RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16189
(262 letters)
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 64.4 bits (157), Expect = 4e-14
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 204 ETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256
++CP C + V T+C HVFC CLR CP C YH
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRKKINHKRYH 60
Query: 257 RLYL 260
+Y+
Sbjct: 61 PIYI 64
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 63.3 bits (154), Expect = 1e-13
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 204 ETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 256
T++CP C + V T+C HVFC CLR CP C YH
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRKKINHKRYH 67
Query: 257 RLYL 260
+Y+
Sbjct: 68 PIYI 71
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 57.5 bits (139), Expect = 2e-11
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
C C+ ++ V+TKC H FC C + +C C+
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQ 57
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 55.6 bits (134), Expect = 1e-10
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253
C C V C HVFC+ C++ ++C C +
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPED 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 59.4 bits (143), Expect = 2e-10
Identities = 14/63 (22%), Positives = 20/63 (31%)
Query: 192 DEVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251
E C C KD + C H+ C CL + E+ + CP C
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
Query: 252 AND 254
+
Sbjct: 379 GTE 381
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 53.3 bits (128), Expect = 6e-10
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
+ C C + T+C H FC C+ + KC C + +
Sbjct: 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 50.9 bits (122), Expect = 4e-09
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 188 AGTLDEVMMEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKC 246
+ + E+ Y + C CK DA +T+C H FC C+ R+ +CPKC
Sbjct: 1 GSSGSSGNLSELTPY---ILCSICKGYLIDATTITECLHTFCKSCIV-RHFYYSNRCPKC 56
Query: 247 NA 248
N
Sbjct: 57 NI 58
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 51.1 bits (122), Expect = 1e-08
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 146 EAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKET 205
E + +++S + + K E +A L+ + +G+ ++ + ++ E T
Sbjct: 3 EPYSLTAQQSSLIREDKSNAKLWNEVLASLKDRP-------ASGSPFQLFLSKVEE---T 52
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253
C C+ + T C H C DCL + + CP C G +
Sbjct: 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 50.3 bits (120), Expect = 2e-08
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 186 EQAGTLDEVMMEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCP 244
+DE +E I E C C K +DA C + C+ C+R ++ +CP
Sbjct: 6 HHHSHMDEQSVESI---AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCP 62
Query: 245 KCNAAFGAND 254
C A +
Sbjct: 63 HCRAPLQLRE 72
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 48.5 bits (116), Expect = 2e-08
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 200 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
E + L C C+ + K L C H C CL E +CP C
Sbjct: 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPIC 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 49.8 bits (119), Expect = 2e-08
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 196 MEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
+ ++ + L C C A+ + +C H +C C+R ++ + + +CP C
Sbjct: 13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIR-KFLSYKTQCPTCCVTV 67
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 53.3 bits (128), Expect = 3e-08
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 4/198 (2%)
Query: 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDI 69
EEEA +++ + ++ + +D N KL ER +
Sbjct: 966 EEEAARQKLQ---LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 70 LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS 129
E+ L + + I +LE + + + +EK + E
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK-IEQA 188
A+LK L K +L+ A + ++TS K + L+ I+ L+ E K +A
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Query: 189 GTLDEVMMEEIREYKETL 206
+ EE+ K L
Sbjct: 1143 EKQKRDLSEELEALKTEL 1160
Score = 50.2 bits (120), Expect = 3e-07
Identities = 32/185 (17%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 26 EDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMH 85
+ +E RL + +E ++ ++ + + + + EK + +Q+ L+ Q++
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 86 TAIRKLEEKERYLQTVLTNVEKEL-HLRNQAMDLNKRKAI---ESAQSAADLKLHLEKYH 141
A +KL+ ++ + +E ++ + +Q L K + + + +L EK
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 142 AQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIRE 201
L + + S LE K ++ ++E+ +++RK E + + +I E
Sbjct: 1029 -NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE--GESSDLHEQIAELQAQIAE 1085
Query: 202 YKETL 206
K L
Sbjct: 1086 LKAQL 1090
Score = 48.7 bits (116), Expect = 9e-07
Identities = 31/206 (15%), Positives = 84/206 (40%), Gaps = 11/206 (5%)
Query: 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 68
E E +L+EME E+ +E++ +L + ++ L + + + + EK
Sbjct: 923 QELEEILHEME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 69 ILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQ 128
++ ++ I M KL ++ + L+ ++++ L + + +
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 129 SAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM------ 182
++L++ L+K +E +++ + + LQ +IA+L+ + +
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 183 --KKIEQAGTLDEVMMEEIREYKETL 206
++E + +++IRE + +
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHI 1125
Score = 39.8 bits (93), Expect = 7e-04
Identities = 22/166 (13%), Positives = 66/166 (39%), Gaps = 7/166 (4%)
Query: 46 NFKLMTERIKSNQLHKLAREEKDI--LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLT 103
++ M L K+ R+E+++ E++ K + +++LE+K L
Sbjct: 836 HWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN 895
Query: 104 NVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVV---TEKTSSLEA 160
++++L + + + A +L+ L + A+++E ++ + ++
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
Query: 161 EAYKTKRLQEEIAQLRRKTERMKK--IEQAGTLDEVMMEEIREYKE 204
+ + EE R+K + K + +++ ++ + +
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 39.8 bits (93), Expect = 7e-04
Identities = 30/198 (15%), Positives = 73/198 (36%), Gaps = 15/198 (7%)
Query: 17 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNA 76
EM+ + + +E+ + +L+E + + +L E+ N L + + E ++ E
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEK---NLLQEKLQAETELYAEA--- 911
Query: 77 LKLQIDAMHTAIRKLEEKERYLQTVLTNVEKEL-HLRNQAMDLN------KRKAIESAQS 129
+ + ++LEE ++ + E+ L+ + + + + E +
Sbjct: 912 -EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK-TERMKKIEQA 188
L+L ++K+ + + + K L+E ++ L E +K +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 189 GTLDEVMMEEIREYKETL 206
L I E + L
Sbjct: 1031 TKLKNKHESMISELEVRL 1048
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/152 (14%), Positives = 70/152 (46%), Gaps = 5/152 (3%)
Query: 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR-EKDDANFKLMTERIKSNQLHKLAREEK 67
N+ E++++E+EV + E +++ ++ ++L E D + ++ + + +L + +
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL----KAQL 1090
Query: 68 DILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESA 127
E++ A +++ + +K R L++ +++++++L A + +++ + +
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
Query: 128 QSAADLKLHLEKYHAQLKEAQQVVTEKTSSLE 159
+ LK LE Q++ +
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 37.9 bits (88), Expect = 0.003
Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 20/178 (11%)
Query: 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDI 69
EEE + + ++ + E + K R + ++ + E
Sbjct: 1022 EEEEKAKNLT----------KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Query: 70 LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS 129
LHEQ+ L+ QI + + K EE+ LQ L +E E +N A +K E
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEE---LQAALARLEDETSQKNNA----LKKIRELESH 1124
Query: 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQ 187
+DL+ LE A +A++ + + LEA L++ + + E +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEA---LKTELEDTLDTTATQQELRGSDYK 1179
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 49.6 bits (118), Expect = 8e-08
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 139 KYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER-MKKIEQAGTLDEVMME 197
+H + V S+ + E QL + + +++ Q L + ++
Sbjct: 4 SHHHHHHSSGLVPRGSPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLS 63
Query: 198 EIREYK-------ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
+ E ++ C C+ V T+CFH C DCL+ ++ + CP C
Sbjct: 64 HLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123
Query: 251 GAND 254
G N
Sbjct: 124 GQNY 127
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 47.4 bits (113), Expect = 9e-08
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 197 EEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTR-YETRQRKCPKCNAAFGAND 254
E + L C CK DAV+ C + +C +C+RT E+ + CP C+ + D
Sbjct: 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 47.0 bits (112), Expect = 1e-07
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKCNAAF 250
+E + CP C + V C H FC C+ ET KCP C +
Sbjct: 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 48.9 bits (116), Expect = 1e-07
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 137 LEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMM 196
+++ A ++E + + + ++A+ + ++ +EE ++ + +K E +++V+
Sbjct: 8 FQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEE-----KEKMQAQKEEVLSHMNDVLE 62
Query: 197 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255
E L C C +AV C H FC C+ + R+ +CP C + Y
Sbjct: 63 NE-------LQCIICSEYFIEAVTLNCAHSFCSYCIN-EWMKRKIECPICRKDIKSKTY 113
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 46.5 bits (111), Expect = 1e-07
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 246
+ +C C K+ V+ +C H FC C+ +E +R CP C
Sbjct: 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 46.5 bits (110), Expect = 1e-07
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 204 ETLTCPSCKVKR-----KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 255
+ CP CK + ++ C H C C+ + CP+C +++
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 48.6 bits (115), Expect = 2e-07
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
+ + C +C+ + +C H +C CL + + + C C +
Sbjct: 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 47.1 bits (112), Expect = 2e-07
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 195 MMEEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTR-YETRQRKCPKCNAAF 250
+ E + L C CK DAV+ C + +C +C+RT E+ + CP C+
Sbjct: 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 46.2 bits (110), Expect = 2e-07
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 246
+E + CP C + V C H FC C+ ET KCP C
Sbjct: 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 46.4 bits (110), Expect = 2e-07
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 204 ETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
T++CP C + V T+C HVFC CLR CP C
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRK 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 48.8 bits (116), Expect = 2e-07
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 180 ERMKKIEQAGTLDEVMMEEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYET 238
E + ++A T ++ R L CP C K+ + TK C H FC DC+ T +
Sbjct: 29 ELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS 88
Query: 239 RQRKCPKCNAAF 250
++CP C
Sbjct: 89 GNKECPTCRKKL 100
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 46.6 bits (111), Expect = 2e-07
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK-----CPKCNAAF 250
KE +TCP C K+ V C H FC C+ YE+ + CP C +
Sbjct: 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 47.1 bits (112), Expect = 3e-07
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257
+ CP C + ++AV T C H FC C+ KCP N N
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 46.4 bits (110), Expect = 4e-07
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
+ ++++C C+ D V T C H+FC C+ + CP C D
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 5e-07
Identities = 33/243 (13%), Positives = 81/243 (33%), Gaps = 49/243 (20%)
Query: 57 NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQT--VLTNVEKELHLRNQ 114
+L + + +KL+I ++ +R+L + + Y VL NV+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-- 260
Query: 115 AMDLN--------KRKAIESAQSAADLKLHLEKYHAQLKEAQ------QVVTEKTSSLEA 160
A +L+ ++ + +A + L+ + L + + + + L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 161 EAYKT---------KRLQEEIAQLRR----KTERMKKIEQAGTLDEVMMEEIREYKETLT 207
E T + +++ +A +++ I ++ +L+ + E R+ + L+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLS 379
Query: 208 CPSCKVKRKDAVLTKCFHVFC--WDCLRTRYETRQ--RKCPKCNAAFGAND-----YHRL 258
V A + + W + + + K K + +
Sbjct: 380 -----VFPPSAHIPT--ILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 259 YLE 261
YLE
Sbjct: 432 YLE 434
Score = 37.1 bits (85), Expect = 0.005
Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 41/186 (22%)
Query: 67 KDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVE-----KELHLRNQA---MDL 118
KDIL +A D + +++L+ E +
Sbjct: 19 KDILSVFEDAFVDNFDCKDV--------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 119 NKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKR--LQEEIAQLR 176
K E Q ++ L + L + + S+ Y +R L +
Sbjct: 71 LLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 177 RKT-ERMKKIEQAGTLDEVMMEEIREY-----------KETLTCPSCKVKRKDAVLTK-C 223
+ R++ + L + ++E K + C V K
Sbjct: 128 KYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKMD 181
Query: 224 FHVFCW 229
F +F W
Sbjct: 182 FKIF-W 186
Score = 33.3 bits (75), Expect = 0.094
Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 104/294 (35%)
Query: 25 FE--DMQEQNSRLLQQLRE--KDDANFKLMTERIKSNQLHKLAREE-KDILHE------- 72
FE + Q Q +L + D+ + K + + KS L++EE I+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----ILSKEEIDHIIMSKDAVSGT 64
Query: 73 ----------QVNALK------LQIDA--MHTAIRKLEEKERYLQTVLTNVEKE-LHLRN 113
Q ++ L+I+ + + I+ E+++ + T + +++ L+ N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDN 123
Query: 114 QAMD----------LNKRKAIESAQSAADLKLH----LEKYHAQLKEAQQVVTEKTSSLE 159
Q L R+A+ + A ++ + K + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----------------TWVA 167
Query: 160 AEAYKTKRLQEE---------IAQLRRKTERMKKIEQ--------------AGTLDEVMM 196
+ + ++Q + + ++ +++ + ++ +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 197 EEIREYKETLTC----PSC-----KVKRKDAVLTKCFHVFCWDCLRTRYETRQR 241
I+ L +C V+ A F++ C + TR +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSC----KILLTTRFK 275
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 46.7 bits (110), Expect = 6e-07
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 214 KRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 260
+ V T+C HVFC CLR + CP C YH +Y+
Sbjct: 88 NGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIYI 133
Score = 42.8 bits (100), Expect = 1e-05
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 203 KETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
T++CP C + V T+C HVFC CLR + CP C
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 45.8 bits (108), Expect = 2e-06
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 257
+ CP C + ++AV T C H FC C+ KCP N N
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 43.4 bits (102), Expect = 6e-06
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 203 KETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
++ L C C ++ V L C H+FC +C+ T CP C
Sbjct: 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPA 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 43.4 bits (102), Expect = 6e-06
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 251
C C + V C H C C ++ E CP C
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 42.3 bits (100), Expect = 7e-06
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK-----CPKCNAAF 250
KE +TCP C + C H FC CL ++ CP C ++
Sbjct: 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 43.2 bits (102), Expect = 8e-06
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 192 DEVMMEE--IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKCN 247
V + I ++ L CP C K+ V TKC H+FC C+ ++ +CP C
Sbjct: 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 248 AAF 250
Sbjct: 66 NDI 68
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 41.6 bits (98), Expect = 9e-06
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 207 TCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
CP C + ++ C H FC+ C+ + CP C
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPV 50
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 41.1 bits (97), Expect = 2e-05
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK------CPKCNAAF 250
+E +TCP C + + C H C C+ + CP C ++
Sbjct: 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 41.7 bits (98), Expect = 2e-05
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 191 LDEVMMEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAA 249
+ +I E L C C DA + +C H FC C+ ET + CP C+
Sbjct: 1 MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQ 59
Query: 250 FGANDYHR 257
Sbjct: 60 VHKTRPLL 67
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 42.1 bits (98), Expect = 2e-05
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 196 MEEIREYKETLTCPSCKVKRKDAV--LTKCFHVFCWDCLRTRYETRQRK----CPKCNAA 249
ME++ K V LTKC H F CL Y + CP C
Sbjct: 32 MEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91
Query: 250 FG 251
+G
Sbjct: 92 YG 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.9 bits (104), Expect = 3e-05
Identities = 24/169 (14%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 26 EDMQEQNSRLLQQLREKDDANFKLMTERIKS-NQLHKLAREEKDILHEQVNALKLQIDAM 84
E ++ + L ++ + + +I N+ +K E+ + L + ++ +
Sbjct: 917 ERYKKLHIGLENKIMQ--------LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 85 HTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQL 144
+R EE+ + + ++++E+ + + + + + A K E+ ++L
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028
Query: 145 KEAQQVVTEKTSSLEAEAY---------KTKRLQEEIAQLRRKTERMKK 184
KE ++ + L + K+L EE QL +
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 41.2 bits (97), Expect = 2e-04
Identities = 26/179 (14%), Positives = 70/179 (39%), Gaps = 16/179 (8%)
Query: 29 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAI 88
+ LQ + A +L +I++ + + ++ L ++ L+ +ID +
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERY-KKLHIGLENKIMQLQRKIDEQNKEY 944
Query: 89 RKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQ 148
+ L EK L+ + ++L R +E + + + + ++ Q
Sbjct: 945 KSLLEKMNNLEITYSTETEKL-----------RSDVERLRMSEE---EAKNATNRVLSLQ 990
Query: 149 QVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM-KKIEQAGTLDEVMMEEIREYKETL 206
+ + + L + K ++E + + +TE++ ++++ TL + EE+
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Score = 40.1 bits (94), Expect = 5e-04
Identities = 24/197 (12%), Positives = 66/197 (33%), Gaps = 8/197 (4%)
Query: 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDI 69
+ + + + QA ++ LRE + + R K I
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREH--KSIIIQKHVRGWLARVHYHRTLKAI 890
Query: 70 LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS 129
++ Q ++ ++ + + +E ++ + +D ++ +
Sbjct: 891 VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950
Query: 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAG 189
+L++ +L+ + + + + LQEEIA+LR++ + + ++
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT- 1009
Query: 190 TLDEVMMEEIREYKETL 206
+ E +YK
Sbjct: 1010 -----IEEWADKYKHET 1021
Score = 34.3 bits (79), Expect = 0.037
Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 11/146 (7%)
Query: 69 ILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD-----LNKRKA 123
++ ++ ++ A+ +R + +Y + + + + KA
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 124 IESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSS--LEAEAYK-TKRLQEEIAQLRRKTE 180
I Q + + EA+ V K LE + + +++ E+ + + E
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 181 RMKKIEQAGTLDEVMMEEIREYKETL 206
+M +E E++R E L
Sbjct: 950 KMNNLEITY---STETEKLRSDVERL 972
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 40.2 bits (93), Expect = 7e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 208 CPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
C C + K + C HVFC+DC + + CP C+
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSD 45
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 37.8 bits (88), Expect = 4e-04
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 203 KETLTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 246
+E L CP C ++ L C H C CL + +CP C
Sbjct: 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 36.8 bits (85), Expect = 5e-04
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 200 REYKETL-TCPSCK-VKRKDAVLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAF 250
Y + + C C + + C C+ +++ +CP CN +
Sbjct: 9 ETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 37.1 bits (86), Expect = 5e-04
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 193 EVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKCNAAFG 251
V+ E++R+ KE + C C + ++ C H C C + + CP C +
Sbjct: 6 RVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAA-----QLQSCPVCRSRV- 59
Query: 252 ANDYHRLYL 260
+YL
Sbjct: 60 -EHVQHVYL 67
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 39.9 bits (93), Expect = 6e-04
Identities = 23/168 (13%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 15 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQV 74
L ++ T +D+Q ++ ++L K++ + + + ++ Q ++ +++ +
Sbjct: 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKD-----ARE 1980
Query: 75 NALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAAD-L 133
++L + A++K++ +L R+ +E ++AA+ L
Sbjct: 1981 LQVQLDVRNKEIAVQKVK------------AYADLEKAEPTGP--LREEVEQLENAANEL 2026
Query: 134 KLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181
KL ++ A + ++ + +T++++ E ++++ K +R
Sbjct: 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 36.7 bits (85), Expect = 6e-04
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 197 EEIREYKETLTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKCNAAFGANDY 255
E++R +E C C + V C H+ C C KCP C
Sbjct: 17 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC-----AEAVDKCPMCYTVI--TFK 69
Query: 256 HRLYL 260
++++
Sbjct: 70 QKIFM 74
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 39.2 bits (90), Expect = 7e-04
Identities = 29/231 (12%), Positives = 72/231 (31%), Gaps = 14/231 (6%)
Query: 28 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTA 87
+ ++ + L +D +N + ++ + + I + +
Sbjct: 14 LHPKSGKYFHNLHARDLSN-IYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKL 72
Query: 88 IRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEA 147
+ E + + +++K + A + ++ L + + +
Sbjct: 73 LSTYESESNSFDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTP 132
Query: 148 QQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKETLT 207
+ + K L+ T + ++ D++ +E K LT
Sbjct: 133 EPATMVNNTDTL------KILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGG---KIELT 183
Query: 208 CPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETR-QRKCPK--CNAAFGAND 254
CP + ++ KC HVF D ++ + R CP+ C+ D
Sbjct: 184 CPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 9/112 (8%)
Query: 152 TEKTSSLEAEAYKTKRLQEEIAQLRRKTER-----MKKIEQAGTLDEVMMEEIREYKETL 206
K S+ + + +L+ K R I++ T D + +L
Sbjct: 157 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSL 216
Query: 207 TCPSCKVKRKDAVLTK-CFHVFCWDC---LRTRYETRQRKCPKCNAAFGAND 254
CP K++ C H+ C+D L+ + CP C+
Sbjct: 217 MCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 197 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
+++ + C C R D +L C H FC C+ ++ R R CP C
Sbjct: 7 GRVKQLTDEEECCICMDGRADLILP-CAHSFCQKCID-KWSDRHRNCPIC 54
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 34.2 bits (79), Expect = 0.003
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 208 CPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
CP C R A + C H+ C +CP C+
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYE-EMLKEGYRCPLCSG 51
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 34.1 bits (78), Expect = 0.005
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 207 TCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
C C+ + K V +C H F C+ + R CP C +
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR-CPLCQQDW 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 34.4 bits (78), Expect = 0.006
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 203 KETLTCPSCKVKRKDAVLTKCF----HVFCWDCLRTRYETRQR----KCPKC 246
L C C + +D +C H FC+ C R + + CP
Sbjct: 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 34.1 bits (78), Expect = 0.007
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 204 ETLTCPSC---KVKRKDAVLTKCFHVFCWDCLRTRYET-------RQRKCPKCN 247
+ C C + + +C +FC CL+ E CP
Sbjct: 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 33.5 bits (76), Expect = 0.010
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 203 KETLTCPSCK----VKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
++ + CP C + + C + C C CP C + +
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 32.8 bits (75), Expect = 0.010
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 203 KETLTCPSCKVKRKDAVLTKCFH-VFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLE 261
+ + C C+ + VL C H C C++ ++CP C + L
Sbjct: 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK-----YFQQCPMCRQFV--QESFALSGP 65
Query: 262 S 262
S
Sbjct: 66 S 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.011
Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 65/217 (29%)
Query: 13 ALLN---EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDI 69
+L+N + V+G + + L LR K A L RI E K
Sbjct: 369 SLVNGAKNLVVSGPP-QSLY----GLNLTLR-KAKAPSGLDQSRIP-------FSERKLK 415
Query: 70 LHEQVNALKLQIDA-MHTAIRKLEEKERYLQTVLTNVEKELHLRN---QAMDLNKRKAIE 125
+ L + + H+ L + K+L N A D+ + +
Sbjct: 416 FSNRF----LPVASPFHSH---------LLVPASDLINKDLVKNNVSFNAKDI--QIPVY 460
Query: 126 SAQSAADLKLHLEKYHAQLKE--AQQVVT-----EKTSSLEAEAYKTKRL------QEEI 172
+DL+ + E ++ E T+ +A T L +
Sbjct: 461 DTFDGSDLR----VLSGSISERIVDCIIRLPVKWETTTQFKA----THILDFGPGGASGL 512
Query: 173 AQLRRKTERMK-----KIEQAGTLDEVMMEEIREYKE 204
L T R K ++ AGTLD ++ +K+
Sbjct: 513 GVL---THRNKDGTGVRVIVAGTLDINPDDDY-GFKQ 545
Score = 34.6 bits (79), Expect = 0.034
Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 96/267 (35%)
Query: 11 EEALLNEMEVTGQAFEDMQEQNSRLL---------QQLREKDDANFKLMT------ERIK 55
A + + G + D+ N L +++RE N+ M ++K
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYSAMIFETIVDGKLK 1702
Query: 56 SNQLHKLARE---------EKDILHEQVNALKLQ--IDAMHTAI-RKLEEK--------- 94
+ ++ K E EK +L Q + M A L+ K
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFT---QPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 95 ------ERY--LQT---VLTNVE---KELHLR----------------NQAMDLNKRKAI 124
E Y L + V++ +E + + R N M +
Sbjct: 1760 AGHSLGE-YAALASLADVMS-IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 125 ESAQSAADLKLHLEKYHAQ---LKEA-------QQVVTEKTSSLEAEAYKTKRLQEEIAQ 174
++ S L+ +E+ + L E QQ V ++ + A L
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV----AAGDLRA-----LDTVTNV 1868
Query: 175 LRRKTERMKKIEQAGTLDEVMMEEIRE 201
L +++KI+ + +EE+
Sbjct: 1869 L--NFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 34.3 bits (78), Expect = 0.038
Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 55/183 (30%)
Query: 83 AMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHA 142
A +L +E++ + L + A D + + A+L Y +
Sbjct: 25 ASFFIASQL--QEQFNKI-LPEPTEGF-----AAD-------DEPTTPAELVGKFLGYVS 69
Query: 143 QLKEAQQVVTEKTSSLEA--EAYKTKRLQ-EEI----AQLRRKTERMKKIEQAGTLDEVM 195
L E +V + L ++ L+ +I A+L ++ + + + L
Sbjct: 70 SLVEPSKV-GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND--TTLVKTKEL---- 122
Query: 196 MEEIREYKETLTC---PSCK---------VKRKDAVLTKCFHVF--------CWDCLRTR 235
I+ Y P K V +A + +F ++ LR
Sbjct: 123 ---IKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGNTDDYFEELRDL 176
Query: 236 YET 238
Y+T
Sbjct: 177 YQT 179
Score = 32.7 bits (74), Expect = 0.14
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 54/175 (30%)
Query: 87 AIRKLEEKERYLQTVL--TN----VEKELH--LRNQAMDLNKRKAIES--AQSAADLKLH 136
+I L +++ +Q + TN K++ L N A + + S QS L L
Sbjct: 340 SISNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGA-----KNLVVSGPPQSLYGLNLT 392
Query: 137 LEKYHAQLKEAQQVV--TEKT---------------SSLEAEAYKTKRLQEEIAQLRRKT 179
L K A Q + +E+ S L A + + ++ L +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA--SDLINKD---LVKNN 447
Query: 180 ERMK----KIEQAGTLDEVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWD 230
+I T D ++R +++ D ++ W+
Sbjct: 448 VSFNAKDIQIPVYDTFDG---SDLRVLSGSISERIV-----DCIIRLPVK---WE 491
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.6 bits (79), Expect = 0.017
Identities = 15/62 (24%), Positives = 17/62 (27%), Gaps = 24/62 (38%)
Query: 195 MM--EEIREYKE--------TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCP 244
MM E I + LTCP CKV V R+ C
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIV--------------ERFSEGDVVCA 46
Query: 245 KC 246
C
Sbjct: 47 LC 48
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 35.0 bits (81), Expect = 0.025
Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 17/172 (9%)
Query: 51 TERIKSNQLHKLAREEKDILHEQVNALKLQ-----------IDAMHTAIRKLEEKERYLQ 99
E ++S ++ + + +L+ + + +
Sbjct: 790 IESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEID 849
Query: 100 TVLTNVEKELH---LRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTS 156
+ + +EK + ++K Q + LE + A K E
Sbjct: 850 STWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENW-ATTKSVYLGSNETGD 908
Query: 157 SLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGT--LDEVMMEEIREYKETL 206
S+ A K K L+ + + + + L E+ + E E
Sbjct: 909 SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 960
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 30.1 bits (68), Expect = 0.100
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 207 TCPSCKVK-RKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247
CP C V KD C FCW CL +E CN
Sbjct: 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP-WEPHGSAWYNCN 55
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 32.0 bits (72), Expect = 0.16
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 144 LKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYK 203
L Q+ +K EAE K +Q + + + + E+ Y
Sbjct: 122 LNLVDQLKGKKMRKKEAEQVLQKFVQNKW----LIEKEGEFTLHGRAILEMEQYIRETYP 177
Query: 204 ETL-TCPSCK-VKRKDAVLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAF 250
+ + C C + + C C+ +++ +CP CN +
Sbjct: 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 28.7 bits (64), Expect = 0.33
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 196 MEEI--REYKETLTCPSCKVKRKDAVL---TKCFHVFCWDC 231
+EI EY C C+ + KD + C +VFC DC
Sbjct: 4 FQEIPLEEYNGERFCYGCQGELKDQHVYVCAVCQNVFCVDC 44
Score = 25.6 bits (56), Expect = 4.1
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 227 FCWDCLRTRYETRQRKCPKCNAAF 250
FC+ C + C C F
Sbjct: 17 FCYGCQGELKDQHVYVCAVCQNVF 40
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 29.9 bits (67), Expect = 0.34
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 203 KETLTCPSCKVKRKDAVLTKC------FHVFCWDCLRTRYETRQRKCPKC 246
E C +CK +D+ + C +H FC + T KC C
Sbjct: 52 PECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure,
electron transport, heme, iron, metal-binding,
periplasm, transport; HET: HEM; 1.72A {Escherichia coli}
PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A*
1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A*
3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Length = 106
Score = 29.0 bits (64), Expect = 0.50
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 122 KAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181
K IE A +AA +K L K A +AQ+ K ++ + + L +
Sbjct: 15 KVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMHDFRHGFDILVGQIHD 74
Query: 182 MKKIEQAGTLDE 193
+ G + E
Sbjct: 75 ALHLANEGKVKE 86
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 30.3 bits (67), Expect = 0.66
Identities = 25/213 (11%), Positives = 72/213 (33%), Gaps = 7/213 (3%)
Query: 1 MSLGQVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQ---LREKDDANFKLMTERIKSN 57
S V ++ L ++E F ++ S ++
Sbjct: 371 SSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKP 430
Query: 58 QLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMD 117
++L ++ L ++ + ++ + + + + ++ L + + ++
Sbjct: 431 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIE 490
Query: 118 LNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEK----TSSLEAEAYKTKRLQEEIA 173
+ + KA + SA L K +++ ++ E T +E + + + QE
Sbjct: 491 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 550
Query: 174 QLRRKTERMKKIEQAGTLDEVMMEEIREYKETL 206
L+ + + E +M EI++ + +
Sbjct: 551 ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
Score = 28.0 bits (61), Expect = 3.4
Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 3/165 (1%)
Query: 23 QAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDILHEQVNALKLQID 82
+Q+L++ ++ + I++ ++ + + K+ + + + +
Sbjct: 424 AGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLT 483
Query: 83 AMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHA 142
I K Q + + Q M+ +R E + + +
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 543
Query: 143 QLKE---AQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184
+ +E A ++ ++ E +++ ++ EI L+ K R K
Sbjct: 544 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.0 bits (68), Expect = 0.69
Identities = 23/170 (13%), Positives = 57/170 (33%), Gaps = 17/170 (10%)
Query: 9 NEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 68
+ ++ V+ ++D ++ K+ F+ E+I + +L+R ++
Sbjct: 115 GDTSYKIDGKTVS---YKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEE 171
Query: 69 ILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQ 128
+ K + + + I KL + + EL +
Sbjct: 172 V--SGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGEL-----------KTYKSPGL 218
Query: 129 SAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178
+Y + + +V+ +T L+AE K +I + R++
Sbjct: 219 EVLFQGPRGSRY-DEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKE 267
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.87
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 166 KRLQEEIAQLRR-KTERMKKIEQAGTLDEVMMEEIRE 201
RL +E +R+ + E+ K++++ +VM +E RE
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE 114
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.1 bits (64), Expect = 1.3
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 132 DLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQ 187
DL+ + H + ++++ + K + L E+ A+LRR E + +++
Sbjct: 286 DLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQA 341
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 27.0 bits (60), Expect = 1.6
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 203 KETLTCPSCK--VKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKC 246
L CP CK ++V C H+F C+ E CP C
Sbjct: 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVC 58
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 29.0 bits (66), Expect = 1.7
Identities = 13/102 (12%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 61 KLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNK 120
L RE+ D + E++ ++ ++ + +L+++ R + +E RN+ +K
Sbjct: 5 NLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREII---KRLEALRSERNKL---SK 58
Query: 121 R--KAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEA 160
K + +++ +++ ++ ++ + + L+
Sbjct: 59 EIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 28.5 bits (63), Expect = 2.1
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 5/138 (3%)
Query: 57 NQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAM 116
+LH E + L + L+ + + E L ++ ++ L
Sbjct: 103 GKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGK 162
Query: 117 DLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLR 176
+ +E DL + Q + + E + RL + + +R
Sbjct: 163 VPQRAGEVE-----RDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIR 217
Query: 177 RKTERMKKIEQAGTLDEV 194
+ K A +V
Sbjct: 218 TEYNLRLKAGVAAPATQV 235
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 28.6 bits (64), Expect = 2.2
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 70 LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELH 110
+ E++ + I ++IR L+E + N+++++
Sbjct: 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA 42
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.55.3.1
Length = 230
Score = 28.1 bits (63), Expect = 2.5
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 52 ERIKSNQLHKLAR---EEKDILHEQVNALKLQIDAMHTAIRKLEEK 94
+ +++ + EE + L +N ++I+A + L EK
Sbjct: 54 KLLENLGYVEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK 99
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 28.6 bits (63), Expect = 2.5
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 1/126 (0%)
Query: 75 NALKLQIDAMHTAIRKLEEKERY-LQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADL 133
N + + + E+ + L + +++ + + L
Sbjct: 90 NIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDML 149
Query: 134 KLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDE 193
+EKY K+ ++ +++E +LR + +
Sbjct: 150 VNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQD 209
Query: 194 VMMEEI 199
VMMEEI
Sbjct: 210 VMMEEI 215
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure,
structural genomics, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: a.4.1.19
Length = 97
Score = 27.0 bits (60), Expect = 2.6
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 127 AQSAADLKLH---LEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMK 183
Q A DL ++ L+ + + V S+ +EA + ++L++E A R +T
Sbjct: 27 QQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPA 86
Query: 184 K 184
+
Sbjct: 87 E 87
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 26.9 bits (60), Expect = 2.8
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 197 EEIREYKETLTCPSCK---VKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
E+ + + CP C VK A C H F C+ + CP C
Sbjct: 32 EDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVC 83
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 48 KLMTERIKSNQLHKLAREEKDI---------LHEQVNALKLQIDAMHTAIRKLE 92
+ +T+++ +L +AR+E D L EQ+ + M T +R +
Sbjct: 100 RTVTDQV--GRLTAVARDEGDFLGEQFMQWFLQEQIEE----VALMATLVRVAD 147
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 25.9 bits (57), Expect = 3.6
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 197 EEIREYKETLTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
+++E C C K + + + C H F CL E R + CP CN
Sbjct: 7 GKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVR-KVCPLCNM 60
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.8 bits (61), Expect = 3.8
Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 3/129 (2%)
Query: 59 LHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDL 118
+ L + +E KL+ + E L+ + ++
Sbjct: 283 MEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEM 342
Query: 119 NKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRK 178
+ + A+LK ++ H + +++ ++ LE K K L +E+ +++
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLED---KKKSLDDEVNAFKQR 399
Query: 179 TERMKKIEQ 187
+ ++
Sbjct: 400 KTAAELLQS 408
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 27.0 bits (60), Expect = 5.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 12/42 (28%)
Query: 48 KLMTERIKSNQLHKLAREEKDI----------LHEQVNALKL 79
KL E++ LH +A + D+ L EQV A+K
Sbjct: 141 KLTNEKL--LNLHSVATKNGDVQLADFVETEYLGEQVEAIKR 180
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 27.5 bits (62), Expect = 5.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 193 EVMMEEIREYKETLTCPSCKVKR 215
M + ++ Y + CP C KR
Sbjct: 272 ASMKKRVQGYMISEECPLCHGKR 294
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.5 bits (62), Expect = 5.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 193 EVMMEEIREYKETLTCPSCKVKR-KDAVL 220
E M E + + CP C R K +L
Sbjct: 418 EQMKERYEGFMRDVPCPVCAGTRLKPEIL 446
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 27.5 bits (62), Expect = 5.5
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 193 EVMMEEIREYKETLTCPSCKVKR-KDAVL 220
+ + E++ +Y CP+C+ R K L
Sbjct: 409 DYIREQMEKYMAEQPCPTCQGYRLKKESL 437
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 26.8 bits (60), Expect = 5.8
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 11/41 (26%)
Query: 48 KLMTERIKSNQLHKLAREEKDI---------LHEQVNALKL 79
+ T + L + A D +QVN
Sbjct: 96 QANTRSL--LNLAEAASTCHDFAVMAFLNPFHLQQVNEEDK 134
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 27.6 bits (60), Expect = 5.8
Identities = 24/204 (11%), Positives = 62/204 (30%), Gaps = 14/204 (6%)
Query: 5 QVSGNEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS--NQLHKL 62
S + L E + + + ++ + + D L+ + +
Sbjct: 485 TPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRD-TIVLLCKPEPELNAAIPSA 543
Query: 63 AREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRK 122
+ E VN LK + + ++ E E L++V ++ + + +
Sbjct: 544 NPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEE 603
Query: 123 AIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERM 182
A+ + L++ + L Q +K L + +E +++++
Sbjct: 604 ALSVTE--------LDRVYGGLTTKVQESLKKQEGLLKN---IQVSHQEFSKMKQSNNEA 652
Query: 183 KKIEQAGTLDEVMMEEIREYKETL 206
E+ + E L
Sbjct: 653 NLREEVLKNLATAYDNFVELVANL 676
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 26.5 bits (57), Expect = 6.0
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 5/83 (6%)
Query: 169 QEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKETLTCPSCKVK-----RKDAVLTKC 223
++ + + + K + + + + C C +C
Sbjct: 32 DFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLEC 91
Query: 224 FHVFCWDCLRTRYETRQRKCPKC 246
C C E + C C
Sbjct: 92 SLFVCKSCSHAHPEEQGWLCDPC 114
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 26.5 bits (59), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
Query: 48 KLMTERIKSNQLHKLAREEKDI----------LHEQVNALKL 79
K + + + +LHKLA ++ D L+EQV A+K
Sbjct: 109 KNVNQSL--LELHKLATDKNDPHLCDFIETHYLNEQVKAIKE 148
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 26.4 bits (59), Expect = 6.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 48 KLMTERIKSNQLHKLAREEKDI---------LHEQVNALKL 79
K +++ I +L LA EEKD ++EQV
Sbjct: 95 KFISKSI--YELAALAEEEKDYSTRAFLEWFINEQVEEEAS 133
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 26.4 bits (59), Expect = 7.2
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 48 KLMTERIKSNQLHKLAREEKDI---------LHEQVNALKL 79
+ +T+ I + +LA EEKD + EQV
Sbjct: 109 EFVTQSI--YNILELASEEKDHATVSFLKWFVDEQVEEEDQ 147
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 26.6 bits (58), Expect = 7.3
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 164 KTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEIREYKETLTCPSCK------VKRKD 217
+T+ +E A + + + + +E E + P + KD
Sbjct: 107 ETRTARELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKD 166
Query: 218 AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
V C C C + +Q C +C+ AF
Sbjct: 167 DVNRLCRVCACHLCGGRQDPDKQLMCDECDMAF 199
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 26.4 bits (59), Expect = 7.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 48 KLMTERIKSNQLHKLAREEKDI---------LHEQVNALKL 79
+T+RI ++L ++A +EKD + EQV
Sbjct: 97 VNVTKRI--HELVEMAMQEKDFATYNFLQWYVAEQVEEEAS 135
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 26.6 bits (59), Expect = 7.3
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 12/42 (28%)
Query: 48 KLMTERIKSNQLHKLAREEKDI----------LHEQVNALKL 79
KL +++ L +A + KD L EQV+A+K
Sbjct: 136 KLNFQKL--QALQAIADKHKDAALCDFVEGGLLSEQVDAVKE 175
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 26.7 bits (58), Expect = 8.2
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 10/39 (25%)
Query: 222 KCFHVFCWDCL----------RTRYETRQRKCPKCNAAF 250
KC CL +T E +CP C A
Sbjct: 333 KCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.1 bits (59), Expect = 8.3
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 21/165 (12%)
Query: 10 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDI 69
E+ +E + E+ + L +L A E + + +R E
Sbjct: 680 LEQEARGRLERQKILDQSEAEKARKELLELEAMSMA-----VESTGNAKAEAESRAEAAR 734
Query: 70 LHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQS 129
+ + + L+ ++ A AI E ER + E EL ++L KA + A
Sbjct: 735 IEGEGSVLQAKLKAQALAIETEAELERVKKV----REMELIYARAQLELEVSKAQQLANV 790
Query: 130 AADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQ 174
A K + ++ A +Q ++ Q
Sbjct: 791 EAK------------KFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 823
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 26.1 bits (58), Expect = 8.8
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 136 HLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKK 184
+E+ L+EA ++ + + +R EE R++ ER+K
Sbjct: 8 AVEEMERLLREASSIL--RVEPAKLPK-TVERFFEEWKDQRKEIERLKS 53
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 26.1 bits (58), Expect = 9.0
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 48 KLMTERIKSNQLHKLAREEKDI---------LHEQVNALKLQIDAMHTAIRKLE 92
+ +T++I N+L +A +D + EQ KL + KLE
Sbjct: 104 QKITQQI--NKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKL----FKGILDKLE 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.348
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,806,231
Number of extensions: 224613
Number of successful extensions: 1218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 303
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.1 bits)