTE 180 (262)
Q Consensus 165 ~~~~e~e~~~l~~~~~ 180 (262)
...++..+..|..+++
T Consensus 125 ~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 125 RQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444555554443
No 450
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.49 E-value=2.9 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=9.9
Q ss_pred CCCccCCCcccC
Q psy16189 240 QRKCPKCNAAFG 251 (262)
Q Consensus 240 ~~~CP~Cr~~~~ 251 (262)
...||+|+.||.
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 356999999996
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.27 E-value=1.3e+02 Score=29.64 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 13 ALLNEMEVTGQAFEDMQ 29 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q 29 (262)
.|-.++..+.....+..
T Consensus 266 ~Le~ei~~le~e~~e~~ 282 (650)
T TIGR03185 266 QLERQLKEIEAARKANR 282 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 452
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=68.04 E-value=34 Score=24.23 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 43 DDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAM 84 (262)
Q Consensus 43 e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~ 84 (262)
+|.+.+|.+-..-+-.....+..++..|..|++.|+.+++..
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~n 43 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHN 43 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhC
Confidence 455555544443443344456667788889999999888863
No 453
>KOG4593|consensus
Probab=67.99 E-value=1.3e+02 Score=29.67 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 40 REKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 40 ~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
.++++....+.+-+.|+++....+..+..-....++.+...+.
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~ 189 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQ 189 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666655555555555555544444443
No 454
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.83 E-value=59 Score=27.88 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy16189 14 LLNEMEVTGQAFEDMQEQNSRLLQQLREKD 43 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e 43 (262)
|-.++..+.+-.++.+..|.+|-.+|...+
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555555544444444333
No 455
>PRK01343 zinc-binding protein; Provisional
Probab=67.72 E-value=4 Score=26.46 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=7.1
Q ss_pred CCccCCCcccC
Q psy16189 241 RKCPKCNAAFG 251 (262)
Q Consensus 241 ~~CP~Cr~~~~ 251 (262)
..||+|+.++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 45777777664
No 456
>KOG3091|consensus
Probab=67.69 E-value=1e+02 Score=29.02 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHH
Q psy16189 117 DLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVM 195 (262)
Q Consensus 117 ~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l 195 (262)
+.+.+++.=..++...++..+..+...+.+++..-......++..+.+..++...+-++-.+.+-+++. -.+....+.|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Q ss_pred HHHHHhc
Q psy16189 196 MEEIREY 202 (262)
Q Consensus 196 ~~e~~~~ 202 (262)
...++.+
T Consensus 417 r~Kldtl 423 (508)
T KOG3091|consen 417 RAKLDTL 423 (508)
T ss_pred HHHHHHH
No 457
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=67.57 E-value=4.1 Score=23.21 Aligned_cols=36 Identities=31% Similarity=0.671 Sum_probs=20.0
Q ss_pred cccccccccccc--eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 207 TCPSCKVKRKDA--VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 207 ~C~iC~~~~~~~--v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
.|+.|...+... ++..=|..|...| +.|..|+.+|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C---------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC---------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC---------CCCcccCCcCc
Confidence 478888877653 3322233333333 35777877663
No 458
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=67.33 E-value=2.6 Score=41.43 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.1
Q ss_pred Cccccccccccc---------ceeccccccccHHHHHHHh
Q psy16189 206 LTCPSCKVKRKD---------AVLTKCFHVFCWDCLRTRY 236 (262)
Q Consensus 206 ~~C~iC~~~~~~---------~v~l~CgH~fC~~Ci~~~~ 236 (262)
..|..|...|.. ..+-.||++||..|...+.
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 469999998842 2355899999999987654
No 459
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.19 E-value=72 Score=26.44 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=16.8
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 37 QQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNA 76 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~ 76 (262)
+-|.++++.+.++......+-.....+....+.+..++..
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444433333333333333333333
No 460
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.12 E-value=1.1e+02 Score=28.54 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLK 145 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~ 145 (262)
+..+..++..++.++.
T Consensus 245 i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 245 IDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444443333333
No 461
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=67.02 E-value=1.8 Score=31.13 Aligned_cols=38 Identities=29% Similarity=0.686 Sum_probs=23.2
Q ss_pred Cccccccccccccee-----------ccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 206 LTCPSCKVKRKDAVL-----------TKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~-----------l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
-.|+.|..-.-+... +|+|-.+|..+ +.++|+.|++.|
T Consensus 50 ggCp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~-------r~~rC~nCG~~f 98 (98)
T PF10164_consen 50 GGCPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAM-------RERRCSNCGATF 98 (98)
T ss_pred cCCCCCceeeecccccHHHHHHHHHHHhhHHHHhhhc-------CccccCCCCccC
Confidence 358888875433322 25554444433 667899999865
No 462
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.93 E-value=55 Score=24.97 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~ 176 (262)
++..-...+-+++......+...|+++. +++..+-..++....-....+..+.+....++........+..-+..|.
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554443332 3344444444444444444444455555555555555555555555555
Q ss_pred HHHHHH
Q psy16189 177 RKTERM 182 (262)
Q Consensus 177 ~~~~~~ 182 (262)
.++..+
T Consensus 117 ~ki~~i 122 (126)
T PF07889_consen 117 GKIDEI 122 (126)
T ss_pred HHHHHH
Confidence 555443
No 463
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=66.87 E-value=1.6 Score=34.91 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=8.9
Q ss_pred CCCCccCCCccc
Q psy16189 239 RQRKCPKCNAAF 250 (262)
Q Consensus 239 ~~~~CP~Cr~~~ 250 (262)
.+-.||+|++|-
T Consensus 148 ~P~~CPiCga~k 159 (166)
T COG1592 148 APEVCPICGAPK 159 (166)
T ss_pred CCCcCCCCCChH
Confidence 355799999863
No 464
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=66.77 E-value=2.6 Score=27.80 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=19.4
Q ss_pred ccccccc-cccceeccccccccHH----HHHHHhc
Q psy16189 208 CPSCKVK-RKDAVLTKCFHVFCWD----CLRTRYE 237 (262)
Q Consensus 208 C~iC~~~-~~~~v~l~CgH~fC~~----Ci~~~~~ 237 (262)
|..|... ....+.|.||+++|.. .....+.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~ 35 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYK 35 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHH
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhc
Confidence 6778866 3344788999999996 5555443
No 465
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=66.67 E-value=78 Score=26.69 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 50 MTERIKSNQLHKLAREEKDILHEQVNALKL 79 (262)
Q Consensus 50 ~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~ 79 (262)
..+..++.+....++.....+..++..+..
T Consensus 37 ~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~ 66 (225)
T COG1842 37 ESELAKARQALAQAIARQKQLERKLEEAQA 66 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334433333333333333333333333
No 466
>KOG4718|consensus
Probab=66.67 E-value=4.1 Score=33.70 Aligned_cols=47 Identities=17% Similarity=0.457 Sum_probs=34.3
Q ss_pred cCcccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...|.+|....-.. ..=.||-.+-.+|++..+.. ...||.|+--++.
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 35699999865433 34577777778999998874 5679999876654
No 467
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=66.40 E-value=31 Score=31.40 Aligned_cols=41 Identities=12% Similarity=0.370 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 136 ~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~ 176 (262)
.++.++.++..+...+.+....+.......+.+...+..+.
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333344444444433
No 468
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.38 E-value=37 Score=31.88 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQLRRKTE 180 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~ 180 (262)
+++.++.++..|+.+++
T Consensus 105 KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 105 RIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455544443
No 469
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.37 E-value=64 Score=25.60 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFE 26 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e 26 (262)
.+++.|.+.|-..|.
T Consensus 6 ~~Ig~EfE~lId~~G 20 (158)
T PF09744_consen 6 SSIGKEFERLIDRYG 20 (158)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456666666666553
No 470
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=66.37 E-value=1.4 Score=23.49 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=9.8
Q ss_pred CCccCCCcccCCC
Q psy16189 241 RKCPKCNAAFGAN 253 (262)
Q Consensus 241 ~~CP~Cr~~~~~~ 253 (262)
..||.|+..|...
T Consensus 3 ~~C~~CgR~F~~~ 15 (25)
T PF13913_consen 3 VPCPICGRKFNPD 15 (25)
T ss_pred CcCCCCCCEECHH
Confidence 4699999988643
No 471
>KOG2169|consensus
Probab=66.24 E-value=3.7 Score=40.10 Aligned_cols=54 Identities=24% Similarity=0.505 Sum_probs=35.7
Q ss_pred ccccCcccccccccccce-eccccccccHHHHHHHh---ccCCCCccCCCcccCCCCc
Q psy16189 202 YKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRY---ETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v-~l~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~~~~d~ 255 (262)
+.-.+.|+++..++.-|+ -..|.|.-|++-..-.- ....+.||+|...+...++
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 455688999998877653 45777776665543211 1234679999998876554
No 472
>PRK00420 hypothetical protein; Validated
Probab=65.92 E-value=2.2 Score=31.79 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=8.0
Q ss_pred ccCccccccccc
Q psy16189 204 ETLTCPSCKVKR 215 (262)
Q Consensus 204 ~~~~C~iC~~~~ 215 (262)
....||+|...+
T Consensus 39 g~~~Cp~Cg~~~ 50 (112)
T PRK00420 39 GEVVCPVHGKVY 50 (112)
T ss_pred CceECCCCCCee
Confidence 346788888744
No 473
>KOG3362|consensus
Probab=65.72 E-value=2.1 Score=33.05 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=23.3
Q ss_pred CcccccccccccceeccccccccH-HHHHHHhcc
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCW-DCLRTRYET 238 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~-~Ci~~~~~~ 238 (262)
-+|.||+ .+.....+.||..+|. .|...+-.+
T Consensus 119 ~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 119 KFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNET 151 (156)
T ss_pred hhhhhcC-CCchhHHHhcCCceeechhhhhcccc
Confidence 5699999 5666678899988864 677665443
No 474
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.69 E-value=1.5e+02 Score=29.58 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 75 NALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD--LNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVT 152 (262)
Q Consensus 75 ~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~--~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~ 152 (262)
.++....+.....+.=+.++-..+..++...|.++..++.... ............+.++..++..++.+..++.....
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~ 335 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYK 335 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 153 EKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 153 ~~~~~le~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
...-.+.....+...++.++..++.++..+
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~ 365 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQERKRLNKRVSAM 365 (726)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHhc
No 475
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.69 E-value=42 Score=22.86 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 64 REEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAAD 132 (262)
Q Consensus 64 ~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~ 132 (262)
.+..+.|+..+..+-..+..++..+..|++....+......|..+...+++.......++.-+-..+.+
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 476
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=64.62 E-value=8 Score=29.62 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHHHHHHhccccCccccccccc-ccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 192 DEVMMEEIREYKETLTCPSCKVKR-KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 192 ~~~l~~e~~~~~~~~~C~iC~~~~-~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
.+...-..........||.|.... ...-...+|| ..++||.|+..|...+-.++
T Consensus 17 ~~~~~~~~~~~~~~~~cP~C~s~~~~k~g~~~~~~-------------qRyrC~~C~~tf~~~~~~~~ 71 (129)
T COG3677 17 LADAAYAIRMQITKVNCPRCKSSNVVKIGGIRRGH-------------QRYKCKSCGSTFTVETGSPL 71 (129)
T ss_pred HHHHHHHHhhhcccCcCCCCCccceeeECCccccc-------------cccccCCcCcceeeeccCcc
No 477
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=64.57 E-value=1.3e+02 Score=29.12 Aligned_cols=99 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16189 80 QIDAMHTAIRKLEEKERYLQTVLTNV--EKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSS 157 (262)
Q Consensus 80 ~~~~~~~~i~~l~e~e~~l~~~i~~l--ekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 157 (262)
......+.-..+++....+...+..| ..++..+++.++..+.+....-..+...+.+++.+.++.......+.....+
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16189 158 LEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 158 le~~~~~~~~~e~e~~~l~~~ 178 (262)
+.......+..-.++..+...
T Consensus 242 l~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred HHHhHHHHHHHHHHHHhccHh
No 478
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.54 E-value=95 Score=26.88 Aligned_cols=173 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAM----------- 84 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~----------- 84 (262)
+++..+.....+++.+...|..++.+.-..+..+..+..+.++....+..+.+.+...+...+..+.+.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy16189 85 --------HTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTS 156 (262)
Q Consensus 85 --------~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 156 (262)
.+.+.-+-.+-..+..-++.=.+-+...+.+-..++.+-..+......+..-...++..+..+.....++..
T Consensus 118 ~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~ 197 (265)
T COG3883 118 SYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNA 197 (265)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16189 157 SLEAEAYKTKRLQEEIAQLRRKTERMKKIEQA 188 (262)
Q Consensus 157 ~le~~~~~~~~~e~e~~~l~~~~~~~~~~~~~ 188 (262)
.+.........+..+...+............+
T Consensus 198 l~~~~aa~~a~~~~e~a~l~~qka~a~a~a~~ 229 (265)
T COG3883 198 LIAALAAKEASALGEKAALEEQKALAEAAAAE 229 (265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 479
>KOG2789|consensus
Probab=64.30 E-value=3.3 Score=37.47 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=0.0
Q ss_pred cccccccccccceec--cccccccHHHHHHHhccCCCC-----------------------ccCCCcccCCCCcccc
Q psy16189 207 TCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYETRQRK-----------------------CPKCNAAFGANDYHRL 258 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l--~CgH~fC~~Ci~~~~~~~~~~-----------------------CP~Cr~~~~~~d~~~i 258 (262)
.||||.-.+....-+ -|..++|..|+-+.-.....+ ||.|..+-..-.+++|
T Consensus 76 ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i 152 (482)
T KOG2789|consen 76 ECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKI 152 (482)
T ss_pred cCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeecc
No 480
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.01 E-value=4.7 Score=26.70 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCccCCCcccCCCCccccc
Q psy16189 240 QRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~d~~~iy 259 (262)
...||.|++++.-....++|
T Consensus 7 ~v~CP~Cgkpv~w~~~s~fr 26 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFR 26 (65)
T ss_pred cccCCCCCCcccccccCCcC
No 481
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.99 E-value=2.2 Score=26.51 Aligned_cols=9 Identities=44% Similarity=1.357 Sum_probs=0.0
Q ss_pred ccCCCcccC
Q psy16189 243 CPKCNAAFG 251 (262)
Q Consensus 243 CP~Cr~~~~ 251 (262)
||+|+.||.
T Consensus 15 CpvCqRPFs 23 (54)
T COG4338 15 CPVCQRPFS 23 (54)
T ss_pred hhhhcCchH
No 482
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=63.67 E-value=53 Score=23.71 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 68 DILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147 (262)
Q Consensus 68 ~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~ 147 (262)
+.+..-.+-+..++........-|+...+....+...+..-...+...++..+.+..++. .+..+++.++.++..+
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~----~~l~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQ----PYLQQIDQIEEQVTEL 78 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy16189 148 QQVVTEKTSSLEAEAYKTKRL 168 (262)
Q Consensus 148 ~~~~~~~~~~le~~~~~~~~~ 168 (262)
...+..++.-......+.+.+
T Consensus 79 E~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 79 EQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
No 483
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=63.46 E-value=78 Score=25.56 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 84 MHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVV 151 (262)
Q Consensus 84 ~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~ 151 (262)
....+..|++....+..++..|+..+......+.. ..+....++++++...+..++..+..+....
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
No 484
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=63.42 E-value=65 Score=24.63 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy16189 64 REEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELH--------------------------------- 110 (262)
Q Consensus 64 ~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~--------------------------------- 110 (262)
+.+...+......++.+++.....+..+......+..-++.++.=-.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16189 111 ------LRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159 (262)
Q Consensus 111 ------~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le 159 (262)
.+.+++..++++...+...+..+...+..+.+++..+...+..+..+..
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 485
>KOG3842|consensus
Probab=63.36 E-value=5.6 Score=34.97 Aligned_cols=64 Identities=28% Similarity=0.434 Sum_probs=0.0
Q ss_pred hHHHHHHHHhccccCcccccccccccc--------------eeccccccccHHHHHHHhccC--CCCccCCCcccCCCCc
Q psy16189 192 DEVMMEEIREYKETLTCPSCKVKRKDA--------------VLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGANDY 255 (262)
Q Consensus 192 ~~~l~~e~~~~~~~~~C~iC~~~~~~~--------------v~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~d~ 255 (262)
.+.+..++.+-+ -.||+=.....-| |.+.|||+-...=.-..-..+ .+.||.|+..-. +
T Consensus 279 lE~~~~~iNA~R--PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp---~ 353 (429)
T KOG3842|consen 279 LEALRQEINAAR--PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP---Y 353 (429)
T ss_pred HHHHHHHHhccC--CCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeeeecc---e
Q ss_pred ccccc
Q psy16189 256 HRLYL 260 (262)
Q Consensus 256 ~~iy~ 260 (262)
.++|+
T Consensus 354 V~L~l 358 (429)
T KOG3842|consen 354 VPLWL 358 (429)
T ss_pred eeeec
No 486
>PRK10698 phage shock protein PspA; Provisional
Probab=63.06 E-value=91 Score=26.16 Aligned_cols=166 Identities=11% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 14 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-----NQLHKLAREEKDILHEQVNALKLQIDAMHTAI 88 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka-----~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i 88 (262)
+...+..+.++....-....++-.++.+....+.++...-..| +.....+..++......+..|+.+++.+...+
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~ 115 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETL 115 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLRNQAMD--LNKRKAIESAQS--AADLKLHLEKYHAQLKEAQQVVTEKTSS----LEA 160 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~~~~~~--~~k~k~~e~~~~--~~~l~~~l~~l~~~~~~~~~~~~~~~~~----le~ 160 (262)
.+|+.....+..++..+......+.--.. ....++.+.... ....-...+.++..+..+.........- ++.
T Consensus 116 ~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~ 195 (222)
T PRK10698 116 ARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQ 195 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHH
Q ss_pred HHHHHHH---HHHHHHHHHHHH
Q psy16189 161 EAYKTKR---LQEEIAQLRRKT 179 (262)
Q Consensus 161 ~~~~~~~---~e~e~~~l~~~~ 179 (262)
+-..+.. ++.++..|+.++
T Consensus 196 e~~~le~~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 196 QFAELKADDEISEQLAALKAKM 217 (222)
T ss_pred HHHHhhccchHHHHHHHHHHHh
No 487
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=63.06 E-value=3.9 Score=35.79 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=0.0
Q ss_pred ccccccccccc--------------eeccccccccHHHHHHHhccCCCCccCCCcc
Q psy16189 208 CPSCKVKRKDA--------------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 208 C~iC~~~~~~~--------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 249 (262)
|.+|..+|..| ..-.|..+||.+| +.+....-..||.|..+
T Consensus 365 Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dC-dvfiHe~Lh~C~gCe~~ 419 (421)
T COG5151 365 CFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDC-DVFIHETLHFCIGCELP 419 (421)
T ss_pred ceeccCCCCCCCCCcccccccccceechhhhhhhhhhh-HHHHHHHHhhCCCCcCC
No 488
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=62.77 E-value=2.4 Score=31.86 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred cccccHHHHHHHhccCCCC--ccCCCcc
Q psy16189 224 FHVFCWDCLRTRYETRQRK--CPKCNAA 249 (262)
Q Consensus 224 gH~fC~~Ci~~~~~~~~~~--CP~Cr~~ 249 (262)
+..+|..|-..+-...... ||.|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCC
No 489
>KOG0269|consensus
Probab=62.64 E-value=7.5 Score=38.18 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=0.0
Q ss_pred ccccccccccceec--cccccccHHHHHHHhccCCCCccC--CCcccCCCCccccccC
Q psy16189 208 CPSCKVKRKDAVLT--KCFHVFCWDCLRTRYETRQRKCPK--CNAAFGANDYHRLYLE 261 (262)
Q Consensus 208 C~iC~~~~~~~v~l--~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~d~~~iy~~ 261 (262)
|.+|...++....- .|||..-.+|+..|+- ....||. |+.+-....+...|..
T Consensus 782 CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~~~~~D~~~l 838 (839)
T KOG0269|consen 782 CTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHYSSFIDTFML 838 (839)
T ss_pred ceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccccccchhhhc
No 490
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=62.61 E-value=2.7 Score=39.59 Aligned_cols=35 Identities=23% Similarity=0.658 Sum_probs=0.0
Q ss_pred cccccccccccceeccccccccH-HHHHHHhccCCCCccCCCcccC
Q psy16189 207 TCPSCKVKRKDAVLTKCFHVFCW-DCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l~CgH~fC~-~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
.||-|+..+...-...-|+ +|. .|+. ||.|..++.
T Consensus 28 yCp~CL~~~p~~e~~~~~n-rC~r~Cf~---------CP~C~~~L~ 63 (483)
T PF05502_consen 28 YCPNCLFEVPSSEARSEKN-RCSRNCFD---------CPICFSPLS 63 (483)
T ss_pred ECccccccCChhhheeccc-eecccccc---------CCCCCCcce
No 491
>KOG0249|consensus
Probab=62.37 E-value=1.7e+02 Score=29.10 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 19 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYL 98 (262)
Q Consensus 19 e~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l 98 (262)
+.++.|-+.+++-.. .-.+-+.+..+.+-+.+..++........+....+..++..+...+.........-.+-.+.+
T Consensus 119 erLelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rl 196 (916)
T KOG0249|consen 119 ERLELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRL 196 (916)
T ss_pred HHHHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 99 QTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 99 ~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~ 178 (262)
...+. +-+..+.++.....+....|..+++.+++++.++...-..+....+..+.....+......-..+
T Consensus 197 sdtvd----------ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~ 266 (916)
T KOG0249|consen 197 SDTVD----------ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQE 266 (916)
T ss_pred ccccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q ss_pred H
Q psy16189 179 T 179 (262)
Q Consensus 179 ~ 179 (262)
+
T Consensus 267 m 267 (916)
T KOG0249|consen 267 L 267 (916)
T ss_pred h
No 492
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.37 E-value=1.3 Score=37.15 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=0.0
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCC--------ccCCCcccCCCCcccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--------CPKCNAAFGANDYHRL 258 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~--------CP~Cr~~~~~~d~~~i 258 (262)
....+.||+|...|+...+..=|-..=..=++-.+.-+... ||.|.-..-..|+..|
T Consensus 16 ~kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yAaf~sDFe~I 80 (267)
T COG1655 16 YKKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYAAFKSDFEKI 80 (267)
T ss_pred hhceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHHHhhHHHHhh
No 493
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.21 E-value=92 Score=25.93 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 4 GQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR----EKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKL 79 (262)
Q Consensus 4 ~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~----e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~ 79 (262)
+.....+...|..-++.+.....+|......+-..+. +.+-.-.....+..+.-.-...+..+..+++.-...|-.
T Consensus 18 ~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ 97 (207)
T PF05010_consen 18 VAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHK 97 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16189 80 QIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS-AADLKLHLEKYHAQLKEAQQVVTEKTSSL 158 (262)
Q Consensus 80 ~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~-~~~l~~~l~~l~~~~~~~~~~~~~~~~~l 158 (262)
.-++++..|.-++.-+..|...+..+...+....+....++..+.+.-.. ..++-.-.....+.+..++..+....-.+
T Consensus 98 ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~ 177 (207)
T PF05010_consen 98 RYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKV 177 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 159 EAEAYKTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 159 e~~~~~~~~~e~e~~~l~~~~~~~ 182 (262)
......+..-..+.+.|-+=.+.+
T Consensus 178 ~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 178 QSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=62.13 E-value=5.5 Score=26.31 Aligned_cols=19 Identities=16% Similarity=0.620 Sum_probs=0.0
Q ss_pred CCCccCCCcccC---CCCcccc
Q psy16189 240 QRKCPKCNAAFG---ANDYHRL 258 (262)
Q Consensus 240 ~~~CP~Cr~~~~---~~d~~~i 258 (262)
...||.|++++. .+.+++|
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPF 27 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPF 27 (62)
T ss_pred cccCCCCCCcccccCCCCcCCc
No 495
>KOG1814|consensus
Probab=62.12 E-value=17 Score=33.20 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHHHHHHHhccccCcccccccccccc------eec
Q psy16189 149 QVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVMMEEIREYKETLTCPSCKVKRKDA------VLT 221 (262)
Q Consensus 149 ~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~~------v~l 221 (262)
..+.......+....+++.++....+-..+...-.-. ..|..... -.||-|...+..+ ..+
T Consensus 323 ~~~~l~~~~~~~d~a~k~ele~Ryg~rvve~~vn~~lsekwl~~N~------------krCP~C~v~IEr~eGCnKM~C~ 390 (445)
T KOG1814|consen 323 KLIELYLEYLEADEARKRELEKRYGKRVVEELVNDFLSEKWLESNS------------KRCPKCKVVIERSEGCNKMHCT 390 (445)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC------------CCCCcccceeecCCCccceeec
Q ss_pred cccccccHHHHHHHhccCCCC
Q psy16189 222 KCFHVFCWDCLRTRYETRQRK 242 (262)
Q Consensus 222 ~CgH~fC~~Ci~~~~~~~~~~ 242 (262)
.|||.||+-|........+.+
T Consensus 391 ~c~~~fc~~c~~~l~~~nPYk 411 (445)
T KOG1814|consen 391 KCGTYFCWICAELLYPENPYK 411 (445)
T ss_pred cccccceeehhhhcCCCChhh
No 496
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=62.12 E-value=47 Score=22.52 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=0.0
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH
Q psy16189 2 SLGQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLA 63 (262)
Q Consensus 2 ~~~~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~ 63 (262)
++|+.-..|-|+++-|.=.+.+.+...+.+.+.-+.+...---.+.+++.|+..+......+
T Consensus 8 ~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
No 497
>KOG4787|consensus
Probab=61.95 E-value=1.6e+02 Score=28.58 Aligned_cols=173 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--------------------------------------
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFK-------------------------------------- 48 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~k-------------------------------------- 48 (262)
.....+++-.+++.+..-.+-+...|..|+..|.++|..-.+
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~ 409 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL 409 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc
Q ss_pred ----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 49 ----LMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERY-LQTVLTNVEKELHLRNQAMDLNKRKA 123 (262)
Q Consensus 49 ----l~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~-l~~~i~~lekel~~~~~~~~~~k~k~ 123 (262)
+.-.+.-+.+....++........|+..++++.....+..-.-.-.-.. |..+++...|..+.+...+....++-
T Consensus 410 ~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q 489 (852)
T KOG4787|consen 410 ELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQ 489 (852)
T ss_pred cHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 124 IESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKT 179 (262)
Q Consensus 124 ~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~ 179 (262)
....+-....-..+..++..+.=....-..+..+++..+....+++...+.|....
T Consensus 490 ~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~ 545 (852)
T KOG4787|consen 490 VRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVE 545 (852)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHh
No 498
>KOG3726|consensus
Probab=61.95 E-value=4.5 Score=39.18 Aligned_cols=37 Identities=22% Similarity=0.574 Sum_probs=0.0
Q ss_pred ccccccccccc----ceeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 207 TCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 207 ~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
+|-+|..+-.. +..+.|+-.||..|..+.-. .||.|+
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~~----~~~vC~ 696 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYAS----ISEVCG 696 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhhhc----cCcccC
No 499
>KOG1853|consensus
Probab=61.70 E-value=1e+02 Score=26.41 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 20 VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQ 99 (262)
Q Consensus 20 ~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~ 99 (262)
...+-|.+|++...-.----.|.+ ..|-+++..+.+....+......|..|+..++. +++.+-....
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~E---aelesqL~q~etrnrdl~t~nqrl~~E~e~~Ke----------k~e~q~~q~y 90 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIE---AELESQLDQLETRNRDLETRNQRLTTEQERNKE----------KQEDQRVQFY 90 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Q psy16189 100 TVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSS---LEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 100 ~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~---le~~~~~~~~~e~e~~~l~ 176 (262)
.+++.|+.++......-+.+.+.+-++.+...+|.+--....-.+..+...+...... ++.+......+-+.+.+|+
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q psy16189 177 RKTERMKKI 185 (262)
Q Consensus 177 ~~~~~~~~~ 185 (262)
.+...++..
T Consensus 171 dEardlrqe 179 (333)
T KOG1853|consen 171 DEARDLRQE 179 (333)
T ss_pred HHHHHHHHH
No 500
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=61.51 E-value=6.4 Score=31.83 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHhccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 198 EIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 198 e~~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+...-...+.||.|..++. ++.-+..+ +.||.||..+...|-.+++
T Consensus 106 e~~~~~~~y~C~~~~~r~s---------------fdeA~~~~-F~Cp~Cg~~L~~~d~s~~i 151 (176)
T COG1675 106 EKETENNYYVCPNCHVKYS---------------FDEAMELG-FTCPKCGEDLEEYDSSEEI 151 (176)
T ss_pred HhhccCCceeCCCCCCccc---------------HHHHHHhC-CCCCCCCchhhhccchHHH
Done!