RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16189
(262 letters)
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 63.0 bits (153), Expect = 1e-13
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
+ ++++C C+ D V T C H+FC C+ + CP C D
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 50.4 bits (120), Expect = 3e-09
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 193 EVMMEEIREYKET----LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 248
+V E+ Y E C C KD + C H+ C CL + E+ + CP C
Sbjct: 7 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 66
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 46.8 bits (111), Expect = 4e-08
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 204 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
+ L C C+ + K L C H C CL E +CP C A +
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPICQAPW 47
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 45.5 bits (107), Expect = 1e-07
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 204 ETLTCPSC-----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 258
+ CP C + ++ C H C C+ + CP+C +++
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61
Query: 259 YLE 261
E
Sbjct: 62 LFE 64
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 46.6 bits (110), Expect = 1e-07
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 193 EVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKCNAAF 250
E + I ++ L CP C K+ V TKC H+FC C+ ++ +CP C
Sbjct: 9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
Query: 251 GANDYHR 257
Sbjct: 69 TKRSLQE 75
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 38.4 bits (89), Expect = 5e-05
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 208 CPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
CP C + C H FC+ C+ R+ + CP C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCIT-RWIRQNPTCPLCKVPV 50
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 37.4 bits (86), Expect = 1e-04
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 201 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
E+ E CP KD V+ + ++ + + CPK
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 36.6 bits (84), Expect = 1e-04
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 206 LTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 253
+ CP C ++ + C + C C CP C + +
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 37.1 bits (85), Expect = 2e-04
Identities = 4/60 (6%), Positives = 13/60 (21%)
Query: 200 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 259
R+ + L ++ +T + + + P +
Sbjct: 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 61
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 35.2 bits (81), Expect = 4e-04
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 203 KETLTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
+ + C C + + L +C H F +C+ CP C
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLC 49
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 35.8 bits (81), Expect = 0.001
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 175 LRRKTERMKK-IEQAGTLDEVMMEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDC-- 231
+R+ TE +K E+ + + Y + + LTKC H F C
Sbjct: 13 IRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALG-PMVVGRLTKCSHAFHLLCLL 71
Query: 232 --LRTRYETRQRKCPKCNAAFG 251
+ +CP C +G
Sbjct: 72 AMYCNGNKDGSLQCPSCKTIYG 93
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 34.8 bits (79), Expect = 0.002
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 197 EEIREYKETLTCPSCK-VKRKDAVLTKCFHVFCWDCLRTRYETRQRKC 243
+ ++ L C C + R+ L C H+FC +C+ T C
Sbjct: 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC 61
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 32.4 bits (73), Expect = 0.006
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 2/50 (4%)
Query: 206 LTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 254
+ C + VL+ +F L P N +
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYV-KDTGNDPITNEPLSIEE 49
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 33.2 bits (75), Expect = 0.006
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 207 TCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 250
C C+ + A C H F + C+ R+ ++ CP N +
Sbjct: 34 LCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREW 83
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 32.6 bits (74), Expect = 0.041
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 6/153 (3%)
Query: 53 RIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLR 112
R +L K AR+ IL AL ID + IR +T L +L
Sbjct: 335 RRTIFELRK-ARDRAHILEALAVAL-ANIDPIIELIRHAPTPAEA-KTALVANPWQLGNV 391
Query: 113 NQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEI 172
++ A + + Y+ ++AQ ++ + L + ++L +E
Sbjct: 392 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL--EHEKLLDEY 449
Query: 173 AQLRRKTERMKKI-EQAGTLDEVMMEEIREYKE 204
+L + + +I A L EV+ EE+ +E
Sbjct: 450 KELLDQIAELLRILGSADRLMEVIREELELVRE 482
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 30.1 bits (67), Expect = 0.056
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
LTC SCKV K A K ++ T + R++ CP C
Sbjct: 20 LTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSC 60
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 28.7 bits (64), Expect = 0.11
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 203 KETLTCPSCKVK-RKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCN 247
T CP C V KD C FCW CL +E CN
Sbjct: 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG-PWEPHGSAWYNCN 55
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 28.3 bits (62), Expect = 0.17
Identities = 8/53 (15%), Positives = 12/53 (22%), Gaps = 6/53 (11%)
Query: 204 ETLTCPSC-----KVKRKDAVLTKCFHVFCWDCLRTRYETR-QRKCPKCNAAF 250
+ C C + + T CL T C C +
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 27.6 bits (61), Expect = 0.19
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 207 TCPSCKVK----RKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
+C SC + C FC C ++ R C C
Sbjct: 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCS-SQVGNGPRLCLLC 44
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 29.5 bits (66), Expect = 0.26
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 30 EQNSRLLQQLREKDDANFKLMTERIKSNQL----HKLAREEKDILHEQVNALKLQIDAMH 85
EQ ++++ L++ D N+K + + L + R++ L + + AL ++
Sbjct: 24 EQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIV 83
Query: 86 TAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLN 119
+ + L Y+Q LT+ E R Q +
Sbjct: 84 SELAGLLSAMEYVQKTLTDEELADWKRRQQIACI 117
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 27.7 bits (61), Expect = 0.29
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 203 KETLTCPSCKVK----RKDAVLTKCFHVFCWDCLRTR-----YETRQRKCPKC 246
E C +C + +C ++FC +C + R C C
Sbjct: 6 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC 58
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 453
Score = 29.5 bits (66), Expect = 0.42
Identities = 17/110 (15%), Positives = 35/110 (31%)
Query: 90 KLEEKERYLQTVLTNVEKELHLRNQAMDLNKRKAIESAQSAADLKLHLEKYHAQLKEAQQ 149
K+E +L + +++ + + L +EKY K+
Sbjct: 106 KVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFP 165
Query: 150 VVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMKKIEQAGTLDEVMMEEI 199
++ +++E +LR + +VMMEEI
Sbjct: 166 ESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEI 215
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 27.3 bits (60), Expect = 0.58
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
TC CK K V ++ + + R+ +C C
Sbjct: 18 RTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFC 58
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 26.3 bits (58), Expect = 0.73
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 196 MEEIR--EYKETLTCPSCKVKRKDAVL---TKCFHVFCWDCLRTRYETRQRKCPKC 246
+EI EY C C+ + KD + C +VFC DC +++ CP C
Sbjct: 4 FQEIPLEEYNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSL-HSCPGC 58
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 27.4 bits (60), Expect = 0.75
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 203 KETLTCPSC---KVKRKDAVLTKCFHVFCWDCLRTRYETRQR-------KCPKCN 247
+ C C + + +C +FC CL+ E + CP
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 27.0 bits (59), Expect = 0.79
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 208 CPSCKVK----RKDAVLTKCFHVFCWDCLRTR------YETRQRKCPKC 246
C C VK +K+ C FC CL T+Q+ C +C
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQC 60
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 26.5 bits (58), Expect = 0.84
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 11/57 (19%)
Query: 201 EYKETLTCPSCKVK----RKDAVLTKCFHVFCWDCLRTR-------YETRQRKCPKC 246
++ ++ C C K + C VFC + R C C
Sbjct: 1 DWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 57
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 26.5 bits (58), Expect = 0.93
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 11/51 (21%)
Query: 207 TCPSCKVK----RKDAVLTKCFHVFCWDCLRTR-------YETRQRKCPKC 246
C C+V+ + C VFC C + E R C C
Sbjct: 15 VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGC 65
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.7 bits (56), Expect = 1.1
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 208 CPSCKVKRKDAVLTKC------FHVFCWDCLRTRYETRQRKCPKCNAA 249
C C+ K +D L C FH+FC + +CP C A
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 26.2 bits (57), Expect = 1.1
Identities = 9/64 (14%), Positives = 15/64 (23%), Gaps = 7/64 (10%)
Query: 189 GTLDEVMMEEIREYKETLTCPSCKVKRKDAVLTKC------FHVFCWDCLRTRYETRQRK 242
G+ ME + + C + C H C +
Sbjct: 1 GSSGSSGMERGVD-NWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFL 59
Query: 243 CPKC 246
C +C
Sbjct: 60 CFRC 63
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.2 bits (57), Expect = 1.2
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
C CK + ++ + D + + +C C
Sbjct: 17 SACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYC 57
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 25.7 bits (56), Expect = 1.2
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 211 CKVKRKDAVLTKC------FHVFCWDCLRTRYETRQRKCPKC 246
C+V + L C +H+ C + + CP+C
Sbjct: 12 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 26.1 bits (57), Expect = 1.5
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
+C CK K V + + + ++ +C C
Sbjct: 23 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 63
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 25.9 bits (56), Expect = 1.9
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
+C CK K ++ ++ T + R++ C C
Sbjct: 22 WSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQAC 62
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 26.4 bits (58), Expect = 3.0
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 30 EQNSRLLQQLREKDDANFKLMT--ERIKSNQLHKLAREEKDILHEQVNALKLQIDAMHTA 87
E + L+ L+++ D K + E + ++E+ +L + L + +
Sbjct: 22 EHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHK 81
Query: 88 IRKLEEKERYLQTVLTNVEKELHLRNQAMDLN 119
I +L Q L N E R Q
Sbjct: 82 IIELLNVTELTQNALINDELVEWKRRQQSACI 113
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 25.2 bits (55), Expect = 3.3
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 127 AQSAADLKLH---LEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTERMK 183
Q A DL ++ L+ + + V S+ +EA + ++L++E A R +T
Sbjct: 27 QQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPA 86
Query: 184 K 184
+
Sbjct: 87 E 87
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 24.6 bits (53), Expect = 4.1
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 199 IREYKETLTCPSCKVK-RKD-----AVLTKCFHVFCWDCL 232
+ + L C C + A +C FC C
Sbjct: 12 LMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCK 51
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.6 bits (53), Expect = 5.6
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 206 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 246
+C +CK K + + + R++ C C
Sbjct: 22 ASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 62
>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli
[TaxId: 562]}
Length = 123
Score = 25.2 bits (55), Expect = 5.6
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 76 ALKLQIDAMHTAIRKLEEKERYLQTVLTNVEKELHLRNQAMDLNKR 121
A L + + + L +V T + +EL + + + +
Sbjct: 71 ANHLSPSRLQAILGDVCHIREQLMSV-TGINRELLITDLLLRIEHY 115
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 24.8 bits (53), Expect = 5.7
Identities = 6/59 (10%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 190 TLDEVMMEEIREYKETLTCP-SCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 247
L + E + + P + VL + + Q +
Sbjct: 7 GLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRS 65
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 74
Score = 24.3 bits (52), Expect = 5.8
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 204 ETLTCPSCKVKRKDAVLTKCF--HVFCWDCLRTRYETRQRKCPKCNAAF 250
+ TC C +D L + V C +C + + Q+ C C+ F
Sbjct: 28 KLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQ--HAQQTCEDCSTLF 74
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId:
562]}
Length = 106
Score = 24.8 bits (54), Expect = 6.6
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 122 KAIESAQSAADLKLHLEKYHAQLKEAQQVVTEKTSSLEAEAYKTKRLQEEIAQLRRKTER 181
K IE A +AA +K L K A +AQ+ K ++ + K + L + +
Sbjct: 15 KVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDD 74
Query: 182 MKKIEQAGTLDEV--MMEEIREYKET 205
K+ G + E E+++ +
Sbjct: 75 ALKLANEGKVKEAQAAAEQLKTTRNA 100
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis
[TaxId: 1423]}
Length = 118
Score = 24.8 bits (54), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 168 LQEEIAQLRRKTERMKKIEQAGTLDEV 194
L EIA L +E+ +K EQ G ++E+
Sbjct: 27 LNTEIALL---SEKARKAEQHGIINEL 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.127 0.348
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,612
Number of extensions: 42210
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 88
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)