Query psy16189
Match_columns 262
No_of_seqs 230 out of 1802
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:01:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.6 3.5E-16 1.2E-20 121.1 8.2 51 202-253 50-100 (138)
2 3fl2_A E3 ubiquitin-protein li 99.6 1.6E-15 5.5E-20 115.2 6.4 61 196-256 43-104 (124)
3 1t1h_A Gspef-atpub14, armadill 99.6 1.3E-15 4.4E-20 106.2 5.1 58 202-259 5-62 (78)
4 3lrq_A E3 ubiquitin-protein li 99.6 9.2E-16 3.2E-20 112.2 4.3 63 197-259 14-77 (100)
5 3ng2_A RNF4, snurf, ring finge 99.6 8E-16 2.8E-20 105.1 3.4 57 203-260 8-71 (71)
6 2xeu_A Ring finger protein 4; 99.6 1.4E-15 4.6E-20 101.8 3.3 55 205-260 3-64 (64)
7 1g25_A CDK-activating kinase a 99.6 2.2E-15 7.4E-20 101.3 4.3 57 205-261 3-64 (65)
8 2ecy_A TNF receptor-associated 99.5 3.3E-15 1.1E-19 100.7 3.8 54 202-255 12-65 (66)
9 2egp_A Tripartite motif-contai 99.5 1.8E-15 6.1E-20 105.6 2.4 60 201-260 8-73 (79)
10 2ysl_A Tripartite motif-contai 99.5 5.3E-15 1.8E-19 101.6 4.6 55 201-255 16-72 (73)
11 2ecw_A Tripartite motif-contai 99.5 1.1E-14 3.8E-19 102.8 4.8 60 201-260 15-79 (85)
12 3ztg_A E3 ubiquitin-protein li 99.5 8.7E-15 3E-19 105.2 3.6 57 201-257 9-68 (92)
13 2kre_A Ubiquitin conjugation f 99.5 1.5E-14 5E-19 105.6 4.7 57 202-259 26-82 (100)
14 1jm7_A BRCA1, breast cancer ty 99.5 1.8E-14 6.2E-19 107.2 5.2 63 197-259 13-77 (112)
15 2ct2_A Tripartite motif protei 99.5 1.6E-14 5.3E-19 102.8 4.5 59 201-259 11-75 (88)
16 2ecv_A Tripartite motif-contai 99.5 1.4E-14 4.8E-19 102.3 4.2 60 201-260 15-79 (85)
17 1z6u_A NP95-like ring finger p 99.5 1.2E-14 4.2E-19 113.9 4.0 53 201-253 74-126 (150)
18 2yur_A Retinoblastoma-binding 99.5 1.4E-14 4.8E-19 99.9 3.8 55 201-255 11-67 (74)
19 2djb_A Polycomb group ring fin 99.5 2E-14 6.8E-19 98.6 4.5 57 200-257 10-67 (72)
20 2f42_A STIP1 homology and U-bo 99.5 2E-13 6.9E-18 109.3 10.7 58 202-259 103-160 (179)
21 2kr4_A Ubiquitin conjugation f 99.5 1.6E-14 5.4E-19 102.3 3.5 56 202-258 11-66 (85)
22 2y43_A E3 ubiquitin-protein li 99.5 1.4E-14 4.9E-19 105.6 3.0 58 201-259 18-76 (99)
23 1jm7_B BARD1, BRCA1-associated 99.4 3.2E-14 1.1E-18 106.9 3.7 61 196-259 13-74 (117)
24 4ic3_A E3 ubiquitin-protein li 99.4 3.1E-14 1.1E-18 98.1 2.8 60 195-261 14-74 (74)
25 1wgm_A Ubiquitin conjugation f 99.4 7.4E-14 2.5E-18 101.5 4.6 57 202-259 19-76 (98)
26 2csy_A Zinc finger protein 183 99.4 6.1E-14 2.1E-18 98.3 4.0 49 202-251 12-60 (81)
27 1rmd_A RAG1; V(D)J recombinati 99.4 5E-14 1.7E-18 105.7 3.7 55 203-257 21-75 (116)
28 2ckl_A Polycomb group ring fin 99.4 8E-14 2.7E-18 103.2 4.6 52 201-253 11-63 (108)
29 2d8t_A Dactylidin, ring finger 99.4 4.6E-14 1.6E-18 96.5 2.5 53 203-256 13-65 (71)
30 1e4u_A Transcriptional repress 99.4 1.8E-13 6.2E-18 95.1 5.3 56 202-257 8-67 (78)
31 2ysj_A Tripartite motif-contai 99.4 9.8E-14 3.3E-18 92.5 3.7 46 201-246 16-63 (63)
32 2yho_A E3 ubiquitin-protein li 99.4 5.6E-14 1.9E-18 98.1 2.4 62 194-262 7-69 (79)
33 3hct_A TNF receptor-associated 99.4 6.4E-14 2.2E-18 105.4 2.6 57 201-257 14-70 (118)
34 2c2l_A CHIP, carboxy terminus 99.4 9.3E-14 3.2E-18 119.3 3.5 56 203-258 206-261 (281)
35 2ecg_A Baculoviral IAP repeat- 99.4 1.7E-13 5.7E-18 94.7 3.8 59 196-261 16-75 (75)
36 3l11_A E3 ubiquitin-protein li 99.4 6.2E-14 2.1E-18 105.0 1.3 48 205-252 15-62 (115)
37 2ecn_A Ring finger protein 141 99.4 1.1E-13 3.8E-18 94.2 2.3 57 201-259 11-67 (70)
38 2ckl_B Ubiquitin ligase protei 99.4 1.4E-13 4.8E-18 109.6 3.1 52 201-252 50-102 (165)
39 2ecj_A Tripartite motif-contai 99.4 2.8E-13 9.6E-18 88.6 3.7 46 201-246 11-58 (58)
40 2ea6_A Ring finger protein 4; 99.3 3.2E-13 1.1E-17 91.4 3.1 50 202-252 12-68 (69)
41 4ap4_A E3 ubiquitin ligase RNF 99.3 3.9E-13 1.3E-17 102.7 3.9 57 204-261 6-69 (133)
42 2yu4_A E3 SUMO-protein ligase 99.3 5.1E-13 1.7E-17 96.4 3.3 56 203-258 5-69 (94)
43 2ect_A Ring finger protein 126 99.3 7.4E-13 2.5E-17 92.0 3.9 55 202-257 12-69 (78)
44 1bor_A Transcription factor PM 99.3 3.2E-13 1.1E-17 87.9 1.5 47 203-253 4-50 (56)
45 3knv_A TNF receptor-associated 99.3 4.9E-13 1.7E-17 103.6 2.4 52 200-251 26-77 (141)
46 2vje_A E3 ubiquitin-protein li 99.3 1.1E-12 3.8E-17 87.7 3.7 54 205-261 8-64 (64)
47 1iym_A EL5; ring-H2 finger, ub 99.3 1.2E-12 4.2E-17 84.6 3.8 49 202-251 2-54 (55)
48 1chc_A Equine herpes virus-1 r 99.3 9.9E-13 3.4E-17 88.9 3.3 48 204-252 4-52 (68)
49 2ecm_A Ring finger and CHY zin 99.3 1.2E-12 4.2E-17 84.5 3.6 46 205-251 5-54 (55)
50 4ap4_A E3 ubiquitin ligase RNF 99.3 7.1E-13 2.4E-17 101.2 2.4 56 204-260 71-133 (133)
51 2vje_B MDM4 protein; proto-onc 99.3 1.6E-12 5.3E-17 86.7 3.5 54 205-261 7-63 (63)
52 2l0b_A E3 ubiquitin-protein li 99.3 2.2E-12 7.6E-17 92.4 4.1 48 204-252 39-89 (91)
53 3hcs_A TNF receptor-associated 99.3 1.1E-12 3.9E-17 104.8 2.6 57 201-257 14-70 (170)
54 2y1n_A E3 ubiquitin-protein li 99.3 3.3E-12 1.1E-16 113.5 5.6 58 200-257 327-384 (389)
55 2kiz_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 86.4 3.8 49 203-252 12-63 (69)
56 1x4j_A Ring finger protein 38; 99.2 3E-12 1E-16 88.3 3.0 48 204-252 22-72 (75)
57 1v87_A Deltex protein 2; ring- 99.2 7.2E-12 2.5E-16 93.4 4.2 48 205-252 25-94 (114)
58 2ep4_A Ring finger protein 24; 99.2 8.7E-12 3E-16 85.6 4.3 50 202-252 12-64 (74)
59 2ea5_A Cell growth regulator w 99.2 9.5E-12 3.2E-16 84.1 3.9 52 204-262 14-66 (68)
60 3htk_C E3 SUMO-protein ligase 99.2 6.8E-12 2.3E-16 105.3 3.1 58 201-258 177-238 (267)
61 3t6p_A Baculoviral IAP repeat- 99.1 1.1E-11 3.6E-16 109.5 2.5 61 194-261 284-345 (345)
62 2ecl_A Ring-box protein 2; RNF 99.1 3.8E-11 1.3E-15 84.0 3.7 49 205-254 15-78 (81)
63 2bay_A PRE-mRNA splicing facto 99.1 3.9E-11 1.3E-15 79.2 3.2 56 205-261 3-59 (61)
64 3dpl_R Ring-box protein 1; ubi 99.0 3.3E-10 1.1E-14 83.2 4.2 47 205-252 37-101 (106)
65 1wim_A KIAA0161 protein; ring 98.9 1.5E-10 5.2E-15 83.2 1.0 53 204-256 4-70 (94)
66 3na7_A HP0958; flagellar bioge 98.9 2.1E-06 7.2E-11 72.7 25.4 138 17-159 12-149 (256)
67 4a0k_B E3 ubiquitin-protein li 98.8 8.1E-10 2.8E-14 82.3 0.0 46 206-252 49-112 (117)
68 3vk6_A E3 ubiquitin-protein li 98.7 1.3E-08 4.5E-13 72.2 3.9 46 206-251 2-48 (101)
69 2d8s_A Cellular modulator of i 98.6 3.3E-08 1.1E-12 68.6 3.7 49 205-253 15-71 (80)
70 1c1g_A Tropomyosin; contractIl 98.5 0.00043 1.5E-08 57.6 28.3 34 13-46 10-43 (284)
71 1c1g_A Tropomyosin; contractIl 98.3 0.00099 3.4E-08 55.4 28.8 42 15-56 5-46 (284)
72 2ct0_A Non-SMC element 1 homol 98.2 2.5E-06 8.7E-11 58.0 5.1 48 205-252 15-64 (74)
73 3na7_A HP0958; flagellar bioge 98.1 0.0019 6.5E-08 54.4 23.1 214 34-251 8-233 (256)
74 1vyx_A ORF K3, K3RING; zinc-bi 97.9 9.5E-06 3.3E-10 52.8 3.9 49 204-252 5-59 (60)
75 2v71_A Nuclear distribution pr 97.8 0.0091 3.1E-07 47.5 21.9 131 7-150 8-138 (189)
76 3k1l_B Fancl; UBC, ring, RWD, 97.7 4.7E-06 1.6E-10 72.4 0.4 50 204-253 307-374 (381)
77 1i84_S Smooth muscle myosin he 97.7 0.00018 6.2E-09 73.1 11.8 23 10-32 858-880 (1184)
78 1i84_S Smooth muscle myosin he 97.6 0.00026 8.8E-09 72.0 11.0 35 9-43 864-898 (1184)
79 1joc_A EEA1, early endosomal a 97.2 0.0051 1.7E-07 45.9 10.8 30 206-235 70-103 (125)
80 2eqb_B RAB guanine nucleotide 97.0 0.038 1.3E-06 38.8 13.1 90 21-110 3-93 (97)
81 3nw0_A Non-structural maintena 97.0 0.00076 2.6E-08 56.2 4.8 49 205-253 180-230 (238)
82 2dfs_A Myosin-5A; myosin-V, in 96.9 0.089 3E-06 52.9 20.5 14 38-51 936-949 (1080)
83 2jun_A Midline-1; B-BOX, TRIM, 96.9 0.00055 1.9E-08 49.0 3.4 32 205-236 3-37 (101)
84 2dfs_A Myosin-5A; myosin-V, in 96.7 0.2 6.9E-06 50.4 20.7 17 30-46 921-937 (1080)
85 3o0z_A RHO-associated protein 96.6 0.17 5.8E-06 39.3 22.1 100 16-115 13-112 (168)
86 3m62_A Ubiquitin conjugation f 96.6 0.003 1E-07 61.9 6.3 59 199-258 885-944 (968)
87 2fxo_A Myosin heavy chain, car 96.5 0.16 5.5E-06 37.8 19.2 84 100-183 41-124 (129)
88 2efr_A General control protein 96.5 0.19 6.5E-06 38.6 25.0 104 49-159 26-129 (155)
89 2cs3_A Protein C14ORF4, MY039 96.4 0.0012 4.1E-08 44.5 1.6 36 203-238 13-52 (93)
90 3vkg_A Dynein heavy chain, cyt 96.0 2.6 9E-05 47.0 26.8 65 121-185 2014-2078(3245)
91 3oja_B Anopheles plasmodium-re 95.9 0.14 4.7E-06 47.8 13.9 25 91-115 507-531 (597)
92 3vkg_A Dynein heavy chain, cyt 95.8 3.1 0.00011 46.4 29.1 50 126-175 2033-2082(3245)
93 3oja_B Anopheles plasmodium-re 95.6 0.32 1.1E-05 45.3 15.2 45 139-183 534-578 (597)
94 3tnu_A Keratin, type I cytoske 95.6 0.49 1.7E-05 35.3 13.1 46 132-177 81-126 (131)
95 3tnu_B Keratin, type II cytosk 95.6 0.49 1.7E-05 35.1 14.0 45 132-176 79-123 (129)
96 2fxo_A Myosin heavy chain, car 95.5 0.51 1.7E-05 35.1 19.4 80 38-117 14-93 (129)
97 2v71_A Nuclear distribution pr 95.4 0.77 2.6E-05 36.4 22.1 30 8-37 16-45 (189)
98 3o0z_A RHO-associated protein 95.1 0.89 3.1E-05 35.2 22.0 32 89-120 51-82 (168)
99 3hnw_A Uncharacterized protein 94.7 0.74 2.5E-05 34.7 11.9 45 105-149 87-131 (138)
100 3u1c_A Tropomyosin alpha-1 cha 94.7 0.76 2.6E-05 32.6 16.3 50 132-181 48-97 (101)
101 3tnu_B Keratin, type II cytosk 94.7 0.5 1.7E-05 35.1 10.8 88 95-182 10-101 (129)
102 2ocy_A RAB guanine nucleotide 94.7 1.1 3.7E-05 34.3 16.5 46 36-81 50-95 (154)
103 1z60_A TFIIH basal transcripti 94.4 0.035 1.2E-06 35.5 3.3 41 206-247 16-59 (59)
104 3i2d_A E3 SUMO-protein ligase 94.3 0.022 7.7E-07 50.0 3.0 55 201-255 245-303 (371)
105 3tnu_A Keratin, type I cytoske 94.2 0.4 1.4E-05 35.7 9.4 88 95-182 12-103 (131)
106 3u59_A Tropomyosin beta chain; 94.1 1 3.6E-05 31.8 16.1 93 68-181 5-97 (101)
107 2e7s_A RAB guanine nucleotide 93.9 1.4 4.8E-05 32.8 11.5 87 24-110 26-113 (135)
108 3u1c_A Tropomyosin alpha-1 cha 93.8 1.2 4.2E-05 31.5 15.5 20 70-89 7-26 (101)
109 4fo9_A E3 SUMO-protein ligase 93.4 0.056 1.9E-06 47.3 3.8 55 201-255 211-269 (360)
110 3ghg_A Fibrinogen alpha chain; 93.1 2.6 8.8E-05 38.4 14.0 43 132-174 114-156 (562)
111 3hnw_A Uncharacterized protein 93.0 1.6 5.4E-05 32.8 10.8 56 99-154 74-129 (138)
112 1weo_A Cellulose synthase, cat 92.9 0.12 4E-06 35.6 3.9 47 205-251 16-69 (93)
113 3u59_A Tropomyosin beta chain; 92.9 1.7 5.9E-05 30.6 15.0 59 59-117 10-68 (101)
114 2zet_C Melanophilin; complex, 92.7 0.17 5.9E-06 38.9 5.2 44 205-248 68-116 (153)
115 2ko5_A Ring finger protein Z; 92.5 0.13 4.3E-06 35.8 3.8 46 205-253 28-74 (99)
116 2efr_A General control protein 92.2 3 0.0001 31.9 25.1 104 70-173 26-129 (155)
117 1y02_A CARP2, FYVE-ring finger 91.5 0.019 6.7E-07 42.3 -1.4 42 206-248 20-65 (120)
118 3mpx_A FYVE, rhogef and PH dom 91.2 0.039 1.3E-06 49.6 0.0 45 206-250 376-430 (434)
119 3mq7_A Bone marrow stromal ant 90.7 3.5 0.00012 29.6 14.6 78 102-182 27-104 (121)
120 3cvf_A Homer-3, homer protein 90.6 2.8 9.4E-05 28.2 10.3 64 49-112 4-67 (79)
121 3oja_A Leucine-rich immune mol 90.1 10 0.00036 34.1 19.0 14 11-24 323-336 (487)
122 2fiy_A Protein FDHE homolog; F 90.0 0.061 2.1E-06 46.3 0.2 45 204-249 181-231 (309)
123 2xqn_T Testin, TESS; metal-bin 90.0 0.31 1.1E-05 35.7 4.1 45 206-253 31-76 (126)
124 1zbd_B Rabphilin-3A; G protein 89.7 0.82 2.8E-05 34.2 6.2 45 204-248 54-106 (134)
125 2lbm_A Transcriptional regulat 89.5 0.31 1E-05 36.9 3.7 44 205-248 63-116 (142)
126 1deq_A Fibrinogen (alpha chain 89.5 10 0.00034 33.1 15.8 95 13-110 64-158 (390)
127 1f5n_A Interferon-induced guan 89.4 14 0.00047 34.5 18.8 93 12-107 434-533 (592)
128 1m3v_A FLIN4, fusion of the LI 89.1 0.27 9.1E-06 36.0 3.1 49 206-255 33-84 (122)
129 3i00_A HIP-I, huntingtin-inter 89.1 2.9 9.8E-05 30.6 8.5 68 10-80 16-83 (120)
130 1ic2_A Tropomyosin alpha chain 89.0 3.8 0.00013 27.6 10.6 12 164-175 49-60 (81)
131 2v4h_A NF-kappa-B essential mo 88.7 5 0.00017 28.6 13.6 39 147-185 67-105 (110)
132 2jee_A YIIU; FTSZ, septum, coi 88.6 4.1 0.00014 27.5 11.8 28 88-115 8-35 (81)
133 3swk_A Vimentin; cytoskeleton, 88.6 4.4 0.00015 27.7 9.2 69 132-200 11-80 (86)
134 3ghg_A Fibrinogen alpha chain; 88.0 15 0.00053 33.4 14.1 9 75-83 60-68 (562)
135 1deq_A Fibrinogen (alpha chain 87.6 14 0.00047 32.3 15.5 19 154-172 139-157 (390)
136 2ocy_A RAB guanine nucleotide 87.5 8 0.00027 29.5 20.3 20 37-56 13-32 (154)
137 3oja_A Leucine-rich immune mol 87.3 16 0.00055 32.8 15.8 12 67-78 369-380 (487)
138 2gmg_A Hypothetical protein PF 86.9 0.29 1E-05 34.8 1.9 32 215-252 65-96 (105)
139 2jtn_A LIM domain-binding prot 86.7 0.56 1.9E-05 36.8 3.8 46 206-254 88-133 (182)
140 2rgt_A Fusion of LIM/homeobox 86.5 0.72 2.5E-05 35.7 4.3 46 206-254 34-79 (169)
141 2cup_A Skeletal muscle LIM-pro 86.1 0.5 1.7E-05 33.0 2.9 46 206-254 34-80 (101)
142 3t7l_A Zinc finger FYVE domain 85.2 0.36 1.2E-05 33.5 1.8 45 206-250 21-74 (90)
143 2yw8_A RUN and FYVE domain-con 85.0 0.33 1.1E-05 33.0 1.4 46 205-250 19-73 (82)
144 1vfy_A Phosphatidylinositol-3- 84.8 0.34 1.2E-05 32.2 1.4 30 205-234 11-44 (73)
145 4gkw_A Spindle assembly abnorm 84.8 9.7 0.00033 28.0 21.3 23 87-109 47-69 (167)
146 1vd4_A Transcription initiatio 84.7 0.08 2.7E-06 33.6 -1.8 39 205-253 14-52 (62)
147 2i1j_A Moesin; FERM, coiled-co 84.5 2.6 9E-05 39.3 7.7 25 61-85 331-355 (575)
148 1z2q_A LM5-1; membrane protein 84.3 0.39 1.3E-05 32.8 1.6 46 205-250 21-77 (84)
149 3ql9_A Transcriptional regulat 84.2 0.84 2.9E-05 33.9 3.4 44 205-248 57-110 (129)
150 2v66_B Nuclear distribution pr 84.1 9.6 0.00033 27.3 16.1 50 98-147 33-82 (111)
151 2jr6_A UPF0434 protein NMA0874 84.1 0.2 6.8E-06 32.9 -0.0 43 202-261 5-47 (68)
152 2xjy_A Rhombotin-2; oncoprotei 84.0 0.93 3.2E-05 33.3 3.7 47 206-253 30-79 (131)
153 1dvp_A HRS, hepatocyte growth 83.9 0.27 9.4E-06 40.0 0.7 32 204-235 160-195 (220)
154 2v4h_A NF-kappa-B essential mo 83.2 10 0.00035 27.0 10.6 33 9-41 24-56 (110)
155 1yuz_A Nigerythrin; rubrythrin 82.8 0.86 2.9E-05 36.6 3.3 24 219-250 173-196 (202)
156 3zyq_A Hepatocyte growth facto 82.4 0.36 1.2E-05 39.5 0.9 46 205-250 164-220 (226)
157 1wfk_A Zinc finger, FYVE domai 82.3 0.41 1.4E-05 33.1 1.0 46 205-250 9-64 (88)
158 3pwf_A Rubrerythrin; non heme 82.2 0.53 1.8E-05 36.8 1.7 24 219-250 140-163 (170)
159 1x4u_A Zinc finger, FYVE domai 81.9 0.47 1.6E-05 32.4 1.2 30 206-235 15-48 (84)
160 1rut_X Flinc4, fusion protein 81.1 0.78 2.7E-05 36.2 2.4 47 206-253 33-82 (188)
161 3uk3_C Zinc finger protein 217 81.0 0.77 2.6E-05 27.7 1.9 42 205-253 4-45 (57)
162 2jrp_A Putative cytoplasmic pr 80.9 0.14 4.7E-06 34.8 -1.8 10 206-215 3-12 (81)
163 2jne_A Hypothetical protein YF 80.6 0.13 4.5E-06 36.0 -2.0 40 206-251 33-72 (101)
164 2jny_A Uncharacterized BCR; st 80.3 0.36 1.2E-05 31.6 0.2 43 202-261 7-49 (67)
165 2hf1_A Tetraacyldisaccharide-1 80.1 0.21 7.3E-06 32.8 -1.0 43 202-261 5-47 (68)
166 3qh9_A Liprin-beta-2; coiled-c 79.8 11 0.00038 25.2 9.2 65 22-93 11-75 (81)
167 3s4r_A Vimentin; alpha-helix, 79.4 13 0.00044 25.7 12.0 9 168-176 82-90 (93)
168 3q8t_A Beclin-1; autophagy, AT 79.3 13 0.00046 25.8 15.5 32 85-116 10-41 (96)
169 2js4_A UPF0434 protein BB2007; 79.2 0.27 9.2E-06 32.5 -0.8 43 202-261 5-47 (70)
170 3iox_A AGI/II, PA; alpha helix 78.9 37 0.0013 30.7 14.4 22 9-30 9-30 (497)
171 4ayb_P DNA-directed RNA polyme 78.9 0.28 9.7E-06 29.4 -0.6 28 220-250 6-33 (48)
172 2ctu_A Zinc finger protein 483 78.7 0.58 2E-05 29.8 0.8 35 205-253 18-52 (73)
173 1lko_A Rubrerythrin all-iron(I 78.6 0.62 2.1E-05 37.1 1.0 9 241-249 172-180 (191)
174 3vth_A Hydrogenase maturation 78.5 0.75 2.6E-05 44.4 1.7 24 227-250 163-193 (761)
175 2eps_A POZ-, at HOOK-, and zin 78.2 0.78 2.7E-05 27.7 1.2 41 205-252 12-53 (54)
176 1x61_A Thyroid receptor intera 77.9 2.4 8.1E-05 27.4 3.7 31 206-236 34-65 (72)
177 2v66_B Nuclear distribution pr 77.7 17 0.00057 26.0 16.7 13 70-82 40-52 (111)
178 4gzn_C ZFP-57, zinc finger pro 77.7 0.85 2.9E-05 28.8 1.3 42 205-253 4-45 (60)
179 1x8y_A Lamin A/C; structural p 77.6 14 0.00048 25.1 9.9 50 131-180 31-80 (86)
180 3efg_A Protein SLYX homolog; x 77.0 12 0.0004 25.0 6.9 40 99-138 13-52 (78)
181 2pv0_B DNA (cytosine-5)-methyl 76.5 1.9 6.6E-05 38.0 3.6 44 206-249 94-148 (386)
182 2pk7_A Uncharacterized protein 76.3 0.41 1.4E-05 31.5 -0.5 43 202-261 5-47 (69)
183 1iml_A CRIP, cysteine rich int 76.2 2.5 8.6E-05 27.6 3.4 42 206-250 28-71 (76)
184 1wil_A KIAA1045 protein; ring 76.1 2.8 9.4E-05 28.5 3.5 32 203-235 13-47 (89)
185 4h22_A Leucine-rich repeat fli 75.1 19 0.00064 25.3 12.0 18 66-83 24-41 (103)
186 1bbo_A Human enhancer-binding 74.6 0.7 2.4E-05 27.9 0.3 41 206-253 2-42 (57)
187 3c5k_A HD6, histone deacetylas 74.5 1.1 3.7E-05 32.3 1.3 25 205-229 24-48 (109)
188 1b8t_A Protein (CRP1); LIM dom 74.3 2.7 9.2E-05 33.1 3.7 33 206-238 35-68 (192)
189 2yt9_A Zinc finger-containing 74.3 3.2 0.00011 27.8 3.7 15 239-253 64-78 (95)
190 2l3k_A Rhombotin-2, linker, LI 74.3 2.7 9.2E-05 30.5 3.5 42 206-250 37-80 (123)
191 3a1b_A DNA (cytosine-5)-methyl 74.1 2.6 8.8E-05 32.4 3.4 43 206-248 80-133 (159)
192 2i1j_A Moesin; FERM, coiled-co 73.8 6.7 0.00023 36.5 6.8 80 14-93 333-412 (575)
193 2b9c_A Striated-muscle alpha t 73.8 26 0.00089 26.3 17.0 76 91-166 43-118 (147)
194 3iox_A AGI/II, PA; alpha helix 73.5 53 0.0018 29.7 15.2 58 96-153 5-66 (497)
195 3jsv_C NF-kappa-B essential mo 72.9 20 0.0007 24.7 10.5 39 147-185 45-83 (94)
196 3mov_A Lamin-B1; LMNB1, B-type 72.6 21 0.00072 24.7 8.4 45 133-177 42-86 (95)
197 2k16_A Transcription initiatio 72.2 1.1 3.6E-05 29.7 0.7 48 205-252 18-71 (75)
198 2xzr_A Immunoglobulin-binding 71.7 22 0.00075 24.6 16.8 75 103-177 30-104 (114)
199 2yy0_A C-MYC-binding protein; 71.0 9.1 0.00031 23.5 4.8 36 5-40 15-50 (53)
200 2m0e_A Zinc finger and BTB dom 70.8 2.4 8.2E-05 20.8 1.9 14 240-253 2-15 (29)
201 2lvu_A Zinc finger and BTB dom 73.2 0.89 3.1E-05 22.3 0.0 13 241-253 3-15 (26)
202 2kdx_A HYPA, hydrogenase/ureas 69.8 1.8 6.2E-05 31.4 1.6 25 219-250 75-100 (119)
203 1gk4_A Vimentin; intermediate 69.7 22 0.00077 23.9 12.0 46 133-178 31-76 (84)
204 2lri_C Autoimmune regulator; Z 69.7 3.8 0.00013 26.5 2.9 45 205-249 12-59 (66)
205 2w83_C C-JUN-amino-terminal ki 69.6 21 0.00073 23.5 10.3 43 130-172 32-74 (77)
206 2lv2_A Insulinoma-associated p 69.5 0.69 2.4E-05 31.5 -0.7 41 206-253 29-69 (85)
207 2adr_A ADR1; transcription reg 69.1 1.2 4E-05 27.2 0.4 41 206-253 3-43 (60)
208 4emc_A Monopolin complex subun 69.0 39 0.0013 26.4 9.9 12 42-53 18-29 (190)
209 2ct7_A Ring finger protein 31; 68.9 0.64 2.2E-05 31.8 -1.0 29 207-235 27-61 (86)
210 1b8t_A Protein (CRP1); LIM dom 68.9 4.8 0.00017 31.6 4.1 44 206-252 143-187 (192)
211 1m1j_A Fibrinogen alpha subuni 68.9 65 0.0022 28.8 16.3 24 150-173 133-156 (491)
212 1x79_B RAB GTPase binding effe 68.8 29 0.00099 24.8 14.4 12 136-147 60-71 (112)
213 2xdj_A Uncharacterized protein 68.8 24 0.00081 23.8 9.8 43 57-99 19-61 (83)
214 2kmk_A Zinc finger protein GFI 68.8 2.8 9.4E-05 27.1 2.3 15 239-253 56-70 (82)
215 1f62_A Transcription factor WS 68.6 2.4 8.1E-05 25.6 1.7 42 207-248 2-49 (51)
216 1gk4_A Vimentin; intermediate 68.0 25 0.00084 23.7 10.9 72 10-81 2-77 (84)
217 1x6e_A Zinc finger protein 24; 67.6 1.6 5.4E-05 27.9 0.8 42 205-253 14-55 (72)
218 2lcq_A Putative toxin VAPC6; P 67.4 1.3 4.6E-05 34.0 0.5 26 219-251 134-159 (165)
219 2l5u_A Chromodomain-helicase-D 67.4 2.3 8E-05 26.9 1.6 42 205-248 11-57 (61)
220 1ard_A Yeast transcription fac 67.3 2.6 9E-05 20.8 1.5 14 240-253 2-15 (29)
221 2d8v_A Zinc finger FYVE domain 67.2 2.2 7.5E-05 27.5 1.3 31 205-236 8-39 (67)
222 3mq9_A Bone marrow stromal ant 67.2 68 0.0023 28.4 16.7 6 151-156 445-450 (471)
223 2ee8_A Protein ODD-skipped-rel 66.3 11 0.00038 25.6 5.2 13 240-252 73-85 (106)
224 2d8x_A Protein pinch; LIM doma 66.3 4 0.00014 26.1 2.6 38 206-252 6-43 (70)
225 2lce_A B-cell lymphoma 6 prote 66.1 2.5 8.6E-05 27.0 1.6 43 204-253 16-58 (74)
226 3s4r_A Vimentin; alpha-helix, 66.0 29 0.001 23.8 13.3 14 167-180 74-87 (93)
227 2jmo_A Parkin; IBR, E3 ligase, 65.7 0.54 1.9E-05 31.8 -1.9 32 205-236 25-69 (80)
228 2l43_A N-teminal domain from h 65.7 1.7 5.8E-05 29.9 0.7 53 203-255 23-81 (88)
229 3ttc_A HYPF, transcriptional r 65.4 4.5 0.00015 38.3 3.7 24 227-250 69-99 (657)
230 3o36_A Transcription intermedi 65.3 1.7 5.8E-05 34.1 0.6 46 205-250 4-52 (184)
231 6rxn_A Rubredoxin; electron tr 65.2 2 6.8E-05 25.8 0.8 10 240-249 30-39 (46)
232 3jsv_C NF-kappa-B essential mo 65.1 31 0.0011 23.8 9.8 7 104-110 44-50 (94)
233 1nyp_A Pinch protein; LIM doma 64.9 4.1 0.00014 25.7 2.4 38 206-252 6-43 (66)
234 1paa_A Yeast transcription fac 64.8 3.4 0.00012 20.5 1.7 14 240-253 2-15 (30)
235 3u5n_A E3 ubiquitin-protein li 64.4 1.2 4.2E-05 35.7 -0.3 46 205-250 7-55 (207)
236 2gqj_A Zinc finger protein KIA 64.4 1.4 4.9E-05 30.3 0.1 44 204-253 23-67 (98)
237 2apo_B Ribosome biogenesis pro 64.3 2.2 7.7E-05 27.1 1.0 18 241-258 19-36 (60)
238 2drp_A Protein (tramtrack DNA- 64.3 2.7 9.1E-05 26.1 1.4 42 205-253 10-53 (66)
239 1llm_C Chimera of ZIF23-GCN4; 64.2 2.5 8.4E-05 28.1 1.3 41 205-252 3-43 (88)
240 2dar_A PDZ and LIM domain prot 64.1 4.9 0.00017 27.2 2.8 38 206-252 26-63 (90)
241 2lt7_A Transcriptional regulat 64.1 3.3 0.00011 30.5 2.1 11 241-251 79-89 (133)
242 4g9i_A Hydrogenase maturation 64.0 4.7 0.00016 39.0 3.6 25 227-251 158-189 (772)
243 3cve_A Homer protein homolog 1 63.6 28 0.00097 22.8 11.0 35 57-91 6-40 (72)
244 2ctd_A Zinc finger protein 512 63.4 4.5 0.00015 27.8 2.5 41 204-252 33-74 (96)
245 2dmd_A Zinc finger protein 64, 63.3 4.7 0.00016 26.9 2.6 14 240-253 64-77 (96)
246 1gh9_A 8.3 kDa protein (gene M 62.9 0.8 2.7E-05 30.3 -1.4 18 241-260 22-39 (71)
247 1p7a_A BF3, BKLF, kruppel-like 62.9 3.2 0.00011 22.1 1.4 15 239-253 10-24 (37)
248 1m1j_A Fibrinogen alpha subuni 62.8 86 0.0029 28.1 15.9 19 30-48 58-76 (491)
249 3mjh_B Early endosome antigen 62.8 1 3.5E-05 25.2 -0.8 14 205-218 5-18 (34)
250 2k0a_A PRE-mRNA-splicing facto 62.8 6.4 0.00022 27.7 3.1 41 206-253 30-70 (109)
251 1erd_A Pheromone ER-2; NMR {Eu 62.6 1.7 5.9E-05 23.9 0.2 18 220-237 9-26 (40)
252 2wbt_A B-129; zinc finger; 2.7 62.3 4.9 0.00017 28.7 2.7 39 204-253 73-113 (129)
253 3mq7_A Bone marrow stromal ant 62.2 41 0.0014 24.1 14.8 39 26-64 21-59 (121)
254 1v6g_A Actin binding LIM prote 62.2 5.1 0.00017 26.4 2.6 39 206-253 16-54 (81)
255 2kvh_A Zinc finger and BTB dom 61.8 2.3 7.9E-05 20.8 0.6 14 240-253 3-16 (27)
256 1klr_A Zinc finger Y-chromosom 61.4 4.6 0.00016 19.8 1.8 14 240-253 2-15 (30)
257 2lv9_A Histone-lysine N-methyl 61.4 2.5 8.6E-05 29.6 0.9 43 205-248 28-75 (98)
258 3cl3_D NF-kappa-B essential mo 61.3 38 0.0013 24.7 7.1 30 98-127 60-89 (130)
259 2e72_A POGO transposable eleme 61.1 3 0.0001 25.1 1.0 15 239-253 11-25 (49)
260 2yt5_A Metal-response element- 61.1 1.3 4.5E-05 28.4 -0.6 47 204-250 5-62 (66)
261 2a20_A Regulating synaptic mem 60.7 3 0.0001 26.2 1.1 36 204-251 8-44 (62)
262 1a1h_A QGSR zinc finger peptid 60.6 2 6.8E-05 28.5 0.2 16 238-253 60-75 (90)
263 2m0f_A Zinc finger and BTB dom 60.5 2.4 8.1E-05 20.9 0.5 13 240-252 2-14 (29)
264 1wyh_A SLIM 2, skeletal muscle 60.3 6.1 0.00021 25.2 2.7 38 206-252 6-45 (72)
265 2w6b_A RHO guanine nucleotide 60.2 27 0.00092 21.4 7.6 39 136-174 11-49 (56)
266 3gox_A Restriction endonucleas 60.0 6.5 0.00022 31.0 3.1 47 206-252 76-149 (200)
267 3cvf_A Homer-3, homer protein 59.9 36 0.0012 22.7 9.2 10 98-107 25-34 (79)
268 1rik_A E6APC1 peptide; E6-bind 59.9 2.8 9.5E-05 20.7 0.7 13 241-253 3-15 (29)
269 2e6r_A Jumonji/ARID domain-con 59.6 0.96 3.3E-05 31.4 -1.6 46 204-249 15-66 (92)
270 2uzg_A Ubiquitin carboxyl-term 59.5 3.8 0.00013 28.6 1.6 26 205-230 25-53 (97)
271 1l8d_A DNA double-strand break 59.4 42 0.0014 23.4 11.9 14 98-111 29-42 (112)
272 2lvr_A Zinc finger and BTB dom 63.8 1.9 6.6E-05 21.5 0.0 12 241-252 4-15 (30)
273 2epq_A POZ-, at HOOK-, and zin 59.3 4.9 0.00017 22.6 1.8 36 205-247 10-45 (45)
274 1wyh_A SLIM 2, skeletal muscle 59.2 9 0.00031 24.4 3.3 32 206-237 34-66 (72)
275 1mm2_A MI2-beta; PHD, zinc fin 59.0 2.5 8.5E-05 26.8 0.5 46 205-250 9-57 (61)
276 2xv5_A Lamin-A/C; structural p 58.7 36 0.0012 22.4 8.3 49 130-178 7-55 (74)
277 2kvf_A Zinc finger and BTB dom 58.7 2.7 9.1E-05 20.7 0.5 13 240-252 3-15 (28)
278 1xwh_A Autoimmune regulator; P 58.1 1.7 5.7E-05 28.1 -0.5 51 204-254 7-60 (66)
279 2cur_A Skeletal muscle LIM-pro 58.1 5.6 0.00019 25.3 2.1 15 206-220 6-20 (69)
280 2d8z_A Four and A half LIM dom 58.1 8 0.00027 24.5 2.9 14 207-220 7-20 (70)
281 1wig_A KIAA1808 protein; LIM d 58.1 7.3 0.00025 25.2 2.7 37 206-251 6-42 (73)
282 1x5w_A Zinc finger protein 64, 57.9 2.4 8.1E-05 26.8 0.2 42 205-253 9-50 (70)
283 2dlq_A GLI-kruppel family memb 57.7 4.3 0.00015 28.5 1.7 13 240-252 66-78 (124)
284 1wle_A Seryl-tRNA synthetase; 57.5 1.1E+02 0.0038 27.7 11.4 22 57-78 76-97 (501)
285 1rim_A E6APC2 peptide; E6-bind 57.4 5.4 0.00019 20.8 1.7 14 240-253 2-15 (33)
286 2cot_A Zinc finger protein 435 57.4 3.4 0.00012 26.5 1.0 43 204-253 17-59 (77)
287 2kvg_A Zinc finger and BTB dom 57.3 2.2 7.5E-05 21.1 -0.0 14 240-253 3-16 (27)
288 1znf_A 31ST zinc finger from X 57.3 4.6 0.00016 19.4 1.3 13 241-253 2-14 (27)
289 2wbs_A Krueppel-like factor 4; 57.2 8.8 0.0003 25.0 3.1 15 239-253 64-78 (89)
290 4etp_A Kinesin-like protein KA 56.5 45 0.0015 29.4 8.4 45 130-174 12-56 (403)
291 2lvt_A Zinc finger and BTB dom 61.1 2.4 8E-05 21.1 0.0 12 241-252 3-14 (29)
292 2ct1_A Transcriptional repress 56.2 4.9 0.00017 25.7 1.6 43 205-253 15-58 (77)
293 1lv3_A Hypothetical protein YA 55.7 3.7 0.00013 26.7 0.9 11 241-251 10-20 (68)
294 2d9h_A Zinc finger protein 692 55.2 4.3 0.00015 26.1 1.2 42 205-253 7-51 (78)
295 2cor_A Pinch protein; LIM doma 55.2 7.5 0.00026 25.6 2.4 38 206-252 16-53 (79)
296 2elr_A Zinc finger protein 406 55.1 5.4 0.00018 20.9 1.4 15 239-253 8-22 (36)
297 2cu8_A Cysteine-rich protein 2 54.6 8.5 0.00029 24.9 2.6 38 206-252 10-48 (76)
298 3nmd_A CGMP dependent protein 54.6 42 0.0014 21.9 6.9 6 173-178 57-62 (72)
299 1x6a_A LIMK-2, LIM domain kina 54.5 7.7 0.00026 25.5 2.4 37 206-251 16-52 (81)
300 1x4k_A Skeletal muscle LIM-pro 54.5 12 0.00041 23.8 3.3 11 206-216 6-16 (72)
301 4h22_A Leucine-rich repeat fli 54.4 53 0.0018 23.0 11.5 35 59-93 10-44 (103)
302 2ebt_A Krueppel-like factor 5; 54.0 15 0.00052 24.4 4.0 15 239-253 74-88 (100)
303 2dlo_A Thyroid receptor-intera 53.7 7.7 0.00026 25.5 2.3 37 206-251 16-52 (81)
304 3he5_A Synzip1; heterodimeric 53.7 29 0.001 19.8 7.1 27 63-89 8-34 (49)
305 1x68_A FHL5 protein; four-and- 53.6 9.9 0.00034 24.6 2.8 12 206-217 6-17 (76)
306 3iv1_A Tumor susceptibility ge 53.5 47 0.0016 22.1 11.2 29 61-89 14-42 (78)
307 1wev_A Riken cDNA 1110020M19; 53.3 2.2 7.4E-05 29.3 -0.6 47 205-251 16-74 (88)
308 2dq0_A Seryl-tRNA synthetase; 53.2 94 0.0032 27.8 10.1 32 51-82 31-62 (455)
309 2g45_A Ubiquitin carboxyl-term 53.0 4.9 0.00017 29.7 1.3 25 206-230 35-59 (129)
310 2kfq_A FP1; protein, de novo p 53.0 3 0.0001 21.6 0.1 11 241-251 3-13 (32)
311 1x64_A Alpha-actinin-2 associa 52.8 9.6 0.00033 25.6 2.7 39 205-252 25-63 (89)
312 1x4l_A Skeletal muscle LIM-pro 52.8 9.5 0.00033 24.3 2.6 12 206-217 6-17 (72)
313 2cor_A Pinch protein; LIM doma 52.6 8 0.00027 25.5 2.2 32 206-237 42-73 (79)
314 2dar_A PDZ and LIM domain prot 52.6 13 0.00043 25.1 3.3 32 206-237 52-84 (90)
315 1wd2_A Ariadne-1 protein homol 52.3 8.6 0.00029 24.2 2.2 34 204-237 5-46 (60)
316 4gkw_A Spindle assembly abnorm 52.2 67 0.0023 23.5 20.7 40 49-88 41-83 (167)
317 3a7o_A Autophagy protein 16; c 52.1 45 0.0016 21.6 9.0 21 73-93 19-39 (75)
318 2elp_A Zinc finger protein 406 52.1 4.4 0.00015 21.6 0.7 15 239-253 8-22 (37)
319 2vrw_B P95VAV, VAV1, proto-onc 52.0 7.3 0.00025 34.3 2.5 30 205-234 357-391 (406)
320 2ku3_A Bromodomain-containing 51.9 5.2 0.00018 26.2 1.2 46 204-249 15-66 (71)
321 1fp0_A KAP-1 corepressor; PHD 51.9 4.6 0.00016 27.7 0.9 45 205-249 25-72 (88)
322 2no2_A HIP-I, huntingtin-inter 51.6 61 0.0021 22.9 15.5 27 52-78 16-42 (107)
323 1yc5_A NAD-dependent deacetyla 51.6 7.7 0.00026 31.8 2.4 37 216-252 120-157 (246)
324 3fyb_A Protein of unknown func 51.3 5.8 0.0002 27.7 1.3 12 226-237 41-52 (104)
325 1wg2_A Zinc finger (AN1-like) 51.2 6 0.00021 25.4 1.3 44 205-252 15-59 (64)
326 2o35_A Hypothetical protein DU 51.1 5.9 0.0002 27.7 1.3 13 226-238 42-54 (105)
327 2puy_A PHD finger protein 21A; 51.1 2.8 9.6E-05 26.4 -0.3 46 205-250 5-53 (60)
328 4abm_A Charged multivesicular 51.0 51 0.0018 21.9 10.9 30 120-149 44-73 (79)
329 2dlk_A Novel protein; ZF-C2H2 50.9 8.1 0.00028 24.6 2.1 14 238-251 66-79 (79)
330 2iyb_E Testin, TESS, TES; LIM 50.8 8.7 0.0003 24.1 2.1 37 207-252 4-44 (65)
331 1wfl_A Zinc finger protein 216 50.5 6.7 0.00023 25.9 1.5 42 205-250 25-67 (74)
332 2m0d_A Zinc finger and BTB dom 50.5 4.3 0.00015 20.0 0.5 13 240-252 3-15 (30)
333 2k5c_A Uncharacterized protein 50.4 3.9 0.00013 27.5 0.3 16 239-254 50-65 (95)
334 1ses_A Seryl-tRNA synthetase; 50.2 73 0.0025 28.2 8.8 30 52-81 29-58 (421)
335 2d8y_A Eplin protein; LIM doma 50.1 19 0.00063 24.2 3.9 32 206-237 43-75 (91)
336 2elt_A Zinc finger protein 406 50.1 4.5 0.00015 21.2 0.5 15 239-253 8-22 (36)
337 4fla_A Regulation of nuclear P 50.0 80 0.0027 23.8 12.9 18 96-113 82-99 (152)
338 2els_A Zinc finger protein 406 49.9 4.4 0.00015 21.4 0.5 14 239-252 8-21 (36)
339 1we9_A PHD finger family prote 49.8 3 0.0001 26.5 -0.3 47 204-250 5-59 (64)
340 1a7i_A QCRP2 (LIM1); LIM domai 49.8 6 0.0002 26.1 1.2 39 206-247 35-74 (81)
341 2elx_A Zinc finger protein 406 49.6 4.6 0.00016 21.0 0.5 15 239-253 6-20 (35)
342 1j2o_A FLIN2, fusion of rhombo 49.2 16 0.00055 25.8 3.6 34 206-239 31-67 (114)
343 1wfh_A Zinc finger (AN1-like) 49.2 9 0.00031 24.5 1.9 42 205-250 15-57 (64)
344 3qne_A Seryl-tRNA synthetase, 49.1 1.4E+02 0.0049 27.0 10.5 21 57-77 39-59 (485)
345 1x3h_A Leupaxin; paxillin fami 49.0 11 0.00039 24.5 2.6 37 207-252 17-53 (80)
346 1x3h_A Leupaxin; paxillin fami 48.9 18 0.00062 23.4 3.6 32 206-237 42-74 (80)
347 1l8d_A DNA double-strand break 48.9 65 0.0022 22.4 12.1 14 100-113 24-37 (112)
348 2elo_A Zinc finger protein 406 48.6 5.1 0.00017 21.2 0.6 15 239-253 8-22 (37)
349 1x63_A Skeletal muscle LIM-pro 48.3 13 0.00044 24.4 2.8 39 206-253 16-56 (82)
350 2kpi_A Uncharacterized protein 48.3 3.5 0.00012 25.7 -0.1 41 202-261 7-49 (56)
351 1x64_A Alpha-actinin-2 associa 48.3 12 0.0004 25.2 2.6 33 206-238 52-85 (89)
352 1wfp_A Zinc finger (AN1-like) 48.3 10 0.00034 25.1 2.1 43 205-251 25-68 (74)
353 2dlo_A Thyroid receptor-intera 48.2 18 0.00061 23.6 3.5 32 206-237 42-75 (81)
354 1wff_A Riken cDNA 2810002D23 p 48.0 7.7 0.00026 26.4 1.5 43 205-251 25-69 (85)
355 3a43_A HYPD, hydrogenase nicke 47.9 2 6.8E-05 32.2 -1.6 11 240-250 107-117 (139)
356 2ffw_A Midline-1; B-BOX, ring 47.5 14 0.00049 24.4 2.9 30 205-234 30-62 (78)
357 2elq_A Zinc finger protein 406 47.4 5.2 0.00018 21.1 0.5 14 239-252 8-21 (36)
358 4fla_A Regulation of nuclear P 47.4 88 0.003 23.5 13.5 79 27-107 43-121 (152)
359 1g47_A Pinch protein; LIM doma 47.2 11 0.00039 24.3 2.3 39 205-252 11-51 (77)
360 1x8y_A Lamin A/C; structural p 47.1 63 0.0021 21.7 10.4 46 37-82 35-80 (86)
361 1x62_A C-terminal LIM domain p 47.0 9 0.00031 25.1 1.8 38 205-251 15-52 (79)
362 1m1j_B Fibrinogen beta chain; 46.8 1.6E+02 0.0056 26.4 18.1 7 173-179 178-184 (464)
363 1x6h_A Transcriptional repress 46.6 8.9 0.0003 24.8 1.7 14 205-218 15-28 (86)
364 1jcd_A Major outer membrane li 46.6 47 0.0016 20.2 7.8 14 136-149 12-25 (52)
365 2akf_A Coronin-1A; coiled coil 46.5 32 0.0011 18.1 4.3 24 70-93 4-27 (32)
366 1ubd_C Protein (YY1 zinc finge 46.5 26 0.00089 24.3 4.4 50 205-254 34-108 (124)
367 2l4z_A DNA endonuclease RBBP8, 46.0 13 0.00043 27.0 2.6 24 206-229 62-89 (123)
368 1wep_A PHF8; structural genomi 46.0 17 0.00059 24.0 3.1 48 205-253 12-67 (79)
369 1d7m_A Cortexillin I; coiled-c 45.9 68 0.0023 21.8 13.7 10 144-153 48-57 (101)
370 2ytb_A Zinc finger protein 32; 45.7 9.1 0.00031 20.8 1.4 15 239-253 10-24 (42)
371 2dj7_A Actin-binding LIM prote 45.5 12 0.00041 24.7 2.2 12 205-216 15-26 (80)
372 2w83_C C-JUN-amino-terminal ki 45.5 63 0.0021 21.3 9.4 12 21-32 7-18 (77)
373 1srk_A Zinc finger protein ZFP 45.4 5.8 0.0002 20.6 0.5 15 239-253 6-20 (35)
374 2i50_A Ubiquitin carboxyl-term 45.3 5.3 0.00018 29.4 0.4 25 206-230 29-67 (126)
375 2elv_A Zinc finger protein 406 45.2 6.1 0.00021 20.8 0.6 15 239-253 8-22 (36)
376 2cuq_A Four and A half LIM dom 45.1 13 0.00045 24.2 2.4 37 206-251 16-52 (80)
377 3m91_A Proteasome-associated A 45.1 50 0.0017 20.0 6.8 10 164-173 38-47 (51)
378 2egq_A FHL1 protein; LIM domai 45.0 14 0.00049 23.8 2.6 39 206-253 16-59 (77)
379 2yte_A Zinc finger protein 473 44.8 9.8 0.00033 20.7 1.5 15 239-253 9-23 (42)
380 1a93_B MAX protein, coiled coi 44.8 39 0.0013 18.6 4.2 17 67-83 9-25 (34)
381 2ely_A Zinc finger protein 224 44.6 11 0.00039 21.1 1.8 16 239-254 11-26 (46)
382 3a7p_A Autophagy protein 16; c 44.6 98 0.0034 23.3 13.6 25 156-180 110-134 (152)
383 2enf_A Zinc finger protein 347 44.5 10 0.00035 21.2 1.6 15 239-253 11-25 (46)
384 2en7_A Zinc finger protein 268 44.3 10 0.00035 20.9 1.5 15 239-253 11-25 (44)
385 1fv5_A First zinc finger of U- 44.0 6.6 0.00023 21.8 0.6 15 239-253 7-21 (36)
386 2yti_A Zinc finger protein 347 44.0 11 0.00038 21.1 1.7 15 239-253 11-25 (46)
387 2i13_A AART; DNA binding, zinc 43.5 13 0.00043 28.4 2.4 13 240-252 161-173 (190)
388 2epr_A POZ-, at HOOK-, and zin 43.5 7.3 0.00025 22.3 0.8 37 205-248 12-48 (48)
389 2eq2_A Zinc finger protein 347 42.9 12 0.0004 20.9 1.7 15 239-253 11-25 (46)
390 1deb_A APC protein, adenomatou 42.8 54 0.0018 19.7 8.1 24 60-83 5-28 (54)
391 2eos_A B-cell lymphoma 6 prote 42.7 12 0.0004 20.5 1.6 15 239-253 10-24 (42)
392 3asl_A E3 ubiquitin-protein li 42.4 7.9 0.00027 25.2 0.9 42 207-248 20-68 (70)
393 2em6_A Zinc finger protein 224 42.1 12 0.00041 20.9 1.6 15 239-253 11-25 (46)
394 2yql_A PHD finger protein 21A; 42.0 2.8 9.7E-05 25.9 -1.3 43 205-247 9-54 (56)
395 2ep1_A Zinc finger protein 484 41.9 12 0.00042 20.8 1.7 15 239-253 11-25 (46)
396 2ri7_A Nucleosome-remodeling f 41.8 4.4 0.00015 31.3 -0.5 45 204-249 7-59 (174)
397 2eon_A ZFP-95, zinc finger pro 41.6 12 0.00041 21.0 1.6 15 239-253 11-25 (46)
398 1f2i_G Fusion of N-terminal 17 41.6 13 0.00044 23.2 1.9 16 238-253 47-62 (73)
399 2elm_A Zinc finger protein 406 41.4 4.9 0.00017 21.5 -0.2 14 239-252 8-21 (37)
400 2enh_A Zinc finger protein 28 41.2 12 0.00042 20.9 1.6 15 239-253 11-25 (46)
401 2eoh_A Zinc finger protein 28 41.2 13 0.00044 20.8 1.6 15 239-253 11-25 (46)
402 2eq1_A Zinc finger protein 347 41.2 13 0.00043 20.8 1.6 15 239-253 11-25 (46)
403 3vp9_A General transcriptional 41.0 85 0.0029 21.5 8.4 71 3-83 15-86 (92)
404 2e6s_A E3 ubiquitin-protein li 40.7 6.1 0.00021 26.3 0.1 42 207-248 28-76 (77)
405 2yth_A Zinc finger protein 224 40.6 12 0.00042 20.9 1.5 15 239-253 11-25 (46)
406 2eov_A Zinc finger protein 484 40.6 13 0.00044 20.7 1.6 15 239-253 11-25 (46)
407 1ci6_A Transcription factor AT 40.0 68 0.0023 20.1 6.7 10 101-110 45-54 (63)
408 1jcd_A Major outer membrane li 40.0 62 0.0021 19.7 7.8 24 126-149 9-32 (52)
409 2xv5_A Lamin-A/C; structural p 39.9 77 0.0026 20.7 7.6 45 37-81 12-56 (74)
410 2emg_A Zinc finger protein 484 39.9 13 0.00044 20.8 1.5 15 239-253 11-25 (46)
411 1q14_A HST2 protein; histone d 39.8 14 0.00046 32.3 2.2 37 216-252 143-183 (361)
412 3ask_A E3 ubiquitin-protein li 39.8 6 0.0002 32.2 -0.1 42 207-248 176-224 (226)
413 2eoq_A Zinc finger protein 224 39.7 14 0.00047 20.6 1.6 15 239-253 11-25 (46)
414 2en9_A Zinc finger protein 28 39.7 13 0.00045 20.7 1.5 15 239-253 11-25 (46)
415 1q1a_A HST2 protein; ternary c 39.6 16 0.00056 30.6 2.6 37 215-251 134-174 (289)
416 2l4z_A DNA endonuclease RBBP8, 39.4 14 0.00049 26.7 2.0 12 240-251 88-99 (123)
417 2ehe_A Four and A half LIM dom 39.4 20 0.00068 23.4 2.6 11 206-216 16-26 (82)
418 2eou_A Zinc finger protein 473 39.3 14 0.00048 20.4 1.6 15 239-253 11-25 (44)
419 2yu5_A Zinc finger protein 473 39.3 8.9 0.0003 21.2 0.7 15 239-253 11-25 (44)
420 2ej4_A Zinc finger protein ZIC 39.2 40 0.0014 22.0 4.3 13 241-253 63-75 (95)
421 2em0_A Zinc finger protein 224 38.9 15 0.00051 20.5 1.7 15 239-253 11-25 (46)
422 2eop_A Zinc finger protein 268 38.8 14 0.00046 20.6 1.5 15 239-253 11-25 (46)
423 1njq_A Superman protein; zinc- 38.8 7.9 0.00027 20.8 0.4 14 239-252 5-18 (39)
424 2csh_A Zinc finger protein 297 38.7 8.2 0.00028 26.5 0.6 14 240-253 65-78 (110)
425 1wem_A Death associated transc 38.7 7 0.00024 25.7 0.2 47 205-252 16-73 (76)
426 2dmi_A Teashirt homolog 3; zin 38.7 22 0.00074 24.4 2.9 13 240-252 80-92 (115)
427 2ytr_A Zinc finger protein 347 38.5 15 0.0005 20.5 1.6 15 239-253 11-25 (46)
428 2emk_A Zinc finger protein 28 38.5 14 0.00049 20.6 1.6 15 239-253 11-25 (46)
429 2emz_A ZFP-95, zinc finger pro 38.4 15 0.00051 20.5 1.6 15 239-253 11-25 (46)
430 1twf_L ABC10-alpha, DNA-direct 38.4 17 0.00056 23.7 1.9 12 239-250 44-55 (70)
431 4gut_A Lysine-specific histone 38.3 17 0.00059 35.0 2.9 33 206-238 14-56 (776)
432 2eom_A ZFP-95, zinc finger pro 38.2 15 0.00051 20.6 1.6 15 239-253 11-25 (46)
433 2ytn_A Zinc finger protein 347 38.1 14 0.00047 20.6 1.4 15 239-253 11-25 (46)
434 2yrm_A B-cell lymphoma 6 prote 38.1 15 0.00052 20.2 1.6 15 239-253 9-23 (43)
435 1x4s_A Protein FON, zinc finge 37.8 13 0.00045 23.4 1.3 32 203-234 9-44 (59)
436 2epc_A Zinc finger protein 32; 37.7 9.2 0.00032 20.8 0.6 15 239-253 10-24 (42)
437 1sp2_A SP1F2; zinc finger, tra 37.7 16 0.00055 18.1 1.6 14 240-253 2-17 (31)
438 3v43_A Histone acetyltransfera 37.6 25 0.00085 24.9 3.0 44 204-247 4-62 (112)
439 3d00_A Tungsten formylmethanof 37.6 9.9 0.00034 30.0 0.9 25 204-233 162-186 (191)
440 2epx_A Zinc finger protein 28 37.6 15 0.00051 20.5 1.5 15 239-253 11-25 (47)
441 2eoy_A Zinc finger protein 473 37.5 10 0.00034 21.3 0.7 15 239-253 11-25 (46)
442 2jvx_A NF-kappa-B essential mo 37.4 2.9 9.8E-05 22.2 -1.5 11 241-251 4-14 (28)
443 2lw1_A ABC transporter ATP-bin 37.3 92 0.0032 20.9 9.6 19 164-182 64-82 (89)
444 2elz_A Zinc finger protein 224 37.3 15 0.00052 20.5 1.5 15 239-253 11-25 (46)
445 2eq4_A Zinc finger protein 224 37.1 15 0.00052 20.4 1.5 15 239-253 11-25 (46)
446 2aus_D NOP10, ribosome biogene 37.0 12 0.00041 23.7 1.0 18 241-258 18-35 (60)
447 1ma3_A SIR2-AF2, transcription 36.9 14 0.00049 30.3 1.8 36 216-251 122-159 (253)
448 3a7p_A Autophagy protein 16; c 36.7 1.3E+02 0.0046 22.5 14.1 25 130-154 105-129 (152)
449 2el5_A Zinc finger protein 268 36.7 9.6 0.00033 20.8 0.5 15 239-253 9-23 (42)
450 2ytm_A Zinc finger protein 28 36.6 16 0.00055 20.4 1.6 15 239-253 11-25 (46)
451 3iv1_A Tumor susceptibility ge 36.5 92 0.0032 20.6 10.2 39 66-104 26-64 (78)
452 2ept_A Zinc finger protein 32; 36.5 9.9 0.00034 20.6 0.6 15 239-253 9-23 (41)
453 2ghf_A ZHX1, zinc fingers and 36.4 15 0.0005 25.6 1.6 42 205-253 18-63 (102)
454 2eoj_A Zinc finger protein 268 36.3 10 0.00034 21.0 0.6 15 239-253 11-25 (44)
455 3efg_A Protein SLYX homolog; x 36.3 92 0.0031 20.5 7.1 14 98-111 40-53 (78)
456 2kgg_A Histone demethylase jar 36.2 16 0.00055 22.0 1.5 42 206-247 3-52 (52)
457 2ytq_A Zinc finger protein 268 36.1 16 0.00056 20.3 1.6 15 239-253 11-25 (46)
458 3k29_A Putative uncharacterize 35.6 1.5E+02 0.005 22.7 16.5 23 69-91 20-42 (169)
459 1vq8_1 50S ribosomal protein L 35.5 3.2 0.00011 25.9 -1.7 25 224-248 16-40 (57)
460 3f6q_B LIM and senescent cell 35.4 23 0.00078 22.2 2.3 13 205-217 11-23 (72)
461 2epz_A Zinc finger protein 28 35.1 17 0.00057 20.2 1.5 15 239-253 11-25 (46)
462 1zfo_A LAsp-1; LIM domain, zin 35.0 17 0.00059 19.3 1.4 12 240-251 3-14 (31)
463 3ihp_A Ubiquitin carboxyl-term 34.9 12 0.00042 36.5 1.3 24 206-229 216-239 (854)
464 3vhs_A ATPase wrnip1; zinc fin 34.9 7.3 0.00025 20.0 -0.2 11 242-252 8-18 (29)
465 2eow_A Zinc finger protein 347 34.8 11 0.00036 21.1 0.5 15 239-253 11-25 (46)
466 1ovx_A ATP-dependent CLP prote 34.7 19 0.00066 23.2 1.8 32 205-236 18-51 (67)
467 2yts_A Zinc finger protein 484 34.7 11 0.00037 21.1 0.5 15 239-253 11-25 (46)
468 3glr_A NAD-dependent deacetyla 34.6 18 0.0006 30.5 2.1 38 214-251 136-174 (285)
469 2oxj_A Hybrid alpha/beta pepti 34.6 58 0.002 17.8 4.4 7 103-109 18-24 (34)
470 1x4w_A Hypothetical protein FL 34.5 11 0.00039 24.3 0.7 43 205-251 15-61 (67)
471 1gu4_A CAAT/enhancer binding p 34.4 1E+02 0.0034 20.4 6.6 20 93-112 50-69 (78)
472 3trt_A Vimentin; cytoskeleton, 34.4 94 0.0032 20.1 11.2 24 94-117 29-52 (77)
473 1j8f_A SIRT2, sirtuin 2, isofo 34.3 21 0.00073 30.5 2.6 40 211-250 153-195 (323)
474 2epv_A Zinc finger protein 268 34.3 11 0.00037 20.9 0.5 14 239-252 11-24 (44)
475 2eq3_A Zinc finger protein 347 34.3 11 0.00039 21.0 0.6 14 239-252 11-24 (46)
476 2d9k_A FLN29 gene product; zin 34.3 19 0.00067 23.1 1.9 43 214-257 14-60 (75)
477 2epw_A Zinc finger protein 268 34.2 12 0.0004 20.9 0.7 15 239-253 11-25 (46)
478 2ytt_A Zinc finger protein 473 34.1 20 0.00067 20.0 1.7 14 239-252 11-24 (46)
479 3mhs_A Ubiquitin carboxyl-term 34.0 17 0.00057 32.5 2.0 50 206-255 49-113 (476)
480 1lwu_C Fibrinogen gamma chain; 33.9 1.5E+02 0.0052 25.2 7.8 56 61-116 1-56 (323)
481 2yrj_A Zinc finger protein 473 33.9 11 0.00039 20.9 0.6 14 239-252 11-24 (46)
482 2ds5_A CLPX, ATP-dependent CLP 33.9 25 0.00085 21.4 2.1 31 203-233 9-41 (51)
483 2emi_A Zinc finger protein 484 33.7 12 0.0004 21.0 0.6 14 239-252 11-24 (46)
484 1zfd_A SWI5; DNA binding motif 33.7 21 0.00072 17.7 1.6 15 239-253 2-18 (32)
485 1wjp_A Zinc finger protein 295 33.7 8.9 0.0003 26.2 0.0 38 203-252 14-54 (107)
486 2dq0_A Seryl-tRNA synthetase; 33.7 2.6E+02 0.0088 24.9 10.0 69 86-154 31-102 (455)
487 2en2_A B-cell lymphoma 6 prote 33.6 11 0.00038 20.5 0.4 14 239-252 10-23 (42)
488 2y3a_B Phosphatidylinositol 3- 33.5 2.1E+02 0.0073 24.0 10.0 126 18-143 13-147 (302)
489 2en3_A ZFP-95, zinc finger pro 33.3 12 0.00043 20.8 0.7 15 239-253 11-25 (46)
490 2yto_A Zinc finger protein 484 33.3 12 0.00041 21.0 0.6 14 239-252 11-24 (46)
491 2emb_A Zinc finger protein 473 33.3 11 0.00037 20.9 0.4 14 239-252 11-24 (44)
492 2emj_A Zinc finger protein 28 33.3 12 0.0004 21.0 0.5 14 239-252 11-24 (46)
493 2l3k_A Rhombotin-2, linker, LI 33.1 24 0.00082 25.2 2.3 39 207-254 10-50 (123)
494 2ytf_A Zinc finger protein 268 32.9 12 0.00041 20.9 0.5 14 239-252 11-24 (46)
495 3c3f_A Alpha/beta peptide with 32.9 63 0.0021 17.6 4.4 31 86-116 1-31 (34)
496 1lwu_C Fibrinogen gamma chain; 32.9 1.7E+02 0.0057 24.9 7.9 55 68-122 1-55 (323)
497 3lss_A Seryl-tRNA synthetase; 32.8 2.8E+02 0.0095 25.0 10.4 71 49-119 35-137 (484)
498 2eof_A Zinc finger protein 268 32.8 11 0.00039 20.7 0.4 14 239-252 11-24 (44)
499 2csz_A Synaptotagmin-like prot 32.7 18 0.00063 23.9 1.5 28 204-231 24-56 (76)
500 2ysm_A Myeloid/lymphoid or mix 32.6 13 0.00045 26.2 0.8 45 203-247 5-55 (111)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.64 E-value=3.5e-16 Score=121.11 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=45.0
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+...+.|+||...|.+|+++||||+||..|+..|+. +...||.||.++...
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK 100 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC
Confidence 334588999999999999999999999999999987 567899999999654
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=115.22 Aligned_cols=61 Identities=25% Similarity=0.537 Sum_probs=51.9
Q ss_pred HHHHHhccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC-CCcc
Q psy16189 196 MEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA-NDYH 256 (262)
Q Consensus 196 ~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~d~~ 256 (262)
......+...+.|+||...|.+|++++|||+||..|+..|+..+...||.||.++.. .++.
T Consensus 43 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 104 (124)
T 3fl2_A 43 QLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ 104 (124)
T ss_dssp HHHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC
T ss_pred HHHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCC
Confidence 344455666799999999999999999999999999999998777799999999976 4443
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.58 E-value=1.3e-15 Score=106.19 Aligned_cols=58 Identities=17% Similarity=0.356 Sum_probs=51.5
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+...+.|+||...+.+|++++|||+||..|+..|+..+...||.||.++...++.+.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 4557899999999999999999999999999999987688999999999877766543
No 4
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.58 E-value=9.2e-16 Score=112.18 Aligned_cols=63 Identities=24% Similarity=0.616 Sum_probs=55.2
Q ss_pred HHHHhccccCccccccccccccee-ccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 197 EEIREYKETLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 197 ~e~~~~~~~~~C~iC~~~~~~~v~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
.....+...+.|+||...|.+|+. ++|||+||..||..|+......||.||.+|...++.+.+
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 445556777999999999999999 999999999999999997767899999999888877654
No 5
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=8e-16 Score=105.15 Aligned_cols=57 Identities=35% Similarity=0.847 Sum_probs=51.7
Q ss_pred cccCcccccccccccc-------eeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 203 KETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.....|+||.+.+.+| ++++|||+||..|+..|+.. ...||.||.++...+++++||
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeeccC
Confidence 3468899999999887 88999999999999999985 468999999999999999997
No 6
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=101.75 Aligned_cols=55 Identities=35% Similarity=0.864 Sum_probs=50.5
Q ss_pred cCcccccccccccc-------eeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 205 TLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
...|+||...+.++ +.++|||+||..|+..|+.. ...||.||.++...++.++||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 47899999999876 78999999999999999985 668999999999999999997
No 7
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=2.2e-15 Score=101.32 Aligned_cols=57 Identities=23% Similarity=0.686 Sum_probs=50.9
Q ss_pred cCccccccc-ccccc----eeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 205 TLTCPSCKV-KRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 205 ~~~C~iC~~-~~~~~----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
...|+||.. .+.+| ++++|||+||..|+..|+..+...||.||.++...++.+++|.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 478999999 88887 5789999999999999987677789999999999999998875
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-15 Score=100.71 Aligned_cols=54 Identities=20% Similarity=0.538 Sum_probs=48.5
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
+...+.|+||...+.+|+.++|||+||..|+..|+..+...||.||.++...++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 456789999999999999999999999999999997667789999999987654
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-15 Score=105.60 Aligned_cols=60 Identities=20% Similarity=0.540 Sum_probs=52.2
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccC------CCCccCCCcccCCCCcccccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR------QRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~------~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.+...+.|+||...|.+|++++|||+||..|+..|+... ...||.||.++...++.+.+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 356678999999999999999999999999999998853 678999999999888776653
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=101.62 Aligned_cols=55 Identities=31% Similarity=0.620 Sum_probs=48.7
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhcc--CCCCccCCCcccCCCCc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKCNAAFGANDY 255 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~d~ 255 (262)
.+...+.|+||...+.+|++++|||+||..|+..|+.. +...||.||.++...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45667899999999999999999999999999999973 56689999999988765
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.1e-14 Score=102.77 Aligned_cols=60 Identities=30% Similarity=0.685 Sum_probs=52.3
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccC-----CCCccCCCcccCCCCcccccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR-----QRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.+...+.|+||...+.+|++++|||+||..|+..|+... ...||.||.++...++.+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 355678999999999999999999999999999999862 678999999999888776653
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-15 Score=105.19 Aligned_cols=57 Identities=26% Similarity=0.571 Sum_probs=47.7
Q ss_pred hccccCcccccccccccceecc-ccccccHHHHHHHhcc-CCCCccCCCccc-CCCCccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYET-RQRKCPKCNAAF-GANDYHR 257 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~-CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~-~~~d~~~ 257 (262)
.+...+.|+||...|.+|++++ |||+||..|+..|+.. +...||.||.++ ...++.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEE
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCc
Confidence 3566799999999999999999 9999999999999964 347899999998 4444443
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.49 E-value=1.5e-14 Score=105.59 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=50.9
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+...+.||||...|.+||+++|||+||..||..||. +...||.||.++...++.+.+
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECH
Confidence 455799999999999999999999999999999998 568899999999988776653
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.49 E-value=1.8e-14 Score=107.22 Aligned_cols=63 Identities=27% Similarity=0.585 Sum_probs=52.7
Q ss_pred HHHHhccccCcccccccccccceeccccccccHHHHHHHhccC--CCCccCCCcccCCCCccccc
Q psy16189 197 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 197 ~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~d~~~iy 259 (262)
.....+...+.|+||...+.+|++++|||+||..|+..|+... ...||.||.++...++.+.+
T Consensus 13 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 13 NVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred HHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 3344555668999999999999999999999999999999853 35799999999988776654
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=102.84 Aligned_cols=59 Identities=25% Similarity=0.585 Sum_probs=50.9
Q ss_pred hccccCccccccccccc----ceeccccccccHHHHHHHhccC--CCCccCCCcccCCCCccccc
Q psy16189 201 EYKETLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~d~~~iy 259 (262)
.+...+.|+||...|.+ |++++|||+||..|+..|+... ...||.||.++...++..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSE
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHH
Confidence 35667899999999998 9999999999999999999865 47899999999887776553
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=102.26 Aligned_cols=60 Identities=25% Similarity=0.576 Sum_probs=52.4
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhcc-----CCCCccCCCcccCCCCcccccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET-----RQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
.+...+.|+||...+.+|++++|||+||..|+..|+.. +...||.||.++...++.+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 45667899999999999999999999999999999875 3678999999999888876653
No 17
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=113.90 Aligned_cols=53 Identities=30% Similarity=0.791 Sum_probs=47.8
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+...+.|+||...|.+|++++|||+||..|+..|+..+...||.||.++...
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34456899999999999999999999999999999997777899999999876
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=99.93 Aligned_cols=55 Identities=29% Similarity=0.590 Sum_probs=47.1
Q ss_pred hccccCcccccccccccceecc-ccccccHHHHHHHhccC-CCCccCCCcccCCCCc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETR-QRKCPKCNAAFGANDY 255 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~-CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~d~ 255 (262)
.+...+.|+||...|.+|++++ |||+||..|+..|+... ...||.||.++...|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 4566789999999999999999 99999999999999853 3689999998765443
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=98.58 Aligned_cols=57 Identities=28% Similarity=0.627 Sum_probs=49.5
Q ss_pred HhccccCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 200 REYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 200 ~~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
+.+...+.|+||...+.+|+.+ +|||+||..|+..|+.. ...||.||.++...++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccc
Confidence 3456678999999999999887 99999999999999974 578999999998876654
No 20
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.48 E-value=2e-13 Score=109.27 Aligned_cols=58 Identities=5% Similarity=-0.046 Sum_probs=51.2
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+...+.||||+..|.+||+++|||+||..||..|+..+...||.||.++...++.+.+
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 4556999999999999999999999999999999987555799999999888777654
No 21
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.47 E-value=1.6e-14 Score=102.34 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=50.0
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
+...+.||||...|.+||+++|||+||..||..|+.. ...||.||.++...++.+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEEC
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchH
Confidence 4557999999999999999999999999999999984 6789999999988777654
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=105.57 Aligned_cols=58 Identities=22% Similarity=0.496 Sum_probs=49.4
Q ss_pred hccccCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
.+...+.|+||...+.+|+.+ +|||+||..|+..|+. +...||.||.++...++.+.+
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhCCcCH
Confidence 344568999999999999888 9999999999999998 457899999999877766543
No 23
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=3.2e-14 Score=106.88 Aligned_cols=61 Identities=21% Similarity=0.495 Sum_probs=52.7
Q ss_pred HHHHHhccccCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 196 MEEIREYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 196 ~~e~~~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
...+..+...+.|+||...|.+|+++ +|||+||..|+..|+. ..||.||.++...++.+.+
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~ 74 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINR 74 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCH
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccH
Confidence 34556677789999999999999999 9999999999999987 6799999999877776543
No 24
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.44 E-value=3.1e-14 Score=98.15 Aligned_cols=60 Identities=23% Similarity=0.555 Sum_probs=50.5
Q ss_pred HHHHHHhccccCcccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 195 MMEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 195 l~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
+.++++.+.....|+||...+.+++++||||. ||..|+..| ..||.||.+|.. ..++|++
T Consensus 14 ~~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~S 74 (74)
T 4ic3_A 14 TEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF--KQKILMS 74 (74)
T ss_dssp HHHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE--EEECBC-
T ss_pred HHHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC--cEEEeeC
Confidence 34555666777999999999999999999999 999999886 679999999864 5788874
No 25
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.43 E-value=7.4e-14 Score=101.47 Aligned_cols=57 Identities=7% Similarity=-0.029 Sum_probs=50.6
Q ss_pred ccccCcccccccccccceecccc-ccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCF-HVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
+...+.||||...|++||+++|| |+||..||..||.. ...||.||.++...++.+.+
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcH
Confidence 45579999999999999999999 99999999999985 67899999999988776653
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.1e-14 Score=98.35 Aligned_cols=49 Identities=27% Similarity=0.657 Sum_probs=44.4
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
....+.|+||...+.+|++++|||+||..|+..|+.. ...||.||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 4556899999999999999999999999999999974 668999999986
No 27
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.43 E-value=5e-14 Score=105.66 Aligned_cols=55 Identities=25% Similarity=0.563 Sum_probs=49.1
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
...+.|+||...+.+|+.++|||+||..|+..|+..+...||.||.++...++.+
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 3458999999999999999999999999999999876788999999998777654
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.43 E-value=8e-14 Score=103.21 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=46.5
Q ss_pred hccccCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 201 EYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+...+.|+||...+.+|+++ +|||+||..|+..|+.. ...||.||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 456679999999999999997 99999999999999985 47899999999765
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.6e-14 Score=96.47 Aligned_cols=53 Identities=21% Similarity=0.478 Sum_probs=46.1
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~ 256 (262)
.....|+||...+.+|+.++|||+||..|+..|+.. ...||.||.+|...++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhcc
Confidence 345789999999999999999999999999999874 47899999999865544
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.41 E-value=1.8e-13 Score=95.11 Aligned_cols=56 Identities=18% Similarity=0.426 Sum_probs=46.6
Q ss_pred ccccCcccccccccc--cceecc--ccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 202 YKETLTCPSCKVKRK--DAVLTK--CFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~--~~v~l~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
++..+.||||.+.+. +++++| |||.||..|+..+|..+...||.||.++...++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 456789999999884 456665 99999999999998767788999999998776543
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.8e-14 Score=92.48 Aligned_cols=46 Identities=35% Similarity=0.712 Sum_probs=41.3
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhcc--CCCCccCC
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKC 246 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~--~~~~CP~C 246 (262)
.+...+.|+||...+.+|++++|||+||..|+..|+.. +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45667899999999999999999999999999999974 56689998
No 32
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.41 E-value=5.6e-14 Score=98.06 Aligned_cols=62 Identities=26% Similarity=0.635 Sum_probs=52.2
Q ss_pred HHHHHHHhccccCcccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccCC
Q psy16189 194 VMMEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLES 262 (262)
Q Consensus 194 ~l~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~~ 262 (262)
.+.++++.+.....|+||+..+.+++++||||. ||..|+..+ ..||.||.++.. +.++|+++
T Consensus 7 ~l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~p~ 69 (79)
T 2yho_A 7 VLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH--VQHVYLPT 69 (79)
T ss_dssp THHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE--EEECBCTT
T ss_pred HHHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC--eEEEEeCc
Confidence 355666677777899999999999999999999 999999875 379999999875 57888763
No 33
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.40 E-value=6.4e-14 Score=105.43 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=50.3
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
.+...+.|+||...+.+|+.++|||+||..|+..|+......||.||.++...++.+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 456678999999999999999999999999999999876668999999998766544
No 34
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=9.3e-14 Score=119.35 Aligned_cols=56 Identities=5% Similarity=-0.043 Sum_probs=49.7
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
-..+.||||...|.+||+++|||+||..||..|+..+...||.||.++...++.+.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 34689999999999999999999999999999998766669999999987776654
No 35
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=94.70 Aligned_cols=59 Identities=24% Similarity=0.599 Sum_probs=49.1
Q ss_pred HHHHHhccccCcccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 196 MEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 196 ~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
.+..+.+.....|+||+..+.+|+++||||. ||..|+.. ...||.||.++.. ..+||++
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~--~~~i~~S 75 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF--KQKIFMS 75 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC--CCBCCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC--cEEEecC
Confidence 3455556667899999999999999999999 99999964 3679999999865 5788874
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.38 E-value=6.2e-14 Score=104.95 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=44.4
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.+.|+||...+.+|++++|||+||..|+..|+..+...||.||.++..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 488999999999999999999999999999998777899999999863
No 37
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=94.21 Aligned_cols=57 Identities=25% Similarity=0.590 Sum_probs=48.8
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy 259 (262)
.+.....|+||...+.+ ++++|||+||..|+..|+. +...||.||.++...+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccccC
Confidence 35567899999999998 8999999999999999887 677899999999876655544
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.37 E-value=1.4e-13 Score=109.59 Aligned_cols=52 Identities=31% Similarity=0.775 Sum_probs=46.3
Q ss_pred hccccCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 201 EYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.+...+.|+||...|.+|+.+ +|||+||..|+..|+..+...||.||.++..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345567899999999999887 9999999999999999778889999999954
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-13 Score=88.55 Aligned_cols=46 Identities=30% Similarity=0.749 Sum_probs=40.9
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhcc--CCCCccCC
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKC 246 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~--~~~~CP~C 246 (262)
.+...+.|+||...+.+|++++|||+||..|+..|+.. +...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35667899999999999999999999999999999764 56789998
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.2e-13 Score=91.40 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=43.7
Q ss_pred ccccCcccccccccccc-------eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 202 YKETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
......|+||...+.++ ++++|||+||..|+..|+.. ...||.||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568899999999887 88999999999999999985 6689999998864
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.9e-13 Score=102.68 Aligned_cols=57 Identities=35% Similarity=0.842 Sum_probs=51.6
Q ss_pred ccCcccccccccccc-------eeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 204 ETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
..+.|+||.+.|.+| +.++|||+||..|+..|+.. ...||.||.++...++.++|++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccccccC
Confidence 458999999999888 99999999999999999984 5689999999999999998875
No 42
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5.1e-13 Score=96.37 Aligned_cols=56 Identities=29% Similarity=0.511 Sum_probs=47.0
Q ss_pred cccCcccccccccccceecc-ccccccHHHHHHHhccC-----CCCccC--CCcc-cCCCCcccc
Q psy16189 203 KETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETR-----QRKCPK--CNAA-FGANDYHRL 258 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~-CgH~fC~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~d~~~i 258 (262)
...+.||||...|.+||+++ |||+||..||..||... ...||. |+.. +...++.+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 44689999999999999996 99999999999999753 468999 8877 766666554
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=7.4e-13 Score=92.00 Aligned_cols=55 Identities=24% Similarity=0.515 Sum_probs=45.8
Q ss_pred ccccCcccccccccccc---eeccccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 202 YKETLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
......|+||+..|..+ +.++|||.||..|+..|+.. ...||.||.++...++.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCC
Confidence 44568999999998765 56799999999999999974 578999999998776654
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=3.2e-13 Score=87.88 Aligned_cols=47 Identities=30% Similarity=0.737 Sum_probs=41.1
Q ss_pred cccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
...+.|+||...|.+|++++|||+||..|+.. ....||.||.++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 34688999999999999999999999999877 356799999998654
No 45
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.31 E-value=4.9e-13 Score=103.64 Aligned_cols=52 Identities=17% Similarity=0.459 Sum_probs=46.8
Q ss_pred HhccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 200 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 200 ~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
+.+...+.|+||...+.+|+.++|||+||..||..|+..+...||.||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3567789999999999999999999999999999999877778999999764
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.30 E-value=1.1e-12 Score=87.65 Aligned_cols=54 Identities=22% Similarity=0.555 Sum_probs=47.2
Q ss_pred cCcccccccccccceec--ccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 205 TLTCPSCKVKRKDAVLT--KCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
...|+||++.+++++++ ||||. ||..|+..|+. +...||.||.++. ++.++|++
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~--~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ--MIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC--EEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh--ceEeeecC
Confidence 47899999999999987 99999 79999999886 4567999999985 57888874
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.30 E-value=1.2e-12 Score=84.55 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=41.6
Q ss_pred ccccCccccccccccc---ceecc-ccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 202 YKETLTCPSCKVKRKD---AVLTK-CFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~---~v~l~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
+.....|+||.+.+.+ ++.++ |||.||..|+..|+.. ...||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3456889999999977 67776 9999999999999874 678999999874
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=9.9e-13 Score=88.86 Aligned_cols=48 Identities=23% Similarity=0.695 Sum_probs=42.0
Q ss_pred ccCcccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
....|+||...+.+| +.++|||+||..|+..|+.. ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 357899999999986 78899999999999999974 4689999999863
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.2e-12 Score=84.51 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=40.8
Q ss_pred cCccccccccccc----ceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|+||.+.+.+ +++++|||.||..|+..|+... ..||.||.+|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 4789999999865 6888999999999999999865 78999999875
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=7.1e-13 Score=101.23 Aligned_cols=56 Identities=36% Similarity=0.862 Sum_probs=50.4
Q ss_pred ccCcccccccccccc-------eeccccccccHHHHHHHhccCCCCccCCCcccCCCCcccccc
Q psy16189 204 ETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~ 260 (262)
....|+||...+..+ +.++|||+||..|+..|+.. ...||.||.++..+++.++|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence 457899999988776 88899999999999999985 568999999999999999996
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.28 E-value=1.6e-12 Score=86.66 Aligned_cols=54 Identities=19% Similarity=0.557 Sum_probs=46.5
Q ss_pred cCcccccccccccceec--ccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 205 TLTCPSCKVKRKDAVLT--KCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
...|+||++.+++++++ ||||. ||..|+..++.. ...||.||.++. ++.++|+.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~--~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ--LVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC--EEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh--ceEEEecC
Confidence 47899999999999887 99999 999999998864 478999999985 57888863
No 52
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=92.41 Aligned_cols=48 Identities=25% Similarity=0.639 Sum_probs=41.8
Q ss_pred ccCccccccccccc---ceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~~---~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
....|+||+..|.. ++.++|||.||..|+..|+. ....||.||.+|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 45789999999877 67889999999999999997 45689999998864
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=104.78 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=50.5
Q ss_pred hccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
.+...+.|+||...+.+|+.++|||+||..|+..|+..+...||.||.++...++.+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 456678999999999999999999999999999999876679999999998776544
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.26 E-value=3.3e-12 Score=113.53 Aligned_cols=58 Identities=22% Similarity=0.481 Sum_probs=49.4
Q ss_pred HhccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccc
Q psy16189 200 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 200 ~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~ 257 (262)
+.......|+||...+.+|+++||||.||..|+..|+..+...||.||.++....+..
T Consensus 327 e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred hhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 3444558999999999999999999999999999998867789999999998754433
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=86.36 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=41.3
Q ss_pred cccCcccccccccc---cceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 203 KETLTCPSCKVKRK---DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 203 ~~~~~C~iC~~~~~---~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.....|+||...+. .++.++|||.||..|+..|+.. ...||.||.++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 44578999999884 4578899999999999999985 4579999999865
No 56
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3e-12 Score=88.28 Aligned_cols=48 Identities=27% Similarity=0.591 Sum_probs=41.9
Q ss_pred ccCcccccccccccc---eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
....|+||+..|..+ +.++|||.||..|+..|+.. ...||.||.++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 457899999998776 77899999999999999985 4689999999865
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.21 E-value=7.2e-12 Score=93.40 Aligned_cols=48 Identities=35% Similarity=0.663 Sum_probs=40.3
Q ss_pred cCcccccccccccce------------------eccccccccHHHHHHHhc----cCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAV------------------LTKCFHVFCWDCLRTRYE----TRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v------------------~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 252 (262)
...|+||+..|..+. +++|||.||..||..|+. .+...||.||..|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 368999999986653 789999999999999995 245689999999964
No 58
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.7e-12 Score=85.62 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=42.0
Q ss_pred ccccCcccccccccccce---eccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 202 YKETLTCPSCKVKRKDAV---LTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v---~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
+.....|+||...+..+. +++|||.||..|+..|+..+ ..||.||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 455688999999987653 44999999999999999854 589999999864
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.5e-12 Score=84.10 Aligned_cols=52 Identities=25% Similarity=0.520 Sum_probs=44.7
Q ss_pred ccCcccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLES 262 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~~ 262 (262)
....|+||++.+.+++++||||. ||..|+.. ...||.||.++.. +.+||.++
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~--~~~i~~~~ 66 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE--SFALSGPS 66 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC--EECCCSSC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc--eEEeecCC
Confidence 35789999999999999999999 99999984 3679999998864 68888653
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.18 E-value=6.8e-12 Score=105.25 Aligned_cols=58 Identities=29% Similarity=0.539 Sum_probs=49.8
Q ss_pred hccccCcccccccccccceec-cccccccHHHHHHHhccC-CCCccC--CCcccCCCCcccc
Q psy16189 201 EYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETR-QRKCPK--CNAAFGANDYHRL 258 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~-~~~CP~--Cr~~~~~~d~~~i 258 (262)
.....+.||||+..|.+||+. .|||+||..||..||..+ ...||. |+.++...++.+-
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 356678999999999999985 999999999999999753 467999 9999988777653
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.14 E-value=1.1e-11 Score=109.48 Aligned_cols=61 Identities=31% Similarity=0.667 Sum_probs=52.3
Q ss_pred HHHHHHHhccccCcccccccccccceecccccc-ccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 194 VMMEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 194 ~l~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
.+.+++..+.....|+||...+.+|+++||||. ||..|+..+ +.||.||.++.. ..++|++
T Consensus 284 ~~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~--~~~i~~s 345 (345)
T 3t6p_A 284 SLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG--TVRTFLS 345 (345)
T ss_dssp CHHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE--EEECC--
T ss_pred cHHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC--eEEeecC
Confidence 456778888889999999999999999999999 999999975 579999999864 5788863
No 62
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.8e-11 Score=83.99 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=39.6
Q ss_pred cCccccccccccc--------------ceec-cccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 205 TLTCPSCKVKRKD--------------AVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 205 ~~~C~iC~~~~~~--------------~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
...|+||...+.+ ++.+ +|||.|+..||..|+.. ...||.||.+|...+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchhh
Confidence 3669999998865 4444 59999999999999985 468999999987544
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.10 E-value=3.9e-11 Score=79.17 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=50.4
Q ss_pred cCcccccccccccceec-cccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 205 TLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
.+.||||.+.+.+||++ +|||+||..||..|+... .+||.+|.++...|+.++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECccC
Confidence 37899999999999999 999999999999999853 569999999999999998764
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.97 E-value=3.3e-10 Score=83.16 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=39.6
Q ss_pred cCcccccccccccc------------------eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDA------------------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~------------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...|+||...|..+ +.++|||.|+..||..|+.. ...||.||++|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 35799999988754 44799999999999999984 6789999999754
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=1.5e-10 Score=83.20 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=42.0
Q ss_pred ccCcccccccccccceec---cccccccHHHHHHHhcc----C---CCCccC--CCcc--cCCCCcc
Q psy16189 204 ETLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYET----R---QRKCPK--CNAA--FGANDYH 256 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~--~~~~d~~ 256 (262)
..+.|+||.+.+..+.++ +|||.||..|+..+|.. + ...||. |+.. +...++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 357899999999887554 79999999999998864 2 357999 9998 6654444
No 66
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.89 E-value=2.1e-06 Score=72.71 Aligned_cols=138 Identities=8% Similarity=0.084 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 17 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKER 96 (262)
Q Consensus 17 Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~ 96 (262)
++..+-.....+...-..++..+.++++.+..+......++.....+..+...++.++..++..+.+....+....
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---- 87 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---- 87 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----
Confidence 3444444455555555556677777777777776666666666666666666666666555555555444332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le 159 (262)
....+..|.+++...+..+......+.++...+..+...+..+...+..++..+......+.
T Consensus 88 -~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 88 -SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233445555555554444445555555555555555555555555555555544444443
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.76 E-value=8.1e-10 Score=82.30 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=0.0
Q ss_pred Ccccccccccccc------------------eeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDA------------------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~------------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|+||...|..+ +.++|||.|+..||..|+.. ...||.||.+|..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 5799999998653 22599999999999999985 5789999999754
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.67 E-value=1.3e-08 Score=72.24 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=40.7
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
-.|+.|.-++... .++||+|.||.+|+..|...+...||.|+.++.
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3699999998765 678999999999999998888889999999885
No 69
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.3e-08 Score=68.61 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=41.1
Q ss_pred cCccccccccc--ccceecccc-----ccccHHHHHHHhccCC-CCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKR--KDAVLTKCF-----HVFCWDCLRTRYETRQ-RKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~--~~~v~l~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~ 253 (262)
...|.||...+ .+++++||+ |.|...||..|+.... ..||.||.+|...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 46799999877 456788996 9999999999998653 6899999999654
No 70
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.45 E-value=0.00043 Score=57.59 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy16189 13 ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN 46 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~ 46 (262)
++-.+++.+...|+++......+-..+.+.+..+
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 43 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAEDRSKQLEDEL 43 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333333333333
No 71
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.31 E-value=0.00099 Score=55.36 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhH
Q psy16189 15 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS 56 (262)
Q Consensus 15 ~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka 56 (262)
...|..+..-|+.+......+-..+......+..+..+...+
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344333333333333333333333333333333
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=2.5e-06 Score=57.96 Aligned_cols=48 Identities=17% Similarity=0.457 Sum_probs=39.7
Q ss_pred cCcccccccccccc-eeccccccccHHHHHHHhccCC-CCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 252 (262)
...|.||...+... ....|+|.|-..|+..|+.++. ..||.|+.++..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 46799999988644 3349999999999999998653 679999999864
No 73
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.11 E-value=0.0019 Score=54.39 Aligned_cols=214 Identities=11% Similarity=0.121 Sum_probs=108.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy16189 34 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELH--- 110 (262)
Q Consensus 34 ~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~--- 110 (262)
+.|-+|.+.|..+.++...+.........+..+...+...+..++..++.....+.+++........++...+.++.
T Consensus 8 ~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~ 87 (256)
T 3na7_A 8 KQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK 87 (256)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34556666676776666666666666666666666666666666666665555555555555555555555554443
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 111 ------LRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184 (262)
Q Consensus 111 ------~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~ 184 (262)
.+...++..+++...+...+.++...++.++..+..+...+......+...... +...+..+...+..+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIFK 164 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344455555555555665666666666666666666666666665555543332 22233333333333322
Q ss_pred H--HhhCCchHHHHHHHHhccccCcccccccccccceeccccccccHHHHHHHhc-cCCCCccCCCcccC
Q psy16189 185 I--EQAGTLDEVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE-TRQRKCPKCNAAFG 251 (262)
Q Consensus 185 ~--~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 251 (262)
. .-....+..+-..++.++.+.. .+--.++...++..|+-..-..=+..... .....||.||.-+-
T Consensus 165 ~r~~l~~~i~~~lL~~Yerir~~~~-g~avv~v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 165 KKEDLVEKTEPKIYSFYERIRRWAK-NTSIVTIKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHG-GGSEEECBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CceEEEeeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 2 1122334445555555543211 11111222222333333332222222222 23456999998663
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.90 E-value=9.5e-06 Score=52.85 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=39.8
Q ss_pred ccCcccccccccccceecccc--c---cccHHHHHHHhcc-CCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCF--H---VFCWDCLRTRYET-RQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~Cg--H---~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 252 (262)
....|.||.....++.++||. | .|-..|+..|+.. +...||.|+.+|..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 346799999887777778865 3 7899999999974 56789999998864
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.77 E-value=0.0091 Score=47.48 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 7 SGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHT 86 (262)
Q Consensus 7 ~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~ 86 (262)
...+...+........+.|++++....-+...-.+++.. |-.+...+......+......+..++..++.....+
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~-- 82 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ-- 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344444554545555555555554444433333333322 222333333333333333344444444333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 87 AIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQV 150 (262)
Q Consensus 87 ~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~ 150 (262)
.......++.|++++..+......++.++.++.+...++.+........+..+...
T Consensus 83 --------~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 83 --------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 12223346666777666666666666666666666666665555555555444443
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.74 E-value=4.7e-06 Score=72.35 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=38.3
Q ss_pred ccCccccccccccc----c--e--eccccccccHHHHHHHhccCC----------CCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKD----A--V--LTKCFHVFCWDCLRTRYETRQ----------RKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~----~--v--~l~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~ 253 (262)
....|+||...+.+ | + ..+|||.|...|+..|+.+-+ ..||.|+.+++.+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34579999998765 2 1 248999999999999997421 3599999998753
No 77
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.72 E-value=0.00018 Score=73.12 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQN 32 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~ 32 (262)
+...+..+++.+......++...
T Consensus 858 El~~L~~eL~el~~~L~~le~~l 880 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAEL 880 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444444333
No 78
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.62 E-value=0.00026 Score=72.03 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 43 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e 43 (262)
.+...+...++.+.....+++.+...+-.++.+..
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333
No 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=97.18 E-value=0.0051 Score=45.93 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=23.8
Q ss_pred Ccccccccccccc----eeccccccccHHHHHHH
Q psy16189 206 LTCPSCKVKRKDA----VLTKCFHVFCWDCLRTR 235 (262)
Q Consensus 206 ~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~ 235 (262)
..|.+|...|.-. ..-.||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 6799999988532 44599999999997654
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.01 E-value=0.038 Score=38.84 Aligned_cols=90 Identities=21% Similarity=0.385 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI-DAMHTAIRKLEEKERYLQ 99 (262)
Q Consensus 21 ~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~-~~~~~~i~~l~e~e~~l~ 99 (262)
+++.|+.++.+...+-.++.+.+....+|..+..........+...+..+..|+..|...+ +..+..+..-.-.-..+.
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e 82 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIE 82 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888889999999999999998888888888999999988888776 444555544433333344
Q ss_pred HHHHHHHHHHH
Q psy16189 100 TVLTNVEKELH 110 (262)
Q Consensus 100 ~~i~~lekel~ 110 (262)
.++..|..+|.
T Consensus 83 ~kn~~L~~qL~ 93 (97)
T 2eqb_B 83 ILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 81
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.95 E-value=0.00076 Score=56.18 Aligned_cols=49 Identities=16% Similarity=0.466 Sum_probs=39.7
Q ss_pred cCcccccccccccc-eeccccccccHHHHHHHhccC-CCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETR-QRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 253 (262)
...|.+|....... ....|+|.|-..|+..|+.++ .+.||.|+.+++..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 57799999976544 344599999999999999865 46899999998754
No 82
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.95 E-value=0.089 Score=52.90 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHH
Q psy16189 38 QLREKDDANFKLMT 51 (262)
Q Consensus 38 ~l~e~e~~~~kl~~ 51 (262)
++.+.++.+..|..
T Consensus 936 rL~~~e~~n~~L~~ 949 (1080)
T 2dfs_A 936 KIDEQNKEYKSLLE 949 (1080)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 83
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.94 E-value=0.00055 Score=49.04 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=26.7
Q ss_pred cCcccccccc-ccccee--ccccccccHHHHHHHh
Q psy16189 205 TLTCPSCKVK-RKDAVL--TKCFHVFCWDCLRTRY 236 (262)
Q Consensus 205 ~~~C~iC~~~-~~~~v~--l~CgH~fC~~Ci~~~~ 236 (262)
.+.|++|... +..++. +.|||.||..|+..++
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4789999975 567776 8999999999999833
No 84
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.69 E-value=0.2 Score=50.36 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHH
Q psy16189 30 EQNSRLLQQLREKDDAN 46 (262)
Q Consensus 30 ~q~~~~~~~l~e~e~~~ 46 (262)
..+..|...|.+++..+
T Consensus 921 ~~~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKI 937 (1080)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555554444
No 85
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.61 E-value=0.17 Score=39.25 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 16 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKE 95 (262)
Q Consensus 16 ~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e 95 (262)
..++.+...+..-.+...++-++.+|+.-.+..+..-.....-++..+...++.|+.++..|+.+++.-...-.+..+..
T Consensus 13 kQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~ 92 (168)
T 3o0z_A 13 KQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI 92 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454445555555555555555544444444444455566677788888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 96 RYLQTVLTNVEKELHLRNQA 115 (262)
Q Consensus 96 ~~l~~~i~~lekel~~~~~~ 115 (262)
..+..++..|..++...+..
T Consensus 93 ~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887766543
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.55 E-value=0.003 Score=61.91 Aligned_cols=59 Identities=10% Similarity=0.038 Sum_probs=51.2
Q ss_pred HHhccccCcccccccccccceecccc-ccccHHHHHHHhccCCCCccCCCcccCCCCcccc
Q psy16189 199 IREYKETLTCPSCKVKRKDAVLTKCF-HVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 199 ~~~~~~~~~C~iC~~~~~~~v~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~i 258 (262)
....-..+.|||-.+.+.+||++|.| ++|-..+|..|+.. +.+||.-|.++...++.|.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc
Confidence 34455679999999999999999998 69999999999985 6689999999998877765
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.51 E-value=0.16 Score=37.85 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 100 TVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKT 179 (262)
Q Consensus 100 ~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~ 179 (262)
.....+..+...+...+......+.+.......+...-..+...+..+...+.+............+.++.++..++..+
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443334444444455555555556666666666666666666666667777888888877777
Q ss_pred HHHH
Q psy16189 180 ERMK 183 (262)
Q Consensus 180 ~~~~ 183 (262)
+.+.
T Consensus 121 ed~e 124 (129)
T 2fxo_A 121 DDLE 124 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 88
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.50 E-value=0.19 Score=38.62 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 49 LMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQ 128 (262)
Q Consensus 49 l~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~ 128 (262)
+..+..+|......+......|+.+++.+-..+.. |+-.+.....+-..++.+|..+...+.....+.....+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER 98 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444444444444332222 33333344444455555555555555444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16189 129 SAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159 (262)
Q Consensus 129 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le 159 (262)
.+..|...++.+...+...+.........+.
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555544444444444
No 89
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.36 E-value=0.0012 Score=44.49 Aligned_cols=36 Identities=28% Similarity=0.747 Sum_probs=30.9
Q ss_pred cccCcccccccccccceeccc----cccccHHHHHHHhcc
Q psy16189 203 KETLTCPSCKVKRKDAVLTKC----FHVFCWDCLRTRYET 238 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~C----gH~fC~~Ci~~~~~~ 238 (262)
...+.|.+|.++..+..+..| +|-||+.|....++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 346889999999999988888 699999999887764
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.02 E-value=2.6 Score=46.96 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 121 RKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 121 ~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
.++.++..........+...++.+.++...+..+..+++....+...++.+++....++.+..+-
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666666666666666666666666677776666666665443
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.90 E-value=0.14 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 91 LEEKERYLQTVLTNVEKELHLRNQA 115 (262)
Q Consensus 91 l~e~e~~l~~~i~~lekel~~~~~~ 115 (262)
+++..+.+......++.++...++.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 3333334444444444444444433
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.83 E-value=3.1 Score=46.37 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16189 126 SAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQL 175 (262)
Q Consensus 126 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l 175 (262)
....+.++...+..++.+.+....+...+..+++....++.+++.-+..|
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444443334444444444444444444444333
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.62 E-value=0.32 Score=45.28 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 139 KYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMK 183 (262)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~ 183 (262)
........++.++.+....++..+.....+..+...++.++..+.
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445555555555555555555555555443
No 94
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.56 E-value=0.49 Score=35.27 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 132 DLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRR 177 (262)
Q Consensus 132 ~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~ 177 (262)
+++..+..++..+..++..+.....+......-.-.++.+|..+++
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444455555555443
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.55 E-value=0.49 Score=35.13 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16189 132 DLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLR 176 (262)
Q Consensus 132 ~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~ 176 (262)
++...+..++..+..++..+.....+......-.-.++.+|..++
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443444433334444444444443
No 96
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.53 E-value=0.51 Score=35.09 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=41.0
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 38 QLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD 117 (262)
Q Consensus 38 ~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~ 117 (262)
.+..+++.+.+|.....+.......+......+..+...|..++..-...+....+.-..+...-..|+..+..+...++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444555555555555555555555555555555555444444444444444455555555544443
No 97
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.39 E-value=0.77 Score=36.37 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 8 GNEEEALLNEMEVTGQAFEDMQEQNSRLLQ 37 (262)
Q Consensus 8 ~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~ 37 (262)
|....-+...++.+...|++.+..+.-|-.
T Consensus 16 k~~~~~~~q~~~~le~El~EFqesSrELE~ 45 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVEFQEGSRELEA 45 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777776666554
No 98
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.06 E-value=0.89 Score=35.20 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLRNQAMDLNK 120 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k 120 (262)
..|.+.-..+...-..|++++..+...++..+
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555554444333
No 99
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.73 E-value=0.74 Score=34.65 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 105 VEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQ 149 (262)
Q Consensus 105 lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~ 149 (262)
+++++..++..+....-+..++.+++.+++.++..++.++..+..
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444444444433
No 100
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.68 E-value=0.76 Score=32.58 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 132 DLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 132 ~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
.|...+..++..+..++..+......++........++.++..|.+++.-
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444555566666666665543
No 101
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.67 E-value=0.5 Score=35.10 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH
Q psy16189 95 ERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSL----EAEAYKTKRLQE 170 (262)
Q Consensus 95 e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l----e~~~~~~~~~e~ 170 (262)
+.-+..++..+..........+...+..+.++...+..|..+++.+.++...+...+.+..... ......+..++.
T Consensus 10 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~ 89 (129)
T 3tnu_B 10 ESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444555555555566666666666666655555555544433 233444555666
Q ss_pred HHHHHHHHHHHH
Q psy16189 171 EIAQLRRKTERM 182 (262)
Q Consensus 171 e~~~l~~~~~~~ 182 (262)
++..++..+.+.
T Consensus 90 eL~~~r~e~~~q 101 (129)
T 3tnu_B 90 ALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 666666655554
No 102
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.67 E-value=1.1 Score=34.29 Aligned_cols=46 Identities=30% Similarity=0.438 Sum_probs=21.1
Q ss_pred HHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 36 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 36 ~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
...+...+....+|+.+..........+...+..++.|+..|...+
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=94.44 E-value=0.035 Score=35.50 Aligned_cols=41 Identities=32% Similarity=0.677 Sum_probs=31.1
Q ss_pred Ccccccccccccce---eccccccccHHHHHHHhccCCCCccCCC
Q psy16189 206 LTCPSCKVKRKDAV---LTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 206 ~~C~iC~~~~~~~v---~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
..|..|...+.+.. ...|++.||.+| +..+...-+.||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCCC
Confidence 46999999986543 459999999999 444444567799983
No 104
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.022 Score=49.98 Aligned_cols=55 Identities=22% Similarity=0.529 Sum_probs=40.7
Q ss_pred hccccCccccccccccccee-ccccccccHHHH---HHHhccCCCCccCCCcccCCCCc
Q psy16189 201 EYKETLTCPSCKVKRKDAVL-TKCFHVFCWDCL---RTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~-l~CgH~fC~~Ci---~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
...-.+.||+-...+..|+. ..|.|.-|++-. ......+.+.||+|+..+...++
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 34556899999999999975 599999777652 22223456789999998876654
No 105
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.21 E-value=0.4 Score=35.75 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH
Q psy16189 95 ERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSL----EAEAYKTKRLQE 170 (262)
Q Consensus 95 e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l----e~~~~~~~~~e~ 170 (262)
+.-+..++..+..........+...+..+.++...+..|..+++.+.++...+...+.+..... ......+..++.
T Consensus 12 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 12 EEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91 (131)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444444444444555555555555555555555555555444443332 233344555566
Q ss_pred HHHHHHHHHHHH
Q psy16189 171 EIAQLRRKTERM 182 (262)
Q Consensus 171 e~~~l~~~~~~~ 182 (262)
++..++..+.+.
T Consensus 92 eL~~~r~em~~q 103 (131)
T 3tnu_A 92 QLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 106
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.11 E-value=1 Score=31.83 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 68 DILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147 (262)
Q Consensus 68 ~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~ 147 (262)
+.+...+..|+...+...+....++..-+........++.+ +..++..+..++..+..+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~e---------------------i~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEE---------------------QQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 44555555566555554444444444333333333333333 333333333344444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 148 QQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 148 ~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
...+......++........++.++..|.+++.-
T Consensus 64 ~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 64 SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444554455555666666666666543
No 107
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.86 E-value=1.4 Score=32.82 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy16189 24 AFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI-DAMHTAIRKLEEKERYLQTVL 102 (262)
Q Consensus 24 a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~-~~~~~~i~~l~e~e~~l~~~i 102 (262)
.|+.+......+...+...+....+|..+..........+...+..++.|+..|.+.+ +..+..+..-.-.-..+..++
T Consensus 26 ~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~ 105 (135)
T 2e7s_A 26 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILN 105 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666778888888999999888888888888888899999888888766 444555543322223333334
Q ss_pred HHHHHHHH
Q psy16189 103 TNVEKELH 110 (262)
Q Consensus 103 ~~lekel~ 110 (262)
..|+.++.
T Consensus 106 ~~L~~ql~ 113 (135)
T 2e7s_A 106 KRLTEQLR 113 (135)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 44444433
No 108
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.78 E-value=1.2 Score=31.49 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 70 LHEQVNALKLQIDAMHTAIR 89 (262)
Q Consensus 70 l~~e~~~l~~~~~~~~~~i~ 89 (262)
+...+..|+...+...+...
T Consensus 7 IKkKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333
No 109
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.42 E-value=0.056 Score=47.29 Aligned_cols=55 Identities=20% Similarity=0.469 Sum_probs=40.5
Q ss_pred hccccCccccccccccccee-ccccccccHHHH---HHHhccCCCCccCCCcccCCCCc
Q psy16189 201 EYKETLTCPSCKVKRKDAVL-TKCFHVFCWDCL---RTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 201 ~~~~~~~C~iC~~~~~~~v~-l~CgH~fC~~Ci---~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
.+.-.+.||+-...+..|+. ..|.|.-|++-. ......+.+.||+|+..+...++
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 34556899999999999965 599999776643 22223456789999999876654
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.13 E-value=2.6 Score=38.39 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16189 132 DLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQ 174 (262)
Q Consensus 132 ~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~ 174 (262)
+|+..+..|+..|...-..+..+..-+++.+.++++||..|+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333344444555555555566666655443
No 111
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.98 E-value=1.6 Score=32.81 Aligned_cols=56 Identities=7% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 99 QTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEK 154 (262)
Q Consensus 99 ~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 154 (262)
+..+..|+.++......+..+++.+....-.+..+..+++.++.++..++..+..+
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556665555555555555555555555555555554444444444433333
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.92 E-value=0.12 Score=35.63 Aligned_cols=47 Identities=17% Similarity=0.489 Sum_probs=36.7
Q ss_pred cCccccccccccc----ceec---cccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKD----AVLT---KCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|.||.+..-- -++. -|+-..|..|..--...+...||-|++++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999997522 1333 778888999998877778888999999995
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.89 E-value=1.7 Score=30.65 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 59 LHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD 117 (262)
Q Consensus 59 ~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~ 117 (262)
+..++..+++........+...+........++.+....+..++..++.++......+.
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666677777777766665544443
No 114
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=92.69 E-value=0.17 Score=38.86 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=29.8
Q ss_pred cCcccccccccc-----cceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRK-----DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~-----~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
...|.+|..+|. ..+...|.|.+|..|-...-......|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 488999999863 23566999999999973221223455777754
No 115
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.54 E-value=0.13 Score=35.84 Aligned_cols=46 Identities=28% Similarity=0.698 Sum_probs=35.9
Q ss_pred cCcccccccccccceecccc-ccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCF-HVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|-.|....+ -.+.|. |.+|..|+...+. ....||+|+.++...
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHh-hccCCcccCCcCCcc
Confidence 467998986665 466775 8889999999877 455699999998754
No 116
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.25 E-value=3 Score=31.87 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 70 LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQ 149 (262)
Q Consensus 70 l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~ 149 (262)
++..+......++..-..|..|++.-+.....+..|+-.-....+..+.+..++..+.....+.....+.....+..++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444433333333333333333333333333444444444444444444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy16189 150 VVTEKTSSLEAEAYKTKRLQEEIA 173 (262)
Q Consensus 150 ~~~~~~~~le~~~~~~~~~e~e~~ 173 (262)
.+..+...+.....+.+.+..+++
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 117
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=91.50 E-value=0.019 Score=42.32 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=30.2
Q ss_pred Cccccccccccc----ceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 206 LTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 206 ~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
..|..|...|.- ...-.||.+||..|...... ..+.|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 679999998853 24559999999999876554 3677888854
No 118
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=91.17 E-value=0.039 Score=49.58 Aligned_cols=45 Identities=20% Similarity=0.592 Sum_probs=0.0
Q ss_pred Ccccccccccc----cceeccccccccHHHHHHHhcc------CCCCccCCCccc
Q psy16189 206 LTCPSCKVKRK----DAVLTKCFHVFCWDCLRTRYET------RQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~----~~v~l~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~ 250 (262)
..|..|...|. ....-.||++||..|....+.. ..+.|-.|-..+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45999999874 2345699999999999765421 245688886544
No 119
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.70 E-value=3.5 Score=29.63 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 102 LTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181 (262)
Q Consensus 102 i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~ 181 (262)
-.-|+.+|....+.+....-.....++....|+..++..+.+. +..+.++..++.....+++.+..+++.+++....
T Consensus 27 T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 27 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 3445555555544444333334444444555555555544443 3446666666666666777777777777766554
Q ss_pred H
Q psy16189 182 M 182 (262)
Q Consensus 182 ~ 182 (262)
+
T Consensus 104 ~ 104 (121)
T 3mq7_A 104 L 104 (121)
T ss_dssp H
T ss_pred h
Confidence 4
No 120
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.57 E-value=2.8 Score=28.22 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 49 LMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 49 l~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~ 112 (262)
|+++...+.++..++...+..|+..++.|+..++.+...-.+++..-+.+...+..---++..+
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5667777777777777777888888888887777666555444444444433333333333333
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.07 E-value=10 Score=34.08 Aligned_cols=14 Identities=36% Similarity=0.147 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHH
Q psy16189 11 EEALLNEMEVTGQA 24 (262)
Q Consensus 11 ~~~l~~Eie~~~~a 24 (262)
......||+.++.+
T Consensus 323 ~~eF~~Eve~L~~i 336 (487)
T 3oja_A 323 SETERLECERENQA 336 (487)
T ss_dssp --CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 45566777777654
No 122
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=90.02 E-value=0.061 Score=46.33 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=32.7
Q ss_pred ccCcccccccccccceec----ccc--ccccHHHHHHHhccCCCCccCCCcc
Q psy16189 204 ETLTCPSCKVKRKDAVLT----KCF--HVFCWDCLRTRYETRQRKCPKCNAA 249 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l----~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~ 249 (262)
..-.||+|.....-.++. .=| |.+|+-|-..|-. ...+||+|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 357899999987655443 244 5669999888655 45679999885
No 123
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=89.98 E-value=0.31 Score=35.72 Aligned_cols=45 Identities=16% Similarity=0.340 Sum_probs=36.0
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+.|..|...+... ....=|..||..|....+. .+|+.|+.++...
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDPE 76 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCTT
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCcC
Confidence 7789999888663 4567799999999887654 5799999999754
No 124
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=89.69 E-value=0.82 Score=34.22 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=29.0
Q ss_pred ccCcccccccccc-----cceeccccccccHHHHHHHhc---cCCCCccCCCc
Q psy16189 204 ETLTCPSCKVKRK-----DAVLTKCFHVFCWDCLRTRYE---TRQRKCPKCNA 248 (262)
Q Consensus 204 ~~~~C~iC~~~~~-----~~v~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 248 (262)
....|.+|...|. ..+...|.|.+|..|-..... .....|-.|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3578999999883 225568888888888654311 11344777754
No 125
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.54 E-value=0.31 Score=36.92 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=32.2
Q ss_pred cCcccccccccccceeccccccccHHHHHHHh----------ccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY----------ETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~ 248 (262)
...|.+|..-=.--..-.|..+||..|+.+.+ ..+...||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46799998744322233899999999999755 346788999975
No 126
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.52 E-value=10 Score=33.13 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 13 ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLE 92 (262)
Q Consensus 13 ~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~ 92 (262)
-+..-|+.|....++++..+..--+-+..+-+.+.+-.++...-+..|.... +.|+..+.-|+..++.+-..|..|+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s---~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN---EDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444455555555555544444444444444444444444444444444333 5566677777777776666777676
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 93 EKERYLQTVLTNVEKELH 110 (262)
Q Consensus 93 e~e~~l~~~i~~lekel~ 110 (262)
...+.+...|..||..|.
T Consensus 141 ~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 141 KNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666677777776663
No 127
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.39 E-value=14 Score=34.55 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 12 EALLNEMEVTGQAFEDMQ-------EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAM 84 (262)
Q Consensus 12 ~~l~~Eie~~~~a~e~~q-------~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~ 84 (262)
+.+..+++.+...|...- .-.+..++......+.++..-.-+...+.....-+..+++++.+.+.|......
T Consensus 434 ~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~- 512 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRK- 512 (592)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 567777888877776543 344566666666666665433222223333333444455555555555543332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 85 HTAIRKLEEKERYLQTVLTNVEK 107 (262)
Q Consensus 85 ~~~i~~l~e~e~~l~~~i~~lek 107 (262)
.-..++.+++.+...+..|..
T Consensus 513 --~~~~~~~~~~~~~e~~~ql~~ 533 (592)
T 1f5n_A 513 --NEQMMEQKERSYQEHLKQLTE 533 (592)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 222334555555555555444
No 128
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=89.09 E-value=0.27 Score=36.03 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=37.7
Q ss_pred Ccccccccccc---cceeccccccccHHHHHHHhccCCCCccCCCcccCCCCc
Q psy16189 206 LTCPSCKVKRK---DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 206 ~~C~iC~~~~~---~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~ 255 (262)
+.|..|...+. ......=|..||..|....+.. ..+|..|+.++...++
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 67899998885 3456677899999999987763 1269999999976554
No 129
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.05 E-value=2.9 Score=30.58 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQ 80 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~ 80 (262)
..+.|+.||+.+...++.+....++.+-+ +.+.+..|.+|..-.......+..+.+.|..++..++..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~q---l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQ---LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998888877655 456778888888777655445555666666666655443
No 130
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.97 E-value=3.8 Score=27.56 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQL 175 (262)
Q Consensus 164 ~~~~~e~e~~~l 175 (262)
+++.++.+++.+
T Consensus 49 Kiq~lE~eld~~ 60 (81)
T 1ic2_A 49 KLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 131
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.73 E-value=5 Score=28.59 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 147 AQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 147 ~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
++..+.--......++....++..+.+.|..++..++..
T Consensus 67 LkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 67 LKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 344444445566667777777777777777777766654
No 132
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.62 E-value=4.1 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 88 IRKLEEKERYLQTVLTNVEKELHLRNQA 115 (262)
Q Consensus 88 i~~l~e~e~~l~~~i~~lekel~~~~~~ 115 (262)
+.+|+.+....-..|.-|.-++..++..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 133
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.57 E-value=4.4 Score=27.70 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHHHHHHH
Q psy16189 132 DLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI-EQAGTLDEVMMEEIR 200 (262)
Q Consensus 132 ~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~-~~~~~~~~~l~~e~~ 200 (262)
.+..+...+..++..++..+......++.+......++.++..+++.++..--. .......+.|.+++.
T Consensus 11 ~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 11 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555556666666677777777777777766654322 222333344444443
No 134
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.02 E-value=15 Score=33.40 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16189 75 NALKLQIDA 83 (262)
Q Consensus 75 ~~l~~~~~~ 83 (262)
+.+...+++
T Consensus 60 rDltkrINE 68 (562)
T 3ghg_A 60 QDFTNRINK 68 (562)
T ss_dssp HHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 333333333
No 135
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.58 E-value=14 Score=32.30 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q psy16189 154 KTSSLEAEAYKTKRLQEEI 172 (262)
Q Consensus 154 ~~~~le~~~~~~~~~e~e~ 172 (262)
+..-+++.+.++++||..|
T Consensus 139 Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433
No 136
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.47 E-value=8 Score=29.45 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=11.1
Q ss_pred HHhhhhhhHHHHHHHHHhhH
Q psy16189 37 QQLREKDDANFKLMTERIKS 56 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka 56 (262)
...+.+||.+..+..+...+
T Consensus 13 n~qs~LeD~L~~~R~el~~~ 32 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQ 32 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHH
Confidence 34445666666665555443
No 137
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.29 E-value=16 Score=32.80 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALK 78 (262)
Q Consensus 67 k~~l~~e~~~l~ 78 (262)
+..++..+...+
T Consensus 369 ~~~le~~~~~~~ 380 (487)
T 3oja_A 369 KKALDEQVSNGR 380 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 138
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=86.85 E-value=0.29 Score=34.85 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=21.2
Q ss_pred cccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 215 RKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 215 ~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
+..+....||+.|+ . .+ ..+..||.|+.....
T Consensus 65 v~p~~C~~CG~~F~----~-~~-~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK----A-EI-NIPSRCPKCKSEWIE 96 (105)
T ss_dssp ECCCBBTTTCCBCC----C-CS-SCCSSCSSSCCCCBC
T ss_pred EECcChhhCcCeec----c-cC-CCCCCCcCCCCCccC
Confidence 45567789999992 1 11 245679999876543
No 139
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=86.71 E-value=0.56 Score=36.81 Aligned_cols=46 Identities=24% Similarity=0.608 Sum_probs=30.8
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
+.|..|...+.......=|..||..|....+. .+|..|+.++...+
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 133 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTTS---CCCTTTCCCCCSSC
T ss_pred CccCCCCCccCCCceeECCEeeecCccccccc---cccccCCCccCCCc
Confidence 55666766665443445577788888776543 56888888886543
No 140
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=86.48 E-value=0.72 Score=35.68 Aligned_cols=46 Identities=24% Similarity=0.608 Sum_probs=34.9
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
+.|..|...+.......=|..||..|....+. .+|..|+.++...+
T Consensus 34 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 79 (169)
T ss_dssp SBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTTS
T ss_pred CccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCCc
Confidence 67888888876655566788899999888665 46888888876543
No 141
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=86.07 E-value=0.5 Score=33.03 Aligned_cols=46 Identities=24% Similarity=0.500 Sum_probs=34.1
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
+.|..|...+... ....=|..||..|....+ .++|..|+.++...+
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVAGD 80 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCSSS
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccccCC
Confidence 6688888877554 345678889999976543 357999999997543
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=85.24 E-value=0.36 Score=33.50 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=30.5
Q ss_pred Cccccccccccc----ceeccccccccHHHHHHHhcc-----CCCCccCCCccc
Q psy16189 206 LTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYET-----RQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 250 (262)
..|.+|...|.- ...-.||++||..|....... ..+.|..|-..+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 569999998842 344599999999998764421 234566664433
No 143
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=85.01 E-value=0.33 Score=33.04 Aligned_cols=46 Identities=22% Similarity=0.576 Sum_probs=30.8
Q ss_pred cCcccccccccccc----eeccccccccHHHHHHHhc-----cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYE-----TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~ 250 (262)
...|.+|...|.-. ..-.||++||..|...... ...+.|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 35799999988532 3459999999999876432 1224476665443
No 144
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=84.82 E-value=0.34 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=23.3
Q ss_pred cCccccccccccc----ceeccccccccHHHHHH
Q psy16189 205 TLTCPSCKVKRKD----AVLTKCFHVFCWDCLRT 234 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~ 234 (262)
...|.+|...|.- ...-.||++||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3579999998853 23458999999999764
No 145
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=84.82 E-value=9.7 Score=27.96 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 87 AIRKLEEKERYLQTVLTNVEKEL 109 (262)
Q Consensus 87 ~i~~l~e~e~~l~~~i~~lekel 109 (262)
.+.+++......+..+..|..++
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~ 69 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAEL 69 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHH
Confidence 33444443333333344433333
No 146
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=84.67 E-value=0.08 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=22.5
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....+. ......++..||.|+..|...
T Consensus 14 ~~~C~~C~k~F~~~~~l~----------~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQ----------LFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp EEECSSSCCEEEHHHHHH----------HEETTTTEEBCSSSCCBCEEC
T ss_pred CccCCCCCchhccHHHhH----------hhcCCCCCEECCCCCCccccC
Confidence 356777777665432221 111122456799999999654
No 147
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=84.46 E-value=2.6 Score=39.30 Aligned_cols=25 Identities=4% Similarity=0.252 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 61 KLAREEKDILHEQVNALKLQIDAMH 85 (262)
Q Consensus 61 ~~~~~~k~~l~~e~~~l~~~~~~~~ 85 (262)
..+.+++..++..+..+.......+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333
No 148
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=84.32 E-value=0.39 Score=32.83 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=31.1
Q ss_pred cCccccccccccc----ceeccccccccHHHHHHHhc-------cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYE-------TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 250 (262)
...|.+|...|.- ...-.||++||..|...... ...+.|..|-..+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 3579999998853 24459999999999876422 1234577775444
No 149
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=84.16 E-value=0.84 Score=33.90 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=31.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHh----------ccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY----------ETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~ 248 (262)
...|.+|..--.-...-.|...||..|+.+.+ ..+...||.|+.
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35599998643322223889999999999753 346688999965
No 150
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.13 E-value=9.6 Score=27.32 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147 (262)
Q Consensus 98 l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~ 147 (262)
....++.|++++..++...+.+..++-++.+...+|.+.-......+..+
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 34456677777777776666666666666666666655544444444443
No 151
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=84.05 E-value=0.2 Score=32.93 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=29.1
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
+-..+.||+|.....-.. . .+.-.||.|+..|...|=.++.+.
T Consensus 5 LL~iL~CP~ck~~L~~~~--~---------------~~~LiC~~cg~~YPI~dGIPvmL~ 47 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQ--D---------------KQELWSRQAKLAYPIKDGIPYMLE 47 (68)
T ss_dssp SSCCCBCSSSCCBCEEET--T---------------TTEEEETTTTEEEEEETTEECCCT
T ss_pred HhhheECCCCCCcCeEeC--C---------------CCEEEcCCCCcEecCCCCeeeeCh
Confidence 455688999997553211 1 133469999999988887777664
No 152
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=84.01 E-value=0.93 Score=33.28 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=35.7
Q ss_pred Ccccccccccc---cceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRK---DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~---~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+.|..|...+. .+....=|..||..|....+.. ..+|+.|+.++...
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRAY 79 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECTT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCcc
Confidence 67889998885 2456677899999999887652 12699999988653
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.91 E-value=0.27 Score=40.00 Aligned_cols=32 Identities=25% Similarity=0.569 Sum_probs=24.6
Q ss_pred ccCccccccccccc----ceeccccccccHHHHHHH
Q psy16189 204 ETLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTR 235 (262)
Q Consensus 204 ~~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~ 235 (262)
....|++|...|.- ...-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 34679999998842 345599999999998654
No 154
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.25 E-value=10 Score=26.98 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 41 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~e 41 (262)
-+.+.|..-+.....++..++.+-..+-..+..
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655544444443333
No 155
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=82.81 E-value=0.86 Score=36.59 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=14.5
Q ss_pred eeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 219 VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 219 v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
++..|||++=. ..+..||.|+.+=
T Consensus 173 ~C~~CG~i~~g--------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 173 LCPICGYIHKG--------EDFEKCPICFRPK 196 (202)
T ss_dssp ECSSSCCEEES--------SCCSBCTTTCCBG
T ss_pred EECCCCCEEcC--------cCCCCCCCCCCCh
Confidence 44566666432 1346899998853
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=82.38 E-value=0.36 Score=39.51 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=31.4
Q ss_pred cCccccccccccc----ceeccccccccHHHHHHHhc-------cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYE-------TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 250 (262)
...|.+|...|.- ...-.||++||..|...+.. ...+.|..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4579999998742 34569999999999875332 1235577775433
No 157
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.33 E-value=0.41 Score=33.11 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=31.1
Q ss_pred cCcccccccccccc----eeccccccccHHHHHHHhc------cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYE------TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~------~~~~~CP~Cr~~~ 250 (262)
...|.+|...|.-. ..-.||++||..|...... ...+.|-.|-..+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 35799999988532 3459999999999865332 1235577775433
No 158
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=82.19 E-value=0.53 Score=36.77 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=14.8
Q ss_pred eeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 219 VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 219 v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
++..|||++-. .-+..||+|+.|-
T Consensus 140 ~C~~CG~i~~~--------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 140 ICPICGYTAVD--------EAPEYCPVCGAPK 163 (170)
T ss_dssp ECTTTCCEEES--------CCCSBCTTTCCBG
T ss_pred EeCCCCCeeCC--------CCCCCCCCCCCCH
Confidence 44566776541 1234899999753
No 159
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.92 E-value=0.47 Score=32.40 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=23.2
Q ss_pred Cccccccccccc----ceeccccccccHHHHHHH
Q psy16189 206 LTCPSCKVKRKD----AVLTKCFHVFCWDCLRTR 235 (262)
Q Consensus 206 ~~C~iC~~~~~~----~v~l~CgH~fC~~Ci~~~ 235 (262)
..|.+|...|.- ...-.||++||..|....
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 579999998842 234599999999997653
No 160
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=81.09 E-value=0.78 Score=36.17 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=34.8
Q ss_pred Cccccccccccc---ceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~---~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+.|..|...+.. +....=|..||..|....+.. ..+|+.|+.++...
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPAS 82 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECTT
T ss_pred cccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccccC
Confidence 678888888764 456677889999998887652 11599999888653
No 161
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=80.98 E-value=0.77 Score=27.71 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=25.7
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....+. .| +......++..||.|+..|...
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IH------LRTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HH------HHHHHCCCCEECSSSSCEESSH
T ss_pred CccCCCCcchhCChHHHH-HH------HHHcCCCCCcCCCCCcchhCCH
Confidence 478999998887653321 12 1122234567899999988653
No 162
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.87 E-value=0.14 Score=34.83 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=6.3
Q ss_pred Cccccccccc
Q psy16189 206 LTCPSCKVKR 215 (262)
Q Consensus 206 ~~C~iC~~~~ 215 (262)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 5677777654
No 163
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=80.64 E-value=0.13 Score=35.96 Aligned_cols=40 Identities=25% Similarity=0.575 Sum_probs=26.1
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..||.|...+.. .=|+.+|..|-..+. ....||.|+.++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~--~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE--MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE--EEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhh--ccccCcchhhHHH
Confidence 889999986532 124445888865422 2345999988874
No 164
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=80.34 E-value=0.36 Score=31.56 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=29.0
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
+-..+.||+|.....-.. ..+.-.||.|+..|...|=.++.+.
T Consensus 7 LLeiL~CP~ck~~L~~~~-----------------~~g~LvC~~c~~~YPI~dGIPvmL~ 49 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYLE-----------------SEQLLVNERLNLAYRIDDGIPVLLI 49 (67)
T ss_dssp GTCCCBCTTTCCBCEEET-----------------TTTEEEETTTTEEEEEETTEECCCS
T ss_pred HHHHhCCCCCCCcCeEeC-----------------CCCEEEcCCCCccccCCCCEeeeCh
Confidence 556789999998554211 1234469999998887777777654
No 165
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=80.09 E-value=0.21 Score=32.79 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=29.1
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
+-..+.||+|.....-.. ..+.-.||.|+..|...|=.++.+.
T Consensus 5 LL~iL~CP~ck~~L~~~~-----------------~~~~LiC~~cg~~YPI~dGIPvmL~ 47 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFDK-----------------SKDELICKGDRLAFPIKDGIPMMLE 47 (68)
T ss_dssp CEEECBCTTTCCBCEEET-----------------TTTEEEETTTTEEEEEETTEECCCG
T ss_pred HhhheECCCCCCcCeEeC-----------------CCCEEEcCCCCcEecCCCCeeeeCh
Confidence 445688999997543211 1234569999999988887777664
No 166
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=79.76 E-value=11 Score=25.18 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 22 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 22 ~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
..-|++.+.-...+++.|.++.-.+..|-+|+.....+..+.. .++..|+.+++.....|..|.+
T Consensus 11 ~~~~ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK-------~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 11 QREQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATK-------AEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666777778888888888888888888887766655544 4555555555554444444433
No 167
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.42 E-value=13 Score=25.68 Aligned_cols=9 Identities=56% Similarity=0.874 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy16189 168 LQEEIAQLR 176 (262)
Q Consensus 168 ~e~e~~~l~ 176 (262)
+..++..++
T Consensus 82 l~~~~~~~k 90 (93)
T 3s4r_A 82 LAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 168
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.34 E-value=13 Score=25.78 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 85 HTAIRKLEEKERYLQTVLTNVEKELHLRNQAM 116 (262)
Q Consensus 85 ~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~ 116 (262)
...+..++..+..+...+..++++-..+...+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el 41 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENL 41 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444445555555555555555544444333
No 169
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=79.20 E-value=0.27 Score=32.49 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
+-..+.||+|.....-.. ..+.-.||.|+..|...|=.++.+.
T Consensus 5 LL~iL~CP~ck~~L~~~~-----------------~~~~LiC~~cg~~YPI~dGIPvmL~ 47 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQR-----------------AQAELVCNADRLAFPVRDGVPIMLE 47 (70)
T ss_dssp CCCCCBCTTTCCBEEEET-----------------TTTEEEETTTTEEEEEETTEECCCG
T ss_pred HhhheECCCCCCcCEEeC-----------------CCCEEEcCCCCceecCCCCeeeeCh
Confidence 455688999998543211 1234469999999988877777653
No 170
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=78.93 E-value=37 Score=30.69 Aligned_cols=22 Identities=18% Similarity=0.139 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy16189 9 NEEEALLNEMEVTGQAFEDMQE 30 (262)
Q Consensus 9 ~~~~~l~~Eie~~~~a~e~~q~ 30 (262)
+...++-.|+.++.+|..+.+.
T Consensus 9 ~~la~yq~elarvqkana~aka 30 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKA 30 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666543
No 171
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=78.90 E-value=0.28 Score=29.37 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=17.6
Q ss_pred eccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 220 LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 220 ~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
.+.||+.|-.+=+... ...+||.||-.+
T Consensus 6 C~rCg~~fs~~el~~l---P~IrCpyCGyri 33 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL---PGVRCPYCGYKI 33 (48)
T ss_dssp CCCTTTTCCCCCSCCC---SSSCCTTTCCSC
T ss_pred eeccCCCccHHHHhhC---CCcccCccCcEE
Confidence 4678888765443321 235699998765
No 172
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.73 E-value=0.58 Score=29.78 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=22.8
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....+.= .+...||.|+..|...
T Consensus 18 ~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCC
T ss_pred CeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCH
Confidence 4779999988866543322 2456677777777544
No 173
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=78.57 E-value=0.62 Score=37.07 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=7.6
Q ss_pred CCccCCCcc
Q psy16189 241 RKCPKCNAA 249 (262)
Q Consensus 241 ~~CP~Cr~~ 249 (262)
-.||.|+.|
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 389999986
No 174
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=78.47 E-value=0.75 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.621 Sum_probs=17.6
Q ss_pred ccHHHHHHHhccCC-------CCccCCCccc
Q psy16189 227 FCWDCLRTRYETRQ-------RKCPKCNAAF 250 (262)
Q Consensus 227 fC~~Ci~~~~~~~~-------~~CP~Cr~~~ 250 (262)
+|..|...+-.... .-||.|+-.+
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCee
Confidence 49999988665432 3399998866
No 175
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=78.17 E-value=0.78 Score=27.70 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=23.6
Q ss_pred cCcccccccccccceeccccccccHHHHH-HHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLR-TRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~-~~~~~~~~~CP~Cr~~~~~ 252 (262)
.+.|++|...|.....|. .|. . .....++..|+.|+..|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLN-GHI------KQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CEECSSSCCEESSHHHHH-HHH------HHTSCCCCCCCSSSSCCSSCC
T ss_pred CeECCCCCcccCCHHHHH-HHH------HHhcCCCCCccCCCCCCCCCC
Confidence 467888887776542221 010 0 0112345789999999875
No 176
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.86 E-value=2.4 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.510 Sum_probs=13.3
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHh
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRY 236 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~ 236 (262)
+.|..|...+... ....=|..||..|....+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 3344444444322 223334455555554444
No 177
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.72 E-value=17 Score=26.04 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy16189 70 LHEQVNALKLQID 82 (262)
Q Consensus 70 l~~e~~~l~~~~~ 82 (262)
|..++..|+...+
T Consensus 40 Lq~El~~lr~~~~ 52 (111)
T 2v66_B 40 LEDDLSQTRAIKE 52 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 178
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=77.67 E-value=0.85 Score=28.82 Aligned_cols=42 Identities=29% Similarity=0.554 Sum_probs=25.9
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....|. .| .......++..|+.|+..|...
T Consensus 4 py~C~~C~k~F~~~~~L~-~H------~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLS-RH------RRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CEECTTTCCEESSHHHHH-HH------HHHHHTCCCEECTTTCCEESSH
T ss_pred CccCCCCCCEeCCHHHHH-HH------HHHhCCCcCeECCCCCCCcCCH
Confidence 467888888776553221 11 1122234567899999999754
No 179
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.60 E-value=14 Score=25.06 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 131 ADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTE 180 (262)
Q Consensus 131 ~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~ 180 (262)
..++..+..++.++.+++..+.....+....-.-+-.++.++..+++=++
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33444444445555555555555555555555555666667766665443
No 180
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=76.96 E-value=12 Score=25.03 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 99 QTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLE 138 (262)
Q Consensus 99 ~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~ 138 (262)
..++..||..++-....++.+..-+.+..+.+..+..++.
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333333333333333
No 181
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=76.55 E-value=1.9 Score=37.99 Aligned_cols=44 Identities=16% Similarity=0.499 Sum_probs=30.4
Q ss_pred Ccccccccccccceec--cccccccHHHHHHHhcc---------CCCCccCCCcc
Q psy16189 206 LTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---------RQRKCPKCNAA 249 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l--~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~ 249 (262)
..|.+|...-.-...- .|...||..||..++.. ....|-.|...
T Consensus 94 ~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 94 SYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred ccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4577777643222223 89999999999988853 35679999653
No 182
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=76.32 E-value=0.41 Score=31.48 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=28.7
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d~~~iy~~ 261 (262)
+-..+.||+|.....-.. ..+.-.||.|+..|...|=.++.+.
T Consensus 5 LLeiL~CP~ck~~L~~~~-----------------~~~~LiC~~cg~~YPI~dGIPvmL~ 47 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSA-----------------DKTELISKGAGLAYPIRDGIPVMLE 47 (69)
T ss_dssp GGGTCCCTTTCCCCEECT-----------------TSSEEEETTTTEEEEEETTEECCCG
T ss_pred HHhheeCCCCCCcCeEeC-----------------CCCEEEcCCCCcEecCcCCeeeeCh
Confidence 445688999997553110 0134469999999988877777653
No 183
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=76.17 E-value=2.5 Score=27.64 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=31.2
Q ss_pred Cccccccccccc-ceeccccccccH-HHHHHHhccCCCCccCCCccc
Q psy16189 206 LTCPSCKVKRKD-AVLTKCFHVFCW-DCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~~-~v~l~CgH~fC~-~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
+.|..|...+.. +....=|..||. .|....+. .+|..|+...
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 678899888765 445577899999 69887655 4688887543
No 184
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=76.09 E-value=2.8 Score=28.52 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=22.9
Q ss_pred cccCcccccccccccceec---cccccccHHHHHHH
Q psy16189 203 KETLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTR 235 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~ 235 (262)
..+..|+||.. |....++ -|+..|-..|+.+.
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 34678999985 3344444 56788889999985
No 185
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.15 E-value=19 Score=25.32 Aligned_cols=18 Identities=33% Similarity=0.222 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQIDA 83 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~~ 83 (262)
+|.++..+|..|+..++.
T Consensus 24 EKsal~YqVdlLKD~LEe 41 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLE 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544443
No 186
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=74.63 E-value=0.7 Score=27.90 Aligned_cols=41 Identities=29% Similarity=0.671 Sum_probs=24.0
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+.|++|...|.....+. .| +......++..||.|+..|...
T Consensus 2 ~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK-KH------IRTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CBCTTTCCBCSSHHHHH-HH------HHHTSSCCCEECSSSSCEESSH
T ss_pred CcCCCCcCcCCCHHHHH-HH------HHhcCCCCCccCCCCCchhcCH
Confidence 56888888776653221 11 1111123456799999998653
No 187
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=74.45 E-value=1.1 Score=32.28 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=21.4
Q ss_pred cCcccccccccccceeccccccccH
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCW 229 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~ 229 (262)
...|..|...-...+.+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 3569999988777789999999995
No 188
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=74.31 E-value=2.7 Score=33.10 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=25.1
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhcc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYET 238 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~ 238 (262)
+.|..|...+... ....=|..||..|....+..
T Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 6788888887654 34456888999999988764
No 189
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=74.30 E-value=3.2 Score=27.77 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=11.3
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
....||.|+..|...
T Consensus 64 ~~~~C~~C~~~f~~~ 78 (95)
T 2yt9_A 64 KPYICQSCGKGFSRP 78 (95)
T ss_dssp SSBCCSSSCCCBSSH
T ss_pred CceECCCccchhCCH
Confidence 456799999988653
No 190
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=74.25 E-value=2.7 Score=30.52 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=28.1
Q ss_pred Ccccccccccc-c-ceeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 206 LTCPSCKVKRK-D-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 206 ~~C~iC~~~~~-~-~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
+.|..|...+. . .....=|..||..|....+.. +|..|+.+.
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~---~~~~~~~~~ 80 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI---NGGSGGSGG 80 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH---HTCCCCCCS
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc---ccCCCCCCC
Confidence 66888888773 2 345566888999998877653 455555443
No 191
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=74.10 E-value=2.6 Score=32.36 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=28.7
Q ss_pred Ccccccccccccceec--cccccccHHHHHHHhccC---------CCCccCCCc
Q psy16189 206 LTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYETR---------QRKCPKCNA 248 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l--~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~ 248 (262)
..|.+|..--.-...- .|...||..||...+..+ +..|-.|..
T Consensus 80 ~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 80 SYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred ceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 5577777632111111 688999999999887643 456999964
No 192
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=73.82 E-value=6.7 Score=36.53 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 14 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 14 l~~Eie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
.-.+.+.+..-..++++...+.-..|.+.++.+..|..+.-.|......+......++.++..|..+...+.+.-.+|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~ 412 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLED 412 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344445555555555555555556655555555555555554444444444455555555555544444433333333
No 193
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=73.79 E-value=26 Score=26.34 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16189 91 LEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTK 166 (262)
Q Consensus 91 l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~ 166 (262)
|+......-.++..|+.++...+...+...++..+..+.+.-+...++....+.......+.++...+...-..++
T Consensus 43 lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 43 IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556777888888877766666666777777666666666666666655555444444444433333333
No 194
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=73.54 E-value=53 Score=29.73 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 96 RYLQTVLTNVEKELHLRNQAMD----LNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTE 153 (262)
Q Consensus 96 ~~l~~~i~~lekel~~~~~~~~----~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 153 (262)
..++..+...+.++...+.++. .++.++.+........+++.+.++++.+..+.....
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554443 444555555555555666666666655555444333
No 195
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.93 E-value=20 Score=24.71 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 147 AQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKI 185 (262)
Q Consensus 147 ~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~~~~~~~~ 185 (262)
++..+.--......+|....++..+.+.|...+..++..
T Consensus 45 Lk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 45 LKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444556666777777777777777666666553
No 196
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.58 E-value=21 Score=24.72 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 133 LKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRR 177 (262)
Q Consensus 133 l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~ 177 (262)
+...+..++..+.+++..+.....+......-+-.++.++..+++
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444434444444444455555555443
No 197
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=72.25 E-value=1.1 Score=29.74 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=31.4
Q ss_pred cCcccccccccccceec---cccccccHHHHHHHhcc---CCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYET---RQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 252 (262)
...|++|........++ .|..-|-..|+...... +...||.|...+..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 46799999876443233 67666667887654332 45679999876543
No 198
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=71.66 E-value=22 Score=24.55 Aligned_cols=75 Identities=13% Similarity=0.275 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 103 TNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRR 177 (262)
Q Consensus 103 ~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~ 177 (262)
.....-+..-.++++...+.+.-..+........++..+.++.+-..++.....+.+....+.-.++.++..+++
T Consensus 30 g~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 30 GAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333443444444444444434444445555666666666666666777777777777777777777777654
No 199
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.01 E-value=9.1 Score=23.53 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=26.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16189 5 QVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 40 (262)
Q Consensus 5 ~~~~~~~~~l~~Eie~~~~a~e~~q~q~~~~~~~l~ 40 (262)
+..-.+.++|..|++.+.+-++.+..++.-+-.++.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677888888888888888888887777666553
No 200
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=70.84 E-value=2.4 Score=20.83 Aligned_cols=14 Identities=36% Similarity=1.025 Sum_probs=10.7
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
+..||.|+..|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 45799999988654
No 201
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=73.17 E-value=0.89 Score=22.28 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=9.1
Q ss_pred CCccCCCcccCCC
Q psy16189 241 RKCPKCNAAFGAN 253 (262)
Q Consensus 241 ~~CP~Cr~~~~~~ 253 (262)
..||.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4688888877654
No 202
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.76 E-value=1.8 Score=31.44 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=16.8
Q ss_pred eeccccccccHHHHHHHhccCCC-CccCCCccc
Q psy16189 219 VLTKCFHVFCWDCLRTRYETRQR-KCPKCNAAF 250 (262)
Q Consensus 219 v~l~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~ 250 (262)
....|||.|=. ..... .||.|+.+.
T Consensus 75 ~C~~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeC-------CCCCCCcCccccCCC
Confidence 44578887754 12456 799998874
No 203
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=69.69 E-value=22 Score=23.85 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 133 LKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 133 l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~ 178 (262)
+...+..++..+..++..+.....+....-.-+-.++.++..+++=
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444444444444444444444444555566666665543
No 204
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=69.67 E-value=3.8 Score=26.48 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=30.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhcc---CCCCccCCCcc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET---RQRKCPKCNAA 249 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 249 (262)
...|.+|...-.-...-.|...|-..|+...+.. +...||.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4669999864321122288888889998765442 45679999754
No 205
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=69.60 E-value=21 Score=23.55 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEI 172 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~ 172 (262)
..+|...++.+..+...++.++............+.+.+++++
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555555555555555555555555444
No 206
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.46 E-value=0.69 Score=31.54 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=22.7
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..|++|...|.....|. .| +......++..|+.|+..|...
T Consensus 29 h~C~~Cgk~F~~~~~L~-~H------~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQE-RH------LRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp EECTTSCCEESSHHHHH-HH------HHTTSCSSSEECTTSSCEESSH
T ss_pred EECCCCCCCcCcHHHHh-hh------hhhccCCCccCCCCCCCEeCCH
Confidence 45777777666542221 11 0111123456799999999754
No 207
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=69.15 E-value=1.2 Score=27.21 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=23.7
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
+.|++|...|.....+. .|. .......+..||.|+..|...
T Consensus 3 ~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 43 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLK-RHY------RSHTNEKPYPCGLCNRAFTRR 43 (60)
T ss_dssp BCCTTTCCCBSCHHHHH-HHH------HTTTSSCSEECTTTCCEESSH
T ss_pred CcCCCCccccCCHHHHH-HHH------HHhCCCCCccCCCCCCccCCH
Confidence 67888888876542221 010 001122456799999998653
No 208
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.02 E-value=39 Score=26.41 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=4.2
Q ss_pred hhhHHHHHHHHH
Q psy16189 42 KDDANFKLMTER 53 (262)
Q Consensus 42 ~e~~~~kl~~e~ 53 (262)
-|..+.+|+.|.
T Consensus 18 ad~LV~~L~~En 29 (190)
T 4emc_A 18 ADLLVANLVNEN 29 (190)
T ss_dssp --CHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 209
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=68.95 E-value=0.64 Score=31.85 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=19.7
Q ss_pred ccccccccccc-----cee-ccccccccHHHHHHH
Q psy16189 207 TCPSCKVKRKD-----AVL-TKCFHVFCWDCLRTR 235 (262)
Q Consensus 207 ~C~iC~~~~~~-----~v~-l~CgH~fC~~Ci~~~ 235 (262)
.||-|...+.. ++. ..|||.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 48888774421 122 259999999998775
No 210
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=68.87 E-value=4.8 Score=31.57 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=31.2
Q ss_pred Cccccccccccc-ceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~-~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
+.|..|...+.. .....=|+.||..|....+. .+|..|+.+.+.
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~---~kc~~C~~~~g~ 187 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG---PKGFGFGQGAGA 187 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC---CCCCCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhcC---CcCCCCCCcccc
Confidence 557777777643 34456678889999888765 469999887543
No 211
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.87 E-value=65 Score=28.85 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy16189 150 VVTEKTSSLEAEAYKTKRLQEEIA 173 (262)
Q Consensus 150 ~~~~~~~~le~~~~~~~~~e~e~~ 173 (262)
.+..+..-+++.+.++++||..+.
T Consensus 133 ~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555554443
No 212
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=68.84 E-value=29 Score=24.82 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEA 147 (262)
Q Consensus 136 ~l~~l~~~~~~~ 147 (262)
.+..++..+.+.
T Consensus 60 ~L~~Lqq~fsq~ 71 (112)
T 1x79_B 60 LLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 213
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.84 E-value=24 Score=23.81 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 57 NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQ 99 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~ 99 (262)
.+....+....+.+..++..|+-+++.+.-.+..+++.-+.+.
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777666666655555444443
No 214
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=68.83 E-value=2.8 Score=27.08 Aligned_cols=15 Identities=33% Similarity=0.842 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 56 ~~~~C~~C~~~f~~~ 70 (82)
T 2kmk_A 56 KPHKCQVCGKAFSQS 70 (82)
T ss_dssp CCEECTTTSCEESSH
T ss_pred CCCcCCCcchhhCCh
Confidence 456799999988653
No 215
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.57 E-value=2.4 Score=25.65 Aligned_cols=42 Identities=31% Similarity=0.725 Sum_probs=26.4
Q ss_pred cccccccccccceec---cccccccHHHHHHHhc---cCCCCccCCCc
Q psy16189 207 TCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYE---TRQRKCPKCNA 248 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 248 (262)
.|.+|...-....++ .|...|-..|+.+-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888754322222 7777777888865332 34567999965
No 216
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=68.03 E-value=25 Score=23.66 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 10 EEEALLNEMEVTGQAFEDMQEQNSRLL----QQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 10 ~~~~l~~Eie~~~~a~e~~q~q~~~~~----~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
+.+++.+-...+.....++......-+ ..|..++..+.++..+...-.+-|..++.-|-.|+.|+.+-+..+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555555555554433322 344456666666666666666677777777777777776666544
No 217
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=67.59 E-value=1.6 Score=27.89 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=25.3
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....+. .|. ......++..||.|+..|...
T Consensus 14 ~~~C~~C~k~f~~~~~L~-~H~------~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILV-QHQ------RVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CEECSSSCCEESSHHHHH-HHH------HGGGCSCCEECSSSCCEESSH
T ss_pred CccCCCCCCccCCHHHHH-HHH------HhcCCCCCeECCCCCcccCCH
Confidence 477998888776543221 111 111223557799999988653
No 218
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=67.42 E-value=1.3 Score=34.04 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=16.6
Q ss_pred eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 219 VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 219 v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
.+..|||.|=.. .....||.||.++.
T Consensus 134 ~C~~Cg~~~~~~-------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL-------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC-------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC-------CCCCcCCCCCCcce
Confidence 456788877322 11236999998864
No 219
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.40 E-value=2.3 Score=26.92 Aligned_cols=42 Identities=19% Similarity=0.576 Sum_probs=29.0
Q ss_pred cCcccccccccccceec--cccccccHHHHHHHh---ccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRY---ETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l--~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~ 248 (262)
...|.+|... ..+++ .|...|-..|+..-+ ..+...||.|..
T Consensus 11 ~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4679999974 22222 777788888988633 335567999965
No 220
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=67.31 E-value=2.6 Score=20.76 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=10.4
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
+..||.|+..|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 1ard_A 2 SFVCEVCTRAFARQ 15 (29)
T ss_dssp CCBCTTTCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 45799999888653
No 221
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=67.23 E-value=2.2 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=24.1
Q ss_pred cCcccccccccccceeccc-cccccHHHHHHHh
Q psy16189 205 TLTCPSCKVKRKDAVLTKC-FHVFCWDCLRTRY 236 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~C-gH~fC~~Ci~~~~ 236 (262)
..-|.||.+. .....+.| |-.||..|....-
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 4669999986 33456788 8999999998754
No 222
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.17 E-value=68 Score=28.44 Aligned_cols=6 Identities=33% Similarity=0.285 Sum_probs=2.1
Q ss_pred HHHHhH
Q psy16189 151 VTEKTS 156 (262)
Q Consensus 151 ~~~~~~ 156 (262)
+.++..
T Consensus 445 ~~~~~~ 450 (471)
T 3mq9_A 445 VEELEG 450 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 223
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=66.30 E-value=11 Score=25.55 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.0
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
...|+.|+..|..
T Consensus 73 ~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 73 PFKCQECGKGFCQ 85 (106)
T ss_dssp TTSCSSSCCCCSS
T ss_pred CeECCCcCCcccC
Confidence 4679999988864
No 224
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.26 E-value=4 Score=26.08 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=19.6
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|..|...+...++..-|..|...| +.|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC---------FRCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT---------SBCSSSCCBCSS
T ss_pred CcCccCCCEecceEEEECcccccccC---------CEeCCCCCcCCC
Confidence 45777776665544443343333333 345666666654
No 225
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=66.09 E-value=2.5 Score=26.99 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=26.0
Q ss_pred ccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..+.|++|...|.....+. .|. ......+...|+.|+..|...
T Consensus 16 ~~~~C~~C~k~f~~~~~l~-~H~------~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA-SHK------TVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH-HHH------HHHCCCCSEECTTTCCEESCH
T ss_pred CCeECCCCCceeCCHHHHH-HHH------HHcCCCCCEECCCCCchhCCH
Confidence 3578999998887643221 121 111223456799999988653
No 226
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.01 E-value=29 Score=23.83 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 167 RLQEEIAQLRRKTE 180 (262)
Q Consensus 167 ~~e~e~~~l~~~~~ 180 (262)
+++-++..+...+.
T Consensus 74 ~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 74 RVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 227
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=65.70 E-value=0.54 Score=31.79 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=21.6
Q ss_pred cCcccc--ccccccc-----ce-ec-----cccccccHHHHHHHh
Q psy16189 205 TLTCPS--CKVKRKD-----AV-LT-----KCFHVFCWDCLRTRY 236 (262)
Q Consensus 205 ~~~C~i--C~~~~~~-----~v-~l-----~CgH~fC~~Ci~~~~ 236 (262)
...||. |...+.. .+ .. .|||.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 567887 8765421 12 23 699999999987743
No 228
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.68 E-value=1.7 Score=29.88 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=34.0
Q ss_pred cccCccccccccc--ccceec---cccccccHHHHHHH-hccCCCCccCCCcccCCCCc
Q psy16189 203 KETLTCPSCKVKR--KDAVLT---KCFHVFCWDCLRTR-YETRQRKCPKCNAAFGANDY 255 (262)
Q Consensus 203 ~~~~~C~iC~~~~--~~~v~l---~CgH~fC~~Ci~~~-~~~~~~~CP~Cr~~~~~~d~ 255 (262)
.....|.||...- ....++ .|.-.|-..|+... +..+...||.|.......++
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 4567899999754 222233 77767777787643 34467789999776655443
No 229
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=65.36 E-value=4.5 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=18.0
Q ss_pred ccHHHHHHHhccCC-------CCccCCCccc
Q psy16189 227 FCWDCLRTRYETRQ-------RKCPKCNAAF 250 (262)
Q Consensus 227 fC~~Ci~~~~~~~~-------~~CP~Cr~~~ 250 (262)
+|..|...+-.... .-||.|+-.+
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 49999988766432 3399998876
No 230
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=65.26 E-value=1.7 Score=34.14 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=28.6
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhc---cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE---TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 250 (262)
...|.+|...-.-...-.|...|...|+.+.+. .+...||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356999986422112236777777777755333 3457799998754
No 231
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=65.23 E-value=2 Score=25.76 Aligned_cols=10 Identities=30% Similarity=0.900 Sum_probs=7.8
Q ss_pred CCCccCCCcc
Q psy16189 240 QRKCPKCNAA 249 (262)
Q Consensus 240 ~~~CP~Cr~~ 249 (262)
...||.|+.+
T Consensus 30 dw~CP~Cg~~ 39 (46)
T 6rxn_A 30 DWCCPVCGVS 39 (46)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 3579999975
No 232
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.08 E-value=31 Score=23.78 Aligned_cols=7 Identities=0% Similarity=0.064 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy16189 104 NVEKELH 110 (262)
Q Consensus 104 ~lekel~ 110 (262)
-|+.|+.
T Consensus 44 vLk~Qv~ 50 (94)
T 3jsv_C 44 VLKAQAD 50 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 233
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=64.86 E-value=4.1 Score=25.70 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=22.7
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|+.|...+...++..-|..|-..| +.|..|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCc---------CEECCCCCCCCC
Confidence 46888888776555544444333333 347777777754
No 234
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=64.79 E-value=3.4 Score=20.54 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=10.7
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
+..|+.|+..|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1paa_A 2 AYACGLCNRAFTRR 15 (30)
T ss_dssp CSBCTTTCCBCSSS
T ss_pred CcCCcccCcccCCh
Confidence 35799999988654
No 235
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=64.45 E-value=1.2 Score=35.70 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=29.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhc---cCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE---TRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 250 (262)
...|.+|...-.-...-.|...|...|+.+.+. .+...||.|...-
T Consensus 7 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 466999986432112227777777788765332 3457799998743
No 236
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.39 E-value=1.4 Score=30.25 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=25.9
Q ss_pred ccCcccccccccc-cceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRK-DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~-~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..+.|++|...|. ....|. .|.- .... ..+...|+.|+..|...
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-~H~~--~h~~---~~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-KHME--VCQK---LQDALKCQHCRKQFKSK 67 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-HHHH--HHHH---HHHHHSCSSSCCCCSCH
T ss_pred CCcCCCCCCCChhhhHHHHH-HHHH--HHcC---CCCCEECCCCCCccCCH
Confidence 4578999999887 553332 2221 0001 01345799999998653
No 237
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=64.33 E-value=2.2 Score=27.06 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=13.4
Q ss_pred CCccCCCcccCCCCcccc
Q psy16189 241 RKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 241 ~~CP~Cr~~~~~~d~~~i 258 (262)
..||.||.+....++.++
T Consensus 19 ~~CP~CG~~T~~~hParf 36 (60)
T 2apo_B 19 EICPKCGEKTVIPKPPKF 36 (60)
T ss_dssp SBCSSSCSBCBCCCCCCC
T ss_pred ccCcCCCCcCCCCCCCCC
Confidence 459999998877666554
No 238
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=64.26 E-value=2.7 Score=26.07 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=24.2
Q ss_pred cCcccccccccccceeccccccccHHHHHH-H-hccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRT-R-YETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~-~-~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....+. .| ... . ...++..||.|+..|...
T Consensus 10 ~~~C~~C~k~f~~~~~l~-~H------~~~~H~~~~~~~~C~~C~k~f~~~ 53 (66)
T 2drp_A 10 TYRCKVCSRVYTHISNFC-RH------YVTSHKRNVKVYPCPFCFKEFTRK 53 (66)
T ss_dssp EEECTTTCCEESSHHHHH-HH------HHHHSSSSCCCEECTTTCCEESCH
T ss_pred ceECCCCcchhCCHHHHH-HH------HHHHcCCCCcCeECCCCCCccCCH
Confidence 467888888776542221 01 000 0 123456799999998653
No 239
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=64.18 E-value=2.5 Score=28.11 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=21.2
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.+.|++|...|.....+. .| +......++..||.|+..|..
T Consensus 3 ~~~C~~C~k~f~~~~~L~-~H------~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT-TH------IRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCHHHHH-HH------HHHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCHHHHH-HH------HHHcCCCCCccCCCCCCccCC
Confidence 367888887776542221 11 111122334567777776654
No 240
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.14 E-value=4.9 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=23.9
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|+.|...+...++..-|..|...| +.|..|+.+|..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCC
Confidence 56888888776665555554444444 457777777754
No 241
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=64.09 E-value=3.3 Score=30.46 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=5.4
Q ss_pred CCccCCCcccC
Q psy16189 241 RKCPKCNAAFG 251 (262)
Q Consensus 241 ~~CP~Cr~~~~ 251 (262)
..||.|+..|.
T Consensus 79 ~~C~~C~k~F~ 89 (133)
T 2lt7_A 79 YQCLACGKSFI 89 (133)
T ss_dssp EEESSSCCEES
T ss_pred ccCCCCCCCcC
Confidence 34555555443
No 242
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=63.98 E-value=4.7 Score=38.97 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=18.3
Q ss_pred ccHHHHHHHhccCC-------CCccCCCcccC
Q psy16189 227 FCWDCLRTRYETRQ-------RKCPKCNAAFG 251 (262)
Q Consensus 227 fC~~Ci~~~~~~~~-------~~CP~Cr~~~~ 251 (262)
+|..|-..+-.... .-||.|+..+.
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l~ 189 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSYR 189 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCEE
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceEE
Confidence 49999988765433 24999998763
No 243
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=63.57 E-value=28 Score=22.78 Aligned_cols=35 Identities=6% Similarity=0.091 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 57 NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
.++..++...+..|+..++.|+..++.++..-.++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544433333
No 244
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=63.44 E-value=4.5 Score=27.77 Aligned_cols=41 Identities=20% Similarity=0.481 Sum_probs=25.3
Q ss_pred ccCccccccccc-ccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 204 ETLTCPSCKVKR-KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 204 ~~~~C~iC~~~~-~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..+.|++|...| .....|. .| +... ..+...|+.|+..|..
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~-~H------~~~h-~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLK-KH------MENC-KQEMFTCHHCGKQLRS 74 (96)
T ss_dssp SCEECTTTCSCEESSHHHHH-HH------HHHH-CCCCCCCSSSCCCCSS
T ss_pred CCcCCCCCCCCcccCHHHHH-HH------HHHH-CCCCeECCCCCCeeCC
Confidence 347899888877 5542221 11 1112 3456789999999965
No 245
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=63.35 E-value=4.7 Score=26.92 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=10.5
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
...||.|+..|...
T Consensus 64 ~~~C~~C~~~f~~~ 77 (96)
T 2dmd_A 64 PFKCQICPYASRNS 77 (96)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCCCCccCCH
Confidence 45699999888643
No 246
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=62.88 E-value=0.8 Score=30.27 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=11.7
Q ss_pred CCccCCCcccCCCCcccccc
Q psy16189 241 RKCPKCNAAFGANDYHRLYL 260 (262)
Q Consensus 241 ~~CP~Cr~~~~~~d~~~iy~ 260 (262)
..|| ||..+....+ +||.
T Consensus 22 ~~C~-CG~~~~~~k~-rif~ 39 (71)
T 1gh9_A 22 RKCV-CGRTVNVKDR-RIFG 39 (71)
T ss_dssp EEET-TTEEEECCSS-SCBS
T ss_pred EECC-CCCeeeeceE-EEEE
Confidence 4599 9998876543 4443
No 247
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=62.88 E-value=3.2 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.939 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 456799999998753
No 248
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.82 E-value=86 Score=28.08 Aligned_cols=19 Identities=5% Similarity=0.079 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhhhHHHH
Q psy16189 30 EQNSRLLQQLREKDDANFK 48 (262)
Q Consensus 30 ~q~~~~~~~l~e~e~~~~k 48 (262)
.++......|.++...+..
T Consensus 58 kqerdv~~rI~kLkn~L~~ 76 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLAD 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 3333444444443333333
No 249
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.80 E-value=1 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.7
Q ss_pred cCcccccccccccc
Q psy16189 205 TLTCPSCKVKRKDA 218 (262)
Q Consensus 205 ~~~C~iC~~~~~~~ 218 (262)
.+.||+|+..+.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 37888888877765
No 250
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.76 E-value=6.4 Score=27.71 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=21.8
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
-.||||-...+...... +|..|... +....|-.|+...+.+
T Consensus 30 GkC~iCDs~Vrp~~~Vr----ICdeCs~G---~~~~rCIiCg~~~g~~ 70 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVR----VCENCSFG---KQAKNCIICNLNVGVN 70 (109)
T ss_dssp TCCTTTCCCCCCCEECE----EEHHHHTS---STTSBCTTTSSSBCCE
T ss_pred CcccccCCccCCcceEE----ECCcCCCC---CcCCceEEcCCCCCcc
Confidence 56999988554422211 56666533 2234577776444443
No 251
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=62.60 E-value=1.7 Score=23.88 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=14.0
Q ss_pred eccccccccHHHHHHHhc
Q psy16189 220 LTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 220 ~l~CgH~fC~~Ci~~~~~ 237 (262)
...|-|+.|..|--+.+-
T Consensus 9 mascehtmcgycqgplym 26 (40)
T 1erd_A 9 MASCEHTMCGYCQGPLYM 26 (40)
T ss_dssp HHHTCGGGGGGSCHHHHH
T ss_pred HHhccccccccccCCeeE
Confidence 458999999999777554
No 252
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=62.25 E-value=4.9 Score=28.67 Aligned_cols=39 Identities=21% Similarity=0.594 Sum_probs=25.0
Q ss_pred ccCcccccccccccceeccccccccHHHHHHHhc--cCCCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE--TRQRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~ 253 (262)
..+.|++|...|.....+ ..... .++..||.|+..|...
T Consensus 73 ~~~~C~~C~k~f~~~~~l-----------~~H~~~H~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSL-----------KQHIRYTEHTKVCPVCKKEFTST 113 (129)
T ss_dssp CSEECTTTCCEESSHHHH-----------HHHHHHTCCCCBCTTTCCBCSSH
T ss_pred CCeECCCCCcccCCHhHH-----------HHHHHHCCCCCCCCCCCcccCCH
Confidence 347898888877654222 11111 3567899999999754
No 253
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.22 E-value=41 Score=24.13 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHH
Q psy16189 26 EDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 64 (262)
Q Consensus 26 e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~ 64 (262)
++-+....-|-.+|+.-.+-+....++-.-.++..-.++
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~ 59 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 59 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666677666666666666666666655554
No 254
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.19 E-value=5.1 Score=26.44 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=23.4
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..|+.|...+...++..-|..|...| +.|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC---------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT---------SSCSSSCCCCCSS
T ss_pred CcCccccCEeccceEEECCceeCccC---------CccccCCCCCCCC
Confidence 36888888776555544444443333 3467777776543
No 255
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=61.79 E-value=2.3 Score=20.82 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=10.4
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
+..|+.|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 3 PFSCSLCPQRSRDF 16 (27)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 45699999888653
No 256
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=61.43 E-value=4.6 Score=19.84 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=10.5
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
...|+.|+..|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1klr_A 2 TYQCQYCEFRSADS 15 (30)
T ss_dssp CCCCSSSSCCCSCS
T ss_pred CccCCCCCCccCCH
Confidence 35699999988654
No 257
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.40 E-value=2.5 Score=29.61 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=25.7
Q ss_pred cCcccccccccccceec---cccccccHHHHHHHhc--cCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYE--TRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~ 248 (262)
.+.| ||........++ .|..-|-..|+..... ...+.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4778 898876554444 5555555555544222 23467999974
No 258
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=61.28 E-value=38 Score=24.71 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHLRNQAMDLNKRKAIESA 127 (262)
Q Consensus 98 l~~~i~~lekel~~~~~~~~~~k~k~~e~~ 127 (262)
+.-++.+++..+..-++.....++++..+.
T Consensus 60 L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ 89 (130)
T 3cl3_D 60 LRMQGQSVEAALRMERQAASEEKRKLAQLQ 89 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666655444444455554444
No 259
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.15 E-value=3 Score=25.05 Aligned_cols=15 Identities=40% Similarity=1.043 Sum_probs=11.7
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
..+.||.|+..|...
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 456799999998743
No 260
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.14 E-value=1.3 Score=28.43 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=29.2
Q ss_pred ccCcccccccccc---cceec--cccccccHHHHHHHh------ccCCCCccCCCccc
Q psy16189 204 ETLTCPSCKVKRK---DAVLT--KCFHVFCWDCLRTRY------ETRQRKCPKCNAAF 250 (262)
Q Consensus 204 ~~~~C~iC~~~~~---~~v~l--~CgH~fC~~Ci~~~~------~~~~~~CP~Cr~~~ 250 (262)
....|.+|..... +.+++ .|...|-..|+.+.+ ..+...||.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3478999998642 23333 776556566665422 34677899996644
No 261
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=60.73 E-value=3 Score=26.22 Aligned_cols=36 Identities=28% Similarity=0.703 Sum_probs=22.2
Q ss_pred ccCcccccccc-cccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 204 ETLTCPSCKVK-RKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 204 ~~~~C~iC~~~-~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
....|+||... |.+ .||| .|..| ..+.|.-|+..++
T Consensus 8 d~~~C~iC~KTKFAD----G~Gh-~C~yC-------k~r~CaRCGg~v~ 44 (62)
T 2a20_A 8 DAPTCGICHKTKFAD----GCGH-NCSYC-------QTKFCARCGGRVS 44 (62)
T ss_dssp CCCCCSSSSCSCCCS----SCCE-EBTTT-------CCEECTTSEEEEE
T ss_pred Ccchhhhhccceecc----CCCc-ccccc-------CCeeecccCCEee
Confidence 34789999974 333 5777 46666 3345666665554
No 262
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=60.60 E-value=2 Score=28.45 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=11.9
Q ss_pred cCCCCccCCCcccCCC
Q psy16189 238 TRQRKCPKCNAAFGAN 253 (262)
Q Consensus 238 ~~~~~CP~Cr~~~~~~ 253 (262)
.++..||.|+..|...
T Consensus 60 ~~~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 60 EKPFACDICGRKFARS 75 (90)
T ss_dssp CCCEECTTTCCEESSH
T ss_pred CCCccCCCCCchhCCH
Confidence 3456799999988653
No 263
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=60.53 E-value=2.4 Score=20.91 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=9.6
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
+..|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3568999888864
No 264
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.32 E-value=6.1 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=18.4
Q ss_pred Ccccccccccc--cceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~--~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|+.|...+. ..++..-|..|-..| +.|..|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEEECccccCccc---------CeECCCCCcCCC
Confidence 45666766665 334443343333333 235555555543
No 265
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=60.21 E-value=27 Score=21.42 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQ 174 (262)
Q Consensus 136 ~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~ 174 (262)
.+=.+++++.+++.....+...++.+....++++.-+-+
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777778777777788888877777777665544
No 266
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=59.97 E-value=6.5 Score=30.98 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=28.6
Q ss_pred Ccccccccccc-----cceeccc----cccccHHHHHHH-------------hccCC-----CCccCCCcccCC
Q psy16189 206 LTCPSCKVKRK-----DAVLTKC----FHVFCWDCLRTR-------------YETRQ-----RKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~-----~~v~l~C----gH~fC~~Ci~~~-------------~~~~~-----~~CP~Cr~~~~~ 252 (262)
-.|+.|...-. ....-+= .++.|.+|.... +.... ..||.|+.++..
T Consensus 76 K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 76 KICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp EECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEEB
T ss_pred eECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCCc
Confidence 45999987321 1122223 478899996521 22223 469999998874
No 267
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.95 E-value=36 Score=22.73 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy16189 98 LQTVLTNVEK 107 (262)
Q Consensus 98 l~~~i~~lek 107 (262)
+..+|..++.
T Consensus 25 Le~~v~~le~ 34 (79)
T 3cvf_A 25 LEHQLRAMER 34 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 268
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=59.94 E-value=2.8 Score=20.73 Aligned_cols=13 Identities=31% Similarity=0.771 Sum_probs=9.9
Q ss_pred CCccCCCcccCCC
Q psy16189 241 RKCPKCNAAFGAN 253 (262)
Q Consensus 241 ~~CP~Cr~~~~~~ 253 (262)
..||.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 4699999888654
No 269
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.55 E-value=0.96 Score=31.45 Aligned_cols=46 Identities=26% Similarity=0.521 Sum_probs=25.6
Q ss_pred ccCcccccccccccceec---cccccccHHHHHHH---hccCCCCccCCCcc
Q psy16189 204 ETLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTR---YETRQRKCPKCNAA 249 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~---~~~~~~~CP~Cr~~ 249 (262)
....|.||...-....++ .|...|-..|+.+- +..+...||.|...
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 346799998764322222 56544444555432 23345668888653
No 270
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=59.48 E-value=3.8 Score=28.62 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.8
Q ss_pred cCccccccccccc-ceecc--ccccccHH
Q psy16189 205 TLTCPSCKVKRKD-AVLTK--CFHVFCWD 230 (262)
Q Consensus 205 ~~~C~iC~~~~~~-~v~l~--CgH~fC~~ 230 (262)
...|..|...-.+ .+.|. |||++|..
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4679999954444 68888 99999954
No 271
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.42 E-value=42 Score=23.44 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHL 111 (262)
Q Consensus 98 l~~~i~~lekel~~ 111 (262)
+...+..+.+.+..
T Consensus 29 l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 29 LKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 272
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=63.81 E-value=1.9 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.683 Sum_probs=8.0
Q ss_pred CCccCCCcccCC
Q psy16189 241 RKCPKCNAAFGA 252 (262)
Q Consensus 241 ~~CP~Cr~~~~~ 252 (262)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 457777777754
No 273
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=59.35 E-value=4.9 Score=22.63 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=19.4
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
.+.|++|...|.....+. .| .......+...||.|+
T Consensus 10 ~~~C~~C~k~f~~~~~l~-~H------~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRMS-YH------VRSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECSCHHHHH-HH------HHHHSCCCCCCCCCCC
T ss_pred CCcCCCCCcccCCHHHHH-HH------HHHccCCCCCCCcCCC
Confidence 467888777765432221 11 1122234567799995
No 274
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.21 E-value=9 Score=24.40 Aligned_cols=32 Identities=13% Similarity=0.474 Sum_probs=24.7
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~ 237 (262)
+.|..|...+... ....=|..||..|....+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHHcc
Confidence 6788998887653 4456788999999987665
No 275
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.99 E-value=2.5 Score=26.81 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=27.4
Q ss_pred cCcccccccccccceeccccccccHHHHHHHh---ccCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY---ETRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~ 250 (262)
...|.+|...-.-...-.|...|-..|+.+-+ ..+...||.|....
T Consensus 9 ~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 46799998632111122676666667776432 23456799997643
No 276
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=58.73 E-value=36 Score=22.37 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~l~~~ 178 (262)
...+...+..++.++.+++..+.....+......-+-.++.|+..+++=
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444444444445555666666665543
No 277
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=58.68 E-value=2.7 Score=20.68 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=10.0
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
+..|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4569999988865
No 278
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=58.11 E-value=1.7 Score=28.09 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=29.5
Q ss_pred ccCcccccccccccceeccccccccHHHHHHHh---ccCCCCccCCCcccCCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY---ETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~~~~d 254 (262)
....|.+|...-.-...-.|...|-..|+.+-+ ..+...||.|...-...+
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~ 60 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV 60 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCC
T ss_pred CCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccC
Confidence 346799998742111122676666666766422 335567999976544433
No 279
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.06 E-value=5.6 Score=25.28 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=7.9
Q ss_pred Cccccccccccccee
Q psy16189 206 LTCPSCKVKRKDAVL 220 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~ 220 (262)
..|+.|...+....+
T Consensus 6 ~~C~~C~~~I~~~~~ 20 (69)
T 2cur_A 6 SGCVKCNKAITSGGI 20 (69)
T ss_dssp CCCSSSCCCCCTTCE
T ss_pred CCCcccCCEeCcceE
Confidence 346666665544333
No 280
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.06 E-value=8 Score=24.54 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=7.3
Q ss_pred ccccccccccccee
Q psy16189 207 TCPSCKVKRKDAVL 220 (262)
Q Consensus 207 ~C~iC~~~~~~~v~ 220 (262)
.|+.|...+....+
T Consensus 7 ~C~~C~~~I~~~~~ 20 (70)
T 2d8z_A 7 GCVQCKKPITTGGV 20 (70)
T ss_dssp BCSSSCCBCCSSEE
T ss_pred CCcccCCeeccceE
Confidence 46666665544433
No 281
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.05 E-value=7.3 Score=25.22 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=19.3
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|+.|...+...++..-|..|-..| +.|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 45777777766554444443332333 33555555554
No 282
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.93 E-value=2.4 Score=26.77 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=24.3
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....|. .|. ......+...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 9 PEKCSECSYSCSSKAALR-IHE------RIHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp SEECSSSSCEESSHHHHH-HHH------GGGCCSCSEECSSSSCEESSH
T ss_pred CeECCCCCcccCCHHHHH-HHH------HHcCCCCCEeCCCCCCccCCH
Confidence 477888888776543221 111 001122456799999988653
No 283
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=57.70 E-value=4.3 Score=28.47 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=9.6
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
...||.|+..|..
T Consensus 66 ~~~C~~C~~~f~~ 78 (124)
T 2dlq_A 66 VFTCSVCQETFRR 78 (124)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 3569999888864
No 284
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.53 E-value=1.1e+02 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.204 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16189 57 NQLHKLAREEKDILHEQVNALK 78 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l~ 78 (262)
+.....+..+.+.+.++...+.
T Consensus 76 d~~~r~~~~~~~~l~~~rn~~s 97 (501)
T 1wle_A 76 WQELRQLREQIRSLEEEKEAVT 97 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444434444444333333
No 285
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=57.36 E-value=5.4 Score=20.77 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.5
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
+..|+.|+..|...
T Consensus 2 p~~C~~C~k~F~~~ 15 (33)
T 1rim_A 2 KFACPECPKRFMRS 15 (33)
T ss_dssp CCCCSSSCCCCSSH
T ss_pred cccCCCCCchhCCH
Confidence 45799999988653
No 286
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.35 E-value=3.4 Score=26.54 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=24.7
Q ss_pred ccCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..+.|++|...|.....+. .|. ......++..||.|+..|...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 59 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLS-KHR------RTHTGEKPYKCDECGKAFIQR 59 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHH-HHH------TTTCCSCSEECSSSCCEESSH
T ss_pred CCEECCCCCcccCCHHHHH-HHH------HHcCCCcCeeCCCCCCccCCH
Confidence 3578999988876542221 110 000112456799999988654
No 287
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=57.32 E-value=2.2 Score=21.08 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.4
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
+..||.|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 3 PYRCPLCRAGCPSL 16 (27)
T ss_dssp TEEETTTTEEESCH
T ss_pred CcCCCCCCcccCCH
Confidence 45699999888653
No 288
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=57.29 E-value=4.6 Score=19.42 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=9.8
Q ss_pred CCccCCCcccCCC
Q psy16189 241 RKCPKCNAAFGAN 253 (262)
Q Consensus 241 ~~CP~Cr~~~~~~ 253 (262)
..|+.|+..|...
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 4699999888653
No 289
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=57.25 E-value=8.8 Score=25.00 Aligned_cols=15 Identities=40% Similarity=0.899 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 64 ~~~~C~~C~~~f~~~ 78 (89)
T 2wbs_A 64 RPFQCQKCDRAFSRS 78 (89)
T ss_dssp CCEECSSSSCEESSH
T ss_pred CCccCCCCCcccCCH
Confidence 456799999988653
No 290
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.46 E-value=45 Score=29.41 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQ 174 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~e~e~~~ 174 (262)
+..++.+...++..+..++..+.++...+..+....+++-.++..
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444433
No 291
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=61.10 E-value=2.4 Score=21.13 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=7.9
Q ss_pred CCccCCCcccCC
Q psy16189 241 RKCPKCNAAFGA 252 (262)
Q Consensus 241 ~~CP~Cr~~~~~ 252 (262)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 457777777754
No 292
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.18 E-value=4.9 Score=25.74 Aligned_cols=43 Identities=19% Similarity=0.536 Sum_probs=23.4
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhc-cCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE-TRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....+. .|.. ..... .....||.|+..|...
T Consensus 15 ~~~C~~C~k~f~~~~~L~-~H~~-----~~h~~~~~~~~C~~C~~~f~~~ 58 (77)
T 2ct1_A 15 PYECYICHARFTQSGTMK-MHIL-----QKHTENVAKFHCPHCDTVIARK 58 (77)
T ss_dssp SEECTTTCCEESCHHHHH-HHHH-----HHSSSSCSSEECSSSSCEESSH
T ss_pred CeECCCcCchhCCHHHHH-HHHH-----HhcCCCCCccCCCCCCCccCCH
Confidence 467888888776542221 1100 00011 1356799999988653
No 293
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=55.68 E-value=3.7 Score=26.71 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=8.1
Q ss_pred CCccCCCcccC
Q psy16189 241 RKCPKCNAAFG 251 (262)
Q Consensus 241 ~~CP~Cr~~~~ 251 (262)
..||+|+.+|.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 35888888874
No 294
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.24 E-value=4.3 Score=26.08 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=25.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHh---ccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY---ETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|++|...|.....|. .|. .... ..+...|+.|+..|...
T Consensus 7 ~~~C~~C~k~f~~~~~L~-~H~------~~h~~~~~~~~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 7 GLQCEICGFTCRQKASLN-WHQ------RKHAETVAALRFPCEFCGKRFEKP 51 (78)
T ss_dssp CEECSSSCCEESSHHHHH-HHH------HHHHHHTTTCCEECTTTCCEESSH
T ss_pred CeECCCCCCeeCCHHHHH-HHH------HHhhccCCCcccCCCCCCchhCCH
Confidence 477999888876543321 121 1111 13467799999988653
No 295
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.21 E-value=7.5 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=21.1
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|+.|...+...++..-|..|-..| +.|..|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCT
T ss_pred CCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCC
Confidence 45777877766554444343332333 346667666654
No 296
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.11 E-value=5.4 Score=20.91 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=11.3
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 456799999988653
No 297
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.57 E-value=8.5 Score=24.94 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=20.0
Q ss_pred Ccccccccccc-cceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 206 LTCPSCKVKRK-DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 206 ~~C~iC~~~~~-~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
..|+.|...+. ...+..-|..|-..| +.|..|+.++..
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCC---------CCCCCCCCccCC
Confidence 46788887765 333333333332333 346666666653
No 298
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.57 E-value=42 Score=21.93 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy16189 173 AQLRRK 178 (262)
Q Consensus 173 ~~l~~~ 178 (262)
..|+.+
T Consensus 57 ~~Lqse 62 (72)
T 3nmd_A 57 QMLQNE 62 (72)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 299
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.49 E-value=7.7 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.371 Sum_probs=20.4
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|+.|...+...++..-|..|...| +.|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC---------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS---------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc---------CCccCCCCccC
Confidence 35777777666554444343333333 34677777764
No 300
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.46 E-value=12 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=6.5
Q ss_pred Ccccccccccc
Q psy16189 206 LTCPSCKVKRK 216 (262)
Q Consensus 206 ~~C~iC~~~~~ 216 (262)
..|+.|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x4k_A 6 SGCQECKKTIM 16 (72)
T ss_dssp CCBSSSCCCCC
T ss_pred CCCccCCCccc
Confidence 34666666555
No 301
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=54.43 E-value=53 Score=23.02 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 59 LHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 59 ~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
+|..+|-....|..+-.+|.=+++-+++.+..+++
T Consensus 10 KyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE 44 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEE 44 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 45556656777777777777777765555444333
No 302
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=54.00 E-value=15 Score=24.40 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=11.7
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
+...||.|+..|...
T Consensus 74 ~~~~C~~C~~~f~~~ 88 (100)
T 2ebt_A 74 KPFQCGVCNRSFSRS 88 (100)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred CCeECCCCcCccCCH
Confidence 457799999988653
No 303
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.71 E-value=7.7 Score=25.53 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=18.4
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|+.|...+...++..-|..|-..| ++|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGC---------FTCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT---------CBCSSSCCBCT
T ss_pred CccccCCCeecceeEEECCccccHHh---------cCcccCCCccC
Confidence 45666666655444433333332222 34666666664
No 304
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.66 E-value=29 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 63 AREEKDILHEQVNALKLQIDAMHTAIR 89 (262)
Q Consensus 63 ~~~~k~~l~~e~~~l~~~~~~~~~~i~ 89 (262)
+..+..+++.++..|+..+-.-++.|.
T Consensus 8 lenevaslenenetlkkknlhkkdlia 34 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIA 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHH
Confidence 344555666666666554444344443
No 305
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.60 E-value=9.9 Score=24.63 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=8.1
Q ss_pred Cccccccccccc
Q psy16189 206 LTCPSCKVKRKD 217 (262)
Q Consensus 206 ~~C~iC~~~~~~ 217 (262)
..|+.|...+..
T Consensus 6 ~~C~~C~~~I~~ 17 (76)
T 1x68_A 6 SGCVACSKPISG 17 (76)
T ss_dssp CCCTTTCCCCCT
T ss_pred CCCccCCCcccC
Confidence 457777777664
No 306
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.45 E-value=47 Score=22.09 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 61 KLAREEKDILHEQVNALKLQIDAMHTAIR 89 (262)
Q Consensus 61 ~~~~~~k~~l~~e~~~l~~~~~~~~~~i~ 89 (262)
..+.+....-.+|+.+|+..-+.+..--.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~ 42 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQ 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Confidence 34444555556666666665554443333
No 307
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.32 E-value=2.2 Score=29.32 Aligned_cols=47 Identities=17% Similarity=0.552 Sum_probs=30.4
Q ss_pred cCcccccccccc---cceec--cccccccHHHHHHH-------hccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRK---DAVLT--KCFHVFCWDCLRTR-------YETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~---~~v~l--~CgH~fC~~Ci~~~-------~~~~~~~CP~Cr~~~~ 251 (262)
...|.+|...-. +.+++ .|...|-..|+.+. ...+.+.||.|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 578999998643 34444 66655556666543 2346678999976554
No 308
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.23 E-value=94 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=15.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 51 TERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 51 ~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
.+.+..+..+..+..+.+.|..+...+..++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544444443
No 309
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=53.05 E-value=4.9 Score=29.72 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=20.1
Q ss_pred CcccccccccccceeccccccccHH
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWD 230 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~ 230 (262)
..|..|...-...+.|.|||+.|..
T Consensus 35 ~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 35 WKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CcCccccCcCceEEeccCCccccCc
Confidence 4699999876666889999998844
No 310
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=52.98 E-value=3 Score=21.63 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=7.1
Q ss_pred CCccCCCcccC
Q psy16189 241 RKCPKCNAAFG 251 (262)
Q Consensus 241 ~~CP~Cr~~~~ 251 (262)
..|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 45777777664
No 311
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.82 E-value=9.6 Score=25.61 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=23.5
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...|..|...+...++..-|..|-..| +.|-.|+.+|..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCC
Confidence 356888888776655544444443333 346777777754
No 312
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.75 E-value=9.5 Score=24.35 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=8.2
Q ss_pred Cccccccccccc
Q psy16189 206 LTCPSCKVKRKD 217 (262)
Q Consensus 206 ~~C~iC~~~~~~ 217 (262)
..|+.|...+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 457777777664
No 313
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.60 E-value=8 Score=25.46 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=25.0
Q ss_pred CcccccccccccceeccccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~ 237 (262)
+.|..|...+....+..=|..||..|....+.
T Consensus 42 F~C~~C~~~L~~~~f~~~g~~yC~~cy~~~f~ 73 (79)
T 2cor_A 42 FNCANCGKELTADARELKGELYCLPCHDKMGV 73 (79)
T ss_dssp SBCSSSCCBCCTTCEEETTEEECHHHHHTTSC
T ss_pred CEeCCCCCccCCCCEeECCEEeCHHHHHHhCC
Confidence 77999998887655567789999999876544
No 314
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.56 E-value=13 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.409 Sum_probs=25.1
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~ 237 (262)
+.|..|...+... ....=|..||..|....+.
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 7789999887653 3446789999999988765
No 315
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.26 E-value=8.6 Score=24.23 Aligned_cols=34 Identities=32% Similarity=0.824 Sum_probs=21.4
Q ss_pred ccCcccccccccccc-----ee-cc--ccccccHHHHHHHhc
Q psy16189 204 ETLTCPSCKVKRKDA-----VL-TK--CFHVFCWDCLRTRYE 237 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~-----v~-l~--CgH~fC~~Ci~~~~~ 237 (262)
....||-|...+... ++ .. |||.||..|...|..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 346799999876432 11 12 777777777766543
No 316
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=52.20 E-value=67 Score=23.52 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 49 LMTERIKSNQLH---KLAREEKDILHEQVNALKLQIDAMHTAI 88 (262)
Q Consensus 49 l~~e~~ka~q~~---~~~~~~k~~l~~e~~~l~~~~~~~~~~i 88 (262)
|..|.-|.+|.+ .+..++...|.+++..+++..++....+
T Consensus 41 L~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 41 LREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444432 2344456667777777777666654444
No 317
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=52.13 E-value=45 Score=21.57 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16189 73 QVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 73 e~~~l~~~~~~~~~~i~~l~e 93 (262)
.+..|+..+..-...|.+|++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333
No 318
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.10 E-value=4.4 Score=21.57 Aligned_cols=15 Identities=47% Similarity=0.868 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 456799999988754
No 319
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=51.95 E-value=7.3 Score=34.26 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=23.1
Q ss_pred cCccccccccccc-----ceeccccccccHHHHHH
Q psy16189 205 TLTCPSCKVKRKD-----AVLTKCFHVFCWDCLRT 234 (262)
Q Consensus 205 ~~~C~iC~~~~~~-----~v~l~CgH~fC~~Ci~~ 234 (262)
...|..|...+.. ..+-.||..+|..|...
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 3569999987742 25668999999999774
No 320
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.89 E-value=5.2 Score=26.20 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=29.6
Q ss_pred ccCccccccccc---ccceec--cccccccHHHHHHH-hccCCCCccCCCcc
Q psy16189 204 ETLTCPSCKVKR---KDAVLT--KCFHVFCWDCLRTR-YETRQRKCPKCNAA 249 (262)
Q Consensus 204 ~~~~C~iC~~~~---~~~v~l--~CgH~fC~~Ci~~~-~~~~~~~CP~Cr~~ 249 (262)
....|.||...- .+..++ .|.-.|-..|+... +..+...||.|...
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 357799998753 223333 77767777777642 34456789999653
No 321
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.86 E-value=4.6 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.471 Sum_probs=27.5
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhc---cCCCCccCCCcc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE---TRQRKCPKCNAA 249 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 249 (262)
...|.+|...-.-...-.|...|-..|+.+-+. .+...||.|...
T Consensus 25 ~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 467999997532111226766666667655433 345679999754
No 322
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=51.60 E-value=61 Score=22.87 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=14.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 52 ERIKSNQLHKLAREEKDILHEQVNALK 78 (262)
Q Consensus 52 e~~ka~q~~~~~~~~k~~l~~e~~~l~ 78 (262)
+...+.|....+.+.+..|..++..++
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666665555554
No 323
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=51.56 E-value=7.7 Score=31.83 Aligned_cols=37 Identities=14% Similarity=0.354 Sum_probs=21.6
Q ss_pred ccceeccccccccHHHHHHHhcc-CCCCccCCCcccCC
Q psy16189 216 KDAVLTKCFHVFCWDCLRTRYET-RQRKCPKCNAAFGA 252 (262)
Q Consensus 216 ~~~v~l~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 252 (262)
....++.||+.|-..=+...+.. ..+.||.|+..+..
T Consensus 120 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 120 EEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRP 157 (246)
T ss_dssp EEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEE
T ss_pred ceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCccCc
Confidence 33445678777654433332332 35689999986643
No 324
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=51.33 E-value=5.8 Score=27.69 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=10.7
Q ss_pred cccHHHHHHHhc
Q psy16189 226 VFCWDCLRTRYE 237 (262)
Q Consensus 226 ~fC~~Ci~~~~~ 237 (262)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 325
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=51.23 E-value=6 Score=25.38 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=27.9
Q ss_pred cCccccccccccc-ceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~-~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...|..|...+.- +..=.||.+||..- ++. ....||+--...+.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H---R~~-e~H~C~fDyk~~gr 59 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSH---RYP-EKHECSFDFKEVGS 59 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSS---CSS-TTTTCCCCCSCSCC
T ss_pred CCcChhhCCcccccCeEeecCCEecccC---CCc-cccCCCcchhHHhH
Confidence 4689999986543 22238999999843 333 34558876555443
No 326
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=51.08 E-value=5.9 Score=27.71 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=11.0
Q ss_pred cccHHHHHHHhcc
Q psy16189 226 VFCWDCLRTRYET 238 (262)
Q Consensus 226 ~fC~~Ci~~~~~~ 238 (262)
.||..|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 327
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=51.07 E-value=2.8 Score=26.37 Aligned_cols=46 Identities=22% Similarity=0.556 Sum_probs=27.6
Q ss_pred cCcccccccccccceeccccccccHHHHHHHh---ccCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY---ETRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~ 250 (262)
...|.+|...-.-...-.|...|-..|+.+-+ ..+...||.|....
T Consensus 5 ~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46799998742111122777777777877433 23456799986543
No 328
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=51.00 E-value=51 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 120 KRKAIESAQSAADLKLHLEKYHAQLKEAQQ 149 (262)
Q Consensus 120 k~k~~e~~~~~~~l~~~l~~l~~~~~~~~~ 149 (262)
++.+...-+.-.-+..+++.+.+++..+..
T Consensus 44 K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~ 73 (79)
T 4abm_A 44 KRAALQALKRKKRYEKQLAQIDGTLSTIEF 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333444445555555544443
No 329
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.94 E-value=8.1 Score=24.59 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=10.7
Q ss_pred cCCCCccCCCcccC
Q psy16189 238 TRQRKCPKCNAAFG 251 (262)
Q Consensus 238 ~~~~~CP~Cr~~~~ 251 (262)
.++..|+.|+..|+
T Consensus 66 ~~~~~C~~C~k~F~ 79 (79)
T 2dlk_A 66 TRDYICEFSGPSSG 79 (79)
T ss_dssp SCCCSCCSSSCCCC
T ss_pred CCCeeCCCCCCCCC
Confidence 35678999998874
No 330
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=50.75 E-value=8.7 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=22.0
Q ss_pred cccccccccc--cceecccccccc--HHHHHHHhccCCCCccCCCcccCC
Q psy16189 207 TCPSCKVKRK--DAVLTKCFHVFC--WDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 207 ~C~iC~~~~~--~~v~l~CgH~fC--~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.|+.|...+. +.++..-|..|- ..| +.|-.|+.++..
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C---------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC---------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT---------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC---------EECCCCCCcCCC
Confidence 5888888776 445554454443 333 346677777653
No 331
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.53 E-value=6.7 Score=25.90 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=26.0
Q ss_pred cCccccccccccc-ceeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~-~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
...|..|...+.- +..=.||.+||..- ++. ....||+-=...
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~H---Ry~-e~H~C~fDyk~~ 67 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLH---RYS-DKHNCPYDYKAE 67 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSS---CST-TTTTCCCCGGGT
T ss_pred CCcChhhCCcccccCeecCCCCEechhc---CCC-ccCCCcchhhhh
Confidence 3679999986433 33336999999843 232 345587764433
No 332
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=50.51 E-value=4.3 Score=19.98 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=9.8
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
+..|+.|+..|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4568999888864
No 333
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=50.43 E-value=3.9 Score=27.50 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=11.8
Q ss_pred CCCCccCCCcccCCCC
Q psy16189 239 RQRKCPKCNAAFGAND 254 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~d 254 (262)
-.++||.|+..|-.+.
T Consensus 50 F~FkCP~CgEEFyG~~ 65 (95)
T 2k5c_A 50 FVFKCPVCGEEFYGKT 65 (95)
T ss_dssp SEEECTTTCCEEETTS
T ss_pred HhhcCCCccHHHhccc
Confidence 4567999999885443
No 334
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.23 E-value=73 Score=28.21 Aligned_cols=30 Identities=3% Similarity=0.058 Sum_probs=14.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 52 ERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 52 e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
+....+.....+..+.+.+.++...+..++
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555444443
No 335
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.07 E-value=19 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=16.5
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~ 237 (262)
+.|..|...+... ....=|..||..|....+.
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 4455555554432 2334456666666665544
No 336
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.07 E-value=4.5 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=11.1
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elt_A 8 KPYKCPQCSYASAIK 22 (36)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCCCCCCCCcccCCH
Confidence 456799999988653
No 337
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.95 E-value=80 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16189 96 RYLQTVLTNVEKELHLRN 113 (262)
Q Consensus 96 ~~l~~~i~~lekel~~~~ 113 (262)
..+...+..|+.|+...+
T Consensus 82 ~~L~eYn~rL~~E~~dR~ 99 (152)
T 4fla_A 82 LLLAEYNGRLAAELEDRR 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555544443
No 338
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.90 E-value=4.4 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=10.7
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..||.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2els_A 8 KIFTCEYCNKVFKF 21 (36)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEECCCCCceeCC
Confidence 34579999998864
No 339
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.85 E-value=3 Score=26.54 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=26.9
Q ss_pred ccCccccccccccc-ceec---cccccccHHHHHHHhc----cCCCCccCCCccc
Q psy16189 204 ETLTCPSCKVKRKD-AVLT---KCFHVFCWDCLRTRYE----TRQRKCPKCNAAF 250 (262)
Q Consensus 204 ~~~~C~iC~~~~~~-~v~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 250 (262)
....|++|...+.+ ...+ .|..-|-..|+.-... .....||.|+..-
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 35789999988743 2233 4543444455533211 2457799997643
No 340
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=49.84 E-value=6 Score=26.09 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=16.3
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhccCCCCccCCC
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
+.|..|...+... ....=|..||..|....+. ++|-.|+
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~---~~c~gcg 74 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG---PKGYGYG 74 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC---CcccccC
Confidence 3455555554332 2334455666666655443 3455554
No 341
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.62 E-value=4.6 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
+...|+.|+..|...
T Consensus 6 k~~~C~~C~k~f~~~ 20 (35)
T 2elx_A 6 SGYVCALCLKKFVSS 20 (35)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCCCcchhCCH
Confidence 456799999988653
No 342
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.20 E-value=16 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred Cccccccccccc---ceeccccccccHHHHHHHhccC
Q psy16189 206 LTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETR 239 (262)
Q Consensus 206 ~~C~iC~~~~~~---~v~l~CgH~fC~~Ci~~~~~~~ 239 (262)
+.|..|...+.+ +....=|..||..|....+..+
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 678899988863 4556778999999998887743
No 343
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.17 E-value=9 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=26.6
Q ss_pred cCcccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCccc
Q psy16189 205 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 250 (262)
...|..|...+.-+ ..=.||.+||..- ++. ....||+-=...
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H---Ry~-e~H~C~fDyk~~ 57 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSH---RYP-EVHGCTFDFKSA 57 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTT---CST-TTTTCCCCCSCC
T ss_pred CCcChhhCCccCccCEEeecCCEecccc---CCc-ccCCCCchhhHH
Confidence 47899999865432 3337999999844 333 345587654433
No 344
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.07 E-value=1.4e+02 Score=26.96 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16189 57 NQLHKLAREEKDILHEQVNAL 77 (262)
Q Consensus 57 ~q~~~~~~~~k~~l~~e~~~l 77 (262)
+.....+..+.+.|.++...+
T Consensus 39 d~~~r~~~~~~~~l~~~rn~~ 59 (485)
T 3qne_A 39 YKEWVKLRFDLDEHNKKLNSV 59 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 345
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.02 E-value=11 Score=24.49 Aligned_cols=37 Identities=22% Similarity=0.498 Sum_probs=17.9
Q ss_pred cccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 207 TCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
.|+.|...+...++..-|..|-..| +.|..|+.++..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPEC---------FVCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTT---------CBCSSSCCBSCS
T ss_pred ccccCCCeecceeEEECCCeEecCc---------CChhhCCCCCCC
Confidence 4666666555443332232222222 346667666654
No 346
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.88 E-value=18 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=25.0
Q ss_pred Ccccccccccccc-eeccccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~ 237 (262)
+.|..|...+... ....=|..||..|....+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHHcC
Confidence 6789999888653 4456788999999988765
No 347
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.85 E-value=65 Score=22.42 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 100 TVLTNVEKELHLRN 113 (262)
Q Consensus 100 ~~i~~lekel~~~~ 113 (262)
..+..++.++..+.
T Consensus 24 ~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 24 QRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 348
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.62 E-value=5.1 Score=21.22 Aligned_cols=15 Identities=33% Similarity=0.961 Sum_probs=11.3
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
+...|+.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elo_A 8 RSYSCPVCEKSFSED 22 (37)
T ss_dssp CCCEETTTTEECSSH
T ss_pred CCcCCCCCCCccCCH
Confidence 456799999988653
No 349
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.34 E-value=13 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=20.1
Q ss_pred Ccccccccccc--cceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~--~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..|+.|...+. +.++..-|..|-..| +.|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECcccccccc---------CchhhCCCccCCC
Confidence 35777777665 333433333333333 3466676666543
No 350
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=48.33 E-value=3.5 Score=25.71 Aligned_cols=41 Identities=24% Similarity=0.540 Sum_probs=25.5
Q ss_pred ccccCcccccccccccceeccccccccHHHHHHHhccCCCCcc--CCCcccCCCCccccccC
Q psy16189 202 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCP--KCNAAFGANDYHRLYLE 261 (262)
Q Consensus 202 ~~~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~d~~~iy~~ 261 (262)
+-..+.||+|.....-. . +...|| .|+..|...|=.++.+.
T Consensus 7 lL~iL~CP~c~~~L~~~---~----------------~~L~C~~~~c~~~YPI~dGIPvlL~ 49 (56)
T 2kpi_A 7 LLEILACPACHAPLEER---D----------------AELICTGQDCGLAYPVRDGIPVLLV 49 (56)
T ss_dssp CTTSCCCSSSCSCEEEE---T----------------TEEEECSSSCCCEEEEETTEECCCT
T ss_pred HHhheeCCCCCCcceec---C----------------CEEEcCCcCCCcEEeeECCEeeeCH
Confidence 44568899999854311 0 223477 78888876666666543
No 351
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.27 E-value=12 Score=25.18 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=25.3
Q ss_pred Cccccccccccc-ceeccccccccHHHHHHHhcc
Q psy16189 206 LTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYET 238 (262)
Q Consensus 206 ~~C~iC~~~~~~-~v~l~CgH~fC~~Ci~~~~~~ 238 (262)
+.|..|...+.. .....=|..||..|....+..
T Consensus 52 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p 85 (89)
T 1x64_A 52 FVCADCNLNLKQKGYFFVEGELYCETHARARTSG 85 (89)
T ss_dssp CCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSS
T ss_pred CEecCCCCCCCCCCeEeECCEEECHHHHHHHhCC
Confidence 678899888765 345567899999999887663
No 352
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.26 E-value=10 Score=25.07 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=27.5
Q ss_pred cCcccccccccccc-eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|..|...+.-+ ..=.||.+||..- ++. ....|++--...+
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~H---Ry~-e~H~C~fDyk~~g 68 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTH---RYP-ESHECQFDFKGVA 68 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTT---CST-TTSCCCSCTTSCC
T ss_pred CccchhhcCcccccceEeccCCEecccc---CCC-cCCCCcCchhHHh
Confidence 47799999865433 2238999999843 333 3455887655444
No 353
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.21 E-value=18 Score=23.64 Aligned_cols=32 Identities=16% Similarity=0.452 Sum_probs=24.2
Q ss_pred Ccccccccccccceec-c-ccccccHHHHHHHhc
Q psy16189 206 LTCPSCKVKRKDAVLT-K-CFHVFCWDCLRTRYE 237 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l-~-CgH~fC~~Ci~~~~~ 237 (262)
+.|..|...+...... . =|..||..|....+.
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHHhc
Confidence 6799999888755433 2 578999999987665
No 354
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=48.02 E-value=7.7 Score=26.39 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=27.3
Q ss_pred cCccccccccccc--ceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKD--AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~--~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|..|.....- +..=.||.+||..- ++. ....||+-=...+
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~H---Ry~-e~H~C~fDyK~~g 69 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASH---RYA-EAHGCNYDYKSAG 69 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTT---CST-GGGTCCSCCSSSC
T ss_pred CccchhhCCeecccCCeEcCCCCEecccC---CCc-cCCCCcchhhHHH
Confidence 4689999986543 44447999999854 232 2345887544333
No 355
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=47.85 E-value=2 Score=32.24 Aligned_cols=11 Identities=36% Similarity=0.751 Sum_probs=8.1
Q ss_pred CCCccCCCccc
Q psy16189 240 QRKCPKCNAAF 250 (262)
Q Consensus 240 ~~~CP~Cr~~~ 250 (262)
...||.|+.+-
T Consensus 107 ~~~CP~Cgs~~ 117 (139)
T 3a43_A 107 FLACPKCGSHD 117 (139)
T ss_dssp GCSCSSSSCCC
T ss_pred CCcCccccCCc
Confidence 35699998763
No 356
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=47.47 E-value=14 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.595 Sum_probs=23.3
Q ss_pred cCccccccccc-c--cceeccccccccHHHHHH
Q psy16189 205 TLTCPSCKVKR-K--DAVLTKCFHVFCWDCLRT 234 (262)
Q Consensus 205 ~~~C~iC~~~~-~--~~v~l~CgH~fC~~Ci~~ 234 (262)
.+.|.+|.... . ....+.|.-.||..|+..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 47899998643 2 235679999999999996
No 357
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.39 E-value=5.2 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=10.7
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..||.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 45679999998865
No 358
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.36 E-value=88 Score=23.52 Aligned_cols=79 Identities=22% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 27 DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVE 106 (262)
Q Consensus 27 ~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~le 106 (262)
..+....+|+-.+.+-+ .+.+ ..++..+........+.-..|..=+..|...++.-...+..|.+-...+...+...+
T Consensus 43 ~vrq~Ia~LP~eVsd~s-~l~k-lkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e 120 (152)
T 4fla_A 43 TVRQKIASLPQEVQDVS-LLEK-ITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKE 120 (152)
T ss_dssp HHHHHHHTSCGGGTCGG-GGGG-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccCHH-HHHH-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555433 2222 234444444444444444555555555666555555555555554444444443333
Q ss_pred H
Q psy16189 107 K 107 (262)
Q Consensus 107 k 107 (262)
+
T Consensus 121 ~ 121 (152)
T 4fla_A 121 K 121 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 359
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.17 E-value=11 Score=24.26 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=21.0
Q ss_pred cCcccccccccc--cceeccccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~--~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...|+.|...+. ..++..-|..|-..| +.|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC---------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT---------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc---------CeECCCCCCCCC
Confidence 356888888774 334433343333333 346666666654
No 360
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.07 E-value=63 Score=21.71 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=31.0
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 37 QQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~ 82 (262)
..|..++..+.++.++...-.+-|..++.-|-.|+.|+.+-+..++
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3455566666667777666667777777777777777776665544
No 361
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.00 E-value=9 Score=25.10 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=21.6
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|..|...+...++..-+..|-..| +.|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCC
Confidence 467888888776655544443333333 24566666553
No 362
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.75 E-value=1.6e+02 Score=26.42 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy16189 173 AQLRRKT 179 (262)
Q Consensus 173 ~~l~~~~ 179 (262)
..++.++
T Consensus 178 ~~l~~ki 184 (464)
T 1m1j_B 178 DSLHKKI 184 (464)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 363
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=46.65 E-value=8.9 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.543 Sum_probs=9.6
Q ss_pred cCcccccccccccc
Q psy16189 205 TLTCPSCKVKRKDA 218 (262)
Q Consensus 205 ~~~C~iC~~~~~~~ 218 (262)
.+.|++|...|...
T Consensus 15 ~~~C~~C~~~f~~~ 28 (86)
T 1x6h_A 15 PYACSHCDKTFRQK 28 (86)
T ss_dssp CEECSSSSCEESSH
T ss_pred CCcCCCCCCccCCH
Confidence 46788888777543
No 364
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.57 E-value=47 Score=20.20 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 136 HLEKYHAQLKEAQQ 149 (262)
Q Consensus 136 ~l~~l~~~~~~~~~ 149 (262)
++..|..+|.++..
T Consensus 12 ~V~~L~~kVdqLss 25 (52)
T 1jcd_A 12 DAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 365
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.54 E-value=32 Score=18.15 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 70 LHEQVNALKLQIDAMHTAIRKLEE 93 (262)
Q Consensus 70 l~~e~~~l~~~~~~~~~~i~~l~e 93 (262)
|+.+++.|+.-+.+.++.+.+|++
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 366
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=46.47 E-value=26 Score=24.29 Aligned_cols=50 Identities=28% Similarity=0.473 Sum_probs=28.8
Q ss_pred cCcccccccccccc---------------ee-c--cccccccH-HHHHHH----hccCCCCccC--CCcccCCCC
Q psy16189 205 TLTCPSCKVKRKDA---------------VL-T--KCFHVFCW-DCLRTR----YETRQRKCPK--CNAAFGAND 254 (262)
Q Consensus 205 ~~~C~iC~~~~~~~---------------v~-l--~CgH~fC~-~Ci~~~----~~~~~~~CP~--Cr~~~~~~d 254 (262)
.+.|++|...|... .. . .||-.|-. .-+... ...+...||. |+..|....
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~ 108 (124)
T 1ubd_C 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQST 108 (124)
T ss_dssp CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTT
T ss_pred CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHH
Confidence 47899999887442 11 1 26666622 222222 2234578975 999997543
No 367
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=46.02 E-value=13 Score=26.95 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=15.4
Q ss_pred Ccccccccccccc-eecc---ccccccH
Q psy16189 206 LTCPSCKVKRKDA-VLTK---CFHVFCW 229 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~---CgH~fC~ 229 (262)
..|..|...+... ++.. .+|.-|+
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCL 89 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTS
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEccccc
Confidence 5799999988765 3443 3454444
No 368
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.95 E-value=17 Score=23.98 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=27.4
Q ss_pred cCcccccccccc-cceec---cccccccHHHHH---HHhc-cCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRK-DAVLT---KCFHVFCWDCLR---TRYE-TRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~-~~v~l---~CgH~fC~~Ci~---~~~~-~~~~~CP~Cr~~~~~~ 253 (262)
.+.| +|...+. ....+ .|..=|-..|+. .-.. .....||.|....+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 67 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCC
Confidence 4667 8988763 22233 454444455553 2221 2467899998876543
No 369
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=45.88 E-value=68 Score=21.78 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy16189 144 LKEAQQVVTE 153 (262)
Q Consensus 144 ~~~~~~~~~~ 153 (262)
+.+++..+.+
T Consensus 48 i~el~akidd 57 (101)
T 1d7m_A 48 LRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 370
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.68 E-value=9.1 Score=20.84 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQK 24 (42)
T ss_dssp CSBCCTTTTCCBSSH
T ss_pred CCeeCCCccchhCCH
Confidence 456799999998753
No 371
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.50 E-value=12 Score=24.69 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=8.5
Q ss_pred cCcccccccccc
Q psy16189 205 TLTCPSCKVKRK 216 (262)
Q Consensus 205 ~~~C~iC~~~~~ 216 (262)
...|+.|...+.
T Consensus 15 ~~~C~~C~~~I~ 26 (80)
T 2dj7_A 15 PSHCAGCKEEIK 26 (80)
T ss_dssp CSCCTTTCCCCS
T ss_pred CCCCcCcCCeeC
Confidence 356888888764
No 372
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.49 E-value=63 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy16189 21 TGQAFEDMQEQN 32 (262)
Q Consensus 21 ~~~a~e~~q~q~ 32 (262)
+|.-++.+-.+|
T Consensus 7 mgkevEnLi~EN 18 (77)
T 2w83_C 7 MGREVENLILEN 18 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 333333333333
No 373
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=45.40 E-value=5.8 Score=20.63 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 6 k~~~C~~C~k~f~~~ 20 (35)
T 1srk_A 6 RPFVCRICLSAFTTK 20 (35)
T ss_dssp SCEECSSSCCEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 456799999988653
No 374
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=45.34 E-value=5.3 Score=29.37 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.7
Q ss_pred Ccccccccc--------------cccceeccccccccHH
Q psy16189 206 LTCPSCKVK--------------RKDAVLTKCFHVFCWD 230 (262)
Q Consensus 206 ~~C~iC~~~--------------~~~~v~l~CgH~fC~~ 230 (262)
..|+.|... ....+.|.|||+.|..
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr 67 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGR 67 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECT
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCC
Confidence 579999873 2334788999999955
No 375
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.21 E-value=6.1 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=11.1
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 8 LLYDCHICERKFKNE 22 (36)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCccCCH
Confidence 345799999888653
No 376
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.15 E-value=13 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=17.4
Q ss_pred CcccccccccccceeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
..|+.|...+...++..-|..|-..| +.|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC---------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT---------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh---------CCcccCCCcCC
Confidence 34666666554443333333222222 34666666664
No 377
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.14 E-value=50 Score=20.01 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy16189 164 KTKRLQEEIA 173 (262)
Q Consensus 164 ~~~~~e~e~~ 173 (262)
++..+.++++
T Consensus 38 el~~Lkeele 47 (51)
T 3m91_A 38 QLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 378
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=45.00 E-value=14 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=22.8
Q ss_pred Cccccccccccc-----ceeccccccccHHHHHHHhccCCCCccCCCcccCCC
Q psy16189 206 LTCPSCKVKRKD-----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 206 ~~C~iC~~~~~~-----~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 253 (262)
..|+.|...+.. .++..=|..|-..| +.|..|+.++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC---------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT---------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc---------CEehhcCCCCCCC
Confidence 468888887764 34433333333333 4578888887643
No 379
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.80 E-value=9.8 Score=20.70 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 9 KPYSCAECKETFSDN 23 (42)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeECCCCCCccCCH
Confidence 456799999988653
No 380
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.77 E-value=39 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16189 67 KDILHEQVNALKLQIDA 83 (262)
Q Consensus 67 k~~l~~e~~~l~~~~~~ 83 (262)
..+..+.+..|+.++..
T Consensus 9 n~a~qqDIddlkrQN~~ 25 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNAL 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHH
Confidence 33344444444443333
No 381
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=44.60 E-value=11 Score=21.07 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=12.1
Q ss_pred CCCCccCCCcccCCCC
Q psy16189 239 RQRKCPKCNAAFGAND 254 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~d 254 (262)
++..||.|+..|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ely_A 11 KPFKCVECGKGFSRRS 26 (46)
T ss_dssp CSBCCSSSCCCBSSTT
T ss_pred CCcccCccCcccCCHH
Confidence 4567999999987643
No 382
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.58 E-value=98 Score=23.28 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 156 SSLEAEAYKTKRLQEEIAQLRRKTE 180 (262)
Q Consensus 156 ~~le~~~~~~~~~e~e~~~l~~~~~ 180 (262)
.++.....+.+.++.|-..|-.+|-
T Consensus 110 lq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 110 IENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555555544444443
No 383
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.46 E-value=10 Score=21.21 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 456799999998653
No 384
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.34 E-value=10 Score=20.89 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2en7_A 11 KPYVCNECGKAFRSK 25 (44)
T ss_dssp SSSCCTTTCCCCSSH
T ss_pred cCeECCCCCCccCCH
Confidence 456799999998653
No 385
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=43.99 E-value=6.6 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=11.7
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 7 kp~~C~~CgK~F~~~ 21 (36)
T 1fv5_A 7 ARFMCLPCGIAFSSP 21 (36)
T ss_dssp CCCEETTTTEECSCH
T ss_pred cCeECCCCCCccCCH
Confidence 467799999998753
No 386
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.97 E-value=11 Score=21.06 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2yti_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCh
Confidence 456799999998653
No 387
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=43.52 E-value=13 Score=28.43 Aligned_cols=13 Identities=38% Similarity=1.048 Sum_probs=7.3
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
+..||.|+..|..
T Consensus 161 ~~~C~~C~~~f~~ 173 (190)
T 2i13_A 161 PYKCPECGKSFSR 173 (190)
T ss_dssp CEECTTTCCEESS
T ss_pred CeECCCCCCccCC
Confidence 3456666666543
No 388
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.51 E-value=7.3 Score=22.27 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=19.1
Q ss_pred cCcccccccccccceeccccccccHHHHHHHhccCCCCccCCCc
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
.+.|++|...|.....|. .|. ......++..|+.|+.
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 12 QVACEICGKIFRDVYHLN-RHK------LSHSGEKPYSSGPSSG 48 (48)
T ss_dssp SEEETTTTEEESSHHHHH-HHG------GGSCSCCCCCSCCCCC
T ss_pred CeeCCCCCcccCCHHHHH-HHH------HhcCCCCCccCCCCCC
Confidence 467888877776542221 011 0011234567999963
No 389
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.93 E-value=12 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.791 Sum_probs=11.7
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq2_A 11 KPYQCNECGKAFSQT 25 (46)
T ss_dssp CSSSCCSSCCCCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 456799999998653
No 390
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.76 E-value=54 Score=19.71 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 60 HKLAREEKDILHEQVNALKLQIDA 83 (262)
Q Consensus 60 ~~~~~~~k~~l~~e~~~l~~~~~~ 83 (262)
|..+-...+.|..|+..|+..+..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 445555667777777777776654
No 391
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.74 E-value=12 Score=20.46 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 10 KPYPCEICGTRFRHL 24 (42)
T ss_dssp CCBCCSSSCCCBSSH
T ss_pred CCEECCCCCCccCCH
Confidence 456799999998753
No 392
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.44 E-value=7.9 Score=25.17 Aligned_cols=42 Identities=21% Similarity=0.552 Sum_probs=24.3
Q ss_pred cccccccccccceec---cccccccHHHHHHHhc---cC-CCCccCCCc
Q psy16189 207 TCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYE---TR-QRKCPKCNA 248 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 248 (262)
.|.+|...-....++ .|...|-..|+.+-+. .+ ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 356777543333333 6666666777764332 34 567999964
No 393
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.14 E-value=12 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em6_A 11 KCYKCDVCGKEFSQS 25 (46)
T ss_dssp CCCBCSSSCCBCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 456799999998653
No 394
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.97 E-value=2.8 Score=25.95 Aligned_cols=43 Identities=23% Similarity=0.586 Sum_probs=25.0
Q ss_pred cCcccccccccccceeccccccccHHHHHHHh---ccCCCCccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY---ETRQRKCPKCN 247 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~~~---~~~~~~CP~Cr 247 (262)
...|.+|...-.-...-.|...|-..|+.+-+ ..+...||.|.
T Consensus 9 ~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 46799999742111122666666666766432 23456688884
No 395
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.93 E-value=12 Score=20.79 Aligned_cols=15 Identities=20% Similarity=0.662 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ep1_A 11 KPYECSDCGKSFIKK 25 (46)
T ss_dssp CSSCCSSSCCCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 456799999998653
No 396
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=41.85 E-value=4.4 Score=31.27 Aligned_cols=45 Identities=20% Similarity=0.568 Sum_probs=27.6
Q ss_pred ccCcccccccccccc-eec---cccccccHHHHHHHh----ccCCCCccCCCcc
Q psy16189 204 ETLTCPSCKVKRKDA-VLT---KCFHVFCWDCLRTRY----ETRQRKCPKCNAA 249 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~-v~l---~CgH~fC~~Ci~~~~----~~~~~~CP~Cr~~ 249 (262)
....| +|....... ..+ .|..-|...|+.-.. ..+...||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 35779 999876422 222 676667777774211 1346779999763
No 397
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.57 E-value=12 Score=20.98 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eon_A 11 KPYKCQVCGKAFRVS 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cccCCCCCCcccCcH
Confidence 456799999988653
No 398
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=41.55 E-value=13 Score=23.22 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.4
Q ss_pred cCCCCccCCCcccCCC
Q psy16189 238 TRQRKCPKCNAAFGAN 253 (262)
Q Consensus 238 ~~~~~CP~Cr~~~~~~ 253 (262)
.+...||.|+..|...
T Consensus 47 ~~~~~C~~C~~~f~~~ 62 (73)
T 1f2i_G 47 QKPFQCRICMRNFSRS 62 (73)
T ss_dssp CCCEECTTTCCEESCH
T ss_pred CCCeECCCCCchhCCH
Confidence 3557799999998754
No 399
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.39 E-value=4.9 Score=21.54 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=10.6
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 8 HLYYCSQCHYSSIT 21 (37)
T ss_dssp CEEECSSSSCEEEC
T ss_pred cCeECCCCCcccCC
Confidence 34679999998864
No 400
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.22 E-value=12 Score=20.88 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 11 KPYECDVCRKAFSHH 25 (46)
T ss_dssp SSCBCTTTCCBCSSS
T ss_pred CCcCCCCcCchhCCH
Confidence 456799999988754
No 401
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.20 E-value=13 Score=20.82 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoh_A 11 KPYECKECRKTFIQI 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCCcCchhCCH
Confidence 456799999998653
No 402
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.16 E-value=13 Score=20.81 Aligned_cols=15 Identities=40% Similarity=0.871 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq1_A 11 KPYKCNECGKAFRAH 25 (46)
T ss_dssp CCCCCTTTTCCCSSH
T ss_pred CCeECCcCChhhCCH
Confidence 456799999988653
No 403
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=40.96 E-value=85 Score=21.51 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 3 LGQVSGNEEEALLNEMEVTGQAF-EDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 3 ~~~~~~~~~~~l~~Eie~~~~a~-e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
+|..-|+|.+++..|......-- ++...+...-++.+.-....+..|...=.| -|+.-+.|+..|+.++
T Consensus 15 LLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~k----------mKq~YEeEI~rLr~eL 84 (92)
T 3vp9_A 15 LLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRK----------MKDAYEEEIKHLKLGL 84 (92)
T ss_dssp --CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 34555677777777766655332 355544333333333333333333333222 2445556666676666
Q ss_pred HH
Q psy16189 82 DA 83 (262)
Q Consensus 82 ~~ 83 (262)
+.
T Consensus 85 e~ 86 (92)
T 3vp9_A 85 EQ 86 (92)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 404
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.71 E-value=6.1 Score=26.30 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=23.3
Q ss_pred cccccccccccceec---cccccccHHHHHHHh---ccC-CCCccCCCc
Q psy16189 207 TCPSCKVKRKDAVLT---KCFHVFCWDCLRTRY---ETR-QRKCPKCNA 248 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~---~~~-~~~CP~Cr~ 248 (262)
.|.+|...-....++ .|...|-..|+.+-+ ..+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 567777543222233 666566666666422 234 567999853
No 405
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.56 E-value=12 Score=20.90 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yth_A 11 KPFQCEECGKRFTQN 25 (46)
T ss_dssp SSBCCSSSCCCBSSH
T ss_pred cCCCCCCCCcccCCH
Confidence 456799999988653
No 406
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.56 E-value=13 Score=20.72 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 11 KPYKCSDCGKSFTWK 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred CCccCCccChhhCCH
Confidence 456799999988653
No 407
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.01 E-value=68 Score=20.13 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy16189 101 VLTNVEKELH 110 (262)
Q Consensus 101 ~i~~lekel~ 110 (262)
.++.|+.|+.
T Consensus 45 ~i~~L~~E~~ 54 (63)
T 1ci6_A 45 RADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 408
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.99 E-value=62 Score=19.66 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 126 SAQSAADLKLHLEKYHAQLKEAQQ 149 (262)
Q Consensus 126 ~~~~~~~l~~~l~~l~~~~~~~~~ 149 (262)
+...+..|..+++.|...+..++.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554444
No 409
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.93 E-value=77 Score=20.72 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=27.0
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 37 QQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQI 81 (262)
Q Consensus 37 ~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~ 81 (262)
..|..++..+..+..+...-.+-|..++.-|-.|+.|+.+-+..+
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555655556666666766667777666665544
No 410
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.92 E-value=13 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
+...|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 11 NPFICSECGKVFTHK 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCEECCccCcccCCH
Confidence 456799999988653
No 411
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=39.84 E-value=14 Score=32.33 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=20.2
Q ss_pred ccceeccccccccHHHHHHHhcc----CCCCccCCCcccCC
Q psy16189 216 KDAVLTKCFHVFCWDCLRTRYET----RQRKCPKCNAAFGA 252 (262)
Q Consensus 216 ~~~v~l~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~ 252 (262)
....++.||+.|-..=+...+.. ..+.||.|+..+..
T Consensus 143 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~lrP 183 (361)
T 1q14_A 143 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKP 183 (361)
T ss_dssp EEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEEE
T ss_pred cccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCEeCC
Confidence 33445567666644333332221 23689999986643
No 412
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.79 E-value=6 Score=32.19 Aligned_cols=42 Identities=21% Similarity=0.552 Sum_probs=21.0
Q ss_pred cccccccccccceec---cccccccHHHHHHHhc---cC-CCCccCCCc
Q psy16189 207 TCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYE---TR-QRKCPKCNA 248 (262)
Q Consensus 207 ~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 248 (262)
.|.+|...-....++ .|...|-..|+.+-+. .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477777643222222 6655555556664332 34 567999964
No 413
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.72 E-value=14 Score=20.61 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eoq_A 11 KPFKCDICGKSFCGR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCcCCchhCCH
Confidence 456799999988653
No 414
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.69 E-value=13 Score=20.75 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en9_A 11 KLFKCNECKKTFTQS 25 (46)
T ss_dssp CCCBCTTTCCBCSSH
T ss_pred CCEECCccCcccCCH
Confidence 456799999988653
No 415
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=39.55 E-value=16 Score=30.63 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=20.9
Q ss_pred cccceeccccccccHHHHHHHhcc----CCCCccCCCcccC
Q psy16189 215 RKDAVLTKCFHVFCWDCLRTRYET----RQRKCPKCNAAFG 251 (262)
Q Consensus 215 ~~~~v~l~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~ 251 (262)
+....++.||+.|-..=+...+.. ..+.||.|+..+.
T Consensus 134 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~lr 174 (289)
T 1q1a_A 134 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 174 (289)
T ss_dssp EEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEE
T ss_pred cCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEEC
Confidence 334445567776654433332311 3468999998664
No 416
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.42 E-value=14 Score=26.65 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=8.3
Q ss_pred CCCccCCCcccC
Q psy16189 240 QRKCPKCNAAFG 251 (262)
Q Consensus 240 ~~~CP~Cr~~~~ 251 (262)
-++|..|+.+|.
T Consensus 88 CF~C~~C~~~L~ 99 (123)
T 2l4z_A 88 CLKCSSCQAQLG 99 (123)
T ss_dssp TSBCTTTCCBGG
T ss_pred ccCcCcCCCccc
Confidence 356777877775
No 417
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.40 E-value=20 Score=23.43 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=7.7
Q ss_pred Ccccccccccc
Q psy16189 206 LTCPSCKVKRK 216 (262)
Q Consensus 206 ~~C~iC~~~~~ 216 (262)
..|..|...+.
T Consensus 16 ~~C~~C~~~I~ 26 (82)
T 2ehe_A 16 NTCAECQQLIG 26 (82)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccCCCccc
Confidence 35777777765
No 418
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.34 E-value=14 Score=20.38 Aligned_cols=15 Identities=20% Similarity=0.669 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (44)
T 2eou_A 11 TTSECQECGKIFRHS 25 (44)
T ss_dssp CCCCCTTTCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 456799999988653
No 419
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.32 E-value=8.9 Score=21.25 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQR 25 (44)
T ss_dssp CSEECSSSSCEESSS
T ss_pred CCeECCCCCchhCCH
Confidence 456799999988754
No 420
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.17 E-value=40 Score=21.96 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=10.6
Q ss_pred CCccCCCcccCCC
Q psy16189 241 RKCPKCNAAFGAN 253 (262)
Q Consensus 241 ~~CP~Cr~~~~~~ 253 (262)
..|+.|+..|...
T Consensus 63 ~~C~~C~k~f~~~ 75 (95)
T 2ej4_A 63 EECPREGKSFKAK 75 (95)
T ss_dssp TTCSSTTCCCSSH
T ss_pred cCCCCCCcccCCH
Confidence 5799999999653
No 421
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=38.90 E-value=15 Score=20.46 Aligned_cols=15 Identities=27% Similarity=0.811 Sum_probs=11.7
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2em0_A 11 KTWKCRECDMCFSQA 25 (46)
T ss_dssp CCCCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 456799999998653
No 422
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.81 E-value=14 Score=20.60 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 456799999998653
No 423
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=38.80 E-value=7.9 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=10.6
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 5 k~~~C~~C~k~f~~ 18 (39)
T 1njq_A 5 RSYTCSFCKREFRS 18 (39)
T ss_dssp SSEECTTTCCEESS
T ss_pred CceECCCCCcccCC
Confidence 34579999988864
No 424
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.73 E-value=8.2 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=10.6
Q ss_pred CCCccCCCcccCCC
Q psy16189 240 QRKCPKCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP~Cr~~~~~~ 253 (262)
...||.|+..|...
T Consensus 65 ~~~C~~C~~~f~~~ 78 (110)
T 2csh_A 65 PYECNICAKRFMWR 78 (110)
T ss_dssp CEECSSSCCEESCH
T ss_pred CeeCCCCcchhcCH
Confidence 45699999988643
No 425
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.70 E-value=7 Score=25.73 Aligned_cols=47 Identities=23% Similarity=0.598 Sum_probs=28.3
Q ss_pred cCcccccccccccceec---cccccccHHHHHHHh--------ccCCCCccCCCcccCC
Q psy16189 205 TLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTRY--------ETRQRKCPKCNAAFGA 252 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~--------~~~~~~CP~Cr~~~~~ 252 (262)
.+.| +|...+.....+ .|..=|-..|+.-.. ......||.|....+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 4678 899877643344 555555566663211 2356789999775543
No 426
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.69 E-value=22 Score=24.42 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.7
Q ss_pred CCCccCCCcccCC
Q psy16189 240 QRKCPKCNAAFGA 252 (262)
Q Consensus 240 ~~~CP~Cr~~~~~ 252 (262)
+..||.|+..|..
T Consensus 80 ~~~C~~C~k~f~~ 92 (115)
T 2dmi_A 80 VLKCMYCGHSFES 92 (115)
T ss_dssp SCBCSSSCCBCSS
T ss_pred ceECCCCCCccCC
Confidence 4568888888864
No 427
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.49 E-value=15 Score=20.47 Aligned_cols=15 Identities=33% Similarity=0.829 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 456799999988653
No 428
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=38.46 E-value=14 Score=20.59 Aligned_cols=15 Identities=27% Similarity=0.791 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 11 KPYECKECGKAFSQT 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CceECCCCCchhCCH
Confidence 456799999988653
No 429
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.39 E-value=15 Score=20.50 Aligned_cols=15 Identities=40% Similarity=0.924 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emz_A 11 RPFKCNECGKGFGRR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 456799999988653
No 430
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.38 E-value=17 Score=23.75 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=8.5
Q ss_pred CCCCccCCCccc
Q psy16189 239 RQRKCPKCNAAF 250 (262)
Q Consensus 239 ~~~~CP~Cr~~~ 250 (262)
+...||.|+..+
T Consensus 44 d~irCp~CG~RI 55 (70)
T 1twf_L 44 DAVRCKDCGHRI 55 (70)
T ss_dssp STTCCSSSCCCC
T ss_pred CCccCCCCCceE
Confidence 456799998833
No 431
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=38.32 E-value=17 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.660 Sum_probs=25.2
Q ss_pred Cccccccccccc----------ceeccccccccHHHHHHHhcc
Q psy16189 206 LTCPSCKVKRKD----------AVLTKCFHVFCWDCLRTRYET 238 (262)
Q Consensus 206 ~~C~iC~~~~~~----------~v~l~CgH~fC~~Ci~~~~~~ 238 (262)
-.||+|.....+ ...+.||-.||..|.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 457888765422 367899999999999987765
No 432
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.19 E-value=15 Score=20.57 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
+...|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eom_A 11 RGHRCSDCGKFFLQA 25 (46)
T ss_dssp SSCCCSSSCCCCSSH
T ss_pred CCcCCCCCCCeeCCh
Confidence 456799999988653
No 433
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.12 E-value=14 Score=20.62 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 456799999988653
No 434
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.08 E-value=15 Score=20.21 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (43)
T 2yrm_A 9 GAFFCNECDCRFSEE 23 (43)
T ss_dssp CCBCCSSSCCCBSSH
T ss_pred CCEECCCCCCeeCCh
Confidence 456799999988653
No 435
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=37.84 E-value=13 Score=23.37 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=22.7
Q ss_pred cccCccccccc---ccccceeccccccccH-HHHHH
Q psy16189 203 KETLTCPSCKV---KRKDAVLTKCFHVFCW-DCLRT 234 (262)
Q Consensus 203 ~~~~~C~iC~~---~~~~~v~l~CgH~fC~-~Ci~~ 234 (262)
.....|.||.. .+..-....||-.||+ .|...
T Consensus 9 ~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~ 44 (59)
T 1x4s_A 9 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRT 44 (59)
T ss_dssp CCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred CCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHH
Confidence 33467999985 3444456799999987 77775
No 436
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=37.74 E-value=9.2 Score=20.81 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 10 ~~~~C~~C~k~f~~~ 24 (42)
T 2epc_A 10 TPYLCGQCGKSFTQR 24 (42)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCcccCCH
Confidence 456799999988653
No 437
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=37.73 E-value=16 Score=18.10 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=10.1
Q ss_pred CCCcc--CCCcccCCC
Q psy16189 240 QRKCP--KCNAAFGAN 253 (262)
Q Consensus 240 ~~~CP--~Cr~~~~~~ 253 (262)
+..|| .|+..|...
T Consensus 2 p~~C~~~~C~k~f~~~ 17 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRS 17 (31)
T ss_dssp CCBCCSTTCCCBCSSH
T ss_pred CcCCcCCCCCcccCCH
Confidence 35687 899988653
No 438
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=37.65 E-value=25 Score=24.90 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=25.7
Q ss_pred ccCccccccccc-------cccee--ccccccccHHHHHH------HhccCCCCccCCC
Q psy16189 204 ETLTCPSCKVKR-------KDAVL--TKCFHVFCWDCLRT------RYETRQRKCPKCN 247 (262)
Q Consensus 204 ~~~~C~iC~~~~-------~~~v~--l~CgH~fC~~Ci~~------~~~~~~~~CP~Cr 247 (262)
....|.+|...- ....+ ..|+..|-..|+.. .+..+...||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346788887642 11222 27877777788742 3344556677763
No 439
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=37.61 E-value=9.9 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.584 Sum_probs=20.2
Q ss_pred ccCcccccccccccceeccccccccHHHHH
Q psy16189 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLR 233 (262)
Q Consensus 204 ~~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~ 233 (262)
....|+.|.+.+..+ |..+|.+|..
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 457799999987766 8888999964
No 440
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.59 E-value=15 Score=20.48 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=11.6
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (47)
T 2epx_A 11 KPYECIECGKAFIQN 25 (47)
T ss_dssp CSBCCSSSCCCBSSH
T ss_pred CCEECCccCchhCCh
Confidence 456799999998753
No 441
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.54 E-value=10 Score=21.32 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=11.4
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCS 25 (46)
T ss_dssp CCEECSSSCCEESSS
T ss_pred CCEECcCCCCcCCCH
Confidence 456799999988654
No 442
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.40 E-value=2.9 Score=22.23 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=7.0
Q ss_pred CCccCCCcccC
Q psy16189 241 RKCPKCNAAFG 251 (262)
Q Consensus 241 ~~CP~Cr~~~~ 251 (262)
..||+|+....
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 45777776554
No 443
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.27 E-value=92 Score=20.86 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16189 164 KTKRLQEEIAQLRRKTERM 182 (262)
Q Consensus 164 ~~~~~e~e~~~l~~~~~~~ 182 (262)
.+..++.+++.+-.+|..+
T Consensus 64 ~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 64 DMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 444
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.25 E-value=15 Score=20.48 Aligned_cols=15 Identities=20% Similarity=0.724 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 11 KPYKCEDCGKGYNRR 25 (46)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred CCeeCcccCchhCCH
Confidence 456799999998653
No 445
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.15 E-value=15 Score=20.36 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 11 KLYNCKECGKSFSRA 25 (46)
T ss_dssp CCCCBTTTTBCCSCH
T ss_pred CCeECCCCCCccCch
Confidence 456799999988653
No 446
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=37.01 E-value=12 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=12.4
Q ss_pred CCccCCCcccCCCCcccc
Q psy16189 241 RKCPKCNAAFGANDYHRL 258 (262)
Q Consensus 241 ~~CP~Cr~~~~~~d~~~i 258 (262)
..||.||.+....++.+|
T Consensus 18 ~~CP~CG~~t~~ahParf 35 (60)
T 2aus_D 18 ETCPVCGEKTKVAHPPRF 35 (60)
T ss_dssp SBCTTTCSBCEESSCCCC
T ss_pred ccCcCCCCccCCCCCCCC
Confidence 358999888766655544
No 447
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=36.88 E-value=14 Score=30.35 Aligned_cols=36 Identities=14% Similarity=0.449 Sum_probs=19.1
Q ss_pred ccceeccccccccHHHHHHHhc-cCCCCccCCCc-ccC
Q psy16189 216 KDAVLTKCFHVFCWDCLRTRYE-TRQRKCPKCNA-AFG 251 (262)
Q Consensus 216 ~~~v~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~-~~~ 251 (262)
....++.||+.|-..=+...+. ...+.||.|+. .+.
T Consensus 122 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lr 159 (253)
T 1ma3_A 122 DKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVK 159 (253)
T ss_dssp EEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEE
T ss_pred CeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCCcccc
Confidence 3334556766653332222222 23578999998 543
No 448
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.72 E-value=1.3e+02 Score=22.55 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 130 AADLKLHLEKYHAQLKEAQQVVTEK 154 (262)
Q Consensus 130 ~~~l~~~l~~l~~~~~~~~~~~~~~ 154 (262)
...++.++..++.++..++.+...+
T Consensus 105 l~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 105 LISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 449
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=36.67 E-value=9.6 Score=20.79 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
+...||.|+..|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2el5_A 9 NPYECSECGKAFNRK 23 (42)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCccCCCcChhhCCH
Confidence 456799999988653
No 450
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.55 E-value=16 Score=20.42 Aligned_cols=15 Identities=47% Similarity=1.003 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 11 KPYKCMECGKAFGDN 25 (46)
T ss_dssp CSSSBTTTTBCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 456799999988653
No 451
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.51 E-value=92 Score=20.63 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 66 EKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTN 104 (262)
Q Consensus 66 ~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~ 104 (262)
+.++|..--..|+.=-.+....|.+++.....+...++.
T Consensus 26 El~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 26 ELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334443344444444444433333333333
No 452
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.47 E-value=9.9 Score=20.62 Aligned_cols=15 Identities=27% Similarity=0.762 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (41)
T 2ept_A 9 RVYECQECGKSFRQK 23 (41)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCCcCCH
Confidence 346799999988653
No 453
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.40 E-value=15 Score=25.64 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=21.8
Q ss_pred cCcccccccccccceeccccccccHHHHHH-H---hccCCCCccCCCcccCCC
Q psy16189 205 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRT-R---YETRQRKCPKCNAAFGAN 253 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~CgH~fC~~Ci~~-~---~~~~~~~CP~Cr~~~~~~ 253 (262)
.+.|+.|...|.....|. .|. .. . ...++..|+.|+..|...
T Consensus 18 py~C~~Cgk~F~~~~~L~-~H~------r~~H~~~~~ekpf~C~~Cgk~F~~~ 63 (102)
T 2ghf_A 18 GYECKYCTFQTPDLNMFT-FHV------DSEHPNVVLNSSYVCVECNFLTKRY 63 (102)
T ss_dssp SEECSSCSCEESCHHHHH-HHH------HHHCSSCCCSCCEEETTTTEEESST
T ss_pred CcCCCCCCCccCCHHHHH-HHH------HhhCCCCCCCCCcCCCCCCcccCCH
Confidence 467888887775432221 110 00 0 012345688888877643
No 454
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.29 E-value=10 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=11.3
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2eoj_A 11 NPYECCECGKVFSRK 25 (44)
T ss_dssp CSCEETTTTEECSSH
T ss_pred cCeeCCCCCCccCCH
Confidence 456799999988653
No 455
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.25 E-value=92 Score=20.54 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy16189 98 LQTVLTNVEKELHL 111 (262)
Q Consensus 98 l~~~i~~lekel~~ 111 (262)
....|..|..++..
T Consensus 40 Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 40 ARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 456
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=36.17 E-value=16 Score=22.01 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred Ccccccccccccc-eecc----cc---ccccHHHHHHHhccCCCCccCCC
Q psy16189 206 LTCPSCKVKRKDA-VLTK----CF---HVFCWDCLRTRYETRQRKCPKCN 247 (262)
Q Consensus 206 ~~C~iC~~~~~~~-v~l~----Cg---H~fC~~Ci~~~~~~~~~~CP~Cr 247 (262)
-.|.+|..++.+. ..+. |. |..|-.=...-.......||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3577888877432 2232 43 44443322222223567799884
No 457
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.14 E-value=16 Score=20.32 Aligned_cols=15 Identities=27% Similarity=0.798 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 456799999988653
No 458
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=35.62 E-value=1.5e+02 Score=22.69 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 69 ILHEQVNALKLQIDAMHTAIRKL 91 (262)
Q Consensus 69 ~l~~e~~~l~~~~~~~~~~i~~l 91 (262)
..+.-++.-+..+++-++.+..+
T Consensus 20 ~aek~~~~k~~~le~ek~~l~~~ 42 (169)
T 3k29_A 20 RAEKVVKEKRRLLELEQEKLRER 42 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333333
No 459
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=35.54 E-value=3.2 Score=25.90 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=18.8
Q ss_pred cccccHHHHHHHhccCCCCccCCCc
Q psy16189 224 FHVFCWDCLRTRYETRQRKCPKCNA 248 (262)
Q Consensus 224 gH~fC~~Ci~~~~~~~~~~CP~Cr~ 248 (262)
.|+.|..|-...+..+...|..|+-
T Consensus 16 tH~~CrRCG~~syH~qK~~Ca~CGy 40 (57)
T 1vq8_1 16 THTKCRRCGEKSYHTKKKVCSSCGF 40 (57)
T ss_dssp CEEECTTTCSEEEETTTTEETTTCT
T ss_pred ccccccccCChhhhccccccccccC
Confidence 4777888877766666777999986
No 460
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.38 E-value=23 Score=22.20 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.6
Q ss_pred cCccccccccccc
Q psy16189 205 TLTCPSCKVKRKD 217 (262)
Q Consensus 205 ~~~C~iC~~~~~~ 217 (262)
...|..|...+..
T Consensus 11 ~~~C~~C~~~i~~ 23 (72)
T 3f6q_B 11 SATCERCKGGFAP 23 (72)
T ss_dssp TCBCTTTCCBCCT
T ss_pred CccchhcCccccC
Confidence 3579999988763
No 461
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.07 E-value=17 Score=20.24 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.5
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 11 KPFDCIDCGKAFSDH 25 (46)
T ss_dssp CSBCCTTTCCCBSSH
T ss_pred CCeECCCCCceeCCH
Confidence 456799999988653
No 462
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.03 E-value=17 Score=19.32 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=9.3
Q ss_pred CCCccCCCcccC
Q psy16189 240 QRKCPKCNAAFG 251 (262)
Q Consensus 240 ~~~CP~Cr~~~~ 251 (262)
..+||.|+..+-
T Consensus 3 ~~~C~~C~k~Vy 14 (31)
T 1zfo_A 3 NPNCARCGKIVY 14 (31)
T ss_dssp CCBCSSSCSBCC
T ss_pred CCcCCccCCEEe
Confidence 357999998773
No 463
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=34.94 E-value=12 Score=36.52 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=20.0
Q ss_pred CcccccccccccceeccccccccH
Q psy16189 206 LTCPSCKVKRKDAVLTKCFHVFCW 229 (262)
Q Consensus 206 ~~C~iC~~~~~~~v~l~CgH~fC~ 229 (262)
..|..|...-.-.+.|.|||++|.
T Consensus 216 ~~C~~c~~~~~lw~CL~Cg~vgC~ 239 (854)
T 3ihp_A 216 WKCSKCDMRENLWLNLTDGSILCG 239 (854)
T ss_dssp CCCSSSCCCSSEEEETTTCCEEEC
T ss_pred CcCcCcCCcCceEEEecCCCcccc
Confidence 468888887766789999999996
No 464
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=34.86 E-value=7.3 Score=19.98 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=6.5
Q ss_pred CccCCCcccCC
Q psy16189 242 KCPKCNAAFGA 252 (262)
Q Consensus 242 ~CP~Cr~~~~~ 252 (262)
.||+|....+.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 47777665543
No 465
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.82 E-value=11 Score=21.10 Aligned_cols=15 Identities=40% Similarity=0.851 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eow_A 11 KPYKCNECGKAFRAR 25 (46)
T ss_dssp CCEECTTSCCEESSH
T ss_pred CCeeccccCChhcCH
Confidence 456799999988653
No 466
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=34.68 E-value=19 Score=23.21 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=21.1
Q ss_pred cCcccccccccccceeccc--cccccHHHHHHHh
Q psy16189 205 TLTCPSCKVKRKDAVLTKC--FHVFCWDCLRTRY 236 (262)
Q Consensus 205 ~~~C~iC~~~~~~~v~l~C--gH~fC~~Ci~~~~ 236 (262)
...|+.|......+..+.= |=..|..|+..-.
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c~ 51 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCN 51 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHHHH
Confidence 3689999987755433322 4346999997643
No 467
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.67 E-value=11 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=11.2
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yts_A 11 KPYICNECGKSFIQK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCEECCCCChhhCCh
Confidence 446799999988653
No 468
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=34.65 E-value=18 Score=30.48 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccccceeccccccccHHHHHHHh-ccCCCCccCCCcccC
Q psy16189 214 KRKDAVLTKCFHVFCWDCLRTRY-ETRQRKCPKCNAAFG 251 (262)
Q Consensus 214 ~~~~~v~l~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~ 251 (262)
.+....++.||+.|-..-+...+ ....+.||.|+..+.
T Consensus 136 s~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 174 (285)
T 3glr_A 136 TFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVK 174 (285)
T ss_dssp EEEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEE
T ss_pred CCCeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCccC
Confidence 34444556677776544333322 234578999987654
No 469
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.64 E-value=58 Score=17.78 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy16189 103 TNVEKEL 109 (262)
Q Consensus 103 ~~lekel 109 (262)
+.|+.++
T Consensus 18 ~~Le~eV 24 (34)
T 2oxj_A 18 XHLEXEV 24 (34)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3333333
No 470
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.52 E-value=11 Score=24.30 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=26.9
Q ss_pred cCcccccccccccc----eeccccccccHHHHHHHhccCCCCccCCCcccC
Q psy16189 205 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251 (262)
Q Consensus 205 ~~~C~iC~~~~~~~----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 251 (262)
...|..|.....-+ ..=.||.+||..- ++. ....|++-=...+
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~H---Ry~-e~H~C~fDyk~~g 61 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCMLH---RLP-EQHDCTFDHMGRG 61 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTTT---CST-GGGTCSSCSSCSS
T ss_pred CCcchhhCCeecccccCceEecCCCEehhcc---CCc-cccCCcccccccc
Confidence 46899999876544 1228999999843 222 2345777644443
No 471
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.45 E-value=1e+02 Score=20.41 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16189 93 EKERYLQTVLTNVEKELHLR 112 (262)
Q Consensus 93 e~e~~l~~~i~~lekel~~~ 112 (262)
.....|...|..|.+++..+
T Consensus 50 ~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 50 AENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455544444
No 472
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.35 E-value=94 Score=20.06 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 94 KERYLQTVLTNVEKELHLRNQAMD 117 (262)
Q Consensus 94 ~e~~l~~~i~~lekel~~~~~~~~ 117 (262)
.+.-+..+++.+..........+.
T Consensus 29 aE~~y~~k~eel~~~~~~~~~~l~ 52 (77)
T 3trt_A 29 AEEWYKSKFADLSEAANRNNDALR 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334455555555554444443333
No 473
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=34.33 E-value=21 Score=30.50 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=0.0
Q ss_pred cccccccceecc--ccccccHHHHHHHhccC-CCCccCCCccc
Q psy16189 211 CKVKRKDAVLTK--CFHVFCWDCLRTRYETR-QRKCPKCNAAF 250 (262)
Q Consensus 211 C~~~~~~~v~l~--CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~ 250 (262)
++-.+....++. ||+.|-..-+...+... .+.||.|+..+
T Consensus 153 lHGs~~~~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~l 195 (323)
T 1j8f_A 153 AHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLV 195 (323)
T ss_dssp TTEEEEEEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBE
T ss_pred eeCCcceeecCCCccCccccHHHHHHhhccCCCCCCcCCCCcc
No 474
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.33 E-value=11 Score=20.92 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (44)
T 2epv_A 11 KPYECNECGKAFIW 24 (44)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCCcccCc
No 475
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.32 E-value=11 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.842 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eq3_A 11 KPYECNQCGKAFSV 24 (46)
T ss_dssp CSSEETTTTEECSS
T ss_pred CCeECCCCChhhCC
No 476
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.30 E-value=19 Score=23.13 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred ccccceeccccccccHHHHHHHhcc----CCCCccCCCcccCCCCccc
Q psy16189 214 KRKDAVLTKCFHVFCWDCLRTRYET----RQRKCPKCNAAFGANDYHR 257 (262)
Q Consensus 214 ~~~~~v~l~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~d~~~ 257 (262)
.++.....-||-.|-..-+.... . ++..||.|+..|...++..
T Consensus 14 ~~r~~~C~~C~~~~~~~~L~~H~-~~c~~~~~~C~~C~~~~~~~~l~~ 60 (75)
T 2d9k_A 14 PLRLAVCQHCDLELSILKLKEHE-DYCGARTELCGNCGRNVLVKDLKT 60 (75)
T ss_dssp CCCCEECSSSCCEECHHHHHHHH-HHHHHCEEECSSSCCEEETTGGGT
T ss_pred CCcccCCcccChHhhHHHHHHHH-hHcCCCceEcccCCCcCcHHHHHH
No 477
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.24 E-value=12 Score=20.89 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 11 KPCKCTECGKAFCWK 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCCCCCCccCCH
No 478
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.09 E-value=20 Score=19.96 Aligned_cols=14 Identities=21% Similarity=0.852 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
+...|+.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytt_A 11 KPYQCSECGKSFSG 24 (46)
T ss_dssp CTTCCSSSCCCCSS
T ss_pred CCeeCCCCCcccCC
No 479
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=34.02 E-value=17 Score=32.54 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=0.0
Q ss_pred Ccccccccc--cccceecccccccc---HHHHHHHhccCCCC----------ccCCCcccCCCCc
Q psy16189 206 LTCPSCKVK--RKDAVLTKCFHVFC---WDCLRTRYETRQRK----------CPKCNAAFGANDY 255 (262)
Q Consensus 206 ~~C~iC~~~--~~~~v~l~CgH~fC---~~Ci~~~~~~~~~~----------CP~Cr~~~~~~d~ 255 (262)
..|+.|... ....+.+.|||..| ..-..+...++++. |-.|+..+...++
T Consensus 49 ~~C~~c~~~~~~~~~~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l 113 (476)
T 3mhs_A 49 MKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDL 113 (476)
T ss_dssp SBCTTTCCBCSSSEEEESSSSCEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHH
T ss_pred CCcccccCCCCCCceEeCCCCCCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHH
No 480
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.94 E-value=1.5e+02 Score=25.23 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 61 KLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAM 116 (262)
Q Consensus 61 ~~~~~~k~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~ 116 (262)
.++.+....|..++..+...+......|..|+.....+..+|..|+.++..+....
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.93 E-value=11 Score=20.94 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 11 KPYRCGECGKAFAQ 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
No 482
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=33.90 E-value=25 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=0.0
Q ss_pred cccCcccccccccccceecccccc--ccHHHHH
Q psy16189 203 KETLTCPSCKVKRKDAVLTKCFHV--FCWDCLR 233 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l~CgH~--fC~~Ci~ 233 (262)
.....|+.|......+..+.=|+. .|..|+.
T Consensus 9 ~~~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~ 41 (51)
T 2ds5_A 9 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVD 41 (51)
T ss_dssp CCCCBCTTTCCBTTTSSCEEECSSCEEEHHHHH
T ss_pred CCCcEecCCCCCHHHhcccCCCCCCEehHHHHH
No 483
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.74 E-value=12 Score=20.96 Aligned_cols=14 Identities=36% Similarity=0.823 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
+...|+.|+..|..
T Consensus 11 ~~~~C~~C~k~F~~ 24 (46)
T 2emi_A 11 RHYECSECGKAFIQ 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCCCCCCCCcccCC
No 484
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.70 E-value=21 Score=17.74 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=0.0
Q ss_pred CCCCcc--CCCcccCCC
Q psy16189 239 RQRKCP--KCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP--~Cr~~~~~~ 253 (262)
++..|+ .|+..|...
T Consensus 2 k~~~C~~~~C~k~f~~~ 18 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRN 18 (32)
T ss_dssp CSBCCCCTTCCCCBSSS
T ss_pred CCCcCcCCCCCCccCCH
No 485
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.69 E-value=8.9 Score=26.24 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=0.0
Q ss_pred cccCcccccccccccceec---cccccccHHHHHHHhccCCCCccCCCcccCC
Q psy16189 203 KETLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 252 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~~v~l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 252 (262)
...+.|++|...|.....+ .-.| .+...||.|+..|..
T Consensus 14 ~~~~~C~~C~~~f~~~~~l~~H~~~H------------~~~~~C~~C~~~f~~ 54 (107)
T 1wjp_A 14 KEVYQCRLCNAKLSSLLEQGSHERLC------------RNAAVCPYCSLRFFS 54 (107)
T ss_dssp CCCCBCTTTCCBCSSHHHHHHHHHHH------------HHSBCCTTTCCCBSS
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHC------------CCCccCCCCCCccCC
No 486
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.67 E-value=2.6e+02 Score=24.93 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 86 TAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRK---AIESAQSAADLKLHLEKYHAQLKEAQQVVTEK 154 (262)
Q Consensus 86 ~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k---~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 154 (262)
+.|-.+-+.-+.+...++.|..+.+.....+...++. ..++..+...++.++..++.++.++...+...
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.56 E-value=11 Score=20.51 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2en2_A 10 KPYKCETCGARFVQ 23 (42)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCEeCCCcChhhCC
No 488
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=33.51 E-value=2.1e+02 Score=23.97 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q psy16189 18 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKL---------QIDAMHTAI 88 (262)
Q Consensus 18 ie~~~~a~e~~q~q~~~~~~~l~e~e~~~~kl~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~---------~~~~~~~~i 88 (262)
|+.+++.+.++..+...+..+..-.-+...++..|...-.|+..|-.+.....+.++..... +.+.....+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~~~~~~~~e~ 92 (302)
T 2y3a_B 13 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEM 92 (302)
T ss_dssp --------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC------CTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 89 RKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQ 143 (262)
Q Consensus 89 ~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k~~e~~~~~~~l~~~l~~l~~~ 143 (262)
..+.+-...++..+..|-.-......++...+....+..+.+..+.-.+-.+.+.
T Consensus 93 ~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k~ 147 (302)
T 2y3a_B 93 QRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKI 147 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhhc
No 489
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.33 E-value=12 Score=20.82 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCCC
Q psy16189 239 RQRKCPKCNAAFGAN 253 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~~ 253 (262)
++..|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en3_A 11 KPFQCKECGMNFSWS 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCcccChhhCCH
No 490
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.33 E-value=12 Score=20.96 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2yto_A 11 KPYKCSDCGKAFTR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCEECcccCCccCC
No 491
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.32 E-value=11 Score=20.87 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2emb_A 11 KRYECSKCQATFNL 24 (44)
T ss_dssp SSEECTTTCCEESC
T ss_pred CCeECCCCCCccCC
No 492
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=33.26 E-value=12 Score=20.98 Aligned_cols=14 Identities=21% Similarity=0.778 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..||.|+..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emj_A 11 KPFECAECGKSFSI 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCEECCCCCcccCC
No 493
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=33.06 E-value=24 Score=25.24 Aligned_cols=39 Identities=26% Similarity=0.666 Sum_probs=0.0
Q ss_pred cccccccccc--cceeccccccccHHHHHHHhccCCCCccCCCcccCCCC
Q psy16189 207 TCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254 (262)
Q Consensus 207 ~C~iC~~~~~--~~v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~d 254 (262)
.|..|...+. ..++..-|+.|...| +.|-.|+.+|...+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~C---------F~C~~C~~~L~~g~ 50 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLEC---------FKCAACQKHFSVGD 50 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTT---------CBCTTTCCBCCTTC
T ss_pred cccCCCCeecCCceEEEECCccccccc---------CccccCCCCCCCCC
No 494
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.93 E-value=12 Score=20.87 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytf_A 11 KPFECSECQKAFNT 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCcCCCCCCcccCC
No 495
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.93 E-value=63 Score=17.63 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 86 TAIRKLEEKERYLQTVLTNVEKELHLRNQAM 116 (262)
Q Consensus 86 ~~i~~l~e~e~~l~~~i~~lekel~~~~~~~ 116 (262)
+.+.+|+++-..+......|+.|+..++.-+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
No 496
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.90 E-value=1.7e+02 Score=24.94 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 68 DILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRK 122 (262)
Q Consensus 68 ~~l~~e~~~l~~~~~~~~~~i~~l~e~e~~l~~~i~~lekel~~~~~~~~~~k~k 122 (262)
|.....++.+...+.+....|.........|...+..++..|..+++.+..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.85 E-value=2.8e+02 Score=25.04 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHH----HHH-HH
Q psy16189 49 LMTERIKSNQLHKLAREEKDILHEQVNALKLQIDA---------------------------MHTAIRKL----EEK-ER 96 (262)
Q Consensus 49 l~~e~~ka~q~~~~~~~~k~~l~~e~~~l~~~~~~---------------------------~~~~i~~l----~e~-e~ 96 (262)
+..+.+..+.....+..+.+.+.++...+..++.+ ..+..+.+ .+. -+
T Consensus 35 ~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (484)
T 3lss_A 35 IVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSK 114 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16189 97 YLQTVLTNVEKELHLRNQAMDLN 119 (262)
Q Consensus 97 ~l~~~i~~lekel~~~~~~~~~~ 119 (262)
.+...+..++.++..+...+...
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 498
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.76 E-value=11 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=0.0
Q ss_pred CCCCccCCCcccCC
Q psy16189 239 RQRKCPKCNAAFGA 252 (262)
Q Consensus 239 ~~~~CP~Cr~~~~~ 252 (262)
++..|+.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2eof_A 11 KPYECNECQKAFNT 24 (44)
T ss_dssp CSEECTTTCCEESC
T ss_pred CCeECCCCCcccCC
No 499
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.74 E-value=18 Score=23.94 Aligned_cols=28 Identities=32% Similarity=0.757 Sum_probs=0.0
Q ss_pred ccCccccccccc-----ccceeccccccccHHH
Q psy16189 204 ETLTCPSCKVKR-----KDAVLTKCFHVFCWDC 231 (262)
Q Consensus 204 ~~~~C~iC~~~~-----~~~v~l~CgH~fC~~C 231 (262)
....|..|...+ +..+.-.|-|..|..|
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccc
No 500
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=32.61 E-value=13 Score=26.24 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=0.0
Q ss_pred cccCccccccccccc---ceeccccccccHHHHHHHhcc---CCCCccCCC
Q psy16189 203 KETLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYET---RQRKCPKCN 247 (262)
Q Consensus 203 ~~~~~C~iC~~~~~~---~v~l~CgH~fC~~Ci~~~~~~---~~~~CP~Cr 247 (262)
.....|.+|...-.. .....|+..|-..|+...... ....||.|.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Done!