BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16196
(950 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 100/142 (70%), Gaps = 7/142 (4%)
Query: 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722
+ + + N TFTW R+ PPTL I + EG LVA+VG VG GKSSL+SAL E
Sbjct: 2 NSITVRNATFTWARS-------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54
Query: 723 MDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLP 782
MDK+ G V KGS+A+VPQQAWIQN +LR+NI+FG Y VI ACAL PD E+LP
Sbjct: 55 MDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP 114
Query: 783 AGDSTEIGEKGINLSGGQKQRV 804
+GD TEIGEKG+NLSGGQKQRV
Sbjct: 115 SGDRTEIGEKGVNLSGGQKQRV 136
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 658 YSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS 717
Y+ T +V+EN T WE EG P L++IN ++ G L+A+ GS GAGK+SL+
Sbjct: 12 YNLTTTEVVMENVTAFWE-----EGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLM 64
Query: 718 ALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPD 777
+ GE++ G++ G I+F Q +WI T+++NI+FG ++ RY VI AC L D
Sbjct: 65 MIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED 124
Query: 778 FEMLPAGDSTEIGEKGINLSGGQKQRV 804
D+ +GE GI LSGGQ+ R+
Sbjct: 125 ISKFAEKDNIVLGEGGITLSGGQRARI 151
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
T +V+EN T WE EG P L++IN ++ G L+A+ GS GAGK+SL+ + G
Sbjct: 4 TTEVVMENVTAFWE-----EGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 722 EMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEML 781
E++ G++ G I+F Q +WI T+++NI+FG ++ RY VI AC L D
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 782 PAGDSTEIGEKGINLSGGQKQRV 804
D+ +GE GI LSGGQ+ R+
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARI 139
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 8/143 (5%)
Query: 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
T +V+EN T WE EG P L++IN ++ G L+A+ GS GAGK+SL+ + G
Sbjct: 4 TTEVVMENVTAFWE-----EGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 722 EMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEML 781
E++ G++ G I+F Q +WI T+++NI+ G ++ RY VI AC L D
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKF 115
Query: 782 PAGDSTEIGEKGINLSGGQKQRV 804
D+ +GE GI LSGGQ+ R+
Sbjct: 116 AEKDNIVLGEGGITLSGGQRARI 138
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+ + +G ++AI GS G+GK+SL+ + GE++ G + G ++F Q +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+FG ++ RY V+ AC L D D+T +GE G+ LSGGQ+ R+
Sbjct: 112 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+ + +G ++AI GS G+GK+SL+ + GE++ G + G ++F Q +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+FG ++ RY V+ AC L D D+T +GE G+ LSGGQ+ R+
Sbjct: 112 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L++IN ++ G L+A+ GS GAGK+SL+ + GE++ G++ G I+F Q +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY VI AC L D D+ +GE GI LSGGQ+ R+
Sbjct: 112 PGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 169
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+ + +G ++AI GS G+GK+SL+ + GE++ G + G ++F Q +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY V+ AC L D D+T +GE G+ LSGGQ+ R+
Sbjct: 112 PGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+ + +G ++AI GS G+GK+SL+ + GE++ G + G ++F Q +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY V+ AC L D D+T +GE G+ LSGGQ+ R+
Sbjct: 112 PGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L++IN ++ G L+A+ GS GAGK+SL+ + GE++ G++ G I+F Q +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+FG ++ RY VI AC L D D+ +GE GI LS GQ+ ++
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 169
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L++IN ++ G L+A+ GS GAGK+SL+ + GE++ G++ G I+F Q +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY VI AC L D D+ +GE GI LSGGQ+ R+
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L++IN ++ G L+A+ GS GAGK+SL+ + GE++ G++ G I+F Q +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY VI AC L D D+ +GE GI LSGGQ+ R+
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+ + +G ++AI GS G+GK+SL+ + GE++ G + G ++F Q +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY V+ AC L D D+T +GE G+ LSGGQ+ R+
Sbjct: 112 PGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 168
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L++IN ++ G L+A+ GS GAGK+SL+ + GE++ G++ G I+F Q +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+ G ++ RY VI AC L D D+ +GE GI LS GQ+ ++
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 168
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 24/156 (15%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ +EN FT+ + P L+ +N+RV G VA+VGS G GKS+++S L D
Sbjct: 416 ITVENVHFTYPSRPD------VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771
+ G++ G ++A V Q+ + N T+ +NI GK + R +++ A
Sbjct: 470 VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE--EMVAA 527
Query: 772 CALTPD---FEMLPAGDSTEIGEKGINLSGGQKQRV 804
C + + LP G +T +G++G LSGGQKQR+
Sbjct: 528 CKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 22/172 (12%)
Query: 649 LPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSV 708
+ +L L G ++ +N F + E E L+ ++ V G +A+VG
Sbjct: 1061 IDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIE------ILKGLSFSVEPGQTLALVGPS 1114
Query: 709 GAGKSSLVSALCGEMDKISGRV-------------NTKGSIAFVPQQAWIQNATLRDNIV 755
G GKS++V+ L D + G + +T+ IA V Q+ + + ++ +NI+
Sbjct: 1115 GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII 1174
Query: 756 FGKTHVPRRYNKVIDACALTPDFEM---LPAGDSTEIGEKGINLSGGQKQRV 804
+G +V +A L LP G T +G++G LSGGQKQR+
Sbjct: 1175 YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 18/157 (11%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
P+ I+ G + + P L++IN+ + +G VA VG G GKS+L++ +
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391
Query: 724 DKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVID 770
D SG++ G I V Q + + T+++NI+ G+ +V++
Sbjct: 392 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE--EVVE 449
Query: 771 ACALT--PDFEM-LPAGDSTEIGEKGINLSGGQKQRV 804
A + DF M LP G TE+GE+G+ LSGGQKQR+
Sbjct: 450 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 25/153 (16%)
Query: 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727
EN F + NT+ P L +N V+ G+LVA++G G+GKS+L++ + +D
Sbjct: 345 ENVEFRYFENTD-------PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER 397
Query: 728 GRV-------------NTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACAL 774
GRV + +G I+ VPQ+ + + T+++N+ +G+ +++++A +
Sbjct: 398 GRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKI 455
Query: 775 TP--DFEM-LPAGDSTEIGEKGINLSGGQKQRV 804
DF + LP G + + G N SGGQKQR+
Sbjct: 456 AQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 21/158 (13%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
PL + G +E N A+ TLQ+++ V G +A+VG GAGKS+++ L
Sbjct: 46 PLRFQKGRIEFE-NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104
Query: 724 DKISGRVNTKGS-------------IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVID 770
D SG + G I VPQ + N T+ DNI +G+ N ++
Sbjct: 105 DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG---NDEVE 161
Query: 771 ACALTPDFE----MLPAGDSTEIGEKGINLSGGQKQRV 804
A A P G T++GE+G+ LSGG+KQRV
Sbjct: 162 AAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 52/278 (18%)
Query: 548 FTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAA 607
F I +SF M+Y+ AA F Y VT+ + ENV +V + A
Sbjct: 934 FGITFSFTQAMMYFSYA-----------AAFRFGAYLVTQQLMTFENVLLVFSAIVFGA- 981
Query: 608 RRLHLMVLTNILHSCMSFFDTT----PLGRILSRCGK-DVDTVDNILPNLLLTGVYSSFT 662
M + + + T + RI+ + + D + + PN+L V S
Sbjct: 982 -----MAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGV 1036
Query: 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722
F + S P LQ +++ V++G +A+VGS G GKS++V L
Sbjct: 1037 --------VFNYPTRP------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082
Query: 723 MDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVI 769
D ++G V G + V Q+ + + ++ +NI +G Y +++
Sbjct: 1083 YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV 1142
Query: 770 DACA---LTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
A + + LP +T +G+KG LSGGQKQR+
Sbjct: 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L+ +N++V+ G VA+VG+ G GKS+ V + D + G V+ G
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEM-LPAGDSTEIGEKGI 794
I V Q+ + T+ +NI +G+ V + A DF M LP T +GE+G
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 795 NLSGGQKQRV 804
LSGGQKQR+
Sbjct: 526 QLSGGQKQRI 535
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734
S P LQ +++ V++G +A+VGS G GKS++V L D ++G V G
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 735 ---SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACA---LTPDFEMLPAGDSTE 788
+ V Q+ + + ++ +NI +G Y +++ A + + LP +T
Sbjct: 1105 LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 789 IGEKGINLSGGQKQRV 804
+G+KG LSGGQKQR+
Sbjct: 1165 VGDKGTQLSGGQKQRI 1180
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L+ +N++V+ G VA+VG+ G GKS+ V + D + G V+ G
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEM-LPAGDSTEIGEKGI 794
I V Q+ + T+ +NI +G+ V + A DF M LP T +GE+G
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 795 NLSGGQKQRV 804
LSGGQKQR+
Sbjct: 526 QLSGGQKQRI 535
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
T L N TFT+ P L+NIN+++ G VA+VG G+GKS++ S +
Sbjct: 339 TGDLEFRNVTFTYP-------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 722 EMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKV 768
D G + G +A V Q + N T+ +NI + +T R ++
Sbjct: 392 FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-EQI 450
Query: 769 IDAC--ALTPDF-EMLPAGDSTEIGEKGINLSGGQKQRV 804
+A A DF + G T IGE G+ LSGGQ+QR+
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
T + N TFT+ P L+NIN+++ G VA+VG G+GKS++ S +
Sbjct: 339 TGDVEFRNVTFTYP-------GRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 722 EMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKV 768
D G + G +A V Q + N T+ +NI + +T R ++
Sbjct: 392 FYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSR-EQI 450
Query: 769 IDAC--ALTPDF-EMLPAGDSTEIGEKGINLSGGQKQRV 804
+A A DF + G T IGE G+ LSGGQ+QR+
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 29/165 (17%)
Query: 660 SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
SF L +N F + E P Q+ ++ + G++ A+VG G+GKS+++S L
Sbjct: 337 SFQGALEFKNVHFAYPARPE------VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
Query: 720 CGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK-------T 759
D SG ++ G I V Q+ + + ++ +NI +G
Sbjct: 391 LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450
Query: 760 HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+R +V +A A +F P G +T +GEKG+ LSGGQKQR+
Sbjct: 451 EEIQRVAEVANAVAFIRNF---PQGFNTVVGEKGVLLSGGQKQRI 492
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 29/165 (17%)
Query: 660 SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
SF L +N F + E P Q+ ++ + G++ A+VG G+GKS+++S L
Sbjct: 368 SFQGALEFKNVHFAYPARPE------VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
Query: 720 CGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK-------T 759
D SG ++ G I V Q+ + + ++ +NI +G
Sbjct: 422 LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 481
Query: 760 HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+R +V +A A +F P G +T +GEKG+ LSGGQKQR+
Sbjct: 482 EEIQRVAEVANAVAFIRNF---PQGFNTVVGEKGVLLSGGQKQRI 523
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALC----GEMD-KISG-------RVNTKGS 735
TL++IN + GT A+VG G+GKS++ L E D KI G R + +
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI 94
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA--CALTPDF-EMLPAGDSTEIGEK 792
I VPQ + N T++ NI++GK +VI A A DF E LP T +G K
Sbjct: 95 IGIVPQDTILFNETIKYNILYGKLDATDE--EVIKATKSAQLYDFIEALPKKWDTIVGNK 152
Query: 793 GINLSGGQKQRV 804
G+ LSGG++QR+
Sbjct: 153 GMKLSGGERQRI 164
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
+++ TFT++ + P L +++ + +G VA+VG G+GKS++ + D
Sbjct: 344 VKDVTFTYQ-------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD 396
Query: 727 SGRV-------------NTKGSIAFVPQQAWIQNATLRDNIVFG-KTHVPRRYNKVIDAC 772
SG + N + A V Q + N T+ +NI + + R +
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQ 456
Query: 773 ALTPDF-EMLPAGDSTEIGEKGINLSGGQKQRV 804
A +F E +P G T IGE G +LSGGQ+QRV
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL-------CGEM-------DKISGR 729
+S L++I+ + +++A G G GKS++ S L GE+ D IS
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 730 VNTKGSIAFVPQQAWIQNATLRDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGDST 787
N + I FV Q + I T+R+N+ +G + +V+D E +P +T
Sbjct: 73 -NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 788 EIGEKGINLSGGQKQRV 804
E+GE+G+ +SGGQ+QR+
Sbjct: 132 EVGERGVKISGGQRQRL 148
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 135
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 136 GEQGAGLSGGQRQRI 150
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 135
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 136 GEQGAGLSGGQRQRI 150
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 134 GEQGAGLSGGQRQRI 148
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 134 GEQGAGLSGGQRQRI 148
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 140 GEQGAGLSGGQRQRI 154
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 140 GEQGAGLSGGQRQRI 154
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 744 WIQ---NATLRDNIVFGKTHVPR--------RYNKVIDACAL--TPDF-EMLPAGDSTEI 789
W++ L+DN++ ++ + KVI A L DF L G +T +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 790 GEKGINLSGGQKQRV 804
GE+G LSGGQ+QR+
Sbjct: 140 GEQGAGLSGGQRQRI 154
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
LQ + + G + A+VG G+GKS++ + L G+V G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTP---DF-EMLPAGDSTEIGE 791
+A V Q+ + + R+NI +G T P + I A A+ DF P G TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 792 KGINLSGGQKQRV 804
G LSGGQ+Q V
Sbjct: 153 TGNQLSGGQRQAV 165
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
LQ + + G + A+VG G+GKS++ + L G+V G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTP---DF-EMLPAGDSTEIGE 791
+A V Q+ + + R+NI +G T P + I A A+ DF P G TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 792 KGINLSGGQKQRV 804
G LSGGQ+Q V
Sbjct: 153 TGNQLSGGQRQAV 165
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
LQ + +R G + A+VG G+GKS++ + L G++ G
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 92
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPD----FEMLPAGDSTEIGE 791
+A V Q+ + +L++NI +G T P + I A A+ LP G TE+ E
Sbjct: 93 VAAVGQEPQVFGRSLQENIAYGLTQKPTM--EEITAAAVKSGAHSFISGLPQGYDTEVDE 150
Query: 792 KGINLSGGQKQRV 804
G LSGGQ+Q V
Sbjct: 151 AGSQLSGGQRQAV 163
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
LQ + + G + A+VG G+GKS++ + L G+V G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTP---DF-EMLPAGDSTEIGE 791
+A V Q+ + + R+NI +G T P + I A A+ DF P G TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 792 KGINLSGGQKQRV 804
G L+ GQ+Q V
Sbjct: 153 TGNQLAVGQRQAV 165
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
+ P L++I ++ G VA+VG G+GK+++V+ L D G++ G
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPD---FEMLPAGDST 787
SI V Q + + T+++N+ +G ++ +A LT + LP G T
Sbjct: 426 SLRSSIGIVLQDTILFSTTVKENLKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYET 483
Query: 788 EIGEKGINLSGGQKQ 802
+ + G +LS GQ+Q
Sbjct: 484 VLTDNGEDLSQGQRQ 498
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 609 RLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPN 651
RL + + + FFD TP G I+SR DVD ++N+L N
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGN 153
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 898 LHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAI 937
L + L ++ + FFD TP G IISR DVD ++N +
Sbjct: 112 LRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVL 151
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA- 748
Q +N + +G ++A++G G GKS+L+ L G I G++ SI FVPQ A
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81
Query: 749 TLRDNIVFGK-THV-----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI-NLSGGQK 801
++ D ++ G+ TH+ P+ ++ + AL D+ L T + ++ +LSGGQ+
Sbjct: 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL--DYLNL-----THLAKREFTSLSGGQR 134
Query: 802 QRV 804
Q +
Sbjct: 135 QLI 137
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--- 734
TEG A L+NI+ + G V ++G G+GKS+L+SA + G + G
Sbjct: 30 TEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSW 84
Query: 735 ----------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAG 784
+ +PQ+ +I + T R N+ H + KV D L E P
Sbjct: 85 DSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGK 144
Query: 785 DSTEIGEKGINLSGGQKQ 802
+ + G LS G KQ
Sbjct: 145 LDFVLVDGGCVLSHGHKQ 162
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--IAFVPQQ 742
S P + +IN + + +A++G GAGKS+L++ L GE+ SG V T + IA++ Q
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744
Query: 743 AW 744
A+
Sbjct: 745 AF 746
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--IAFVPQQ 742
S P + +IN + + +A++G GAGKS+L++ L GE+ SG V T + IA++ Q
Sbjct: 679 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 738
Query: 743 AW 744
A+
Sbjct: 739 AF 740
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--IAFVPQQ 742
S P + +IN + + +A++G GAGKS+L++ L GE+ SG V T + IA++ Q
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744
Query: 743 AW 744
A+
Sbjct: 745 AF 746
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA----------- 737
L+++N G + +VG G+GK++L+ L G + +G + GS A
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPADPFLLRKNVGY 85
Query: 738 -FVPQQAWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
F + I AT+ +++ F ++ + +R KV++ L+ L A D
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSG----LAAADP--- 138
Query: 790 GEKGINLSGGQKQRV 804
+NLSGGQKQR+
Sbjct: 139 ----LNLSGGQKQRL 149
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 30/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--NTKGSIAFVPQ----- 741
L NIN+++++G +A++G G+GKS+L+ + G SG++ + K P+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 742 ---QAWI--QNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
Q W + T+ NI F + + ++ +V + P
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------ 132
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 133 -----QLSGGQQQRV 142
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-IAFVPQQ---- 742
+++ ++ ++REG +V ++G G+GK++++ + G G V G + +P Q
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 743 -------AWIQNATLRDNIVFG--KTHVPR-----RYNKVIDACALTPDFEMLPAGDSTE 788
A Q+ T+ DN+ FG + VP+ R +++ L P
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH----- 144
Query: 789 IGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 145 ------ELSGGQQQRV 154
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 35/148 (23%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP 740
+G + L N+++ V G + ++G+ GAGKS+L+ + G V G
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 741 QQAWIQNAT------------LRDNIVFG------------KTHVPRRYNKVIDACALTP 776
++ + A L VFG K V RR +++ L
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 132
Query: 777 DFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ P+ NLSGGQKQRV
Sbjct: 133 KHDSYPS-----------NLSGGQKQRV 149
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 35/148 (23%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP 740
+G + L N+++ V G + ++G+ GAGKS+L+ + G V G
Sbjct: 36 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 95
Query: 741 QQAWIQNAT------------LRDNIVFG------------KTHVPRRYNKVIDACALTP 776
++ + A L VFG K V RR +++ L
Sbjct: 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 777 DFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ P+ NLSGGQKQRV
Sbjct: 156 KHDSYPS-----------NLSGGQKQRV 172
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 35/148 (23%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP 740
+G + L N+++ V G + ++G+ GAGKS+L+ + G V G
Sbjct: 36 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 95
Query: 741 QQAWIQNAT------------LRDNIVFG------------KTHVPRRYNKVIDACALTP 776
++ + A L VFG K V RR +++ L
Sbjct: 96 SESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 777 DFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ P+ NLSGGQKQRV
Sbjct: 156 KHDSYPS-----------NLSGGQKQRV 172
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-------RVN----TKGSIAF 738
++IN+ + EG V VG G GKS+L+ + G SG R+N + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 739 VPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
V Q A + ++ +N+ FG K + +R N+V + L + P
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA------ 133
Query: 791 EKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 134 -----LSGGQRQRV 142
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-------RVN----TKGSIAF 738
++IN+ + EG V VG G GKS+L+ + G SG R+N + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 739 VPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
V Q A + ++ +N+ FG K + +R N+V + L + P
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA------ 133
Query: 791 EKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 134 -----LSGGQRQRV 142
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725
G E L+N+N+ ++EG V+I+G G+GKS++++ + G +DK
Sbjct: 14 GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDK 56
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725
G E L+N+N+ ++EG V+I+G G+GKS++++ + G +DK
Sbjct: 14 GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDK 56
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-------RVN----TKGSIAF 738
++IN+ + EG V VG G GKS+L+ + G SG R+N + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 739 VPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
V Q A + ++ +N+ FG K + +R N+V + L + P
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA------ 133
Query: 791 EKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 134 -----LSGGQRQRV 142
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L+ INM ++ G + AI+G G GKS+L G + SGR+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 73/186 (39%), Gaps = 33/186 (17%)
Query: 644 TVDNIL--PNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTL 701
TVD +L P+ LTG Y S + + + + +G L+NI++ + G
Sbjct: 554 TVDELLKNPDSSLTGEYLSGKRKITVNKTRRLPYASLKIKGVRHN-NLKNIDVEIPLGVF 612
Query: 702 VAIVGSVGAGKSSLVSAL---------------CGEMDKISGRVNTKGSIAFVPQQAWIQ 746
V + G G+GKSSLV GE D I G N IA Q+ I
Sbjct: 613 VCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAI--DQSPI- 669
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK--GINLSGGQKQRV 804
T R N P Y KV D + F M PA + + NL GG+ +
Sbjct: 670 GRTPRSN--------PATYTKVFD--EIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEAC 719
Query: 805 KWQVYL 810
+ Q Y+
Sbjct: 720 QGQGYV 725
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSL 715
L+NI +R+ + LV I G G+GKSSL
Sbjct: 13 NLKNITVRIPKNRLVVITGVSGSGKSSL 40
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 36/141 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA-------FVPQ 741
++++++ +++G + ++G G GK++ + + G + G++ + ++ FVP
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 742 Q-----------AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPA 783
+ A + T+ DNI F K + +R +V + LT E+L
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLT---ELL-- 136
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
K LSGGQ+QRV
Sbjct: 137 ------NRKPRELSGGQRQRV 151
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 27/133 (20%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-----------NTKGSI 736
+L N++++V G I+G GAGK+ + + G SGR+ K I
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 737 AFVPQQ-AWIQNATLRDNIVFG----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGE 791
AFV Q + + ++ N+ FG K P+R V+D A E L +
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR---VLD-TARDLKIEHL-------LDR 123
Query: 792 KGINLSGGQKQRV 804
+ LSGG++QRV
Sbjct: 124 NPLTLSGGEQQRV 136
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ 741
+R+G ++ IVG G GK++ V L G + G+V ++A+ PQ
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ 424
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ 741
+R+G ++ IVG G GK++ V L G + G+V ++A+ PQ
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ 410
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 9/51 (17%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV--PQQAW 744
VR G ++ +VG GAGKS+L++ +++G + KGSI F P +AW
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA-------RMAGMTSGKGSIQFAGQPLEAW 66
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 9/51 (17%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV--PQQAW 744
VR G ++ +VG GAGKS+L++ +++G + KGSI F P +AW
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA-------RMAGMTSGKGSIQFAGQPLEAW 66
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
+ ++++ + G +VAI+G GAGKS+L+ L G + G + G +W A
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ----NLNSWQPKA 82
Query: 749 TLRDNIV---FGKTHVPRRYNKVI-----------DACALTPDFEMLPAGDSTEIGEKGI 794
R V + + P ++VI D AL +++ D + ++
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQ---QVMAQTDCLALAQRDY 139
Query: 795 N-LSGGQKQRVK 805
LSGG++QRV+
Sbjct: 140 RVLSGGEQQRVQ 151
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725
T G E L+N+N+ ++EG V+I G G+GKS+ ++ + G +DK
Sbjct: 10 TYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDK 56
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV--PQQAW 744
VR G ++ +VG GAGKS+L++ + +G + KGSI F P +AW
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA-------RXAGXTSGKGSIQFAGQPLEAW 66
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L+N+++ + EG + + G+ G+GKS+L+ + G ++ SG V
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 66
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L+N+++ + EG + + G+ G+GKS+L+ + G ++ SG V
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV--PQQAW 744
VR G ++ +VG GAGKS+L++ + +G + KGSI F P +AW
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA-------RXAGXTSGKGSIQFAGQPLEAW 66
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 27/133 (20%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
++ I+++V G +V ++G+ GAGK++ +SA+ G + G++ G
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 736 -IAFVPQQAWI-QNATLRDNIVFGKTHVPRRYNKVIDACALTPD----FEMLPAGDSTEI 789
IA VP+ I T+ +N+ G YN+ D + D F + P +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGA------YNRK-DKEGIKRDLEWIFSLFPRLKE-RL 133
Query: 790 GEKGINLSGGQKQ 802
+ G LSGG++Q
Sbjct: 134 KQLGGTLSGGEQQ 146
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--------NTKGSIAF 738
P L+ I M + +G +V G G GK++L+ + + + G + KG I F
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82
Query: 739 VPQQ 742
+P++
Sbjct: 83 LPEE 86
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIV 755
+++G ++ IVG G GK++ V L G + G++ ++A+ PQ +I+ + V
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADY--EGTV 364
Query: 756 FGKTHVPRRYNKVIDACALTPDF---EMLPAGDSTEIGEKGIN-LSGGQKQRV 804
+ IDA L +F E+L ++ ++ +N LSGG+ QRV
Sbjct: 365 Y-------ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRV 410
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723
V+EG +V IVG G GKS+ V L G++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQL 71
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
L+ IN+ +REG +V ++G G+GKS+ + L
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCL 49
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
L+ IN+ +REG +V ++G G+GKS+ + L
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 28/137 (20%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTKG------------- 734
L+ I++ V++G V+I+G+ G+GKS+L+ L G +D G+V +G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 735 ----SIAFVPQQAW-IQNATLRDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGDST 787
+ FV Q + I T +N++ K P++ K L+ L GD
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSE----LGLGD-- 132
Query: 788 EIGEKGINLSGGQKQRV 804
++ K LSGG++QRV
Sbjct: 133 KLSRKPYELSGGEQQRV 149
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 28/139 (20%)
Query: 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK----ISGRVNTKG------------- 734
I++ + E ++ AIVG +GKS+++ A+ + +SGRV KG
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 735 ----SIAFVPQQAWIQ-NATLRDNIVFGKT---HVPR-RYNKVIDACALTPDFEMLPAGD 785
IA VPQ A N T++ F T H R ++++I+ + M+
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKA--SEKLRMVRLNP 144
Query: 786 STEIGEKGINLSGGQKQRV 804
+ + LSGG KQRV
Sbjct: 145 EAVLNSYPLQLSGGMKQRV 163
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
P L +I++ + G ++ I+G+ G GK++L+ L G SG ++ G F
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI-AFVPQ---------- 741
N +EG ++ I+G G GK++ L GE+ G V + I ++ PQ
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 742 QAWIQNAT 749
Q +++NA+
Sbjct: 348 QQYLENAS 355
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L +++ V +G + I+G G+GKS+L++ + G + GRV
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L +++ V +G + I+G G+GKS+L++ + G + GRV
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK--ISGRVNTKGS--IAFV 739
E L+ +++ V G + AI+G G+GKS+L + L G D G V KG +A
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 71
Query: 740 PQ 741
P+
Sbjct: 72 PE 73
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK--ISGRVNTKGS--IAFV 739
E L+ +++ V G + AI+G G+GKS+L + L G D G V KG +A
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90
Query: 740 PQ 741
P+
Sbjct: 91 PE 92
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 35/141 (24%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR-------VNTKGSIAFVP 740
L N+N+ + G I+G GAGK++ + + G +G V + G + P
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 741 Q--------QAWI--QNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPA 783
+ Q W N T +NI F K + +R +V + P
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 140 -----------ELSGGQQQRV 149
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L +++ V +G + I+G G+GKS+L++ + G + GRV
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
L+N+++++ GT VA+ G G+GKS+LV+ +
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
L+N+++++ GT VA+ G G+GKS+LV+ +
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 44/156 (28%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA-------FVP 740
++ +++ V++G + ++G G GK++ + + G + G++ + FVP
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77
Query: 741 QQ-----------AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLP 782
+ A + T+ DNI F + + +R +V + LT E+L
Sbjct: 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT---ELL- 133
Query: 783 AGDSTEIGEKGINLSGGQKQRV--------KWQVYL 810
K LSGGQ+QRV K QV+L
Sbjct: 134 -------NRKPRELSGGQRQRVALGRAIVRKPQVFL 162
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCG 721
+REG V I G AGKSSL++AL G
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAG 29
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
L+N+++++ GT VA+ G G+GKS+LV+ +
Sbjct: 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 32/136 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-------------NTKGS 735
+ +N+ +++G + ++G G GK++ + + G + GR+ + S
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 736 IAFVPQQAWIQNATLRDNIV-------FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+ F W + T+ +NI F K + +R + + PA
Sbjct: 87 MVFQSYAVW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA----- 140
Query: 789 IGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 141 ------QLSGGQRQRV 150
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 32/136 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-------------NTKGS 735
+ +N+ +++G + ++G G GK++ + + G + GR+ + S
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 736 IAFVPQQAWIQNATLRDNIV-------FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+ F W + T+ +NI F K + +R + + PA
Sbjct: 88 MVFQSYAVW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA----- 141
Query: 789 IGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 142 ------QLSGGQRQRV 151
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
+L+NIN+ V G V I+G G+GK++L+ A+ G
Sbjct: 20 SLENINLEV-NGEKVIILGPNGSGKTTLLRAISG 52
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732
R R+G V G GAGKS+L AL + ++ GR T
Sbjct: 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 427 VLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAV 486
++ G+ V LY W F + I++ R+ K + EA +F+ PFLV L A
Sbjct: 252 LIGGLWVANLYYW--GFNQYIIQ-RTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAA 308
Query: 487 YLLSDDSHVL 496
Y+++ D ++
Sbjct: 309 YVITSDPQLM 318
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722
L+ +N+ V +G + A++G GAGKS+L L G+
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 427 VLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAV 486
++ G+ V LY W F + I++ R+ K + EA +F+ PFLV L A
Sbjct: 252 LIGGLWVANLYYW--GFNQYIIQ-RTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAA 308
Query: 487 YLLSDDSHVL 496
Y+++ D ++
Sbjct: 309 YVITSDPQLM 318
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAF 738
E ++P + R+ +G L +VG G GK+ L A+ GE RV T F
Sbjct: 57 EFLKNPSRFHEMGARIPKGVL--LVGPPGVGKTHLARAVAGE-----ARVPFITASGSDF 109
Query: 739 VPQQAWIQNATLRDNIVFGKTHVP 762
V + A +RD K H P
Sbjct: 110 VEMFVGVGAARVRDLFETAKRHAP 133
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAF 738
E ++P + R+ +G L +VG G GK+ L A+ GE RV T F
Sbjct: 33 EFLKNPSRFHEMGARIPKGVL--LVGPPGVGKTHLARAVAGE-----ARVPFITASGSDF 85
Query: 739 VPQQAWIQNATLRDNIVFGKTHVP 762
V + A +RD K H P
Sbjct: 86 VEMFVGVGAARVRDLFETAKRHAP 109
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAFVPQ 741
++P + R+ +G L +VG G GK+ L A+ GE RV T FV
Sbjct: 51 KNPSRFHEMGARIPKGVL--LVGPPGVGKTHLARAVAGE-----ARVPFITASGSDFVEM 103
Query: 742 QAWIQNATLRDNIVFGKTHVP 762
+ A +RD K H P
Sbjct: 104 FVGVGAARVRDLFETAKRHAP 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,646,778
Number of Sequences: 62578
Number of extensions: 1001957
Number of successful extensions: 2755
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2597
Number of HSP's gapped (non-prelim): 135
length of query: 950
length of database: 14,973,337
effective HSP length: 108
effective length of query: 842
effective length of database: 8,214,913
effective search space: 6916956746
effective search space used: 6916956746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)