Query psy16196
Match_columns 950
No_of_seqs 512 out of 3357
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:11:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054|consensus 100.0 5E-143 1E-147 1312.4 81.6 754 37-949 37-944 (1381)
2 TIGR00957 MRP_assoc_pro multi 100.0 3E-114 6E-119 1123.3 93.9 828 6-949 75-1091(1522)
3 PLN03130 ABC transporter C fam 100.0 3E-112 6E-117 1101.5 88.4 755 28-948 115-1038(1622)
4 PLN03232 ABC transporter C fam 100.0 3E-110 7E-115 1083.9 88.8 755 28-948 115-1035(1495)
5 TIGR01271 CFTR_protein cystic 100.0 7E-103 2E-107 1013.0 76.7 697 126-948 2-1010(1490)
6 PTZ00243 ABC transporter; Prov 100.0 1.5E-91 3.2E-96 907.6 77.9 760 126-948 58-1083(1560)
7 PRK11174 cysteine/glutathione 100.0 1.9E-57 4.2E-62 548.3 56.1 459 231-804 10-494 (588)
8 KOG0058|consensus 100.0 9.4E-58 2E-62 520.0 48.5 457 233-804 137-613 (716)
9 TIGR02868 CydC thiol reductant 100.0 2.8E-56 6E-61 531.5 55.5 458 234-804 4-479 (529)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.3E-54 5E-59 529.5 56.2 453 232-804 125-597 (686)
11 COG2274 SunT ABC-type bacterio 100.0 3.8E-54 8.2E-59 512.0 55.8 456 230-804 141-618 (709)
12 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.1E-53 2.3E-58 526.0 56.6 462 232-804 143-624 (710)
13 TIGR03375 type_I_sec_LssB type 100.0 1.5E-53 3.3E-58 522.9 56.4 457 231-804 135-610 (694)
14 TIGR00958 3a01208 Conjugate Tr 100.0 4.6E-53 9.9E-58 517.5 56.6 454 235-804 153-626 (711)
15 TIGR02857 CydD thiol reductant 100.0 2.3E-52 4.9E-57 497.9 54.6 446 242-804 2-467 (529)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 2.7E-52 5.9E-57 513.0 55.6 454 233-804 146-620 (708)
17 TIGR02203 MsbA_lipidA lipid A 100.0 6.5E-52 1.4E-56 499.3 55.7 453 234-804 5-478 (571)
18 PRK11176 lipid transporter ATP 100.0 1.2E-51 2.5E-56 497.7 55.6 455 232-804 14-489 (582)
19 PRK10790 putative multidrug tr 100.0 1.4E-50 2.9E-55 488.8 56.9 451 234-804 14-485 (592)
20 PRK11160 cysteine/glutathione 100.0 1.2E-50 2.6E-55 485.6 55.1 451 236-804 9-484 (574)
21 TIGR02204 MsbA_rel ABC transpo 100.0 6.3E-50 1.4E-54 482.4 56.5 459 232-804 7-485 (576)
22 COG1132 MdlB ABC-type multidru 100.0 1.1E-49 2.5E-54 478.0 54.5 449 233-804 6-474 (567)
23 PRK10789 putative multidrug tr 100.0 8.1E-50 1.8E-54 478.3 52.6 436 252-804 4-460 (569)
24 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-49 3.1E-54 487.3 56.0 456 231-804 127-602 (694)
25 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-49 3.2E-54 474.4 53.3 441 239-804 2-463 (544)
26 PRK13657 cyclic beta-1,2-gluca 100.0 4.8E-49 1E-53 474.6 55.9 450 235-804 11-480 (588)
27 TIGR01192 chvA glucan exporter 100.0 5.3E-48 1.2E-52 463.3 56.5 451 234-804 10-480 (585)
28 KOG0055|consensus 100.0 1.6E-48 3.6E-53 468.2 50.8 448 238-804 659-1135(1228)
29 PTZ00265 multidrug resistance 100.0 2.2E-48 4.8E-53 501.0 55.3 458 236-804 818-1367(1466)
30 PTZ00265 multidrug resistance 100.0 1.1E-46 2.4E-51 485.3 65.9 457 233-804 50-588 (1466)
31 COG4988 CydD ABC-type transpor 100.0 2.4E-47 5.3E-52 427.7 51.8 439 247-804 4-465 (559)
32 TIGR00957 MRP_assoc_pro multi 100.0 2.3E-47 4.9E-52 497.3 56.0 462 232-804 953-1430(1522)
33 KOG0055|consensus 100.0 9.9E-47 2.1E-51 453.0 51.0 580 241-944 23-793 (1228)
34 PLN03130 ABC transporter C fam 100.0 1.2E-46 2.6E-51 489.4 55.7 460 232-804 902-1383(1622)
35 PTZ00243 ABC transporter; Prov 100.0 9E-46 2E-50 480.8 55.3 410 312-804 1026-1454(1560)
36 PLN03232 ABC transporter C fam 100.0 8.9E-46 1.9E-50 481.8 55.2 387 308-804 974-1380(1495)
37 KOG0057|consensus 100.0 1.5E-45 3.2E-50 405.9 43.0 434 251-804 38-496 (591)
38 KOG0056|consensus 100.0 1.6E-46 3.5E-51 403.0 25.6 442 247-804 219-683 (790)
39 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.2E-44 1.8E-48 424.9 50.4 450 233-804 8-479 (555)
40 TIGR01271 CFTR_protein cystic 100.0 3.9E-43 8.5E-48 456.2 54.6 394 309-804 950-1362(1490)
41 COG4987 CydC ABC-type transpor 100.0 1.5E-42 3.2E-47 382.1 47.3 454 232-804 6-483 (573)
42 COG4618 ArpD ABC-type protease 100.0 8.7E-43 1.9E-47 380.1 44.6 445 232-804 12-481 (580)
43 PRK10522 multidrug transporter 100.0 2.8E-42 6E-47 411.7 50.4 432 233-804 3-458 (547)
44 KOG0054|consensus 100.0 3.3E-41 7.2E-46 415.4 47.5 384 308-804 882-1284(1381)
45 TIGR00954 3a01203 Peroxysomal 100.0 9.4E-41 2E-45 403.9 47.4 474 235-804 83-591 (659)
46 COG5265 ATM1 ABC-type transpor 100.0 3.8E-37 8.2E-42 328.8 27.4 377 312-804 10-408 (497)
47 COG4615 PvdE ABC-type sideroph 100.0 4.9E-26 1.1E-30 241.0 39.3 437 233-804 3-457 (546)
48 PRK14257 phosphate ABC transpo 100.0 1.6E-29 3.4E-34 280.4 13.7 128 663-804 79-234 (329)
49 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.3E-26 2.8E-31 250.7 13.5 133 664-804 2-147 (275)
50 COG4178 ABC-type uncharacteriz 99.9 4.7E-23 1E-27 236.5 42.4 377 307-804 109-524 (604)
51 cd03250 ABCC_MRP_domain1 Domai 99.9 6.4E-26 1.4E-30 236.3 13.6 133 665-804 1-136 (204)
52 cd03291 ABCC_CFTR1 The CFTR su 99.9 5.3E-24 1.1E-28 231.2 14.9 134 660-804 35-168 (282)
53 KOG0060|consensus 99.9 8.3E-22 1.8E-26 219.1 32.2 416 298-806 136-581 (659)
54 cd03244 ABCC_MRP_domain2 Domai 99.9 5.3E-24 1.1E-28 224.9 14.0 134 664-804 2-148 (221)
55 cd03290 ABCC_SUR1_N The SUR do 99.9 6.6E-24 1.4E-28 223.5 13.5 131 666-804 2-149 (218)
56 cd03288 ABCC_SUR2 The SUR doma 99.9 1.2E-23 2.7E-28 227.0 13.7 136 662-804 17-165 (257)
57 cd03252 ABCC_Hemolysin The ABC 99.9 2E-23 4.4E-28 222.9 13.3 133 665-804 1-147 (237)
58 COG1116 TauB ABC-type nitrate/ 99.9 1.4E-23 3E-28 214.7 11.3 124 664-807 3-142 (248)
59 cd03254 ABCC_Glucan_exporter_l 99.9 2.2E-23 4.8E-28 221.4 13.0 133 664-804 2-148 (229)
60 cd03245 ABCC_bacteriocin_expor 99.9 3.9E-23 8.6E-28 218.1 14.2 134 664-804 2-149 (220)
61 COG3839 MalK ABC-type sugar tr 99.9 2.5E-23 5.3E-28 225.7 12.0 121 664-804 3-142 (338)
62 cd03251 ABCC_MsbA MsbA is an e 99.9 6.9E-23 1.5E-27 218.3 13.3 133 665-804 1-147 (234)
63 cd03253 ABCC_ATM1_transporter 99.9 6.6E-23 1.4E-27 218.8 13.1 132 665-804 1-146 (236)
64 COG1117 PstB ABC-type phosphat 99.9 6.2E-23 1.3E-27 202.2 8.7 126 663-804 6-158 (253)
65 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.6E-22 3.5E-27 210.1 12.2 121 664-804 4-148 (254)
66 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.9E-22 4.1E-27 215.5 12.6 134 665-804 1-148 (238)
67 COG1126 GlnQ ABC-type polar am 99.9 9.3E-23 2E-27 202.1 9.2 121 664-804 2-145 (240)
68 cd03248 ABCC_TAP TAP, the Tran 99.9 4.5E-22 9.8E-27 210.9 13.4 137 662-804 9-159 (226)
69 COG1120 FepC ABC-type cobalami 99.9 6.7E-22 1.4E-26 206.6 10.8 121 664-804 2-147 (258)
70 COG2884 FtsE Predicted ATPase 99.9 5.1E-22 1.1E-26 192.2 9.1 121 665-804 2-146 (223)
71 COG3842 PotA ABC-type spermidi 99.9 6.2E-22 1.3E-26 216.0 10.3 122 663-804 4-145 (352)
72 COG1136 SalX ABC-type antimicr 99.9 1.6E-21 3.4E-26 199.9 12.7 124 665-804 2-151 (226)
73 COG1125 OpuBA ABC-type proline 99.9 3.5E-22 7.7E-27 201.6 7.4 120 665-804 2-144 (309)
74 cd03226 ABC_cobalt_CbiO_domain 99.9 1.7E-21 3.7E-26 203.1 11.6 119 667-804 2-135 (205)
75 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.5E-21 7.6E-26 201.1 13.8 117 663-804 5-134 (207)
76 COG4619 ABC-type uncharacteriz 99.9 3.5E-22 7.6E-27 188.9 5.5 113 684-806 14-144 (223)
77 PRK11650 ugpC glycerol-3-phosp 99.9 1.9E-21 4E-26 218.1 12.3 122 664-804 3-143 (356)
78 TIGR00960 3a0501s02 Type II (G 99.9 1.5E-21 3.3E-26 205.4 10.6 122 665-804 2-147 (216)
79 cd03223 ABCD_peroxisomal_ALDP 99.9 2.1E-21 4.6E-26 195.0 11.1 98 665-804 1-100 (166)
80 COG1122 CbiO ABC-type cobalt t 99.9 1.8E-21 3.8E-26 203.7 10.6 122 664-804 3-147 (235)
81 PRK13631 cbiO cobalt transport 99.8 4.3E-21 9.4E-26 212.4 12.9 128 663-804 20-185 (320)
82 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 3.9E-21 8.5E-26 202.5 11.4 124 665-804 1-149 (218)
83 cd03260 ABC_PstB_phosphate_tra 99.8 4.1E-21 8.9E-26 203.7 11.0 122 665-804 1-150 (227)
84 COG3638 ABC-type phosphate/pho 99.8 5.1E-21 1.1E-25 192.2 10.8 125 664-804 3-156 (258)
85 PRK13647 cbiO cobalt transport 99.8 4.2E-21 9.1E-26 208.9 10.9 122 664-804 4-147 (274)
86 cd03259 ABC_Carb_Solutes_like 99.8 4.3E-21 9.3E-26 201.4 10.4 120 665-804 1-139 (213)
87 COG1135 AbcC ABC-type metal io 99.8 5.1E-21 1.1E-25 199.4 10.6 125 665-804 2-150 (339)
88 cd03261 ABC_Org_Solvent_Resist 99.8 6.1E-21 1.3E-25 203.4 11.2 120 665-804 1-145 (235)
89 cd03293 ABC_NrtD_SsuB_transpor 99.8 5.9E-21 1.3E-25 201.4 11.0 124 665-804 1-140 (220)
90 cd03235 ABC_Metallic_Cations A 99.8 5.2E-21 1.1E-25 200.8 10.3 118 667-804 2-141 (213)
91 COG3840 ThiQ ABC-type thiamine 99.8 3.1E-21 6.8E-26 185.1 7.7 119 665-805 2-139 (231)
92 PRK13650 cbiO cobalt transport 99.8 6.5E-21 1.4E-25 208.0 11.2 124 664-804 4-149 (279)
93 COG1118 CysA ABC-type sulfate/ 99.8 4.5E-21 9.8E-26 199.2 9.2 120 665-804 3-146 (345)
94 PRK13637 cbiO cobalt transport 99.8 8.8E-21 1.9E-25 207.7 12.0 127 665-804 3-153 (287)
95 PRK13635 cbiO cobalt transport 99.8 1.1E-20 2.3E-25 206.1 12.5 123 664-804 5-149 (279)
96 PRK14269 phosphate ABC transpo 99.8 7.7E-21 1.7E-25 204.0 11.1 125 664-804 2-151 (246)
97 PRK13634 cbiO cobalt transport 99.8 8.4E-21 1.8E-25 208.2 11.5 126 665-804 3-154 (290)
98 PF00664 ABC_membrane: ABC tra 99.8 6.4E-18 1.4E-22 182.5 33.8 268 246-515 2-275 (275)
99 TIGR02673 FtsE cell division A 99.8 8E-21 1.7E-25 199.6 10.4 121 665-804 2-146 (214)
100 PRK11629 lolD lipoprotein tran 99.8 1.2E-20 2.6E-25 200.9 11.8 125 664-804 5-154 (233)
101 PRK11432 fbpC ferric transport 99.8 1.1E-20 2.4E-25 211.3 12.1 121 664-804 6-145 (351)
102 PRK10247 putative ABC transpor 99.8 1.8E-20 4E-25 198.2 13.0 123 663-804 6-146 (225)
103 PRK14242 phosphate transporter 99.8 1E-20 2.2E-25 204.0 11.2 126 663-804 5-158 (253)
104 PRK11247 ssuB aliphatic sulfon 99.8 2.1E-20 4.5E-25 201.0 13.3 122 663-804 11-142 (257)
105 PRK13643 cbiO cobalt transport 99.8 1.3E-20 2.8E-25 206.5 12.0 126 665-804 2-153 (288)
106 cd03292 ABC_FtsE_transporter F 99.8 9E-21 2E-25 199.2 10.3 121 665-804 1-145 (214)
107 TIGR02314 ABC_MetN D-methionin 99.8 1.1E-20 2.4E-25 210.1 11.3 124 665-804 2-149 (343)
108 PRK09452 potA putrescine/sperm 99.8 1.6E-20 3.4E-25 211.4 12.6 122 663-804 13-153 (375)
109 PRK11000 maltose/maltodextrin 99.8 1.5E-20 3.2E-25 212.4 12.0 121 664-804 3-142 (369)
110 PRK14237 phosphate transporter 99.8 2E-20 4.4E-25 203.0 12.6 128 661-804 17-172 (267)
111 PRK13646 cbiO cobalt transport 99.8 1.5E-20 3.3E-25 205.8 11.7 126 665-804 3-154 (286)
112 cd03301 ABC_MalK_N The N-termi 99.8 1.2E-20 2.5E-25 198.2 10.3 120 665-804 1-139 (213)
113 cd03263 ABC_subfamily_A The AB 99.8 1.4E-20 2.9E-25 198.7 10.7 122 665-804 1-142 (220)
114 cd03296 ABC_CysA_sulfate_impor 99.8 2E-20 4.3E-25 200.0 12.0 120 665-804 3-145 (239)
115 TIGR01186 proV glycine betaine 99.8 7.6E-21 1.6E-25 212.5 9.1 112 685-804 5-138 (363)
116 PRK13640 cbiO cobalt transport 99.8 2E-20 4.4E-25 204.5 12.2 123 664-804 5-152 (282)
117 TIGR03265 PhnT2 putative 2-ami 99.8 1.5E-20 3.3E-25 210.5 11.5 121 664-804 4-143 (353)
118 PRK13632 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 203.9 11.6 124 663-804 6-151 (271)
119 TIGR02315 ABC_phnC phosphonate 99.8 1.7E-20 3.7E-25 201.1 11.3 121 665-804 2-154 (243)
120 cd03225 ABC_cobalt_CbiO_domain 99.8 1.5E-20 3.2E-25 197.1 10.5 120 667-804 2-143 (211)
121 PRK14250 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 199.1 12.6 122 664-804 3-140 (241)
122 cd03268 ABC_BcrA_bacitracin_re 99.8 2.1E-20 4.4E-25 195.5 11.3 120 665-804 1-135 (208)
123 PRK10744 pstB phosphate transp 99.8 2.7E-20 6E-25 201.3 12.6 127 662-804 11-165 (260)
124 PRK14273 phosphate ABC transpo 99.8 2.6E-20 5.6E-25 201.0 12.2 126 663-804 6-159 (254)
125 TIGR00972 3a0107s01c2 phosphat 99.8 2.6E-20 5.5E-25 200.1 12.1 124 665-804 2-153 (247)
126 cd03219 ABC_Mj1267_LivG_branch 99.8 1.9E-20 4.2E-25 199.8 10.8 120 665-804 1-152 (236)
127 TIGR02211 LolD_lipo_ex lipopro 99.8 2.7E-20 5.8E-25 196.6 11.4 124 665-804 2-150 (221)
128 PRK13644 cbiO cobalt transport 99.8 2.9E-20 6.4E-25 202.3 12.0 121 665-804 2-145 (274)
129 cd03247 ABCC_cytochrome_bd The 99.8 2.7E-20 5.8E-25 189.6 10.8 95 665-804 1-107 (178)
130 TIGR03258 PhnT 2-aminoethylpho 99.8 2.4E-20 5.2E-25 209.2 11.5 122 663-804 4-146 (362)
131 cd03266 ABC_NatA_sodium_export 99.8 1.7E-20 3.6E-25 197.8 9.5 124 665-804 2-145 (218)
132 PRK10851 sulfate/thiosulfate t 99.8 3.4E-20 7.3E-25 207.8 12.5 120 665-804 3-145 (353)
133 PRK10584 putative ABC transpor 99.8 3.5E-20 7.5E-25 196.7 11.6 124 664-804 6-155 (228)
134 cd03269 ABC_putative_ATPase Th 99.8 2.3E-20 5.1E-25 195.4 10.1 120 665-804 1-137 (210)
135 PRK10908 cell division protein 99.8 3.2E-20 6.8E-25 196.2 11.1 121 665-804 2-146 (222)
136 cd03231 ABC_CcmA_heme_exporter 99.8 5E-20 1.1E-24 191.4 12.3 120 665-804 1-134 (201)
137 cd03224 ABC_TM1139_LivF_branch 99.8 3.4E-20 7.3E-25 196.0 11.1 121 665-804 1-141 (222)
138 PRK11153 metN DL-methionine tr 99.8 2.9E-20 6.2E-25 208.3 11.0 124 665-804 2-149 (343)
139 cd03298 ABC_ThiQ_thiamine_tran 99.8 5E-20 1.1E-24 193.1 12.0 118 665-804 1-137 (211)
140 cd03264 ABC_drug_resistance_li 99.8 2.8E-20 6E-25 195.0 10.1 119 665-804 1-139 (211)
141 PRK14249 phosphate ABC transpo 99.8 4.9E-20 1.1E-24 198.4 12.2 125 664-804 4-156 (251)
142 cd03265 ABC_DrrA DrrA is the A 99.8 2.5E-20 5.5E-25 196.6 9.7 120 665-804 1-140 (220)
143 PRK14235 phosphate transporter 99.8 4.5E-20 9.8E-25 200.3 11.8 127 662-804 17-172 (267)
144 PRK13651 cobalt transporter AT 99.8 5E-20 1.1E-24 202.8 12.1 126 665-804 3-174 (305)
145 cd03262 ABC_HisP_GlnQ_permease 99.8 3.3E-20 7.2E-25 194.8 10.2 120 665-804 1-144 (213)
146 cd03258 ABC_MetN_methionine_tr 99.8 3.9E-20 8.4E-25 197.0 10.8 124 665-804 2-149 (233)
147 cd03256 ABC_PhnC_transporter A 99.8 3.9E-20 8.4E-25 198.1 10.9 121 665-804 1-153 (241)
148 PRK14259 phosphate ABC transpo 99.8 6.8E-20 1.5E-24 199.0 12.7 126 663-804 12-163 (269)
149 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2E-20 4.3E-25 203.2 8.4 108 686-804 37-169 (269)
150 PRK13636 cbiO cobalt transport 99.8 5.8E-20 1.3E-24 200.9 12.0 122 664-804 5-150 (283)
151 cd03246 ABCC_Protease_Secretio 99.8 4.6E-20 1E-24 186.8 10.4 83 665-754 1-96 (173)
152 PRK13540 cytochrome c biogenes 99.8 8.9E-20 1.9E-24 189.4 12.4 120 665-804 2-136 (200)
153 PRK14274 phosphate ABC transpo 99.8 7E-20 1.5E-24 198.2 12.1 126 663-804 11-164 (259)
154 PRK11607 potG putrescine trans 99.8 5.8E-20 1.3E-24 207.2 11.9 122 663-804 18-158 (377)
155 TIGR01277 thiQ thiamine ABC tr 99.8 6.7E-20 1.5E-24 192.3 11.5 117 666-804 2-137 (213)
156 PRK14264 phosphate ABC transpo 99.8 7.3E-20 1.6E-24 202.1 12.4 126 663-804 44-209 (305)
157 PRK10575 iron-hydroxamate tran 99.8 7.7E-20 1.7E-24 198.4 12.2 122 663-804 10-156 (265)
158 cd03295 ABC_OpuCA_Osmoprotecti 99.8 4.3E-20 9.4E-25 197.7 10.0 123 665-804 1-144 (242)
159 PRK14266 phosphate ABC transpo 99.8 5.1E-20 1.1E-24 198.2 10.5 124 665-804 4-155 (250)
160 PRK14251 phosphate ABC transpo 99.8 5.8E-20 1.2E-24 198.0 10.8 125 664-804 4-156 (251)
161 TIGR02982 heterocyst_DevA ABC 99.8 6.2E-20 1.3E-24 193.6 10.8 124 665-804 2-150 (220)
162 PRK14252 phosphate ABC transpo 99.8 9.4E-20 2E-24 197.7 12.5 127 662-804 14-170 (265)
163 PRK14236 phosphate transporter 99.8 7E-20 1.5E-24 199.4 11.5 126 663-804 24-177 (272)
164 PRK14270 phosphate ABC transpo 99.8 8.4E-20 1.8E-24 196.6 12.0 125 664-804 4-156 (251)
165 PRK13652 cbiO cobalt transport 99.8 9.3E-20 2E-24 198.8 12.4 122 664-804 3-146 (277)
166 PRK14248 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 197.7 12.5 126 663-804 20-173 (268)
167 PRK13548 hmuV hemin importer A 99.8 1.3E-19 2.7E-24 195.8 13.0 123 665-807 3-146 (258)
168 PRK14240 phosphate transporter 99.8 9.7E-20 2.1E-24 196.1 12.0 125 664-804 3-155 (250)
169 PRK14268 phosphate ABC transpo 99.8 8.9E-20 1.9E-24 197.1 11.8 127 662-804 10-163 (258)
170 PRK13649 cbiO cobalt transport 99.8 7.8E-20 1.7E-24 200.1 11.4 126 665-804 3-154 (280)
171 PRK13639 cbiO cobalt transport 99.8 7.1E-20 1.5E-24 199.5 11.1 121 665-804 2-146 (275)
172 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 6.9E-20 1.5E-24 195.4 10.6 120 665-804 2-141 (236)
173 PRK13641 cbiO cobalt transport 99.8 9.8E-20 2.1E-24 199.6 12.1 126 665-804 3-154 (287)
174 PRK11248 tauB taurine transpor 99.8 9.8E-20 2.1E-24 196.1 11.9 120 665-804 2-137 (255)
175 cd03218 ABC_YhbG The ABC trans 99.8 5.2E-20 1.1E-24 196.0 9.6 120 665-804 1-142 (232)
176 PRK13633 cobalt transporter AT 99.8 8.2E-20 1.8E-24 199.6 11.2 127 664-804 4-153 (280)
177 PRK14239 phosphate transporter 99.8 9.2E-20 2E-24 196.6 11.4 125 664-804 5-157 (252)
178 PRK14245 phosphate ABC transpo 99.8 8.1E-20 1.8E-24 196.6 10.8 125 664-804 3-155 (250)
179 PRK14254 phosphate ABC transpo 99.8 1.2E-19 2.5E-24 198.5 12.1 126 663-804 38-189 (285)
180 PRK14271 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 198.0 11.8 126 663-804 20-172 (276)
181 TIGR01189 ccmA heme ABC export 99.8 7.9E-20 1.7E-24 189.5 10.2 120 665-804 1-136 (198)
182 TIGR03608 L_ocin_972_ABC putat 99.8 6.3E-20 1.4E-24 191.6 9.5 118 667-804 1-143 (206)
183 PRK14261 phosphate ABC transpo 99.8 1E-19 2.2E-24 196.2 11.4 125 664-804 6-158 (253)
184 PRK14243 phosphate transporter 99.8 1.2E-19 2.5E-24 196.7 11.7 125 664-804 10-160 (264)
185 PRK13538 cytochrome c biogenes 99.8 9.7E-20 2.1E-24 189.7 10.6 120 665-804 2-138 (204)
186 COG1127 Ttg2A ABC-type transpo 99.8 1.4E-19 3E-24 182.4 11.3 122 663-804 7-154 (263)
187 cd03233 ABC_PDR_domain1 The pl 99.8 1.1E-19 2.4E-24 188.8 10.9 109 664-804 3-127 (202)
188 PRK11831 putative ABC transpor 99.8 1E-19 2.3E-24 197.7 11.2 122 663-804 6-152 (269)
189 cd03257 ABC_NikE_OppD_transpor 99.8 8.1E-20 1.8E-24 194.0 9.9 125 665-804 2-154 (228)
190 PRK14238 phosphate transporter 99.8 1.3E-19 2.8E-24 197.1 11.6 126 663-804 23-176 (271)
191 PRK11231 fecE iron-dicitrate t 99.8 1.4E-19 3E-24 195.3 11.6 120 665-804 3-147 (255)
192 TIGR03410 urea_trans_UrtE urea 99.8 6E-20 1.3E-24 195.2 8.5 121 665-804 1-140 (230)
193 PRK11124 artP arginine transpo 99.8 1.4E-19 3.1E-24 193.8 11.4 120 665-804 3-150 (242)
194 cd03300 ABC_PotA_N PotA is an 99.8 9.6E-20 2.1E-24 193.7 10.0 120 665-804 1-139 (232)
195 PRK13648 cbiO cobalt transport 99.8 1.7E-19 3.7E-24 196.1 12.0 124 663-804 6-151 (269)
196 PRK09536 btuD corrinoid ABC tr 99.8 1.4E-19 2.9E-24 204.9 11.7 121 664-804 3-148 (402)
197 PF00005 ABC_tran: ABC transpo 99.8 5.9E-20 1.3E-24 178.7 7.6 105 689-806 1-119 (137)
198 PRK09493 glnQ glutamine ABC tr 99.8 1.4E-19 3E-24 193.6 11.1 120 665-804 2-145 (240)
199 PRK13642 cbiO cobalt transport 99.8 1.8E-19 3.9E-24 196.6 12.0 124 664-804 4-149 (277)
200 PRK09544 znuC high-affinity zi 99.8 2.3E-19 5E-24 192.5 12.5 121 664-804 4-129 (251)
201 PRK13645 cbiO cobalt transport 99.8 1.1E-19 2.3E-24 199.7 10.0 128 663-804 5-159 (289)
202 PRK11300 livG leucine/isoleuci 99.8 2E-19 4.4E-24 194.3 11.8 124 664-804 5-162 (255)
203 PRK14247 phosphate ABC transpo 99.8 2.2E-19 4.7E-24 193.3 12.0 125 664-804 3-155 (250)
204 TIGR01288 nodI ATP-binding ABC 99.8 1.6E-19 3.5E-24 199.5 11.2 121 664-804 4-144 (303)
205 PRK14253 phosphate ABC transpo 99.8 1.9E-19 4E-24 193.7 11.4 125 664-804 3-154 (249)
206 PRK14262 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 194.4 10.7 125 664-804 3-155 (250)
207 PRK14244 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 195.2 10.0 124 665-804 6-158 (251)
208 PRK13541 cytochrome c biogenes 99.8 2.1E-19 4.6E-24 185.7 11.2 119 665-804 2-132 (195)
209 TIGR00968 3a0106s01 sulfate AB 99.8 1.9E-19 4.2E-24 192.0 11.1 120 665-804 1-139 (237)
210 PRK10771 thiQ thiamine transpo 99.8 2.7E-19 5.9E-24 190.3 12.1 118 665-804 2-138 (232)
211 PRK14263 phosphate ABC transpo 99.8 2.4E-19 5.2E-24 193.7 11.8 126 663-804 7-158 (261)
212 TIGR03005 ectoine_ehuA ectoine 99.8 1.8E-19 3.9E-24 194.2 10.8 120 665-804 1-155 (252)
213 PRK10619 histidine/lysine/argi 99.8 2.1E-19 4.5E-24 194.2 11.1 123 663-804 4-161 (257)
214 TIGR03411 urea_trans_UrtD urea 99.8 2.4E-19 5.3E-24 192.0 11.6 120 665-804 3-152 (242)
215 PRK13537 nodulation ABC transp 99.8 2.1E-19 4.6E-24 198.2 11.3 122 663-804 6-147 (306)
216 PRK11264 putative amino-acid A 99.8 3.8E-19 8.2E-24 191.5 12.8 121 664-804 3-153 (250)
217 PRK13539 cytochrome c biogenes 99.8 3.3E-19 7.3E-24 186.0 11.9 120 665-804 3-136 (207)
218 TIGR03873 F420-0_ABC_ATP propo 99.8 2.4E-19 5.1E-24 193.7 11.1 120 665-804 2-146 (256)
219 PRK14256 phosphate ABC transpo 99.8 3.4E-19 7.3E-24 192.1 12.1 126 663-804 3-157 (252)
220 PRK14260 phosphate ABC transpo 99.8 2.9E-19 6.3E-24 193.3 11.6 125 664-804 7-159 (259)
221 cd03234 ABCG_White The White s 99.8 1.4E-19 3E-24 191.7 8.9 128 665-804 4-152 (226)
222 TIGR03740 galliderm_ABC gallid 99.8 2.8E-19 6.1E-24 189.0 11.0 120 665-804 1-133 (223)
223 TIGR01166 cbiO cobalt transpor 99.8 1.7E-19 3.6E-24 185.8 9.0 109 685-804 4-136 (190)
224 PRK10895 lipopolysaccharide AB 99.8 3.2E-19 7E-24 190.9 11.5 121 664-804 3-146 (241)
225 PRK10253 iron-enterobactin tra 99.8 2.8E-19 6.2E-24 193.9 11.2 122 663-804 6-152 (265)
226 PRK10070 glycine betaine trans 99.8 3E-19 6.5E-24 202.0 11.7 130 664-804 4-173 (400)
227 PRK14267 phosphate ABC transpo 99.8 3.2E-19 6.9E-24 192.4 11.4 125 664-804 4-158 (253)
228 cd03230 ABC_DR_subfamily_A Thi 99.8 3.2E-19 6.9E-24 180.7 10.7 82 665-755 1-95 (173)
229 PRK15056 manganese/iron transp 99.8 3.3E-19 7.2E-24 194.0 11.4 122 664-804 6-151 (272)
230 cd03228 ABCC_MRP_Like The MRP 99.8 3.6E-19 7.9E-24 179.9 10.4 83 665-754 1-96 (171)
231 PRK13543 cytochrome c biogenes 99.8 5.3E-19 1.2E-23 185.5 11.8 122 663-804 10-146 (214)
232 cd03299 ABC_ModC_like Archeal 99.8 3.8E-19 8.2E-24 189.5 10.6 119 665-804 1-138 (235)
233 PRK13638 cbiO cobalt transport 99.8 4E-19 8.6E-24 193.4 11.0 120 665-804 2-145 (271)
234 PRK13547 hmuV hemin importer A 99.8 5.4E-19 1.2E-23 191.7 12.0 123 665-807 2-157 (272)
235 COG1124 DppF ABC-type dipeptid 99.8 6.5E-19 1.4E-23 178.7 11.7 125 664-804 3-150 (252)
236 cd03229 ABC_Class3 This class 99.8 3.8E-19 8.3E-24 181.0 10.2 84 665-757 1-100 (178)
237 PRK11614 livF leucine/isoleuci 99.8 4.2E-19 9.2E-24 189.5 10.9 125 664-804 5-146 (237)
238 PRK14275 phosphate ABC transpo 99.8 4.2E-19 9.1E-24 194.4 11.0 126 663-804 38-191 (286)
239 PRK09984 phosphonate/organopho 99.8 4.7E-19 1E-23 192.0 11.2 121 664-804 4-161 (262)
240 cd03213 ABCG_EPDR ABCG transpo 99.8 3.8E-19 8.2E-24 183.5 9.8 91 664-757 3-106 (194)
241 PRK13536 nodulation factor exp 99.8 4.2E-19 9.1E-24 197.9 10.9 122 663-804 40-181 (340)
242 TIGR00955 3a01204 The Eye Pigm 99.8 1.7E-19 3.6E-24 217.9 8.2 119 685-804 37-175 (617)
243 PRK11144 modC molybdate transp 99.8 6.7E-19 1.4E-23 198.0 12.4 117 665-804 2-137 (352)
244 TIGR03522 GldA_ABC_ATP gliding 99.8 3.8E-19 8.3E-24 196.1 10.1 120 665-804 3-142 (301)
245 PRK14265 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 190.0 13.2 126 663-804 19-170 (274)
246 PRK14255 phosphate ABC transpo 99.8 7.4E-19 1.6E-23 189.5 11.3 125 664-804 5-157 (252)
247 TIGR03415 ABC_choXWV_ATP choli 99.8 3.7E-19 8.1E-24 199.8 9.2 109 685-804 36-173 (382)
248 TIGR02324 CP_lyasePhnL phospho 99.8 9.1E-19 2E-23 185.3 11.4 128 665-804 2-158 (224)
249 COG0410 LivF ABC-type branched 99.8 4E-19 8.7E-24 179.0 8.1 127 664-804 3-145 (237)
250 PRK14258 phosphate ABC transpo 99.8 1E-18 2.2E-23 189.1 11.9 125 664-804 7-159 (261)
251 TIGR02769 nickel_nikE nickel i 99.8 1.1E-18 2.4E-23 189.3 12.0 130 665-804 3-159 (265)
252 TIGR01978 sufC FeS assembly AT 99.8 8.2E-19 1.8E-23 188.2 10.8 84 665-757 1-101 (243)
253 COG4525 TauB ABC-type taurine 99.8 5.1E-19 1.1E-23 171.7 7.9 125 665-807 4-144 (259)
254 PRK10418 nikD nickel transport 99.8 1.8E-18 3.9E-23 186.5 13.1 123 664-804 4-149 (254)
255 PRK14241 phosphate transporter 99.8 1E-18 2.2E-23 188.9 11.1 125 664-804 4-157 (258)
256 PRK15079 oligopeptide ABC tran 99.8 1.2E-18 2.6E-23 193.7 11.9 132 663-804 7-170 (331)
257 PRK14272 phosphate ABC transpo 99.8 1.3E-18 2.8E-23 187.6 11.0 125 664-804 4-157 (252)
258 cd03232 ABC_PDR_domain2 The pl 99.8 1.1E-18 2.5E-23 179.7 9.5 89 664-757 3-103 (192)
259 PRK14246 phosphate ABC transpo 99.8 2.5E-18 5.5E-23 185.3 12.3 126 663-804 9-162 (257)
260 PRK11701 phnK phosphonate C-P 99.8 4.8E-18 1E-22 183.7 13.3 125 664-804 6-160 (258)
261 TIGR01188 drrA daunorubicin re 99.8 1.4E-18 3.1E-23 191.8 8.9 108 686-804 6-133 (302)
262 PRK15112 antimicrobial peptide 99.7 4.1E-18 8.9E-23 185.0 12.1 131 664-804 4-158 (267)
263 PRK15439 autoinducer 2 ABC tra 99.7 4.5E-18 9.7E-23 201.6 13.4 121 664-804 11-149 (510)
264 cd03297 ABC_ModC_molybdenum_tr 99.7 3E-18 6.6E-23 180.0 10.5 113 669-804 5-140 (214)
265 TIGR02142 modC_ABC molybdenum 99.7 3.3E-18 7.3E-23 192.6 11.2 114 669-804 4-140 (354)
266 PRK11288 araG L-arabinose tran 99.7 5.4E-18 1.2E-22 200.7 12.8 121 664-804 4-149 (501)
267 COG1131 CcmA ABC-type multidru 99.7 5.4E-18 1.2E-22 185.2 11.8 122 664-804 4-145 (293)
268 PRK10762 D-ribose transporter 99.7 5.5E-18 1.2E-22 200.7 12.5 121 664-804 4-150 (501)
269 PRK10419 nikE nickel transport 99.7 5.6E-18 1.2E-22 183.9 11.3 131 664-804 3-160 (268)
270 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.8E-18 6E-23 205.3 9.6 86 664-757 4-92 (552)
271 cd03237 ABC_RNaseL_inhibitor_d 99.7 4.1E-18 8.9E-23 182.0 9.9 108 686-804 7-124 (246)
272 cd03215 ABC_Carb_Monos_II This 99.7 4.6E-18 1E-22 173.7 9.9 81 664-757 4-102 (182)
273 COG4559 ABC-type hemin transpo 99.7 4E-18 8.8E-23 168.0 8.9 125 665-805 2-145 (259)
274 PRK11308 dppF dipeptide transp 99.7 7.7E-18 1.7E-22 187.1 12.3 131 664-804 5-163 (327)
275 PRK11819 putative ABC transpor 99.7 7.2E-18 1.6E-22 201.8 13.0 86 664-757 6-94 (556)
276 PRK13549 xylose transporter AT 99.7 7.8E-18 1.7E-22 199.6 12.9 121 664-804 5-152 (506)
277 PRK09700 D-allose transporter 99.7 6.2E-18 1.3E-22 200.8 11.6 121 664-804 5-154 (510)
278 KOG0064|consensus 99.7 4.1E-15 8.8E-20 163.7 32.2 134 663-806 480-623 (728)
279 PRK13546 teichoic acids export 99.7 9.3E-18 2E-22 181.1 11.7 130 664-804 4-152 (264)
280 PRK11022 dppD dipeptide transp 99.7 1.1E-17 2.3E-22 186.1 11.2 128 664-804 3-162 (326)
281 PRK09473 oppD oligopeptide tra 99.7 1.6E-17 3.4E-22 184.9 12.6 132 663-804 11-170 (330)
282 COG4136 ABC-type uncharacteriz 99.7 7.4E-18 1.6E-22 156.6 8.1 122 665-806 3-145 (213)
283 TIGR01184 ntrCD nitrate transp 99.7 1E-17 2.2E-22 177.8 10.2 105 689-804 1-123 (230)
284 COG4604 CeuD ABC-type enteroch 99.7 1.3E-18 2.8E-23 169.3 2.7 120 665-804 2-144 (252)
285 TIGR02323 CP_lyasePhnK phospho 99.7 2.8E-17 6E-22 177.3 13.1 125 664-804 3-157 (253)
286 CHL00131 ycf16 sulfate ABC tra 99.7 2.9E-17 6.2E-22 177.2 12.8 85 664-757 7-108 (252)
287 TIGR02633 xylG D-xylose ABC tr 99.7 2.2E-17 4.8E-22 195.7 12.8 121 665-804 2-150 (500)
288 cd03267 ABC_NatA_like Similar 99.7 7.1E-18 1.5E-22 179.7 7.6 109 685-804 33-162 (236)
289 PLN03211 ABC transporter G-25; 99.7 9.2E-18 2E-22 202.7 8.8 113 685-804 80-215 (659)
290 PRK15093 antimicrobial peptide 99.7 2E-17 4.4E-22 184.5 10.9 128 664-804 3-167 (330)
291 PRK10982 galactose/methyl gala 99.7 2.3E-17 5E-22 195.1 11.8 117 668-804 2-143 (491)
292 TIGR00956 3a01205 Pleiotropic 99.7 2.5E-17 5.3E-22 213.9 12.5 129 664-804 759-910 (1394)
293 PRK15064 ABC transporter ATP-b 99.7 3.4E-17 7.4E-22 195.3 12.2 85 665-758 2-89 (530)
294 cd03217 ABC_FeS_Assembly ABC-t 99.7 2.8E-17 6.1E-22 170.5 9.7 81 665-754 1-98 (200)
295 PRK10261 glutathione transport 99.7 4.1E-17 8.9E-22 197.4 12.3 129 663-804 11-177 (623)
296 PRK10261 glutathione transport 99.7 3.4E-17 7.4E-22 198.1 11.3 131 663-804 312-472 (623)
297 PRK13545 tagH teichoic acids e 99.7 6.2E-17 1.3E-21 184.9 12.5 125 663-804 20-152 (549)
298 PRK15064 ABC transporter ATP-b 99.7 6.9E-17 1.5E-21 192.7 13.1 123 663-804 318-447 (530)
299 COG4148 ModC ABC-type molybdat 99.7 1.9E-17 4.1E-22 169.4 7.0 103 691-804 16-137 (352)
300 COG4181 Predicted ABC-type tra 99.7 4E-17 8.6E-22 155.3 8.6 126 664-805 6-156 (228)
301 PRK03695 vitamin B12-transport 99.7 6.3E-17 1.4E-21 173.7 11.1 108 688-807 11-138 (248)
302 PRK11819 putative ABC transpor 99.7 8E-17 1.7E-21 192.8 13.0 123 663-804 323-454 (556)
303 PRK09580 sufC cysteine desulfu 99.7 5.9E-17 1.3E-21 174.3 10.6 81 665-754 2-99 (248)
304 TIGR02770 nickel_nikD nickel i 99.7 3.5E-17 7.5E-22 173.8 8.7 109 688-804 1-134 (230)
305 COG1137 YhbG ABC-type (unclass 99.7 4.9E-18 1.1E-22 165.9 1.7 127 664-804 4-148 (243)
306 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 2.5E-17 5.4E-22 174.0 7.1 120 665-804 23-151 (224)
307 TIGR03269 met_CoM_red_A2 methy 99.7 5.2E-17 1.1E-21 193.4 10.5 132 663-804 278-436 (520)
308 PRK09700 D-allose transporter 99.7 4.8E-17 1E-21 193.3 10.0 84 664-758 265-366 (510)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.2E-16 2.5E-21 191.4 13.4 123 663-804 321-452 (552)
310 PRK10938 putative molybdenum t 99.7 5.7E-17 1.2E-21 191.7 10.6 119 665-804 4-144 (490)
311 TIGR03269 met_CoM_red_A2 methy 99.7 6.2E-17 1.3E-21 192.7 10.7 120 665-804 1-177 (520)
312 PRK13549 xylose transporter AT 99.7 5.4E-17 1.2E-21 192.5 9.8 126 663-804 258-414 (506)
313 cd03216 ABC_Carb_Monos_I This 99.7 1E-16 2.3E-21 160.5 9.1 61 665-734 1-61 (163)
314 PRK15134 microcin C ABC transp 99.7 1E-16 2.2E-21 191.1 10.5 131 663-804 274-434 (529)
315 cd03214 ABC_Iron-Siderophores_ 99.7 6E-17 1.3E-21 165.1 6.8 105 666-804 1-106 (180)
316 PRK13409 putative ATPase RIL; 99.7 1.6E-16 3.5E-21 189.5 11.1 121 663-804 339-462 (590)
317 TIGR01257 rim_protein retinal- 99.7 1.8E-16 3.8E-21 206.0 11.9 124 663-804 927-1070(2272)
318 PRK10535 macrolide transporter 99.7 2.1E-16 4.5E-21 191.9 11.9 125 664-804 4-153 (648)
319 PLN03073 ABC transporter F fam 99.7 3E-16 6.5E-21 190.5 13.2 123 663-804 507-636 (718)
320 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.9E-16 4E-21 155.1 9.1 68 665-741 1-70 (144)
321 TIGR02633 xylG D-xylose ABC tr 99.7 1.3E-16 2.9E-21 189.0 9.8 125 664-804 257-412 (500)
322 PRK15177 Vi polysaccharide exp 99.7 6.6E-17 1.4E-21 169.2 6.4 107 688-804 2-113 (213)
323 PRK15134 microcin C ABC transp 99.7 2.6E-16 5.7E-21 187.6 11.8 128 664-804 5-165 (529)
324 PRK11147 ABC transporter ATPas 99.7 4E-16 8.7E-21 189.4 13.2 123 663-804 318-449 (635)
325 TIGR03771 anch_rpt_ABC anchore 99.6 2.8E-16 6.1E-21 166.0 8.8 100 694-804 1-122 (223)
326 TIGR01257 rim_protein retinal- 99.6 4.5E-16 9.7E-21 202.3 11.8 124 663-804 1936-2079(2272)
327 PRK10938 putative molybdenum t 99.6 2.8E-16 6.1E-21 185.8 9.1 123 663-804 259-410 (490)
328 cd03236 ABC_RNaseL_inhibitor_d 99.6 2.9E-16 6.2E-21 168.5 8.0 116 669-804 5-148 (255)
329 PRK11288 araG L-arabinose tran 99.6 6.3E-16 1.4E-20 183.1 10.1 118 664-804 257-405 (501)
330 PRK10636 putative ABC transpor 99.6 1.5E-15 3.2E-20 184.1 13.0 122 663-804 311-439 (638)
331 COG1101 PhnK ABC-type uncharac 99.6 4.6E-16 1E-20 153.9 6.1 121 684-804 17-157 (263)
332 PRK10762 D-ribose transporter 99.6 8.5E-16 1.8E-20 182.1 9.4 117 664-804 257-404 (501)
333 PRK10636 putative ABC transpor 99.6 2.6E-15 5.6E-20 181.9 13.4 82 665-755 2-85 (638)
334 COG1123 ATPase components of v 99.6 2.5E-15 5.3E-20 171.2 12.0 127 664-804 5-163 (539)
335 PLN03140 ABC transporter G fam 99.6 3.6E-15 7.8E-20 193.1 14.1 135 663-804 866-1028(1470)
336 COG1123 ATPase components of v 99.6 2.5E-15 5.3E-20 171.2 11.1 132 662-804 278-438 (539)
337 COG4608 AppF ABC-type oligopep 99.6 1.6E-15 3.5E-20 157.8 8.7 114 664-805 4-119 (268)
338 COG0444 DppD ABC-type dipeptid 99.6 2.5E-15 5.5E-20 159.6 10.0 124 665-804 2-162 (316)
339 COG4175 ProV ABC-type proline/ 99.6 1.8E-15 4E-20 157.7 7.7 108 688-806 43-175 (386)
340 cd03222 ABC_RNaseL_inhibitor T 99.6 1.8E-15 3.9E-20 152.5 7.3 66 668-743 4-70 (177)
341 PRK15439 autoinducer 2 ABC tra 99.6 2.6E-15 5.7E-20 178.0 9.1 117 664-804 268-412 (510)
342 PRK10982 galactose/methyl gala 99.6 4.8E-15 1E-19 175.4 10.3 121 663-804 249-400 (491)
343 COG0411 LivG ABC-type branched 99.6 2.8E-15 6.1E-20 152.5 5.9 120 665-804 5-158 (250)
344 PRK11147 ABC transporter ATPas 99.5 1.6E-14 3.5E-19 175.4 12.7 83 664-755 3-88 (635)
345 COG1134 TagH ABC-type polysacc 99.5 1.1E-14 2.4E-19 148.5 9.2 109 685-804 39-156 (249)
346 COG3845 ABC-type uncharacteriz 99.5 1.1E-14 2.4E-19 161.2 9.7 122 663-804 3-149 (501)
347 cd00267 ABC_ATPase ABC (ATP-bi 99.5 1.1E-14 2.4E-19 145.1 8.8 59 667-734 2-60 (157)
348 PLN03140 ABC transporter G fam 99.5 7.6E-15 1.6E-19 190.1 9.1 120 685-804 177-345 (1470)
349 PRK13409 putative ATPase RIL; 99.5 5.9E-15 1.3E-19 176.2 7.2 114 669-804 78-221 (590)
350 TIGR01187 potA spermidine/putr 99.5 7.8E-15 1.7E-19 163.4 7.3 90 704-804 1-109 (325)
351 TIGR00956 3a01205 Pleiotropic 99.5 1E-14 2.2E-19 189.7 9.4 113 685-804 73-218 (1394)
352 COG1129 MglA ABC-type sugar tr 99.5 4.1E-14 8.9E-19 160.3 12.8 124 663-804 7-154 (500)
353 COG4555 NatA ABC-type Na+ tran 99.5 7.8E-15 1.7E-19 143.8 5.7 121 665-804 2-142 (245)
354 COG0488 Uup ATPase components 99.5 2.6E-14 5.6E-19 166.2 10.8 87 664-759 3-92 (530)
355 cd03238 ABC_UvrA The excision 99.5 1.8E-14 3.8E-19 145.2 8.0 84 685-806 7-98 (176)
356 COG0488 Uup ATPase components 99.5 5.1E-14 1.1E-18 163.8 11.8 125 662-804 319-448 (530)
357 COG4161 ArtP ABC-type arginine 99.5 2.3E-14 4.9E-19 135.0 5.7 121 664-804 2-150 (242)
358 COG4133 CcmA ABC-type transpor 99.5 3.3E-14 7E-19 138.5 6.1 111 685-806 14-141 (209)
359 COG1119 ModF ABC-type molybden 99.5 9.1E-15 2E-19 148.8 2.0 125 663-804 30-180 (257)
360 KOG0061|consensus 99.5 1.6E-13 3.4E-18 164.4 12.8 131 663-804 24-179 (613)
361 COG4598 HisP ABC-type histidin 99.5 3.6E-14 7.9E-19 136.1 4.5 122 663-804 5-161 (256)
362 cd00820 PEPCK_HprK Phosphoenol 99.4 1.2E-13 2.7E-18 125.2 6.2 63 686-756 2-77 (107)
363 COG4674 Uncharacterized ABC-ty 99.4 1.5E-13 3.3E-18 134.0 6.7 121 664-804 5-156 (249)
364 COG4172 ABC-type uncharacteriz 99.4 6.8E-13 1.5E-17 142.5 12.2 130 663-804 275-435 (534)
365 COG4778 PhnL ABC-type phosphon 99.4 3E-13 6.4E-18 128.9 4.5 57 686-742 24-101 (235)
366 COG4167 SapF ABC-type antimicr 99.4 9.2E-13 2E-17 126.9 7.5 109 687-805 27-159 (267)
367 COG0396 sufC Cysteine desulfur 99.4 3.4E-12 7.3E-17 128.6 10.5 123 665-804 4-153 (251)
368 PLN03073 ABC transporter F fam 99.3 3.2E-12 6.9E-17 155.7 11.8 79 663-753 176-254 (718)
369 COG4172 ABC-type uncharacteriz 99.3 4.4E-12 9.6E-17 136.4 9.5 126 663-804 5-166 (534)
370 KOG0927|consensus 99.3 3.2E-12 6.9E-17 142.4 7.6 125 662-804 387-518 (614)
371 COG4152 ABC-type uncharacteriz 99.2 6.1E-12 1.3E-16 127.2 4.0 125 664-804 2-139 (300)
372 cd03278 ABC_SMC_barmotin Barmo 99.2 1.1E-11 2.3E-16 128.0 5.2 94 690-808 14-126 (197)
373 COG4107 PhnK ABC-type phosphon 99.1 8.4E-11 1.8E-15 112.6 7.0 127 664-804 6-160 (258)
374 cd03271 ABC_UvrA_II The excisi 99.1 1E-10 2.3E-15 125.0 7.7 34 687-720 9-42 (261)
375 COG4586 ABC-type uncharacteriz 99.1 1.8E-11 3.8E-16 125.9 1.2 50 686-735 37-86 (325)
376 cd03270 ABC_UvrA_I The excisio 99.1 1.6E-10 3.5E-15 122.2 8.5 32 685-716 7-38 (226)
377 KOG0065|consensus 99.1 2.8E-10 6E-15 139.5 10.7 114 684-804 802-938 (1391)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.0 1.8E-10 4E-15 123.5 5.7 32 686-722 15-46 (243)
379 KOG0066|consensus 99.0 3.5E-10 7.5E-15 122.2 6.3 122 663-804 585-713 (807)
380 KOG2355|consensus 99.0 6.4E-10 1.4E-14 109.6 7.1 122 662-804 11-156 (291)
381 KOG0059|consensus 99.0 6E-10 1.3E-14 139.6 7.8 123 663-804 563-707 (885)
382 cd03279 ABC_sbcCD SbcCD and ot 98.9 1.2E-09 2.6E-14 114.6 4.4 116 664-807 5-135 (213)
383 cd03240 ABC_Rad50 The catalyti 98.9 2.4E-09 5.1E-14 111.3 5.7 89 693-805 17-125 (204)
384 KOG0065|consensus 98.8 2.4E-09 5.2E-14 131.5 5.9 120 685-804 127-269 (1391)
385 cd03275 ABC_SMC1_euk Eukaryoti 98.8 1.7E-09 3.6E-14 116.2 3.0 108 700-807 23-167 (247)
386 cd03273 ABC_SMC2_euk Eukaryoti 98.7 3.4E-09 7.4E-14 114.1 2.6 109 699-807 25-178 (251)
387 COG3845 ABC-type uncharacteriz 98.7 2.7E-08 5.8E-13 111.2 9.2 131 662-804 255-412 (501)
388 COG4138 BtuD ABC-type cobalami 98.7 1E-08 2.3E-13 98.6 4.3 107 688-804 14-134 (248)
389 TIGR00101 ureG urease accessor 98.7 4.7E-09 1E-13 108.4 1.1 99 701-799 3-107 (199)
390 cd03274 ABC_SMC4_euk Eukaryoti 98.7 1.4E-09 3E-14 113.7 -3.6 113 685-807 16-139 (212)
391 KOG0062|consensus 98.6 2.5E-08 5.3E-13 111.3 5.4 124 662-804 360-491 (582)
392 cd01128 rho_factor Transcripti 98.6 2.5E-08 5.5E-13 106.0 4.9 109 694-805 11-147 (249)
393 COG1245 Predicted ATPase, RNas 98.6 6.5E-08 1.4E-12 106.3 7.0 105 688-804 351-464 (591)
394 COG2401 ABC-type ATPase fused 98.6 5.6E-08 1.2E-12 105.4 6.2 113 685-807 395-519 (593)
395 TIGR03238 dnd_assoc_3 dnd syst 98.6 4.3E-08 9.3E-13 110.6 4.9 48 686-735 19-67 (504)
396 PRK00349 uvrA excinuclease ABC 98.6 4.7E-08 1E-12 121.4 4.9 33 688-720 624-656 (943)
397 COG1129 MglA ABC-type sugar tr 98.5 1.3E-07 2.7E-12 108.1 7.2 111 688-804 274-410 (500)
398 cd03239 ABC_SMC_head The struc 98.5 4.6E-08 9.9E-13 99.3 2.7 84 700-807 23-106 (178)
399 TIGR00630 uvra excinuclease AB 98.4 4.3E-07 9.2E-12 112.8 8.6 43 664-720 612-654 (924)
400 TIGR00767 rho transcription te 98.4 8.7E-07 1.9E-11 98.7 9.5 70 663-743 129-209 (415)
401 PRK00635 excinuclease ABC subu 98.3 4.6E-07 1E-11 117.7 6.6 30 688-717 610-639 (1809)
402 PRK12369 putative transporter; 98.3 0.0028 6.1E-08 70.4 34.2 220 304-540 83-320 (326)
403 KOG0927|consensus 98.3 9.7E-07 2.1E-11 99.4 6.6 59 663-730 74-132 (614)
404 cd03276 ABC_SMC6_euk Eukaryoti 98.2 1.4E-06 3E-11 90.2 6.2 32 689-721 12-43 (198)
405 cd01130 VirB11-like_ATPase Typ 98.2 1E-06 2.2E-11 90.3 4.7 47 688-734 14-60 (186)
406 PRK11098 microcin B17 transpor 98.2 0.0055 1.2E-07 69.5 34.7 214 306-541 160-395 (409)
407 PF13748 ABC_membrane_3: ABC t 98.2 0.0033 7.1E-08 64.9 28.9 200 235-459 2-204 (237)
408 PF06472 ABC_membrane_2: ABC t 98.2 0.0021 4.5E-08 70.4 29.6 199 249-449 33-237 (281)
409 PRK01889 GTPase RsgA; Reviewed 98.1 3E-06 6.6E-11 95.5 5.3 87 689-775 185-286 (356)
410 cd03283 ABC_MutS-like MutS-lik 98.1 2E-06 4.3E-11 89.0 2.9 115 685-809 13-131 (199)
411 PRK00635 excinuclease ABC subu 98.1 7.5E-06 1.6E-10 106.7 8.8 34 687-720 1504-1537(1809)
412 TIGR02524 dot_icm_DotB Dot/Icm 98.0 3.9E-06 8.5E-11 94.3 3.7 108 697-804 132-268 (358)
413 PRK06002 fliI flagellum-specif 98.0 2.5E-05 5.4E-10 89.1 9.8 61 663-732 138-198 (450)
414 TIGR00235 udk uridine kinase. 97.9 7E-06 1.5E-10 85.7 4.0 44 697-748 4-47 (207)
415 cd03280 ABC_MutS2 MutS2 homolo 97.9 7.6E-06 1.6E-10 84.9 4.0 32 689-720 17-49 (200)
416 cd01131 PilT Pilus retraction 97.9 1.1E-05 2.4E-10 83.4 5.1 73 701-773 3-97 (198)
417 KOG0062|consensus 97.9 1.8E-05 3.8E-10 89.0 6.7 120 663-804 79-207 (582)
418 cd03277 ABC_SMC5_euk Eukaryoti 97.9 1.6E-05 3.5E-10 83.2 5.3 31 690-721 15-45 (213)
419 COG0178 UvrA Excinuclease ATPa 97.9 3.2E-05 6.8E-10 91.4 8.0 31 687-717 615-645 (935)
420 PRK05480 uridine/cytidine kina 97.8 3.5E-05 7.6E-10 80.6 6.3 65 697-769 4-75 (209)
421 PRK00300 gmk guanylate kinase; 97.7 1.6E-05 3.4E-10 82.9 2.9 60 697-759 3-84 (205)
422 PF00664 ABC_membrane: ABC tra 97.7 0.00012 2.6E-09 78.5 9.9 61 887-947 65-125 (275)
423 PRK07196 fliI flagellum-specif 97.7 3.4E-05 7.3E-10 88.0 5.6 70 686-756 143-235 (434)
424 COG1245 Predicted ATPase, RNas 97.7 1.5E-05 3.3E-10 88.1 2.5 106 685-804 87-222 (591)
425 TIGR00958 3a01208 Conjugate Tr 97.7 0.00021 4.6E-09 88.7 12.8 121 823-947 165-285 (711)
426 TIGR02858 spore_III_AA stage I 97.7 2.5E-05 5.5E-10 84.2 4.0 35 700-734 112-146 (270)
427 PRK06995 flhF flagellar biosyn 97.7 1E-05 2.2E-10 93.4 0.7 99 689-794 246-345 (484)
428 PF13555 AAA_29: P-loop contai 97.7 5.3E-05 1.1E-09 61.7 4.1 32 691-722 14-46 (62)
429 TIGR02788 VirB11 P-type DNA tr 97.7 4.4E-05 9.5E-10 84.7 5.0 42 692-733 137-178 (308)
430 PRK15494 era GTPase Era; Provi 97.6 4.7E-05 1E-09 85.6 4.0 55 661-723 15-76 (339)
431 cd03242 ABC_RecF RecF is a rec 97.6 0.00013 2.7E-09 79.6 7.0 31 689-720 12-42 (270)
432 PRK10790 putative multidrug tr 97.5 0.00076 1.6E-08 82.2 13.8 118 823-945 27-147 (592)
433 PRK07721 fliI flagellum-specif 97.5 0.00011 2.4E-09 84.5 5.9 47 685-732 145-191 (438)
434 cd03287 ABC_MSH3_euk MutS3 hom 97.5 7.9E-05 1.7E-09 78.2 4.0 58 685-742 17-77 (222)
435 cd03284 ABC_MutS1 MutS1 homolo 97.4 0.00018 3.8E-09 75.5 4.9 72 685-759 17-91 (216)
436 cd03227 ABC_Class2 ABC-type Cl 97.3 0.00013 2.7E-09 73.1 2.9 36 694-729 16-51 (162)
437 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.00017 3.7E-09 74.9 3.7 38 685-722 15-52 (204)
438 KOG0058|consensus 97.3 0.0016 3.6E-08 76.9 11.8 84 866-949 191-274 (716)
439 PRK08149 ATP synthase SpaL; Va 97.3 0.00025 5.3E-09 80.9 5.0 41 686-727 139-179 (428)
440 PLN02796 D-glycerate 3-kinase 97.3 8.5E-05 1.8E-09 81.8 1.2 49 686-734 79-138 (347)
441 PF02463 SMC_N: RecF/RecN/SMC 97.3 0.00019 4E-09 75.7 3.4 32 690-722 16-50 (220)
442 KOG0063|consensus 97.2 0.00066 1.4E-08 74.8 7.5 109 685-804 348-465 (592)
443 TIGR02203 MsbA_lipidA lipid A 97.2 0.0021 4.6E-08 78.0 12.7 123 821-947 16-138 (571)
444 PRK10733 hflB ATP-dependent me 97.2 2.7E-05 5.9E-10 94.7 -4.0 29 695-725 183-211 (644)
445 PRK13851 type IV secretion sys 97.2 0.00049 1.1E-08 76.9 6.1 41 694-734 157-197 (344)
446 cd02023 UMPK Uridine monophosp 97.2 0.00044 9.5E-09 71.6 5.2 42 701-750 1-42 (198)
447 PRK07594 type III secretion sy 97.2 0.00033 7.2E-09 80.0 4.6 49 685-734 142-190 (433)
448 cd01136 ATPase_flagellum-secre 97.2 0.00038 8.2E-09 76.8 4.9 45 685-730 56-100 (326)
449 cd02025 PanK Pantothenate kina 97.2 0.00045 9.7E-09 72.7 5.2 70 701-774 1-76 (220)
450 PF03193 DUF258: Protein of un 97.1 0.00035 7.5E-09 68.9 3.7 35 698-732 34-68 (161)
451 cd03243 ABC_MutS_homologs The 97.1 0.00018 3.9E-09 74.8 1.7 55 687-743 19-76 (202)
452 PRK09825 idnK D-gluconate kina 97.1 0.00037 8.1E-09 70.6 3.8 33 698-734 2-34 (176)
453 TIGR02546 III_secr_ATP type II 97.1 0.00064 1.4E-08 78.2 6.0 47 685-732 132-178 (422)
454 PRK05688 fliI flagellum-specif 97.1 0.00028 6.1E-09 80.7 2.9 91 685-779 155-254 (451)
455 PLN02318 phosphoribulokinase/u 97.1 0.00038 8.3E-09 81.1 3.9 54 700-754 66-126 (656)
456 PRK09270 nucleoside triphospha 97.1 0.00048 1E-08 73.1 4.5 34 698-731 32-65 (229)
457 PRK09862 putative ATP-dependen 97.0 0.00057 1.2E-08 79.9 4.8 49 686-734 197-245 (506)
458 PTZ00035 Rad51 protein; Provis 97.0 0.00027 5.9E-09 79.0 1.5 75 695-769 114-202 (337)
459 TIGR01194 cyc_pep_trnsptr cycl 97.0 0.0081 1.8E-07 72.5 14.3 108 821-937 20-127 (555)
460 PRK10078 ribose 1,5-bisphospho 97.0 0.00052 1.1E-08 70.3 3.4 27 699-725 2-28 (186)
461 PRK00349 uvrA excinuclease ABC 97.0 0.00036 7.9E-09 87.4 2.4 29 688-716 15-43 (943)
462 TIGR03497 FliI_clade2 flagella 97.0 0.00085 1.8E-08 76.7 5.2 45 686-731 125-169 (413)
463 PRK03846 adenylylsulfate kinas 97.0 0.0005 1.1E-08 71.2 3.1 38 697-734 22-60 (198)
464 PRK14722 flhF flagellar biosyn 97.0 0.00023 5E-09 79.9 0.6 63 686-754 124-186 (374)
465 TIGR00630 uvra excinuclease AB 97.0 0.00037 7.9E-09 87.2 2.4 29 688-716 11-39 (924)
466 PRK09099 type III secretion sy 96.9 0.00089 1.9E-08 76.8 5.1 47 685-732 150-196 (441)
467 TIGR01193 bacteriocin_ABC ABC- 96.9 0.0079 1.7E-07 75.0 14.0 126 805-936 143-268 (708)
468 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.00094 2E-08 73.3 5.1 67 689-756 152-239 (287)
469 TIGR03498 FliI_clade3 flagella 96.9 0.0007 1.5E-08 77.3 3.9 46 687-733 129-174 (418)
470 PF10662 PduV-EutP: Ethanolami 96.9 0.00067 1.5E-08 65.3 3.2 24 700-723 2-25 (143)
471 TIGR02857 CydD thiol reductant 96.9 0.0073 1.6E-07 72.6 12.7 78 865-942 46-123 (529)
472 PRK10522 multidrug transporter 96.9 0.013 2.7E-07 70.8 14.6 68 869-936 54-121 (547)
473 cd03285 ABC_MSH2_euk MutS2 hom 96.9 0.001 2.2E-08 70.1 4.4 36 685-720 16-51 (222)
474 TIGR03263 guanyl_kin guanylate 96.8 0.0008 1.7E-08 68.4 3.4 27 699-725 1-27 (180)
475 PRK08472 fliI flagellum-specif 96.8 0.00093 2E-08 76.4 4.2 45 686-731 145-189 (434)
476 COG4170 SapD ABC-type antimicr 96.8 0.0014 3.1E-08 65.5 4.8 59 686-745 20-100 (330)
477 TIGR01026 fliI_yscN ATPase Fli 96.8 0.00085 1.8E-08 77.3 3.8 44 686-730 151-194 (440)
478 PRK00889 adenylylsulfate kinas 96.8 0.0018 3.8E-08 65.7 5.7 52 697-760 2-53 (175)
479 PRK06315 type III secretion sy 96.8 0.0012 2.6E-08 75.8 4.7 88 687-775 153-277 (442)
480 PRK07960 fliI flagellum-specif 96.8 0.0013 2.9E-08 75.0 5.2 41 694-734 170-213 (455)
481 TIGR00554 panK_bact pantothena 96.8 0.0021 4.5E-08 70.1 6.4 49 700-754 63-113 (290)
482 PRK07261 topology modulation p 96.8 0.00051 1.1E-08 69.3 1.3 24 701-724 2-25 (171)
483 cd00879 Sar1 Sar1 subfamily. 96.8 0.0011 2.3E-08 68.1 3.7 33 688-721 9-41 (190)
484 PRK00098 GTPase RsgA; Reviewed 96.8 0.0012 2.5E-08 73.0 4.3 35 698-732 163-197 (298)
485 TIGR02322 phosphon_PhnN phosph 96.7 0.0011 2.5E-08 67.3 3.6 31 699-730 1-31 (179)
486 PRK11174 cysteine/glutathione 96.7 0.015 3.2E-07 70.9 13.8 78 866-943 66-143 (588)
487 PRK05922 type III secretion sy 96.7 0.002 4.3E-08 73.7 5.2 45 687-732 146-190 (434)
488 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0025 5.4E-08 66.7 5.6 118 686-814 16-139 (213)
489 cd00071 GMPK Guanosine monopho 96.7 0.0011 2.5E-08 64.1 2.8 25 701-725 1-25 (137)
490 PRK06793 fliI flagellum-specif 96.7 0.0018 3.9E-08 74.1 4.8 101 686-818 144-246 (432)
491 TIGR02204 MsbA_rel ABC transpo 96.6 0.018 3.8E-07 70.1 13.3 79 866-944 61-139 (576)
492 PRK13657 cyclic beta-1,2-gluca 96.6 0.019 4.2E-07 69.9 13.6 45 897-941 90-134 (588)
493 PRK08972 fliI flagellum-specif 96.6 0.0021 4.5E-08 73.3 4.4 38 687-725 151-188 (444)
494 TIGR01192 chvA glucan exporter 96.6 0.022 4.8E-07 69.2 13.6 49 893-941 86-134 (585)
495 PRK14723 flhF flagellar biosyn 96.5 0.001 2.2E-08 80.7 1.9 53 688-744 174-226 (767)
496 TIGR03496 FliI_clade1 flagella 96.5 0.0024 5.3E-08 73.0 4.8 43 686-729 125-167 (411)
497 smart00382 AAA ATPases associa 96.5 0.003 6.4E-08 60.3 4.7 36 698-733 1-37 (148)
498 PRK10751 molybdopterin-guanine 96.5 0.0017 3.7E-08 65.1 2.7 33 700-732 7-42 (173)
499 PF13476 AAA_23: AAA domain; P 96.5 0.0021 4.6E-08 66.2 3.5 31 689-720 10-40 (202)
500 cd04155 Arl3 Arl3 subfamily. 96.4 0.0033 7.1E-08 63.2 4.6 29 700-728 15-47 (173)
No 1
>KOG0054|consensus
Probab=100.00 E-value=5e-143 Score=1312.37 Aligned_cols=754 Identities=49% Similarity=0.819 Sum_probs=652.8
Q ss_pred HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHhhHHHHHHHHhhhccCcccc-eehhhhHHHHHHHHHHHHHhhccCCC
Q psy16196 37 TFLLLGALILLNRTRGLRTSGCIFLFVSLLALCGAPQYRTELTASLTRGFTID-YSFVSYMVYYPCVISLLILNFFADAA 115 (950)
Q Consensus 37 ~~~~~~~l~~~e~~~~~~~s~~l~~y~~~~~l~~~~~~rt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~ 115 (950)
.......+.+.+..+++.++.. .||+..+++... .+..+........... .....+.....+........+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1381)
T KOG0054|consen 37 TMLLALLLIQYERLSGVQSSGV--IFWLLCVLCAIV-FRSLILLAKAEGLISDLFRFLLFYSFFALTLSYLILLCTREPF 113 (1381)
T ss_pred HHHHHHhhhheeeecccccchh--hhhhHHhhhhhh-hHHHHHHhhccccccchhhHHHHHHHHHHhhhhhhHHHhcccc
Confidence 3333444444444455555544 889888888777 5555554332211010 11111111111111111111111100
Q ss_pred CCCcCCCCCCCCCCCCCCCh--hhHHHHHhHHHHHHhhccCCCCCCCCCCCCccCchhhhhhHHHHHHHHHHHHHhhccc
Q psy16196 116 PTFSEYPVTENPSPEYRASF--PSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSKEIVPLFDKHWNESLRKAARSQQ 193 (950)
Q Consensus 116 ~~~~~~~~~~~~~pe~~a~~--~s~~~F~Wl~pll~~G~~~~L~~~DL~~l~~~~~s~~l~~~~~~~W~~~~~~~~~~~~ 193 (950)
+ .. +.+..++|.+.++. +|+++|||++|++++|||++|+++|+|+++++|+++.+.++|++.|+++.+|
T Consensus 114 ~-~~--~~~~~~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~------ 184 (1381)
T KOG0054|consen 114 P-FF--SRDVDPNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGR------ 184 (1381)
T ss_pred c-ch--hcccCCCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcc------
Confidence 1 01 11134566666666 9999999999999999999999999999999999999999999999987532
Q ss_pred CCCCchhhhhccCCccccccCCCCCCCCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16196 194 TTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFV 273 (950)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~ 273 (950)
+ +++|+++++++++|++.++..+++.++.....+++|.+++.+|+++
T Consensus 185 --------------------------------~-~~~psl~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~ 231 (1381)
T KOG0054|consen 185 --------------------------------S-GKKPSLLRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFF 231 (1381)
T ss_pred --------------------------------c-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 1 2357999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc
Q psy16196 274 NEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR 353 (950)
Q Consensus 274 ~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r 353 (950)
++++.+.+.||+|+++++++.++++++.++|++..+++|+|+|++|.++||+|+|+++...+++.++|+|+|+|++|++|
T Consensus 232 ~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~r 311 (1381)
T KOG0054|consen 232 SEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQR 311 (1381)
T ss_pred cCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHH
Confidence 98766788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhh
Q psy16196 354 -MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIK 432 (950)
Q Consensus 354 -~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk 432 (950)
.++..++|.+|.+|+|+++++++||.++|+++++|++++++++|+|.+++++++++|++.|+.+|+|++.|+|+|+|||
T Consensus 312 i~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~Ik 391 (1381)
T KOG0054|consen 312 LSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIK 391 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHH
Q psy16196 433 VLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILR 512 (950)
Q Consensus 433 ~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~ 512 (950)
+|||||||+.|.++|++.|++|++.+++..++.++..+++.++|+++++++|++|++. .++.+++.+||+++++||+|+
T Consensus 392 viK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~-~~~~lt~~~aF~slalfniLr 470 (1381)
T KOG0054|consen 392 VIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLL-LGNLLTASTAFTSLALFNILR 470 (1381)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCccccHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999952 247899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchh
Q psy16196 513 FPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVI 592 (950)
Q Consensus 513 ~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (950)
.|+.++|..+..+.++.+|++||++||..+|.++...
T Consensus 471 ~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~------------------------------------------- 507 (1381)
T KOG0054|consen 471 FPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSV------------------------------------------- 507 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccc-------------------------------------------
Confidence 9999999999999999999999999999988755400
Q ss_pred hhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEE
Q psy16196 593 ENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTF 672 (950)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf 672 (950)
..... ...+..|+++|++|
T Consensus 508 ------------------------~~~~~-------------------------------------~~~~~~i~i~~~sf 526 (1381)
T KOG0054|consen 508 ------------------------ERSPD-------------------------------------EAGENAIEIKNGSF 526 (1381)
T ss_pred ------------------------ccCCC-------------------------------------CCCCceEEEeeeeE
Confidence 00000 12235799999999
Q ss_pred EecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHH
Q psy16196 673 TWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRD 752 (950)
Q Consensus 673 ~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIre 752 (950)
+|++. +.+++|+||||+||+|+++||||||||||||||++||||+++.+|++.++|++|||||+||||||||||
T Consensus 527 sW~~~------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 527 SWDSE------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred ecCCC------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHH
Confidence 99862 345699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc----------------------------
Q psy16196 753 NIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV---------------------------- 804 (950)
Q Consensus 753 NIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI---------------------------- 804 (950)
||+||+|||++||++|++||+|++|++.||+||+|+|||||+||||||||||
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 805 -------------------------------------------------------------------------------- 804 (950)
Q Consensus 805 -------------------------------------------------------------------------------- 804 (950)
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 760 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGE 760 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccccccccc
Confidence
Q ss_pred -----------------------------------------cHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHhHHHHH
Q psy16196 805 -----------------------------------------KWQVYLHYLKSIG-LPLSMAAILLNIAFQGFAIGSNIWL 842 (950)
Q Consensus 805 -----------------------------------------~~~vy~~Y~~~~G-~~~~~~~~~~~~~~~~~~~~~~~WL 842 (950)
+|++|+.|++++| +..++++++++++.+++.++.||||
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WL 840 (1381)
T KOG0054|consen 761 SSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWL 840 (1381)
T ss_pred cccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999954 4445556788999999999999999
Q ss_pred HHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccc
Q psy16196 843 SVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRI 922 (950)
Q Consensus 843 ~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrI 922 (950)
++|++++.. +.. ...+..+|+++|++++++++++.+++++.++.++++||++||++|+++|+||||+|||+||+|||
T Consensus 841 s~W~~~~~~--~~~-~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRI 917 (1381)
T KOG0054|consen 841 SYWTDDGED--NGT-TTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRI 917 (1381)
T ss_pred HHhcCCccc--ccc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccch
Confidence 999988642 100 01457899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchHHhhhhhHHHHHHHHHHHh
Q psy16196 923 ISRFSKDVDILDNAIPFCIKSWLLCLF 949 (950)
Q Consensus 923 lNRFS~D~~~iD~~Lp~~~~~~~~~~~ 949 (950)
|||||+||+.||+.||..+..++++++
T Consensus 918 LNRFSkD~~~vD~~Lp~~~~~~~~~~~ 944 (1381)
T KOG0054|consen 918 LNRFSKDIDTVDVLLPFTLEFFLQSLL 944 (1381)
T ss_pred hhhcccchHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 2
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-114 Score=1123.30 Aligned_cols=828 Identities=48% Similarity=0.820 Sum_probs=691.2
Q ss_pred HHHHHHHHHHHHhhcCC---Cc-cEEEhhhHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHhhHHHHHHHHhh
Q psy16196 6 LLIISLSDTIYGLFIGE---GY-AVTYTSPAIKFVTFLLLGALILLNRTRGLRTSGCIFLFVSLLALCGAPQYRTELTAS 81 (950)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~y~~~~~l~~~~~~rt~~~~~ 81 (950)
|+++.++.....++..+ .+ +.+++++++.+++++.++++++.||.|++|||.++.+||+++.+||++++||+|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (1522)
T TIGR00957 75 LWIVCWADLFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLA 154 (1522)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444434444455431 22 567899999999999999999999999999999999999999999999999999863
Q ss_pred hccCc-ccceehhhhHHHHHHHHHHHHHhhccCCCCCCcCCCCCCCCCCCCCCChhhHHHHHhHHHHHHhhccCCCCCCC
Q psy16196 82 LTRGF-TIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKD 160 (950)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~Wl~pll~~G~~~~L~~~D 160 (950)
..... ...+....+.+.++++.+.+++|+..+++|...+...+++++||+++|++||++|||+||++++|||++|+.+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~d 234 (1522)
T TIGR00957 155 LKEDAIVDPFRDTTFYIYFALVLSQLVLSCFSDKSPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESD 234 (1522)
T ss_pred hcccccccceehhhHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhh
Confidence 21110 00122244566677788888888744434432211233457899999999999999999999999999999999
Q ss_pred CCCCCccCchhhhhhHHHHHHHHHHHHHhhcccCCCC--chhhhhccCCccccccCCCCCCCCCCCCCCCCCchHHHHHH
Q psy16196 161 LWNLNHEDTSKEIVPLFDKHWNESLRKAARSQQTTPG--TQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGALC 238 (950)
Q Consensus 161 L~~l~~~~~s~~l~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~l~ 238 (950)
||+++++++++.+.++|++.|+++.++..++....+. +..++.++....+.. ..........++..++++|+++++
T Consensus 235 l~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sl~~~l~ 312 (1522)
T TIGR00957 235 LWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDAN--EEVEALIVKSPHKPRKPSLFKVLY 312 (1522)
T ss_pred ccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccc--ccccccccccccccCCccHHHHHH
Confidence 9999999999999999999999875432110000000 000000000000000 000000000011134578999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 239 KTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSA 318 (950)
Q Consensus 239 ~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 318 (950)
++|++.++.+++++++..++.+++|++++.+++++.+++.+.+.||++++++++++++.+++.++|.+...+++.++|++
T Consensus 313 ~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 392 (1522)
T TIGR00957 313 KTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTA 392 (1522)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999765445566888888999999899999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16196 319 LISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIP 397 (950)
Q Consensus 319 L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p 397 (950)
|+..||+|+++++...+++.++|+++|+|++|+++ .++..++|.+|..|++++++++++|.++|+++++|++++++++|
T Consensus 393 L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~ 472 (1522)
T TIGR00957 393 VMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVP 472 (1522)
T ss_pred HHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 77888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy16196 398 VNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPF 477 (950)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~ 477 (950)
++.++++++++.++++++.+|+|++.++|+++|||+||+||||+.+.+++++.|++|++..++..++..+..+.+...|+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 552 (1522)
T TIGR00957 473 LNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPF 552 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888887777788888
Q ss_pred HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccc
Q psy16196 478 LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSY 557 (950)
Q Consensus 478 l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~ 557 (950)
++.+++|++|.+..+++.+++..+|++++++++++.|+..+|..++.+.++.+|++||++||+.+|.++...
T Consensus 553 ~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-------- 624 (1522)
T TIGR00957 553 LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI-------- 624 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--------
Confidence 888888988887754567999999999999999999999999999999999999999999998664322100
Q ss_pred cccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccc
Q psy16196 558 MVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSR 637 (950)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (950)
+ .....
T Consensus 625 -----------------------------~-----------------------------~~~~~---------------- 630 (1522)
T TIGR00957 625 -----------------------------E-----------------------------RRTIK---------------- 630 (1522)
T ss_pred -----------------------------c-----------------------------ccccC----------------
Confidence 0 00000
Q ss_pred cCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHH
Q psy16196 638 CGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS 717 (950)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~ 717 (950)
+.....|+++|++|+|++ +++++|+|+||+|++|++++|+||+|||||||++
T Consensus 631 ---------------------~~~~~~i~~~~~~~~~~~-------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~ 682 (1522)
T TIGR00957 631 ---------------------PGEGNSITVHNATFTWAR-------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLS 682 (1522)
T ss_pred ---------------------CCCCCcEEEEEeEEEcCC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 111136999999999975 3467999999999999999999999999999999
Q ss_pred HHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 718 ALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 718 aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
+|+|+++|++|+|.++|+||||+|+||+|++||||||+||.++|+++|++++++|+|.+|++.+|+||+|+|||+|.+||
T Consensus 683 ~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS 762 (1522)
T TIGR00957 683 ALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762 (1522)
T ss_pred HHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc-------------------------------------------------------------------------
Q psy16196 798 GGQKQRV------------------------------------------------------------------------- 804 (950)
Q Consensus 798 GGQKQRI------------------------------------------------------------------------- 804 (950)
|||||||
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 9999999
Q ss_pred -----------------c--------------------------------------------------------------
Q psy16196 805 -----------------K-------------------------------------------------------------- 805 (950)
Q Consensus 805 -----------------~-------------------------------------------------------------- 805 (950)
.
T Consensus 843 g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1522)
T TIGR00957 843 GSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHG 922 (1522)
T ss_pred CCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 0
Q ss_pred -----------------------------HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCc
Q psy16196 806 -----------------------------WQVYLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGT 856 (950)
Q Consensus 806 -----------------------------~~vy~~Y~~~~G~~~~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~ 856 (950)
|++|++|++++|++.++++++++++.+++..++++||++|+++... .
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~----~ 998 (1522)
T TIGR00957 923 SSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMV----N 998 (1522)
T ss_pred ccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----c
Confidence 1358999999998777777777888899999999999999975421 0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhh
Q psy16196 857 QDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNA 936 (950)
Q Consensus 857 ~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~ 936 (950)
++..+..+|+++|++++++..++.+++.+++...+.+++++||++|+++++++||+|||++|+|||+||||+|++.||+.
T Consensus 999 ~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~ 1078 (1522)
T TIGR00957 999 GTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSM 1078 (1522)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHH
Confidence 11233568899999999999998888888888889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q psy16196 937 IPFCIKSWLLCLF 949 (950)
Q Consensus 937 Lp~~~~~~~~~~~ 949 (950)
+|..+..++..++
T Consensus 1079 l~~~~~~~~~~~~ 1091 (1522)
T TIGR00957 1079 IPPVIKMFMGSLF 1091 (1522)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776643
No 3
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-112 Score=1101.54 Aligned_cols=755 Identities=36% Similarity=0.610 Sum_probs=653.3
Q ss_pred EhhhHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH---HHHhhHHHHHHHHhhhccCcccceehhhhHHHHHHHHH
Q psy16196 28 YTSPAIKFVTFLLLGALILLNRTRGLRTSGCIFLFVSLL---ALCGAPQYRTELTASLTRGFTIDYSFVSYMVYYPCVIS 104 (950)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~y~~~~---~l~~~~~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (950)
+...++..++++++..+.+.||.|+.++++.+.+||++. +++..+. .......+......+..+.+.+++.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1622)
T PLN03130 115 LIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVL----SVKEYYSSFVLYLYISEVAAQVLFGIL 190 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHH----HHHHHHhccccceehhHHHHHHHHHHH
Confidence 566778888888888899999999999999999999999 7777762 122111110011233445555555555
Q ss_pred H-HHHhhccCCCCCCc---CC---------CCCCCCCCCCCCChhhHHHHHhHHHHHHhhccCCCCCCCCCCCCccCchh
Q psy16196 105 L-LILNFFADAAPTFS---EY---------PVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSK 171 (950)
Q Consensus 105 ~-l~l~~~~~~~~~~~---~~---------~~~~~~~pe~~a~~~s~~~F~Wl~pll~~G~~~~L~~~DL~~l~~~~~s~ 171 (950)
. ++++++++.++... +. +..++++||+++|++||++|||++|++++|||++|+.+|||+++++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~ 270 (1622)
T PLN03130 191 LLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTE 270 (1622)
T ss_pred HHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHH
Confidence 5 67887776532210 11 33467899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCchhhhhccCCccccccCCCCCCCCCCCCCCCCCchHHHHHHHHHhHHHHHHHHH
Q psy16196 172 EIVPLFDKHWNESLRKAARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGALCKTFGPTFLFGSSL 251 (950)
Q Consensus 172 ~l~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~l~~~~~~~~~~~~l~ 251 (950)
.+.++|++.|+++.+ +++|+|+++++++|++.++.++++
T Consensus 271 ~~~~~~~~~w~~~~~-----------------------------------------~~~~~l~~~l~~~~~~~~~~~~~~ 309 (1622)
T PLN03130 271 TLYRSFQKCWDEELK-----------------------------------------KPKPWLLRALNNSLGGRFWLGGFF 309 (1622)
T ss_pred HHHHHHHHHHHHHhc-----------------------------------------cCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999987531 224689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16196 252 KLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTIS 331 (950)
Q Consensus 252 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~ 331 (950)
+++..++.+++|++++.+++++.+++ ..+.+++++++++++.++.+++.++|++...+++.++|..++..+|+|+++++
T Consensus 310 ~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~ 388 (1622)
T PLN03130 310 KIGNDLSQFVGPLLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLT 388 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999997543 23557777766666666666777788888889999999999999999999999
Q ss_pred ccccCCCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 332 NNARKETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQ 410 (950)
Q Consensus 332 ~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~~~~~~~~~~~~ 410 (950)
...+++.++|+++|+|++|+++ .+....+|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.+
T Consensus 389 ~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~ 468 (1622)
T PLN03130 389 HEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLT 468 (1622)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 777788999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhc
Q psy16196 411 IKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLS 490 (950)
Q Consensus 411 ~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~ 490 (950)
+++++.+|+|++.++|+++|||+||+||||+.|.+++++.|++|++..++..++..+..+++...|.++.+++|++|.+.
T Consensus 469 ~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~ 548 (1622)
T PLN03130 469 KEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLL 548 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998888888887888878888899999887
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccccccccchhhhhhh
Q psy16196 491 DDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLIL 570 (950)
Q Consensus 491 ~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (950)
+ +.++++.+|+++++++.+..|+..+|..+..+.++.+|++||++||+.+|..+..
T Consensus 549 ~--g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~---------------------- 604 (1622)
T PLN03130 549 G--GDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP---------------------- 604 (1622)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc----------------------
Confidence 4 5799999999999999999999999999999999999999999999765432110
Q ss_pred hcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccc
Q psy16196 571 NFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILP 650 (950)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (950)
.. ..
T Consensus 605 ----------------------------------------------~~-~~----------------------------- 608 (1622)
T PLN03130 605 ----------------------------------------------NP-PL----------------------------- 608 (1622)
T ss_pred ----------------------------------------------CC-cc-----------------------------
Confidence 00 00
Q ss_pred cccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC-Ce
Q psy16196 651 NLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS-GR 729 (950)
Q Consensus 651 ~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~-G~ 729 (950)
......|+++|++|+|++. +++++|+||||+|++|++++||||+|||||||+++|+||++|.+ |+
T Consensus 609 --------~~~~~~I~~~nvsf~y~~~------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~ 674 (1622)
T PLN03130 609 --------EPGLPAISIKNGYFSWDSK------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674 (1622)
T ss_pred --------cCCCCceEEEeeEEEccCC------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCce
Confidence 0011369999999999751 24689999999999999999999999999999999999999999 99
Q ss_pred eEeCCeEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc-----
Q psy16196 730 VNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV----- 804 (950)
Q Consensus 730 I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI----- 804 (950)
|.++|+||||+|+||||||||||||+||+|+|+++|++|+++|+|++|++.||+||+|+|||+|.||||||||||
T Consensus 675 I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 675 VVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred EEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 805 -------------------------------------------------------------------------------- 804 (950)
Q Consensus 805 -------------------------------------------------------------------------------- 804 (950)
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~ 834 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQ 834 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHH
Confidence
Q ss_pred -----------------------------------------------------------------cHHHHHHHHHhcChh
Q psy16196 805 -----------------------------------------------------------------KWQVYLHYLKSIGLP 819 (950)
Q Consensus 805 -----------------------------------------------------------------~~~vy~~Y~~~~G~~ 819 (950)
+|++|++|+++.|++
T Consensus 835 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~ 914 (1622)
T PLN03130 835 KLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGA 914 (1622)
T ss_pred HHHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccH
Confidence 145799999997644
Q ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 820 -LSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVL 898 (950)
Q Consensus 820 -~~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~l 898 (950)
.++++++++++.+++..++++||++|+++... ......+|+++|++++++..++.+++.+.+...+.+++++|
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~------~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L 988 (1622)
T PLN03130 915 WVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTP------KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRL 988 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566778888999999999999986431 11234679999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHHH
Q psy16196 899 HEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLCL 948 (950)
Q Consensus 899 H~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~~ 948 (950)
|++|+++++++||+|||++|+|||+||||+|++.||+.+|..+..++.++
T Consensus 989 ~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~ 1038 (1622)
T PLN03130 989 HDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQI 1038 (1622)
T ss_pred HHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877776554
No 4
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-110 Score=1083.86 Aligned_cols=755 Identities=35% Similarity=0.597 Sum_probs=649.9
Q ss_pred EhhhHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH---HHHhhHHHHHHHHhhhccCcccceehhhhHHHHHHHHH
Q psy16196 28 YTSPAIKFVTFLLLGALILLNRTRGLRTSGCIFLFVSLL---ALCGAPQYRTELTASLTRGFTIDYSFVSYMVYYPCVIS 104 (950)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~y~~~~---~l~~~~~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (950)
++++++..++++++..+.+.||.|+.++++.+.+||++. +++..+. ..+....+......+..+.+.+.+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1495)
T PLN03232 115 LMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVL----PLKNSINRTALYLCISSRCCQALFGIL 190 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHH----HHHHHHhccccceehhHHHHHHHHHHH
Confidence 566788888888888899999999999999999999999 7777772 122111110001233344444444444
Q ss_pred H-HHHhhccCCCCCC---cC---------CCCCCCCCCCCCCChhhHHHHHhHHHHHHhhccCCCCCCCCCCCCccCchh
Q psy16196 105 L-LILNFFADAAPTF---SE---------YPVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSK 171 (950)
Q Consensus 105 ~-l~l~~~~~~~~~~---~~---------~~~~~~~~pe~~a~~~s~~~F~Wl~pll~~G~~~~L~~~DL~~l~~~~~s~ 171 (950)
. +.+++.++.+... .+ .|...+++||+++|+|||++|+|++|++++|||++|+.+|||+|+++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~ 270 (1495)
T PLN03232 191 LLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTE 270 (1495)
T ss_pred HHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHH
Confidence 4 6677666542211 01 122467889999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCchhhhhccCCccccccCCCCCCCCCCCCCCCCCchHHHHHHHHHhHHHHHHHHH
Q psy16196 172 EIVPLFDKHWNESLRKAARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGALCKTFGPTFLFGSSL 251 (950)
Q Consensus 172 ~l~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~l~~~~~~~~~~~~l~ 251 (950)
.+.++|++.|+++.. +++|+|+++++++|++.++.++++
T Consensus 271 ~~~~~~~~~w~~~~~-----------------------------------------~~~~~l~~~l~~~~~~~~~~~~~~ 309 (1495)
T PLN03232 271 TLIKRFQRCWTEESR-----------------------------------------RPKPWLLRALNNSLGGRFWLGGIF 309 (1495)
T ss_pred HHHHHHHHHHHHhhc-----------------------------------------cCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999986521 124689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16196 252 KLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTIS 331 (950)
Q Consensus 252 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~ 331 (950)
+++..++.+++|++++++++++++++ +.+.++.++++++++.++.+++.++|++...+++.++|..++..+|+|+++++
T Consensus 310 ~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~ 388 (1495)
T PLN03232 310 KIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLT 388 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999997543 23557777777877788888888888888899999999999999999999999
Q ss_pred ccccCCCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 332 NNARKETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQ 410 (950)
Q Consensus 332 ~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~~~~~~~~~~~~ 410 (950)
...+++.++|+++|+|++|+++ .+....+|.+|..|++++++++++|..+|++++++++++++++|++.++++++++.+
T Consensus 389 ~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~ 468 (1495)
T PLN03232 389 HEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLT 468 (1495)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 777788999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhc
Q psy16196 411 IKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLS 490 (950)
Q Consensus 411 ~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~ 490 (950)
+++++.+|+|.+.++|+++|||+||+||||+.+.+++++.|++|++..++......+..+++...|.++.+++|++|.+.
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~ 548 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLL 548 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988888777777777877778899999887
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccccccccchhhhhhh
Q psy16196 491 DDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLIL 570 (950)
Q Consensus 491 ~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (950)
+ +.++++.+|+++++++.+..|+..+|..+..+.++.+|++||++||+.+|..+..
T Consensus 549 ~--~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~---------------------- 604 (1495)
T PLN03232 549 G--GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ---------------------- 604 (1495)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc----------------------
Confidence 4 5799999999999999999999999999999999999999999999765421110
Q ss_pred hcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccc
Q psy16196 571 NFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILP 650 (950)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (950)
.. ..
T Consensus 605 ----------------------------------------------~~-~~----------------------------- 608 (1495)
T PLN03232 605 ----------------------------------------------NP-PL----------------------------- 608 (1495)
T ss_pred ----------------------------------------------cC-Cc-----------------------------
Confidence 00 00
Q ss_pred cccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCe-
Q psy16196 651 NLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR- 729 (950)
Q Consensus 651 ~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~- 729 (950)
......|+++|++|+|++. +++++|+|+||+|++|++++||||+|||||||+++|+||++|.+|.
T Consensus 609 --------~~~~~~I~~~~vsF~y~~~------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 609 --------QPGAPAISIKNGYFSWDSK------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred --------CCCCCcEEEEeeEEEcCCC------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 0011369999999999751 2468999999999999999999999999999999999999999975
Q ss_pred eEeCCeEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc-----
Q psy16196 730 VNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV----- 804 (950)
Q Consensus 730 I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI----- 804 (950)
+.++++||||+|+||||||||||||+||+++|+++|++|+++|+|++|++.||+||+|+|||+|.+|||||||||
T Consensus 675 ~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 675 VVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754 (1495)
T ss_pred EEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 805 -------------------------------------------------------------------------------- 804 (950)
Q Consensus 805 -------------------------------------------------------------------------------- 804 (950)
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~ 834 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFK 834 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHH
Confidence
Q ss_pred --------------------------------------------------------------cHHHHHHHHHhcCh-hHH
Q psy16196 805 --------------------------------------------------------------KWQVYLHYLKSIGL-PLS 821 (950)
Q Consensus 805 --------------------------------------------------------------~~~vy~~Y~~~~G~-~~~ 821 (950)
+|++|++|++++|+ +.+
T Consensus 835 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~ 914 (1495)
T PLN03232 835 KLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVV 914 (1495)
T ss_pred HHHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHH
Confidence 14579999999874 444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 822 MAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEF 901 (950)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ 901 (950)
.++++++++.+++..++++||++|+++... ......+|+++|++++++..++.+++.+.+...+.+++++||++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~------~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 988 (1495)
T PLN03232 915 MILLVCYLTTEVLRVSSSTWLSIWTDQSTP------KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDA 988 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888899999999999976431 12234789999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHHH
Q psy16196 902 LLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLCL 948 (950)
Q Consensus 902 ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~~ 948 (950)
|+++++++||+|||++|+|||+||||+|++.||+.+|..+..++.++
T Consensus 989 l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 989 MLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999777766543
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.3e-103 Score=1013.05 Aligned_cols=697 Identities=27% Similarity=0.451 Sum_probs=581.9
Q ss_pred CCCCCCCCChhhHHHHHhHHHHHHhhccCCCCCCCCCCCCccCchhhhhhHHHHHHHHHHHHHhhcccCCCCchhhhhcc
Q psy16196 126 NPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSKEIVPLFDKHWNESLRKAARSQQTTPGTQAAYLKN 205 (950)
Q Consensus 126 ~~~pe~~a~~~s~~~F~Wl~pll~~G~~~~L~~~DL~~l~~~~~s~~l~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 205 (950)
+++||+++|++||++|||++|++++|||++|+.+|||+|+++++++.+.++|++.|+++..+
T Consensus 2 ~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~------------------ 63 (1490)
T TIGR01271 2 QRSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS------------------ 63 (1490)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc------------------
Confidence 35799999999999999999999999999999999999999999999999999999875321
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHH
Q psy16196 206 SSNIDIAANGSTRPPQDTSKKPPAQASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNA-PLWKGY 284 (950)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~ 284 (950)
+ +++++|+++++++|++.++..++++++..++.+++|++++++|+|++.++. ..+.++
T Consensus 64 --------------------~-~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~ 122 (1490)
T TIGR01271 64 --------------------A-KKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAY 122 (1490)
T ss_pred --------------------c-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHH
Confidence 1 234689999999999999999999999999999999999999999854322 234688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHhHhHHH
Q psy16196 285 FYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITPYLNML 363 (950)
Q Consensus 285 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l 363 (950)
++++++++++++.+++.+++.|...++++++|++|+..||+|+++++...+++.++|+++|+|++|+++ .++..++|.+
T Consensus 123 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~ 202 (1490)
T TIGR01271 123 YLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFV 202 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888899999999999988899988999999999999999999999999999999999999999999999 8888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHH
Q psy16196 364 WSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSF 443 (950)
Q Consensus 364 ~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f 443 (950)
|..|+++++++++||.++|+++++|++++++++|++.++++++.++++++++.+|+|++.++|+|+|||+||+||||+.|
T Consensus 203 ~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~ 282 (1490)
T TIGR01271 203 WIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAM 282 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHH-HHHHHH
Q psy16196 444 QEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLS-MLPMLI 522 (950)
Q Consensus 444 ~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~-~l~~~i 522 (950)
.+++++.|++|++..++..++..+...++...|.++++++|++|.+.. .+++..+|++++++++++.|+. .+|..+
T Consensus 283 ~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~---~~~~~~~ft~lal~~lL~~~l~~~lp~~~ 359 (1490)
T TIGR01271 283 EKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIK---GIILRRIFTTISYCIVLRMTVTRQFPGAI 359 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888888888999999998863 2678999999999999999985 799999
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhch
Q psy16196 523 SQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKG 602 (950)
Q Consensus 523 ~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (950)
..+.++.+|++||++||..+|.++..... + ......++.++.+...
T Consensus 360 ~~~~~a~~s~~RI~~fL~~~e~~~~~~~~--------------------------------~--~~~i~~~~~~f~~~~~ 405 (1490)
T TIGR01271 360 QTWYDSLGAITKIQDFLCKEEYKTLEYNL--------------------------------T--TTEVEMVNVTASWDEG 405 (1490)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccC--------------------------------C--CCceEEecceEecCCc
Confidence 99999999999999999876543210000 0 0000000000000000
Q ss_pred hhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCC
Q psy16196 603 TIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEG 682 (950)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~ 682 (950)
.. . ..+.. .... ... ........++++|++|.+
T Consensus 406 ---------------~~-~------------~~~~~-~~~~-~~~---------~~~~~~~~~~~~~~s~~~-------- 438 (1490)
T TIGR01271 406 ---------------IG-E------------LFEKI-KQNN-KAR---------KQPNGDDGLFFSNFSLYV-------- 438 (1490)
T ss_pred ---------------cc-c------------ccccc-cccc-ccc---------cccccccccccccccccc--------
Confidence 00 0 00000 0000 000 000011234444544432
Q ss_pred CCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCCCCCh
Q psy16196 683 AESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVP 762 (950)
Q Consensus 683 ~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~ 762 (950)
+++|+|+||+|++|++++|+||+||||||||++|+|+++|++|+|.++|+||||+|+||+|++||||||+||.++++
T Consensus 439 ---~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~ 515 (1490)
T TIGR01271 439 ---TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDE 515 (1490)
T ss_pred ---CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc--------------------------------------
Q psy16196 763 RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV-------------------------------------- 804 (950)
Q Consensus 763 ~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI-------------------------------------- 804 (950)
++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------c--------------------------------------
Q psy16196 805 -----------------------------------------K-------------------------------------- 805 (950)
Q Consensus 805 -----------------------------------------~-------------------------------------- 805 (950)
+
T Consensus 596 ~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1490)
T TIGR01271 596 MSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGD 675 (1490)
T ss_pred hcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 806 -------------------------------------------------------------------------------- 805 (950)
Q Consensus 806 -------------------------------------------------------------------------------- 805 (950)
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1490)
T TIGR01271 676 STVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESL 755 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 806 -------------------------------------------------------------------------------- 805 (950)
Q Consensus 806 -------------------------------------------------------------------------------- 805 (950)
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1490)
T TIGR01271 756 PRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEED 835 (1490)
T ss_pred ccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence
Q ss_pred -----------------HHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHhHHHHHHHhhcCCC-----CcccCcc--c--
Q psy16196 806 -----------------WQVYLHYLKSIGLPL-SMAAILLNIAFQGFAIGSNIWLSVWSEDKS-----TIVNGTQ--D-- 858 (950)
Q Consensus 806 -----------------~~vy~~Y~~~~G~~~-~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~-----~~~~~~~--~-- 858 (950)
|++|++|++++|++. ++++++++++.+++..+++|||++|+++.. ...+... .
T Consensus 836 ~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1490)
T TIGR01271 836 LKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQK 915 (1490)
T ss_pred hhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccc
Confidence 024788999987644 344566677889999999999999975321 0000000 0
Q ss_pred ----CCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHh
Q psy16196 859 ----VGKRDLY-LGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDIL 933 (950)
Q Consensus 859 ----~~~~~~y-l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~i 933 (950)
.....+| +++|.+++++.+++.+++.+++...+.+++++||++|+++++++|++|||++|+|||+|||++|++.|
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~i 995 (1490)
T TIGR01271 916 PVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAII 995 (1490)
T ss_pred cccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHH
Confidence 0112344 56666666666777788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHH
Q psy16196 934 DNAIPFCIKSWLLCL 948 (950)
Q Consensus 934 D~~Lp~~~~~~~~~~ 948 (950)
|+.+|..+..++.++
T Consensus 996 d~~l~~~~~~~~~~~ 1010 (1490)
T TIGR01271 996 DDMLPLTLFDFIQLT 1010 (1490)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887654
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-91 Score=907.56 Aligned_cols=760 Identities=29% Similarity=0.467 Sum_probs=591.3
Q ss_pred CCCCCCCCChhhHHHHHhHHHHHHhhccCCCCCCCCCCCCccCchhhhhhHHHHHHHHHHHHHhh-------c-------
Q psy16196 126 NPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSKEIVPLFDKHWNESLRKAAR-------S------- 191 (950)
Q Consensus 126 ~~~pe~~a~~~s~~~F~Wl~pll~~G~~~~L~~~DL~~l~~~~~s~~l~~~~~~~W~~~~~~~~~-------~------- 191 (950)
.+.||+++||+.++++.|++|.+.+..|..|+++|||+...+.++-+...++.+.-++...+..+ +
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 45799999999999999999999999999999999999999988877777777665543321100 0
Q ss_pred ------------cc-CCCCc----------h---hhh--hccCCcc-----------ccccCCC--CCCCC---------
Q psy16196 192 ------------QQ-TTPGT----------Q---AAY--LKNSSNI-----------DIAANGS--TRPPQ--------- 221 (950)
Q Consensus 192 ------------~~-~~~~~----------~---~~~--~~~~~~~-----------~~~~~~~--~~~~~--------- 221 (950)
++ ..|.. . ++. ..+.... +-.+.+. ...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 00 00000 0 000 0000000 0000000 00000
Q ss_pred -----CCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q psy16196 222 -----DTSKKPPAQASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVV 296 (950)
Q Consensus 222 -----~~~~~~~~~~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~ 296 (950)
....++++..+|++++++++++.++..++++++.+++.+++|++++.+++++++++.....++++++++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 011122445789999999999999999999999999999999999999999976544444577788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHH
Q psy16196 297 QTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARK--ETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLA 373 (950)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~--~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~ 373 (950)
.+++.++|.+...+.+.++|++|...+|+|+++++..... +.++|+++|+|++|+++ .++..++|.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765 56889999999999999 88889999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHH
Q psy16196 374 LYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSK 453 (950)
Q Consensus 374 ~~lL~~~lg~~~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~ 453 (950)
+++||+++||++++|++++++++|++.++++++.+.++++++.+|+|++.++|+++|||+||+||||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 454 EIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVK 533 (950)
Q Consensus 454 El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~ 533 (950)
|++.+++...+..+..+++..+|.++.+++|++|.+.+ +.|+++.+|+++++|++++.|+..+|..++.+.++.+|++
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g--~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~ 535 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG--HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIK 535 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999998888999998874 6799999999999999999999999999999999999999
Q ss_pred HHHHhcCcccCCCCccccc-cc-cccccccc-chhhhhhhh-cccCCCCCCCCCCCC---CCcchhhhhhhhhhchhhHH
Q psy16196 534 RINSFMNQEDLDRGFTIDY-SF-VSYMVYYP-CVISLLILN-FFADAAPTFSEYPVT---EDPLVIENVCVVVAKGTIRA 606 (950)
Q Consensus 534 RI~~fL~~~e~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 606 (950)
||++||+.+|.+.....+. .. .......+ +.......+ ......| .+.|.. .... ..+.....+.
T Consensus 536 RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~----- 607 (1560)
T PTZ00243 536 RISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVP--VKLPRAPKVKTSL-LSRALRMLCC----- 607 (1560)
T ss_pred HHHHHHcCccccccccccchhhccccccccccccccccccccccccccc--ccccccccccccc-cccchhhccc-----
Confidence 9999998876321100000 00 00000000 000000000 0000000 000000 0000 0000000000
Q ss_pred HHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCC-------
Q psy16196 607 ARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTE------- 679 (950)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~------- 679 (950)
....+ . .....+.+.++|++|+|+....
T Consensus 608 ----------~~~~~-----------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1560)
T PTZ00243 608 ----------EQCRP-----------------------T------------KRHPSPSVVVEDTDYGSPSSASRHIVEGG 642 (1560)
T ss_pred ----------ccccc-----------------------c------------ccccccccccccccccccccccccccccc
Confidence 00000 0 0000112334444443321000
Q ss_pred ------------------------CCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe
Q psy16196 680 ------------------------GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735 (950)
Q Consensus 680 ------------------------~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~ 735 (950)
....+++++|+||||+|++|++++|+||+||||||||++|+|+++|++|+|.++++
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~ 722 (1560)
T PTZ00243 643 TGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS 722 (1560)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCe
Confidence 00002357999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc-----------
Q psy16196 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV----------- 804 (950)
Q Consensus 736 Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI----------- 804 (950)
||||+|+||+|++||||||+|+.++|+++|++++++|+|++|++.+|+||+|++||+|.+|||||||||
T Consensus 723 i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ 802 (1560)
T PTZ00243 723 IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRD 802 (1560)
T ss_pred EEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 805 -------------------------------------------------------------------------------- 804 (950)
Q Consensus 805 -------------------------------------------------------------------------------- 804 (950)
T Consensus 803 illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 882 (1560)
T PTZ00243 803 VYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSLYATLAAELK 882 (1560)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhChHHHHHHHhhc
Confidence
Q ss_pred ----------------------------------------------------------------cHHHHHHHHHhcChhH
Q psy16196 805 ----------------------------------------------------------------KWQVYLHYLKSIGLPL 820 (950)
Q Consensus 805 ----------------------------------------------------------------~~~vy~~Y~~~~G~~~ 820 (950)
+|++|+.|++++|...
T Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~ 962 (1560)
T PTZ00243 883 ENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLH 962 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHH
Confidence 2568999999988554
Q ss_pred H-HHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 821 S-MAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLH 899 (950)
Q Consensus 821 ~-~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH 899 (950)
+ +++++++++.+++..++++||++|+++... .+...|+++|++++++.+++.+++.+..+..+.++++++|
T Consensus 963 ~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--------~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 1034 (1560)
T PTZ00243 963 AAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--------LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMH 1034 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444555677888899999999999975431 2235799999999988888888887777777889999999
Q ss_pred HHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHHH
Q psy16196 900 EFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLCL 948 (950)
Q Consensus 900 ~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~~ 948 (950)
++|+++++++|++|||++|+|+|+|||++|++.+|+.+|..+..++.++
T Consensus 1035 ~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~ 1083 (1560)
T PTZ00243 1035 RDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCL 1083 (1560)
T ss_pred HHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888876654
No 7
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-57 Score=548.31 Aligned_cols=459 Identities=20% Similarity=0.212 Sum_probs=344.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 231 ASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFR 310 (950)
Q Consensus 231 ~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~ 310 (950)
...++.+.+.+++.++.++++.++..++..++|++++.++|.+..++......+.++++++++.++..++.....+...+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788899999999999999999999999999999999764211111112223334444444555554444455568
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16196 311 VGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAG 388 (950)
Q Consensus 311 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~g 388 (950)
.+.++...++..+|+|+++++...+++.++|++++++++|+++ .+. ...+..++...+.+++++++++..-++.+++.
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 169 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999 554 34566666666666665555554433334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy16196 389 LAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQI----LKIRSKEIKVLKEAAYL 464 (950)
Q Consensus 389 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i----~~~R~~El~~~~~~~~l 464 (950)
++++++...+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++ ++.++.+++..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445567778888888888899999999999999999999999999877766 45566666555544444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHhhcCC---C---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16196 465 NAATSFIWSCAPFLVSLVSFAVYLLSDD---S---HVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSF 538 (950)
Q Consensus 465 ~~~~~~~~~~~p~l~~~~~f~~y~~~~~---~---~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~f 538 (950)
..+..++..+.. + .++.++++.+.+. + ..+++..+|..+.+...+..|+..++..+..+.++.++.+||.++
T Consensus 250 ~~~~~~~~~~~~-~-~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 250 SAVLEFFASISI-A-LVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHH-H-HHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332221 1 1222333333321 0 112333445555566778899999999999999999999999999
Q ss_pred cCcccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhh
Q psy16196 539 MNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNI 618 (950)
Q Consensus 539 L~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (950)
++.++.++.. . ..
T Consensus 328 l~~~~~~~~~--------------------------------------~-----------------------------~~ 340 (588)
T PRK11174 328 LETPLAHPQQ--------------------------------------G-----------------------------EK 340 (588)
T ss_pred HcCCCcccCC--------------------------------------C-----------------------------cc
Confidence 9765421110 0 00
Q ss_pred cccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeC
Q psy16196 619 LHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVRE 698 (950)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~ 698 (950)
..+ ......|+++|++|.|.+ ++++|+|+||+|+|
T Consensus 341 ~~~-------------------------------------~~~~~~i~~~~vsf~~~~--------~~~vL~~i~l~i~~ 375 (588)
T PRK11174 341 ELA-------------------------------------SNDPVTIEAEDLEILSPD--------GKTLAGPLNFTLPA 375 (588)
T ss_pred ccC-------------------------------------CCCCceEEEEeeEEeccC--------CCeeeeeeEEEEcC
Confidence 000 011235999999988764 46799999999999
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhH
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRR 764 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~ 764 (950)
|+++|||||+|||||||+++|+|++ |++|+|.++| +|+||||+||||+|||||||++|+| .++++
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~ee 454 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQ 454 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHH
Confidence 9999999999999999999999999 8999999998 6999999999999999999999976 78899
Q ss_pred HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 765 YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 765 y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++++++.|++++|++.||+|++|.|||+|.+|||||||||
T Consensus 455 i~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRi 494 (588)
T PRK11174 455 LQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494 (588)
T ss_pred HHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999
No 8
>KOG0058|consensus
Probab=100.00 E-value=9.4e-58 Score=519.97 Aligned_cols=457 Identities=22% Similarity=0.249 Sum_probs=353.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
-++.+.+..|+.+..+.++.++.....+..|.++++++|.+...+.....-.-.+.++.++.++.+++...+.+.....+
T Consensus 137 rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~ 216 (716)
T KOG0058|consen 137 RLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAG 216 (716)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999987652111111111233444445555666555555556778
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-c-chHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-M-DITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~-~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++-..++..+|+++++....++++..+||++++++.|++. . .+...+....-+.++..+++.+|.......+++.++
T Consensus 217 ~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i 296 (716)
T KOG0058|consen 217 ERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 88888899999999999999999999999999999999998 4 466778888778888888887776665555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQE----QILKIRSKEIKVLKEAAYLNA 466 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~----~i~~~R~~El~~~~~~~~l~~ 466 (950)
.+.+++.+..+++++.++..++.+++..+-.+...|.+++||+||+|+-|+.-.+ ++++.++--.+......++..
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~ 376 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHh
Confidence 6666666677778888888888888888888999999999999999999986444 444444333333333333332
Q ss_pred HHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy16196 467 ATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDR 546 (950)
Q Consensus 467 ~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 546 (950)
...+.+++ ..++++..|.+.+..+ .++++..-+.+.+-..+..++..+...++.++++.++-+|+.++++.++.-+
T Consensus 377 ~~~~~~~~--~~~siL~~Gg~Lv~~g--~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 377 STNLLGNL--AVLSILFYGGHLVLTG--SLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HHHHHHhH--HHHHHHHhccchhhcC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 33333332 2445667788877753 5776655554545556788999999999999999999999999997643211
Q ss_pred CcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccc
Q psy16196 547 GFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFF 626 (950)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (950)
. . ....+
T Consensus 453 ~--------------------------------------~------------------------------G~~~p----- 459 (716)
T KOG0058|consen 453 L--------------------------------------T------------------------------GTLAP----- 459 (716)
T ss_pred C--------------------------------------C------------------------------Ccccc-----
Confidence 1 0 00000
Q ss_pred cCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEc
Q psy16196 627 DTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVG 706 (950)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG 706 (950)
....+.|+|+||+|+|+.. ++.++|+|+||+|+|||.||+||
T Consensus 460 --------------------------------~~~~G~IeF~~VsFaYP~R------p~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 460 --------------------------------DHLQGVIEFEDVSFAYPTR------PDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred --------------------------------ccccceEEEEEeeeecCCC------CCchhhcCceeeeCCCCEEEEEC
Confidence 0123679999999999863 46789999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHHHHHHh
Q psy16196 707 SVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNKVIDAC 772 (950)
Q Consensus 707 ~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~Vi~ac 772 (950)
|+||||||+.++|+++|+|++|+|.+|| +||+|.|||-||++||+|||.||.+. ++|+.+++.+.|
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~A 581 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999998 69999999999999999999999873 445556666667
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
..+++|..||+||+|+|||||..|||||||||
T Consensus 582 Nah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred ChHHHHHhCccccccccCCccccccchHHHHH
Confidence 77899999999999999999999999999999
No 9
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.8e-56 Score=531.54 Aligned_cols=458 Identities=19% Similarity=0.197 Sum_probs=334.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGM 313 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 313 (950)
+..+++.+++.++..+++.++..++..+.|+++++++|.+...+. ....+.++++++++.++..++.....+...+.+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888889999999999999999999997643221 1111111111112223333332222233456788
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 314 RMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 314 ~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
++...++..+|+|.++++...+++.++|++++++++|+++ .+. ...+..+....+.+++++++++...+..+++.++.
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 162 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAG 162 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 553 33444455555555555555555444444444333
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATR-IRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSF 470 (950)
Q Consensus 392 ~~~~~p~~~~~~~~-~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~ 470 (950)
++++..+...+.++ .++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02868 163 LLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAA 242 (529)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 34455666777888999999999999999999999998888887766555554444443333322
Q ss_pred HHHhhhH--HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy16196 471 IWSCAPF--LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGF 548 (950)
Q Consensus 471 ~~~~~p~--l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 548 (950)
+..+... .+.++.++.|.+.. +.++.+...+.+.+...+..|+..++..+..+.++.++.+||.++++.++..+..
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~--g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 243 AQLLAAGLAVLGALWAGGPAVAD--GTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 2222211 12233455565554 3577766666666667788999999999999999999999999999765321110
Q ss_pred ccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccC
Q psy16196 549 TIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDT 628 (950)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (950)
. .+ .....
T Consensus 321 ~---------------------------------~~--------------------------------~~~~~------- 328 (529)
T TIGR02868 321 V---------------------------------VP--------------------------------AAGAL------- 328 (529)
T ss_pred C---------------------------------CC--------------------------------CCccc-------
Confidence 0 00 00000
Q ss_pred CcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCC
Q psy16196 629 TPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSV 708 (950)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~v 708 (950)
....+.|+++|++|+|++ ++++|+|+||+|+|||+++||||+
T Consensus 329 ------------------------------~~~~~~I~~~~vsf~Y~~--------~~~vL~~isl~i~~G~~vaIvG~S 370 (529)
T TIGR02868 329 ------------------------------GLGKPTLELRDLSFGYPG--------SPPVLDGVSLDLPPGERVAILGPS 370 (529)
T ss_pred ------------------------------CCCCceEEEEEEEEecCC--------CCceeecceEEEcCCCEEEEECCC
Confidence 111246999999999975 346999999999999999999999
Q ss_pred CCChhHHHHHHcCCCcccCCeeEeCC------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCC
Q psy16196 709 GAGKSSLVSALCGEMDKISGRVNTKG------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALT 775 (950)
Q Consensus 709 GSGKSTLL~aLLGe~~~~~G~I~i~g------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~ 775 (950)
|||||||+++|+|+++|++|+|.++| +||||||+|+||+|||||||++|+| .+++++++++++|+++
T Consensus 371 GsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~ 450 (529)
T TIGR02868 371 GSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLA 450 (529)
T ss_pred CCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCH
Confidence 99999999999999999999999998 7999999999999999999999976 5788999999999999
Q ss_pred chhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 776 PDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 776 ~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++++.||+|++|+|||+|.+|||||||||
T Consensus 451 ~~i~~lp~GldT~ige~G~~LSGGQrQRi 479 (529)
T TIGR02868 451 DWLRSLPDGLDTVLGEGGARLSGGERQRL 479 (529)
T ss_pred HHHHhCcccccchhccccCcCCHHHHHHH
Confidence 99999999999999999999999999999
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.3e-54 Score=529.52 Aligned_cols=453 Identities=19% Similarity=0.208 Sum_probs=352.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 232 sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
.+++..++.+++.++..+++.++..++.++.|++++.++|.+.... .....+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667888999999999999999999999999999999775321 111222333344444444444444444455678
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhH-hHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPY-LNMLWSAPLQIGLALYFLWGILGPSVLAG 388 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~-~~~l~~~pl~i~i~~~lL~~~lg~~~l~g 388 (950)
+.++...++..+|+|+++++...+++.++|+++++++ |++. .+. ... +..+...++ +++++++++...++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999997 7777 443 222 233334333 3455555666556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16196 389 LAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNA-- 466 (950)
Q Consensus 389 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~-- 466 (950)
++++++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+......
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777788888888888889999999999999999999999999998888777765555544444333333
Q ss_pred --HHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Q psy16196 467 --ATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDL 544 (950)
Q Consensus 467 --~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~ 544 (950)
+..++..+.+ +.++.+++|.+.. +.++.+..+....++..+..|+..++..+..+.++.++++||.++++.++.
T Consensus 362 ~~~~~~i~~~~~--~~il~~g~~lv~~--g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 437 (686)
T TIGR03797 362 TVFNAVLPVLTS--AALFAAAISLLGG--AGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE 437 (686)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3222222222 2234556666654 457777777777788889999999999999999999999999999875432
Q ss_pred CCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccc
Q psy16196 545 DRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMS 624 (950)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (950)
.+. .....
T Consensus 438 ~~~---------------------------------------------------------------------~~~~~--- 445 (686)
T TIGR03797 438 VDE---------------------------------------------------------------------AKTDP--- 445 (686)
T ss_pred ccc---------------------------------------------------------------------CcCCC---
Confidence 111 00000
Q ss_pred cccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEE
Q psy16196 625 FFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAI 704 (950)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaI 704 (950)
....+.|+++|++|+|++ +++++|+|+||+|+|||.+||
T Consensus 446 ----------------------------------~~~~~~I~~~nvsf~Y~~-------~~~~vL~~isl~i~~Ge~vaI 484 (686)
T TIGR03797 446 ----------------------------------GKLSGAIEVDRVTFRYRP-------DGPLILDDVSLQIEPGEFVAI 484 (686)
T ss_pred ----------------------------------CCCCceEEEEEEEEEcCC-------CCccceeeeEEEECCCCEEEE
Confidence 111246999999999975 356899999999999999999
Q ss_pred EcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHH
Q psy16196 705 VGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771 (950)
Q Consensus 705 VG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~a 771 (950)
||++|||||||+++|+|+++|++|+|.++| +|+||+|+|++|+|||||||.+|+|.++++.+++++.
T Consensus 485 vG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~ 564 (686)
T TIGR03797 485 VGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARM 564 (686)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999998 6999999999999999999999999888999999999
Q ss_pred hcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 772 c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|+++++++.+|+|++|.|||+|.+|||||||||
T Consensus 565 a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred cCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.8e-54 Score=512.02 Aligned_cols=456 Identities=22% Similarity=0.305 Sum_probs=366.6
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 230 QASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMF 309 (950)
Q Consensus 230 ~~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~ 309 (950)
..+.++..++.+++.+.-.++..++..++.++.|++.+.++|.+-... ....-..+++++.+..+...++...-.+...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~-~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA-SRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888889999999999999999999999999999999875432 2223334555666666666666555555667
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16196 310 RVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLA 387 (950)
Q Consensus 310 ~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~ 387 (950)
+++.|+...+...+|+|++++|..++++.++|++++++. |.++ .++ ...+..+..-.+..++.+.+|+.+-++.+++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999986 5665 443 2223333333334445556666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 388 GLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAA 467 (950)
Q Consensus 388 gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~ 467 (950)
+++.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+..+...+...+...
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999999888888877666655444
Q ss_pred HHH----HHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy16196 468 TSF----IWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQED 543 (950)
Q Consensus 468 ~~~----~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e 543 (950)
... +..+.+ +.++.||++.++.++ +|.+..+...++.+.+..|+..+.+.+..++++.++.+|+.+.++.|.
T Consensus 379 ~~~~~~~l~~l~~--v~iL~~G~~lVl~~~--lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~ 454 (709)
T COG2274 379 LNTIKSLLQQLSS--VLILWFGAILVLEGE--LTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454 (709)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 433 333333 345678899888754 555544444456677889999999999999999999999999998764
Q ss_pred CCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccc
Q psy16196 544 LDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCM 623 (950)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (950)
.++... .....
T Consensus 455 E~~~~~-------------------------------------------------------------------~~~~~-- 465 (709)
T COG2274 455 EQEGDK-------------------------------------------------------------------TLIHL-- 465 (709)
T ss_pred cccccc-------------------------------------------------------------------ccccc--
Confidence 322200 00000
Q ss_pred ccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEE
Q psy16196 624 SFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVA 703 (950)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lva 703 (950)
+...+.|+++|++|.|.+ +++++|+|+||+|++||.+|
T Consensus 466 -----------------------------------~~~~g~I~~~nvsf~y~~-------~~~~vL~~isL~I~~Ge~va 503 (709)
T COG2274 466 -----------------------------------PKLQGEIEFENVSFRYGP-------DDPPVLEDLSLEIPPGEKVA 503 (709)
T ss_pred -----------------------------------cccCceEEEEEEEEEeCC-------CCcchhhceeEEeCCCCEEE
Confidence 223468999999999987 45689999999999999999
Q ss_pred EEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHH
Q psy16196 704 IVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVID 770 (950)
Q Consensus 704 IVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ 770 (950)
|||++|||||||+|+|+|.|+|++|+|.+|| +|+||+||+.+|+|||||||.+|+|..+ .+++++
T Consensus 504 IvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~--~e~i~~ 581 (709)
T COG2274 504 IVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT--DEEIIE 581 (709)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC--HHHHHH
Confidence 9999999999999999999999999999998 6999999999999999999999999755 456666
Q ss_pred Hh---cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 771 AC---ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 771 ac---~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|| +.++||..+|.|++|+|||+|.||||||||||
T Consensus 582 A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 582 AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 66 56899999999999999999999999999999
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.1e-53 Score=525.98 Aligned_cols=462 Identities=17% Similarity=0.175 Sum_probs=358.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 232 sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
..++..++.+++.++..++..++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888888999999999999999999999997653322 11222333344444444555444444556678
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGL 389 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl 389 (950)
+.++...++..+|+|+++++...+++.++|+++++++.| +. .+ +...+..+....+.+++.+++++..-++.+++.+
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 300 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988 45 44 3334444555555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 390 AVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATS 469 (950)
Q Consensus 390 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~ 469 (950)
+.+++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++.+.++.+...+.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778888888888888899999999999999999999999999999999888877776655544433322
Q ss_pred ----HHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 470 ----FIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 470 ----~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
++..+.+ +.++.+++|.+.. +.++.+..+..+.++..+..|+..++..+..+.++.++++||.++++.++..
T Consensus 381 ~~~~~i~~~~~--~~il~~g~~~v~~--g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 381 VLPTLLTSLNS--ALILVVGGLRVME--GQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 2222222 2344567776664 4588887777777888899999999999999999999999999999765322
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
+... .+.. .....
T Consensus 457 ~~~~---------------------------------~~~~------------------------------~~~~~---- 469 (710)
T TIGR03796 457 LLEE---------------------------------EEAP------------------------------AAGSE---- 469 (710)
T ss_pred cccc---------------------------------cccc------------------------------ccccc----
Confidence 1100 0000 00000
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIV 705 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIV 705 (950)
. .+...+.|+++|++|+|++ +++++|+|+||+|++||.++||
T Consensus 470 ---------------------~----------~~~~~~~I~~~~vsf~y~~-------~~~~vL~~isl~i~~Ge~vaIv 511 (710)
T TIGR03796 470 ---------------------P----------SPRLSGYVELRNITFGYSP-------LEPPLIENFSLTLQPGQRVALV 511 (710)
T ss_pred ---------------------c----------CCCCCCeEEEEEEEEecCC-------CCCCcccceeEEEcCCCEEEEE
Confidence 0 0111246999999999986 3568999999999999999999
Q ss_pred cCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHH
Q psy16196 706 GSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDA 771 (950)
Q Consensus 706 G~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~a 771 (950)
||+|||||||+++|+|+++|++|+|.++| +|+||||+|++|+|||||||.++++ .++++.+++++.
T Consensus 512 G~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~ 591 (710)
T TIGR03796 512 GGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKD 591 (710)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999987 6999999999999999999998865 778899999999
Q ss_pred hcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 772 c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|+++++++.+|+|++|.|||+|.||||||||||
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999
No 13
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-53 Score=522.94 Aligned_cols=457 Identities=24% Similarity=0.304 Sum_probs=356.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 231 ASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFR 310 (950)
Q Consensus 231 ~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~ 310 (950)
.+.++..++.+++.+...+++.++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778889999999999999999999999999999997643221 1122223333333444444444334445567
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhH-hHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16196 311 VGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPY-LNMLWSAPLQIGLALYFLWGILGPSVLA 387 (950)
Q Consensus 311 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~-~~~l~~~pl~i~i~~~lL~~~lg~~~l~ 387 (950)
.+.++...++..+|+|++++|... .+.++|++++++ +|++. .+. ... +..+...++ +++.+.+++...++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHH
Confidence 889999999999999999999987 677899999999 79988 553 222 233333333 334444555555666676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 388 GLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAA 467 (950)
Q Consensus 388 gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~ 467 (950)
.++++++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777778888899999999999999999999999999999999999999999888877776666555544443
Q ss_pred HHHHHHhhhH--HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 468 TSFIWSCAPF--LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 468 ~~~~~~~~p~--l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
...+...... .+.++.+++|.+.. +.++.+..+..+.++..+..|+..++..+..+.++.++++|+.++++.++..
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~--g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISD--GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3322222211 12344567777664 4688887777778888899999999999999999999999999999765421
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
+... .....
T Consensus 449 ~~~~-------------------------------------------------------------------~~~~~---- 457 (694)
T TIGR03375 449 PEGT-------------------------------------------------------------------RFLHR---- 457 (694)
T ss_pred CCCC-------------------------------------------------------------------CCCCC----
Confidence 1100 00000
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIV 705 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIV 705 (950)
+...+.|+++|++|+|++ +++++|+|+||+|+|||.++||
T Consensus 458 ---------------------------------~~~~~~I~~~~vsf~Y~~-------~~~~vL~~i~l~i~~G~~iaIv 497 (694)
T TIGR03375 458 ---------------------------------PRLQGEIEFRNVSFAYPG-------QETPALDNVSLTIRPGEKVAII 497 (694)
T ss_pred ---------------------------------CCccceEEEEEEEEEeCC-------CCccceeeeeEEECCCCEEEEE
Confidence 111246999999999975 3568999999999999999999
Q ss_pred cCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHH
Q psy16196 706 GSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDA 771 (950)
Q Consensus 706 G~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~a 771 (950)
|++|||||||+++|+|+++|++|+|.++| +|+||+|+|++|+|||||||.+|++ .++++.+++++.
T Consensus 498 G~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~ 577 (694)
T TIGR03375 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAEL 577 (694)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999997 6999999999999999999999987 788999999999
Q ss_pred hcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 772 c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|+++++++.||+|++|.|||+|.+|||||||||
T Consensus 578 ~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 578 AGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred cChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.6e-53 Score=517.54 Aligned_cols=454 Identities=18% Similarity=0.202 Sum_probs=340.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 235 GALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMR 314 (950)
Q Consensus 235 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 314 (950)
..+++.+++.+...+++.++..++.++.|++++.++|.+........ -...+..+++..++..++.....+...+.+.+
T Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (711)
T TIGR00958 153 LGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA-LASAIFFMCLLSIASSVSAGLRGGSFNYTMAR 231 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888889999999999999999999998764322111 11111112222222222222222223356667
Q ss_pred HHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16196 315 MRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVM 392 (950)
Q Consensus 315 ~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~ 392 (950)
+...++..+|+|+++.+..++++..+|+++|++++|++. .+ +...+..++...+.+++++++++..-++.+++.++.+
T Consensus 232 ~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 232 INLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 777888899999999999999999999999999999999 54 4455666777777777777766665555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy16196 393 VILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSK----EIKVLKEAAYLNAAT 468 (950)
Q Consensus 393 ~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~----El~~~~~~~~l~~~~ 468 (950)
++...+..++.++.++..++..+..++..+.+.|.++|+++||.|++|+.+.++.++..++ +.+..+.........
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677777788888888888899999999999999999999999866666555444 333332222222222
Q ss_pred HHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy16196 469 SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGF 548 (950)
Q Consensus 469 ~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 548 (950)
..+..+.. +.++.++.|.+.. +.++.+.....+.+...+..|+..++..+..+.++.++.+||.++++.++..+..
T Consensus 392 ~~~~~~~~--~~il~~g~~lv~~--g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 467 (711)
T TIGR00958 392 SVLGMLIQ--VLVLYYGGQLVLT--GKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT 467 (711)
T ss_pred HHHHHHHH--HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 22222222 2334556666654 4588887777777888899999999999999999999999999999764321110
Q ss_pred ccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccC
Q psy16196 549 TIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDT 628 (950)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (950)
....+
T Consensus 468 --------------------------------------------------------------------~~~~~------- 472 (711)
T TIGR00958 468 --------------------------------------------------------------------GTLAP------- 472 (711)
T ss_pred --------------------------------------------------------------------CCCCC-------
Confidence 00000
Q ss_pred CcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCC
Q psy16196 629 TPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSV 708 (950)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~v 708 (950)
....+.|+++|++|+|++. +++++|+|+||+|+|||.++||||+
T Consensus 473 ------------------------------~~~~~~I~~~nVsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~S 516 (711)
T TIGR00958 473 ------------------------------LNLEGLIEFQDVSFSYPNR------PDVPVLKGLTFTLHPGEVVALVGPS 516 (711)
T ss_pred ------------------------------CCCCCeEEEEEEEEECCCC------CCCccccCceEEEcCCCEEEEECCC
Confidence 0112469999999999751 2468999999999999999999999
Q ss_pred CCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcC
Q psy16196 709 GAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACAL 774 (950)
Q Consensus 709 GSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L 774 (950)
|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||||||.+|.+ .++++.+++++.|++
T Consensus 517 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l 596 (711)
T TIGR00958 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596 (711)
T ss_pred CCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999998 6999999999999999999999976 567889999999999
Q ss_pred CchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 775 TPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 775 ~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++.||+|++|.|||+|.+|||||||||
T Consensus 597 ~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 999999999999999999999999999999
No 15
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.3e-52 Score=497.92 Aligned_cols=446 Identities=20% Similarity=0.197 Sum_probs=329.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 242 GPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALIS 321 (950)
Q Consensus 242 ~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 321 (950)
|+.++.++++.++..++..+.|+++++++|.+..+.......+.+++.++++.++..++.....+...+++.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888999999999999999999977311111112222333333444444444333344456788899999999
Q ss_pred HHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16196 322 TIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVN 399 (950)
Q Consensus 322 ~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~ 399 (950)
.+|+|.++++...+++.++|++++++++|+++ .+. ...+..+....+.+++++++++...++.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 553 3445555555555555555444433333333333222222233
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q psy16196 400 GYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKV----LKEAAYLNAATSFIWSCA 475 (950)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~----~~~~~~l~~~~~~~~~~~ 475 (950)
.++.++..+..++.++..+++.+.+.|.++|+++||.|+.|+.+.+++++..++..+. .+..........++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777778888889999999999999999999999998888776554433332 222222222222222222
Q ss_pred hHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccc
Q psy16196 476 PFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFV 555 (950)
Q Consensus 476 p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~ 555 (950)
.+ .++.++++.+.. +.++.+..+..+.+...+..|+..+...+..+.++.++++||.++++.++.+..
T Consensus 242 ~~--~~~~~~~~~~~~--g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-------- 309 (529)
T TIGR02857 242 VA--LVAVYIGFRLLA--GDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-------- 309 (529)
T ss_pred HH--HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--------
Confidence 11 112234444443 357877777777778889999999999999999999999999999974321110
Q ss_pred cccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccc
Q psy16196 556 SYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRIL 635 (950)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (950)
.....
T Consensus 310 -------------------------------------------------------------~~~~~-------------- 314 (529)
T TIGR02857 310 -------------------------------------------------------------KAPVT-------------- 314 (529)
T ss_pred -------------------------------------------------------------CcCCC--------------
Confidence 00000
Q ss_pred cccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHH
Q psy16196 636 SRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSL 715 (950)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTL 715 (950)
....+.|+++|++|+|++ .++++|+|+||+|+||++++||||+|||||||
T Consensus 315 -----------------------~~~~~~i~~~~v~f~y~~-------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL 364 (529)
T TIGR02857 315 -----------------------AAPAPSLEFSGLSVAYPG-------RRAPALRPVSFTVPPGERVALVGPSGAGKSTL 364 (529)
T ss_pred -----------------------CCCCCeEEEEEEEEECCC-------CCcccccceeEEECCCCEEEEECCCCCCHHHH
Confidence 001136999999999975 34589999999999999999999999999999
Q ss_pred HHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhC
Q psy16196 716 VSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEML 781 (950)
Q Consensus 716 L~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~L 781 (950)
+++|+|+++|++|+|.++| +|+||+|+|++|++||||||.+|.+ .++++.+++++.++++++++.+
T Consensus 365 ~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 365 LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 9999999999999999987 4999999999999999999999876 5677889999999999999999
Q ss_pred CCCCcccccCCCCCCCHHHhhcc
Q psy16196 782 PAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 782 p~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|+|+||.+||+|.+|||||||||
T Consensus 445 p~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 445 PQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred cccccchhccccccCCHHHHHHH
Confidence 99999999999999999999999
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.7e-52 Score=512.98 Aligned_cols=454 Identities=19% Similarity=0.206 Sum_probs=344.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
.+...++.+++.++..++..++..++.++.|++++.++|.+.... .....+.++++++++.++..++.....+...+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (708)
T TIGR01193 146 KFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLG 224 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888999999999999999999999764322 1111222333333344444444433344556788
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++...++..+|+|+++++...+++.++|+++++++ |+++ .+. ...+..+....+.+++.+.+++..-++.+++.++
T Consensus 225 ~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 303 (708)
T TIGR01193 225 QRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 899999999999999999999999999999999998 8887 543 2222222333333344444455444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAA----YLNA 466 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~----~l~~ 466 (950)
++++.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+.. ....
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566677888888888889999999999999999999999999999888887766555444433332 2233
Q ss_pred HHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy16196 467 ATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDR 546 (950)
Q Consensus 467 ~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 546 (950)
+..++..+.+ +.++.+++|.+.. +.++.+..+....+...+..|+..+...+..+.++.++++||.++++.++..+
T Consensus 384 ~~~~~~~~~~--i~il~~g~~lv~~--g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 384 IKAVTKLILN--VVILWTGAYLVMR--GKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 3333332322 2345667777764 46777777777777888999999999999999999999999999997653221
Q ss_pred CcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccc
Q psy16196 547 GFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFF 626 (950)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (950)
... .....
T Consensus 460 ~~~-------------------------------------------------------------------~~~~~----- 467 (708)
T TIGR01193 460 NKK-------------------------------------------------------------------KRTEL----- 467 (708)
T ss_pred ccc-------------------------------------------------------------------cccCC-----
Confidence 100 00000
Q ss_pred cCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEc
Q psy16196 627 DTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVG 706 (950)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG 706 (950)
+...+.|+++|++|+|++ ++++|+|+||+|++|+.++|||
T Consensus 468 --------------------------------~~~~~~I~~~~vsf~y~~--------~~~iL~~isl~i~~G~~vaIvG 507 (708)
T TIGR01193 468 --------------------------------NNLNGDIVINDVSYSYGY--------GSNILSDISLTIKMNSKTTIVG 507 (708)
T ss_pred --------------------------------CCCCCcEEEEEEEEEcCC--------CCcceeceeEEECCCCEEEEEC
Confidence 111246999999999964 4689999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCC-C-CChhHHHHHHHH
Q psy16196 707 SVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK-T-HVPRRYNKVIDA 771 (950)
Q Consensus 707 ~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~-~-~d~~~y~~Vi~a 771 (950)
|+|||||||+++|+|+++|++|+|.++| +|+||||+|+||+|||||||.+|. + .++++.+++++.
T Consensus 508 ~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~ 587 (708)
T TIGR01193 508 MSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEI 587 (708)
T ss_pred CCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 699999999999999999999983 3 677888999999
Q ss_pred hcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 772 c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|+++++++.||+|++|.|||+|.+|||||||||
T Consensus 588 a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred hCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999
No 17
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.5e-52 Score=499.34 Aligned_cols=453 Identities=17% Similarity=0.219 Sum_probs=353.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGM 313 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 313 (950)
++.+++.+++.++.++++.++..++....|++++.+++...... .....+.+++++++..++..++.....+...+.+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888899999999999999999999999999998654322 11111222223333333444433333344567788
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 314 RMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 314 ~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
++...++..+|+|.++.+...+++.+.|++++++++|+++ .+ +...+..++...+.+++++.+++..-++.+++.+++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998 54 344555666666677777776766655556655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q psy16196 392 MVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYL----NAA 467 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l----~~~ 467 (950)
+++.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+.... ..+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPI 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677888888888889999999999999999999999999999988777776665555444433333 323
Q ss_pred HHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy16196 468 TSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRG 547 (950)
Q Consensus 468 ~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 547 (950)
...+..+.. +.++.++++.+.. +.++++..+..+.++..+..|+..+...+..+.++.++.+||.++++.++..+.
T Consensus 244 ~~~~~~~~~--~~~~~~g~~~~~~--g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 244 TQLIASLAL--AVVLFIALFQAQA--GSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHc--CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 222222222 2234456665554 468888888888888899999999999999999999999999999975432211
Q ss_pred cccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccccc
Q psy16196 548 FTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFD 627 (950)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (950)
.....
T Consensus 320 ---------------------------------------------------------------------~~~~~------ 324 (571)
T TIGR02203 320 ---------------------------------------------------------------------GTRAI------ 324 (571)
T ss_pred ---------------------------------------------------------------------CCCCC------
Confidence 00000
Q ss_pred CCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcC
Q psy16196 628 TTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGS 707 (950)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~ 707 (950)
....+.++++|++|+|++ .++++|+|+||+|++|++++|+|+
T Consensus 325 -------------------------------~~~~~~i~~~~v~f~y~~-------~~~~il~~inl~i~~G~~v~IvG~ 366 (571)
T TIGR02203 325 -------------------------------ERARGDVEFRNVTFRYPG-------RDRPALDSISLVIEPGETVALVGR 366 (571)
T ss_pred -------------------------------CCCCCeEEEEEEEEEcCC-------CCCccccCeeEEecCCCEEEEECC
Confidence 111236999999999975 356899999999999999999999
Q ss_pred CCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCC--CCChhHHHHHHHHh
Q psy16196 708 VGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK--THVPRRYNKVIDAC 772 (950)
Q Consensus 708 vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~--~~d~~~y~~Vi~ac 772 (950)
+|||||||+++|+|+++|++|+|.++| +|+||||+|++|+|||||||.+++ +.++++.+++++.|
T Consensus 367 sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~ 446 (571)
T TIGR02203 367 SGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAA 446 (571)
T ss_pred CCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 999999999999999999999999997 599999999999999999999996 47889999999999
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.||+|+||.|||+|.+|||||||||
T Consensus 447 ~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 447 YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred ChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-51 Score=497.75 Aligned_cols=455 Identities=17% Similarity=0.178 Sum_probs=342.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 232 sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
..++.+++.+++.++..++..++..++..+.|++++.+++.+..... ......++.+++++.++..++.....+...++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RSVLKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888999999999987653221 11111122222223333333332222344567
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGL 389 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl 389 (950)
+.++...++..+|+|.++++...+.+.+.|++++++++|+++ .+ ....+..++..++.+++.+.+++...++.+++.+
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 172 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999998 54 3445556666667777776666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q psy16196 390 AVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEA----AYLN 465 (950)
Q Consensus 390 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~----~~l~ 465 (950)
+++++.+.+..+..++.++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++-.+...+. ....
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544554555566777778888888888899999999999999999999999987777766544443333333 2333
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 466 AATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 466 ~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
.+..++..+. .+.++.++.+.+.. +.++.+.....++++..+..|+..+...+..+.++..+++||.++++.++.+
T Consensus 253 ~~~~~~~~~~--~~~i~~~g~~~~~~--g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 253 PIIQLIASLA--LAFVLYAASFPSVM--DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 3333322222 22334455565554 3577777666666777788999999999999999999999999998754321
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
+.. ... .
T Consensus 329 ~~~--------------------------------------------------------------------~~~-~---- 335 (582)
T PRK11176 329 DEG--------------------------------------------------------------------KRV-I---- 335 (582)
T ss_pred CCC--------------------------------------------------------------------CcC-C----
Confidence 110 000 0
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIV 705 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIV 705 (950)
+...+.|+++|++|+|++ .++++|+|+||+|++||+++||
T Consensus 336 ---------------------------------~~~~~~i~~~~vsf~y~~-------~~~~il~~i~l~i~~G~~~aIv 375 (582)
T PRK11176 336 ---------------------------------ERAKGDIEFRNVTFTYPG-------KEVPALRNINFKIPAGKTVALV 375 (582)
T ss_pred ---------------------------------CCCCCeEEEEEEEEecCC-------CCCccccCceEEeCCCCEEEEE
Confidence 111235999999999975 3568999999999999999999
Q ss_pred cCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC--CChhHHHHHHH
Q psy16196 706 GSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT--HVPRRYNKVID 770 (950)
Q Consensus 706 G~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~--~d~~~y~~Vi~ 770 (950)
|++|||||||+++|+|+++|++|+|.++| .|+||||+|++|++||||||++|++ +++++.+++++
T Consensus 376 G~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~ 455 (582)
T PRK11176 376 GRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAAR 455 (582)
T ss_pred CCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999987 6899999999999999999999864 68889999999
Q ss_pred HhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 771 ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 771 ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+++++++.||+|++|.+||+|.+|||||||||
T Consensus 456 ~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred HhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 9999999999999999999999999999999999
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-50 Score=488.82 Aligned_cols=451 Identities=19% Similarity=0.219 Sum_probs=330.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKG-YFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
+..+++.+++.++..+++.++..++..+.|+++..++|.+.......... ..+++++++..++..++.....+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888899999999999999999999764321111111 11222233333333333332333445778
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++...++..+|+|.++++...+.+.++|+++|++++|+++ .+. ...+..+....+.+++++.+++...++..++.++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~ 173 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999 543 3334444444444444444444433333444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNA---- 466 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~---- 466 (950)
++++.+.+..+..++.++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+......
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455556666666667777888889999999999999999999888888766554443322222111
Q ss_pred -HHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 467 -ATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 467 -~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
+..++..+ ..++. +.++.+. .. +.++.+..+..+.++..+..|+..+...+..+.++..+.+||.++++.++.+
T Consensus 254 ~~~~~~~~~-~~~~~-~~~~~~~-~~--g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 254 PLLSLFSAL-ILCGL-LMLFGFS-AS--GTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHH-HHHHH-HHHHHHH-HC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 11111111 11111 1122232 22 4578777777777888899999999999999999999999999998754321
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
.. .. ..
T Consensus 329 ~~---------------------------------------------------------------------~~-~~---- 334 (592)
T PRK10790 329 YG---------------------------------------------------------------------ND-DR---- 334 (592)
T ss_pred CC---------------------------------------------------------------------CC-cc----
Confidence 11 00 00
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIV 705 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIV 705 (950)
+...+.|+++|++|+|++ ++++|+|+||+|++||+++||
T Consensus 335 ---------------------------------~~~~~~i~~~~v~f~y~~--------~~~il~~i~l~i~~Ge~iaIv 373 (592)
T PRK10790 335 ---------------------------------PLQSGRIDIDNVSFAYRD--------DNLVLQNINLSVPSRGFVALV 373 (592)
T ss_pred ---------------------------------CCCCCeEEEEEEEEEeCC--------CCceeeceeEEEcCCCEEEEE
Confidence 011246999999999974 457999999999999999999
Q ss_pred cCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHh
Q psy16196 706 GSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC 772 (950)
Q Consensus 706 G~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac 772 (950)
|++|||||||+++|+|+++|++|+|.++| +|+||||+|++|++||||||.+|++.++++.+++++++
T Consensus 374 G~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~ 453 (592)
T PRK10790 374 GHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETV 453 (592)
T ss_pred CCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999987 59999999999999999999999988889999999999
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.||+|++|.|||+|.+|||||||||
T Consensus 454 gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 454 QLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred CcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999
No 20
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-50 Score=485.62 Aligned_cols=451 Identities=19% Similarity=0.181 Sum_probs=325.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 236 ALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVN-EPNA--PLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 236 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
.+++.+++.++.++++.++..++..+.|.+++++++... .+.. ........+++++++.++..++.....+...+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 9 KLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999999999999999642 2211 0011111122233333344444333334455788
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++...++..+|+|+++++...+++..+|++++++++|+++ .++ ...+..+....+.+++++++++..-++.+++.++
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~ 168 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999 554 3445555666666665555555444444443333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy16196 391 VMVILIP-VNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLN---- 465 (950)
Q Consensus 391 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~---- 465 (950)
++++..+ +..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 23445666777778888888888999999999999999999999887777765554444333333322
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Q psy16196 466 AATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFN-ILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDL 544 (950)
Q Consensus 466 ~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~-~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~ 544 (950)
.+..++..+. .+.++.++++.+ .+ .++.+.....+.+.. ....|+..++..+..+.++.++.+||.++++.++.
T Consensus 249 ~~~~~~~~~~--~~~i~~~g~~~~-~g--~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 249 ALMILANGLT--VVLMLWLAAGGV-GG--NAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHh-cc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2222222221 122334455543 32 344443333222222 23458888899999999999999999999975432
Q ss_pred CCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccc
Q psy16196 545 DRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMS 624 (950)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (950)
.+. + .....
T Consensus 324 ~~~------------------------------------~--------------------------------~~~~~--- 332 (574)
T PRK11160 324 VTF------------------------------------P--------------------------------TTSTA--- 332 (574)
T ss_pred CCC------------------------------------C--------------------------------cccCC---
Confidence 111 0 00000
Q ss_pred cccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEE
Q psy16196 625 FFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAI 704 (950)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaI 704 (950)
....+.|+++|++|+|++ +++++|+|+||+|++|+.++|
T Consensus 333 ----------------------------------~~~~~~i~~~~v~f~y~~-------~~~~il~~i~~~i~~G~~~ai 371 (574)
T PRK11160 333 ----------------------------------AADQVSLTLNNVSFTYPD-------QPQPVLKGLSLQIKAGEKVAL 371 (574)
T ss_pred ----------------------------------CCCCCeEEEEEEEEECCC-------CCCcceecceEEECCCCEEEE
Confidence 011246999999999975 245799999999999999999
Q ss_pred EcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHH
Q psy16196 705 VGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVID 770 (950)
Q Consensus 705 VG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ 770 (950)
|||+|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||||||.+|++ .++++.+++++
T Consensus 372 vG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~ 451 (574)
T PRK11160 372 LGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQ 451 (574)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHH
Confidence 999999999999999999999999999987 4999999999999999999999976 57788899999
Q ss_pred HhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 771 ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 771 ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++++++++. |+|+||.|||+|.+|||||||||
T Consensus 452 ~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 452 QVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred HcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHH
Confidence 9999999999 99999999999999999999999
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.3e-50 Score=482.36 Aligned_cols=459 Identities=19% Similarity=0.230 Sum_probs=339.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 232 sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
+.++.+++.+++.+...+++.++..++.++.|++++.++|.+-...... ....++++++++.++..+......+...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888889999999999999999999999743221111 111122222222222233333333445678
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGL 389 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl 389 (950)
+.++...++..+|+|+++++...+.+.+.|++++++++|+++ .+. ...+..++...+.+++++.+++...++.+++.+
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 889999999999999999999988889999999999999999 554 334444444555555554444444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q psy16196 390 AVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYL----N 465 (950)
Q Consensus 390 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l----~ 465 (950)
+.+++.+.+..++.+++++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.... .
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334456777888888888889999999999999999999999999998777777665544443333222 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 466 AATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 466 ~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
.+..++..+ ..+.++.++++.+.. +.++.+..+....+...+..|+..++..+..+.++.++++||.++++.++..
T Consensus 246 ~~~~~~~~~--~~~~~~~~g~~~v~~--g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 246 AIVIVLVFG--AIVGVLWVGAHDVIA--GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 222222111 123334556666654 3577777666667777888999999999999999999999999999754321
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
+... . ....+
T Consensus 322 ~~~~--------------------------------------~----------------------------~~~~~---- 331 (576)
T TIGR02204 322 KAPA--------------------------------------H----------------------------PKTLP---- 331 (576)
T ss_pred CCCC--------------------------------------C----------------------------CccCC----
Confidence 1100 0 00000
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIV 705 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIV 705 (950)
....+.|+++|++|+|+++ +++++|+|+||+++|||+++|+
T Consensus 332 ---------------------------------~~~~~~i~~~~v~f~y~~~------~~~~iL~~inl~i~~Ge~i~Iv 372 (576)
T TIGR02204 332 ---------------------------------VPLRGEIEFEQVNFAYPAR------PDQPALDGLNLTVRPGETVALV 372 (576)
T ss_pred ---------------------------------cCCCceEEEEEEEEECCCC------CCCccccceeEEecCCCEEEEE
Confidence 0112469999999999751 2367999999999999999999
Q ss_pred cCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHH
Q psy16196 706 GSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDA 771 (950)
Q Consensus 706 G~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~a 771 (950)
|++|||||||+++|+|+++|++|+|.++| .|+||||+||+|+|||||||.+|+| .++++.+++++.
T Consensus 373 G~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~ 452 (576)
T TIGR02204 373 GPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARA 452 (576)
T ss_pred CCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999987 6999999999999999999999876 466788899999
Q ss_pred hcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 772 c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++.++++.+|+|++|.|||+|.+|||||||||
T Consensus 453 ~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 453 AHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred cCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 999999999999999999999999999999999
No 22
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-49 Score=478.02 Aligned_cols=449 Identities=22% Similarity=0.302 Sum_probs=328.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
.++.+++ ++ .+..+.++.++..++....|.++..+++.+... ......+...++++.++..++.....+...+.+
T Consensus 6 ~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 6 RLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 77 888888999999999999999999999977611 111111222222222233333322333344556
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHhH-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITPY-LNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~~-~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++...++..+|+|.++++...+++..+|++++++++|++. ...... ...+..+++.++..+++++..-...+++.++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 160 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88999999999999999999999999999999999999998 554333 3333334455555555555443333344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKV----LKEAAYLNA 466 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~----~~~~~~l~~ 466 (950)
..+++..+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++.++..++..+. .+....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566666777888888889999999999999999999999997655555444333333 222223222
Q ss_pred HHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy16196 467 ATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDR 546 (950)
Q Consensus 467 ~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 546 (950)
+...+..+. .+.++.++.+.+.. ..++.+.....+.+...+..|+..+...+..+..+.++.+|+.++++.++...
T Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 316 (567)
T COG1132 241 LMLLLSSLG--TVLVLALGGFLVLS--GSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE 316 (567)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHc--CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 222222221 22233445555443 34777766666777778889999999999999999999999999998743211
Q ss_pred CcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccc
Q psy16196 547 GFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFF 626 (950)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (950)
+. ... .
T Consensus 317 ~~--------------------------------------------------------------------~~~-~----- 322 (567)
T COG1132 317 DP--------------------------------------------------------------------PDP-L----- 322 (567)
T ss_pred CC--------------------------------------------------------------------CCC-C-----
Confidence 10 000 0
Q ss_pred cCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEc
Q psy16196 627 DTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVG 706 (950)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG 706 (950)
....+.|+++|++|+|++ ++++|+|+||+++|||.+||||
T Consensus 323 --------------------------------~~~~~~I~f~~vsf~y~~--------~~~vl~~is~~i~~Ge~vaiVG 362 (567)
T COG1132 323 --------------------------------KDTIGSIEFENVSFSYPG--------KKPVLKDISFSIEPGEKVAIVG 362 (567)
T ss_pred --------------------------------CCCCCeEEEEEEEEEcCC--------CCccccCceEEEcCCCEEEEEC
Confidence 112246999999999985 5689999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHHHHHHh
Q psy16196 707 SVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNKVIDAC 772 (950)
Q Consensus 707 ~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~Vi~ac 772 (950)
|+|||||||+++|+|+++|++|+|.+|| +||||+|+|+||++||||||.+|+|. ++++-+++++.+
T Consensus 363 ~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a 442 (567)
T COG1132 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLA 442 (567)
T ss_pred CCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999987 69999999999999999999999984 666778888888
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.+|+|+||.|||+|.+|||||||||
T Consensus 443 ~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl 474 (567)
T COG1132 443 NAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474 (567)
T ss_pred ChHHHHHhCcccccceecCCCccCCHHHHHHH
Confidence 89999999999999999999999999999999
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.1e-50 Score=478.35 Aligned_cols=436 Identities=18% Similarity=0.264 Sum_probs=320.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16196 252 KLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTIS 331 (950)
Q Consensus 252 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~ 331 (950)
.++..++..+.|++++.++|.+..........+.++++++++.++..++.....+...+.+.++...++..+|+|+++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35556777889999999999765322111122233333433344444433222333456788899999999999999999
Q ss_pred ccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 332 NNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGP-SVLAGLAVMVILIPVNGYVATRIRN 408 (950)
Q Consensus 332 ~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~-~~l~gl~~~~~~~p~~~~~~~~~~~ 408 (950)
...+.+..+|++++++++|++. ... ...+..++..++.+++++++++..++| .+++.++++++...+...+.++..+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 533 334555666555555554444323333 3444444444444445556677777
Q ss_pred HHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16196 409 LQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRS----KEIKVLKEAAYLNAATSFIWSCAPFLVSLVSF 484 (950)
Q Consensus 409 ~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~----~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f 484 (950)
..++..+..++..+.+.|.++|+++||.|++|+.+.++..+..+ .+.+..+..............+. .+.++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 241 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMA--NLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 77777777788889999999999999999999987776665443 33333333332222222221211 1223445
Q ss_pred HhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccccccccch
Q psy16196 485 AVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCV 564 (950)
Q Consensus 485 ~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 564 (950)
+.|.+.. +.++.+..++.+.+...+..|+..++..+..+.++.++.+||.++++.++..+.
T Consensus 242 g~~lv~~--g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~----------------- 302 (569)
T PRK10789 242 GSWMVVN--GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD----------------- 302 (569)
T ss_pred HHHHHHc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC-----------------
Confidence 6666654 457888777777778888999999999999999999999999999975422111
Q ss_pred hhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcc
Q psy16196 565 ISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDT 644 (950)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (950)
.....
T Consensus 303 ----------------------------------------------------~~~~~----------------------- 307 (569)
T PRK10789 303 ----------------------------------------------------GSEPV----------------------- 307 (569)
T ss_pred ----------------------------------------------------CCCCC-----------------------
Confidence 00000
Q ss_pred cccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 645 VDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+...+.|+++|++|+|+. ++.++|+|+||+++||++++||||+|||||||+++|+|+++
T Consensus 308 --------------~~~~~~I~~~~v~~~y~~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 308 --------------PEGRGELDVNIRQFTYPQ-------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred --------------CCCCCcEEEEEEEEECCC-------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 111236999999999975 34679999999999999999999999999999999999999
Q ss_pred ccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCccccc
Q psy16196 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790 (950)
Q Consensus 725 ~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IG 790 (950)
|++|+|.++| +|+||+|+|++|++||||||.+|++ .++++++++++.+++++++..+|+|++|.+|
T Consensus 367 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 446 (569)
T PRK10789 367 VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446 (569)
T ss_pred CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceec
Confidence 9999999987 5999999999999999999999965 6778899999999999999999999999999
Q ss_pred CCCCCCCHHHhhcc
Q psy16196 791 EKGINLSGGQKQRV 804 (950)
Q Consensus 791 e~G~~LSGGQKQRI 804 (950)
|+|.+|||||||||
T Consensus 447 ~~g~~LSgGq~qRi 460 (569)
T PRK10789 447 ERGVMLSGGQKQRI 460 (569)
T ss_pred CCCCcCCHHHHHHH
Confidence 99999999999999
No 24
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-49 Score=487.35 Aligned_cols=456 Identities=20% Similarity=0.240 Sum_probs=346.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 231 ASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFR 310 (950)
Q Consensus 231 ~sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~ 310 (950)
.+.++..++.+++.+...++..++..++.++.|++++.++|.+.... .......++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999999999764321 11122233333444444444444444445567
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16196 311 VGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAG 388 (950)
Q Consensus 311 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~g 388 (950)
++.++...++..+|+|+++++...+++.++|++++++ +|++. .++ ...+..+....+.+++.+.+++..-++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999 69988 553 22333333333334444555555555555655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy16196 389 LAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAA- 467 (950)
Q Consensus 389 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~- 467 (950)
++++++.+.+..++.++.++..++..+..+++.+.+.|.++|+++||.+|.|+.+.++.++..++..+...+.......
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666777778888888888889999999999999999999999988888877666555544444333332
Q ss_pred ---HHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Q psy16196 468 ---TSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDL 544 (950)
Q Consensus 468 ---~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~ 544 (950)
..++..+.+ +.++.+++|.+..+ .++.+.......+...+..|+..+...+..+.++.++++||.++++.++.
T Consensus 365 ~~~~~~i~~~~~--~~il~~g~~lv~~g--~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 365 GQAIELIQKLTF--AILLWFGAHLVIGG--ALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHH--HHhHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 222222222 23345677766653 57776665566677788999999999999999999999999999976432
Q ss_pred CCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccc
Q psy16196 545 DRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMS 624 (950)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (950)
.+.. .....
T Consensus 441 ~~~~--------------------------------------------------------------------~~~~~--- 449 (694)
T TIGR01846 441 PRSA--------------------------------------------------------------------GLAAL--- 449 (694)
T ss_pred ccCC--------------------------------------------------------------------CCCCC---
Confidence 1110 00000
Q ss_pred cccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEE
Q psy16196 625 FFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAI 704 (950)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaI 704 (950)
+...+.|+++|++|+|++ +++++|+|+||+|++|+.++|
T Consensus 450 ----------------------------------~~~~~~i~~~~vsf~y~~-------~~~~il~~i~l~i~~G~~vai 488 (694)
T TIGR01846 450 ----------------------------------PELRGAITFENIRFRYAP-------DSPEVLSNLNLDIKPGEFIGI 488 (694)
T ss_pred ----------------------------------CCCCCeEEEEEEEEEcCC-------CCccccccceEEECCCCEEEE
Confidence 111246999999999975 356799999999999999999
Q ss_pred EcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHH
Q psy16196 705 VGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVID 770 (950)
Q Consensus 705 VG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ 770 (950)
||++|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||||||.++++ .++++..++++
T Consensus 489 vG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~ 568 (694)
T TIGR01846 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAK 568 (694)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999998 5999999999999999999999875 56777888888
Q ss_pred HhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 771 ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 771 ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++++++++.||+|++|.|||+|.+|||||||||
T Consensus 569 ~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 8999999999999999999999999999999999
No 25
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-49 Score=474.39 Aligned_cols=441 Identities=18% Similarity=0.190 Sum_probs=327.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 239 KTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSA 318 (950)
Q Consensus 239 ~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 318 (950)
+.+++.++..+++.++..++..+.|++++.++|.+.... .....+.++++++++.++..++.....+...+.+.++...
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888889999999999999999999654221 1112223333444444445555444445556788999999
Q ss_pred HHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHh--HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16196 319 LISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITP--YLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVIL 395 (950)
Q Consensus 319 L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~--~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~ 395 (950)
++..+|+|+++++.. ..|...+.+++|+++ .+... .+..+...++.++.. .+++...++.+++.++.+++.
T Consensus 81 lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 81 LNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999873 235567888999998 55432 233444444444333 334433343333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q psy16196 396 IPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYL----NAATSFI 471 (950)
Q Consensus 396 ~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l----~~~~~~~ 471 (950)
+.+..+..++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.... ......+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667777788889999999999999999999999999998888877666555444333332 2222222
Q ss_pred HHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccc
Q psy16196 472 WSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTID 551 (950)
Q Consensus 472 ~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 551 (950)
..+. .+.++.+++|.+.. +.++++..++.+.++..+..|+..+...+..+.++.++.+||.++++.++..+.
T Consensus 235 ~~~~--~~~~~~~g~~l~~~--g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---- 306 (544)
T TIGR01842 235 RIVL--QSLVLGLGAYLAID--GEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---- 306 (544)
T ss_pred HHHH--HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC----
Confidence 2221 12334566676654 468888888888888899999999999999999999999999999965432111
Q ss_pred cccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcc
Q psy16196 552 YSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPL 631 (950)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (950)
.. ..
T Consensus 307 -----------------------------------------------------------------~~-~~---------- 310 (544)
T TIGR01842 307 -----------------------------------------------------------------AM-PL---------- 310 (544)
T ss_pred -----------------------------------------------------------------CC-CC----------
Confidence 00 00
Q ss_pred cccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCC
Q psy16196 632 GRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAG 711 (950)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSG 711 (950)
+...+.++++|++|+|++ +++++|+|+||+++||++++||||+|||
T Consensus 311 ---------------------------~~~~~~i~~~~v~~~y~~-------~~~~~l~~~~~~i~~G~~~~ivG~sGsG 356 (544)
T TIGR01842 311 ---------------------------PEPEGHLSVENVTIVPPG-------GKKPTLRGISFRLQAGEALAIIGPSGSG 356 (544)
T ss_pred ---------------------------CCCCCeEEEEEEEEEcCC-------CCccccccceEEEcCCCEEEEECCCCCC
Confidence 111236999999999975 3468999999999999999999999999
Q ss_pred hhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCch
Q psy16196 712 KSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPD 777 (950)
Q Consensus 712 KSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~D 777 (950)
||||+++|+|+++|++|+|.++| .|+||||+|++|++||||||.++.+ .++++.+++++.++++++
T Consensus 357 KSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 436 (544)
T TIGR01842 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436 (544)
T ss_pred HHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHH
Confidence 99999999999999999999987 5999999999999999999997655 677888899999999999
Q ss_pred hhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 778 FEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 778 i~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.||+|++|.+||+|.+|||||||||
T Consensus 437 i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 437 ILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred HHhCccccccccCCCcCCCCHHHHHHH
Confidence 999999999999999999999999999
No 26
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.8e-49 Score=474.61 Aligned_cols=450 Identities=16% Similarity=0.203 Sum_probs=332.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 235 GALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMR 314 (950)
Q Consensus 235 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 314 (950)
..+++.++..++..+++.++..++.++.|++++.++|.+..+ ... . .+++.+++..++..+......+...++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 11 LQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-GDI--F-PLLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888899999999999999999999977543 111 1 111111111122121111122234566778
Q ss_pred HHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16196 315 MRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVM 392 (950)
Q Consensus 315 ~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~ 392 (950)
+|..++..+|+|.++++...+.+.+.|++++++++|++. .+. ...+..+....+..++.+++++..-++.+++.++++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 166 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLG 166 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999998 432 333444444444344444444443333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy16196 393 VILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIR----SKEIKVLKEAAYLNAAT 468 (950)
Q Consensus 393 ~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R----~~El~~~~~~~~l~~~~ 468 (950)
++...+..++.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.- +.+.+..+.......+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777788888888888889999999999999999999999998766665543 44444333333333333
Q ss_pred HHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy16196 469 SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGF 548 (950)
Q Consensus 469 ~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 548 (950)
.++..+. .+.++.+++|.+.. +.++.+..+..+.++..+..|+..+...+..+.++..+++|+.++++.++..+..
T Consensus 247 ~~~~~~~--~~~~~~~g~~~v~~--g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 247 RAASTIT--MLAILVLGAALVQK--GQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHHHHH--HHHHHHHHHHHHHc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 3222222 23344566776664 4688888888888888999999999999999999999999999998653321110
Q ss_pred ccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccC
Q psy16196 549 TIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDT 628 (950)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (950)
+ .....
T Consensus 323 -----------------------------------~--------------------------------~~~~~------- 328 (588)
T PRK13657 323 -----------------------------------P--------------------------------GAIDL------- 328 (588)
T ss_pred -----------------------------------C--------------------------------CCCCc-------
Confidence 0 00000
Q ss_pred CcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCC
Q psy16196 629 TPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSV 708 (950)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~v 708 (950)
+...+.|+++|++|+|++ ++++|+|+||+++||++++|||++
T Consensus 329 ------------------------------~~~~~~I~~~~vsf~y~~--------~~~iL~~inl~i~~G~~v~IvG~s 370 (588)
T PRK13657 329 ------------------------------GRVKGAVEFDDVSFSYDN--------SRQGVEDVSFEAKPGQTVAIVGPT 370 (588)
T ss_pred ------------------------------CCCCCeEEEEEEEEEeCC--------CCceecceeEEECCCCEEEEECCC
Confidence 111236999999999974 357999999999999999999999
Q ss_pred CCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcC
Q psy16196 709 GAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACAL 774 (950)
Q Consensus 709 GSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L 774 (950)
|||||||+++|+|+++|++|+|.++| +|+||||+|++|+|||||||++++| .++++.+++++.|++
T Consensus 371 GsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l 450 (588)
T PRK13657 371 GAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQA 450 (588)
T ss_pred CCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCH
Confidence 99999999999999999999999987 6999999999999999999999975 567778889999999
Q ss_pred CchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 775 TPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 775 ~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++.+|+|++|.+||+|.+|||||||||
T Consensus 451 ~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 451 HDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred HHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999
No 27
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.3e-48 Score=463.28 Aligned_cols=451 Identities=16% Similarity=0.197 Sum_probs=331.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGM 313 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 313 (950)
++.+++.+++.++..+++.++..++..+.|++++.++|.+...+. . ..+++..++..++..+......+...++..
T Consensus 10 l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 10 ALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667888889999999999999999999999999997653221 1 111111111122222221111223456778
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 314 RMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 314 ~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
++|..++..+|+|.++++...+++.++|++++++++|++. .+ ....+..+....+.+++++++++..-+..+++.+++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 165 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999998 44 333444445555555555455544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSK----EIKVLKEAAYLNAA 467 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~----El~~~~~~~~l~~~ 467 (950)
+++...+..++.++.++.+++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++ +.+..+.......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566777777777777888888999999999999999999999877776665443 33333222222232
Q ss_pred HHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy16196 468 TSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRG 547 (950)
Q Consensus 468 ~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 547 (950)
...+..+.. +.++.++.|.+.. +.++.+..+..+.+...+..|+..+...+..+.++.++++|+.++++.++..+.
T Consensus 246 ~~~~~~~~~--~~v~~~g~~~v~~--g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 321 (585)
T TIGR01192 246 NRMASTISM--MCILVIGTVLVIK--GELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321 (585)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 222222222 2334566676654 458887777777778888999999999999999999999999999865421111
Q ss_pred cccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccccc
Q psy16196 548 FTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFD 627 (950)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (950)
. . .....
T Consensus 322 ~--------------------------------------~-----------------------------~~~~~------ 328 (585)
T TIGR01192 322 P--------------------------------------A-----------------------------DAPEL------ 328 (585)
T ss_pred C--------------------------------------c-----------------------------cCCCC------
Confidence 0 0 00000
Q ss_pred CCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcC
Q psy16196 628 TTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGS 707 (950)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~ 707 (950)
+...+.++++|++|+|++ ++++|+|+||+|++|+.++|+||
T Consensus 329 -------------------------------~~~~~~i~~~~v~~~y~~--------~~~~l~~i~~~i~~G~~~~ivG~ 369 (585)
T TIGR01192 329 -------------------------------PNVKGAVEFRHITFEFAN--------SSQGVFDVSFEAKAGQTVAIVGP 369 (585)
T ss_pred -------------------------------CCCCCeEEEEEEEEECCC--------CCccccceeEEEcCCCEEEEECC
Confidence 111236999999999974 34689999999999999999999
Q ss_pred CCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhc
Q psy16196 708 VGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACA 773 (950)
Q Consensus 708 vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~ 773 (950)
+|||||||+++|+|+++|++|+|.++| +++||+|+|++|++||||||.+|.+ .+++..+++++.++
T Consensus 370 sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~ 449 (585)
T TIGR01192 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAA 449 (585)
T ss_pred CCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999987 5999999999999999999999975 45666777888888
Q ss_pred CCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 774 LTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 774 L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++..+|+|++|.+||+|.+|||||||||
T Consensus 450 ~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 450 AHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred cHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999
No 28
>KOG0055|consensus
Probab=100.00 E-value=1.6e-48 Score=468.23 Aligned_cols=448 Identities=21% Similarity=0.288 Sum_probs=318.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--chhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy16196 238 CKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAP--LWKGYFYAILLLVTSVVQTLL--LSTYFDRMFRVGM 313 (950)
Q Consensus 238 ~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~ 313 (950)
.++.|+.++++.+..++..+..-+..+++.+++.-+..++.+ ......+++.+++..+...++ .++|++ ...|.
T Consensus 659 ~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f--~~~ge 736 (1228)
T KOG0055|consen 659 NKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFF--GIAGE 736 (1228)
T ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 345566666677766666665555666788888765533221 111112443333333333322 233433 35677
Q ss_pred HHHHHHHHHHHHHHhcccccccCC--CChhhHHHHHhhcccc-cch-----HhHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16196 314 RMRSALISTIYRKALTISNNARKE--TTVGEIVNLMSVDAQR-MDI-----TPYLNMLWSAPLQIGLALYFLWGILGPSV 385 (950)
Q Consensus 314 ~~r~~L~~~iy~K~L~l~~~~~~~--~~~G~ivnlms~Dv~r-~~~-----~~~~~~l~~~pl~i~i~~~lL~~~lg~~~ 385 (950)
++...++.+.|+|+++.+...+++ ++ |.+.+++++|+.. ... ...+..+-...+-+++++++-|++ +
T Consensus 737 ~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~l----a 811 (1228)
T KOG0055|consen 737 KLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRL----A 811 (1228)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 788888889999999999887764 45 9999999999977 332 223334444444555555555553 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 386 LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLN 465 (950)
Q Consensus 386 l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~ 465 (950)
++++++.+++........+.+....++..+..++--+...|.+++||+||.|+.|+.|.+...+.-++-.+...+..++.
T Consensus 812 lv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~ 891 (1228)
T KOG0055|consen 812 LVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLIS 891 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666667777778888888888999999999999999999999999887777665444444444444444
Q ss_pred HHHHHHHHhhhHHH--HHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy16196 466 AATSFIWSCAPFLV--SLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQED 543 (950)
Q Consensus 466 ~~~~~~~~~~p~l~--~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e 543 (950)
.+...+.+...+++ ..+.+|.+.+.. +..++..+|..+..+.+-..-+.......|.+..|..|..+|.+.++.+.
T Consensus 892 gl~f~~sqs~~~~~~A~~f~~G~~Li~~--g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 892 GLGFGFSQSLLFFVYALSFWYGARLISN--GEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 44433333333322 233456665553 46888888887666655556677778888999999999999999997654
Q ss_pred -CCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccc
Q psy16196 544 -LDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSC 622 (950)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (950)
.+++. ++ ...
T Consensus 970 ~i~~~~--------------------------------------~~----------------------------~~~--- 980 (1228)
T KOG0055|consen 970 TIDPDS--------------------------------------TS----------------------------GGK--- 980 (1228)
T ss_pred CCCCCC--------------------------------------CC----------------------------CCc---
Confidence 22110 00 000
Q ss_pred cccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEE
Q psy16196 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLV 702 (950)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lv 702 (950)
.+...+.|+++||+|+||.. .+.++|+|+||+|++|+.+
T Consensus 981 -----------------------------------~~~~~G~I~~~~V~F~YPsR------P~~~Il~~l~l~i~~GqTv 1019 (1228)
T KOG0055|consen 981 -----------------------------------LPNVKGDIEFRNVSFAYPTR------PDVPVLNNLSLSIRAGQTV 1019 (1228)
T ss_pred -----------------------------------cccceeEEEEeeeEeeCCCC------CCchhhcCCcEEecCCCEE
Confidence 02234679999999999963 4678999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHH
Q psy16196 703 AIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKV 768 (950)
Q Consensus 703 aIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~V 768 (950)
|+|||+||||||.+.+|.|+|+|++|.|.+|| +||.|+|||-|||+||||||+||.+ .++++..++
T Consensus 1020 ALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1020 ALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA 1099 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999998 7999999999999999999999933 344444444
Q ss_pred HHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 769 IDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 769 i~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.+.+..+++|..||+||||.|||||.+|||||||||
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence 444456889999999999999999999999999999
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.2e-48 Score=501.03 Aligned_cols=458 Identities=16% Similarity=0.120 Sum_probs=313.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 236 ALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRM 315 (950)
Q Consensus 236 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (950)
..++.+++.++.++++.++..++..+.|++++.+++.+.........+..+++.++++.++..++.....+...+++.++
T Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~ 897 (1466)
T PTZ00265 818 REIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKV 897 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667788888888888999999999999999854322111111222333333333333333322333455788899
Q ss_pred HHHHHHHHHHHHhcccccccCC--CChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 316 RSALISTIYRKALTISNNARKE--TTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 316 r~~L~~~iy~K~L~l~~~~~~~--~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
...++..+|+|+++++..++++ .++|++++++++|++. .++ ...+..+...++.+++++++++..-+..+++.
T Consensus 898 ~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~--- 974 (1466)
T PTZ00265 898 EKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVL--- 974 (1466)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999998875 7899999999999998 543 33344444555555555444443322222221
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-----------------HhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATRIRNL-QIKQM-----------------KSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSK 453 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~-~~~~~-----------------~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~ 453 (950)
++++..+...+.++.+.. .+++. +..++....++|.++||++||.|+.|+.+.+++++.-+.
T Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~ 1054 (1466)
T PTZ00265 975 TGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDY 1054 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHH
Confidence 112222222233322221 11111 113344678999999999999999999988888776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 454 EIKVLKEAAYLNAATSFIWSCAPF--LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVS 531 (950)
Q Consensus 454 El~~~~~~~~l~~~~~~~~~~~p~--l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s 531 (950)
..+..++.....++...+..+... .+.++.+|++.+.. +.++....+..+..+.....++..+...++.+.++.++
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~--g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a 1132 (1466)
T PTZ00265 1055 SNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR--GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLS 1132 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333222222222211 22344567777664 45777766665544444445788889999999999999
Q ss_pred HHHHHHhcCcccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhh
Q psy16196 532 VKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLH 611 (950)
Q Consensus 532 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (950)
.+||.++++.++..+... .+
T Consensus 1133 ~~ri~~ll~~~~~~~~~~---------------------------------~~--------------------------- 1152 (1466)
T PTZ00265 1133 FEKYYPLIIRKSNIDVRD---------------------------------NG--------------------------- 1152 (1466)
T ss_pred HHHHHHHHCCCCcCCCCC---------------------------------Cc---------------------------
Confidence 999999997542111000 00
Q ss_pred hhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccc
Q psy16196 612 LMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQN 691 (950)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~ 691 (950)
..... . .+...+.|+|+||+|+|++. ++.++|+|
T Consensus 1153 -----~~~~~-------------------------~----------~~~~~g~I~f~nVsF~Y~~~------~~~~vL~~ 1186 (1466)
T PTZ00265 1153 -----GIRIK-------------------------N----------KNDIKGKIEIMDVNFRYISR------PNVPIYKD 1186 (1466)
T ss_pred -----ccccc-------------------------c----------CCCCCceEEEEEEEEECCCC------CCCccccC
Confidence 00000 0 01112469999999999751 24579999
Q ss_pred eeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc----------------------------------------------
Q psy16196 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK---------------------------------------------- 725 (950)
Q Consensus 692 Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~---------------------------------------------- 725 (950)
+||+|++|+.+|||||+|||||||+++|+|+|+|
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999998
Q ss_pred --------cCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCC
Q psy16196 726 --------ISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPA 783 (950)
Q Consensus 726 --------~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~ 783 (950)
++|+|.++| +||||+|+|+||+|||||||.+|+| .+++..+++++.++++++|+.||+
T Consensus 1267 ~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1267 GEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred ccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 699999988 6999999999999999999999976 466677888888899999999999
Q ss_pred CCcccccCCCCCCCHHHhhcc
Q psy16196 784 GDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 784 Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++|.|||+|.+|||||||||
T Consensus 1347 GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1347 KYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred ccCCccCCCCCcCCHHHHHHH
Confidence 999999999999999999999
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-46 Score=485.29 Aligned_cols=457 Identities=13% Similarity=0.111 Sum_probs=323.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
+++...+.+++.++.++++.++..++..+.|++++++++.+..++ ... .+++.++++.++..++...+.+...+++
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 125 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVN---DIIFSLVLIGIFQFILSFISSFCMDVVT 125 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566777888888888888888999999999999764221 111 1222223333333333333334456788
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++...++..+|+|+++++..++++...|++++.++.|++. .+. ...+..+...++.+++++++++..-+..+++.++
T Consensus 126 ~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~ 205 (1466)
T PTZ00265 126 TKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 543 3445555566666666666665554445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSF 470 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~ 470 (950)
++++++.+..++.+++++..++..+..++..+.+.|.++||++||.|+.|+.+.++.++..+...+...+......+...
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667778887777777777888999999999999999999999998888876555444444443333333222
Q ss_pred HHHhhh--HHHHHHHHHhHhhcCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy16196 471 IWSCAP--FLVSLVSFAVYLLSDDS------HVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQE 542 (950)
Q Consensus 471 ~~~~~p--~l~~~~~f~~y~~~~~~------~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 542 (950)
+..... ..+.++.+|.+.+..+. ..++...+++.+....+...++..+...+..+..+.++.+||.+.++.+
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~ 365 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRK 365 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 211111 12233456676665431 2355555444332222222344455556789999999999999998754
Q ss_pred cCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccc
Q psy16196 543 DLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSC 622 (950)
Q Consensus 543 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (950)
+..+.. . .....
T Consensus 366 ~~~~~~--------------------------------------~-----------------------------~~~~~- 377 (1466)
T PTZ00265 366 PLVENN--------------------------------------D-----------------------------DGKKL- 377 (1466)
T ss_pred CCCCCC--------------------------------------C-----------------------------CCccC-
Confidence 321100 0 00000
Q ss_pred cccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEE
Q psy16196 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLV 702 (950)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lv 702 (950)
+. ...|+++|++|+|+.. .+.++|+|+||+|++|+.+
T Consensus 378 ------------------------------------~~-~~~I~~~nVsf~Y~~~------~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 378 ------------------------------------KD-IKKIQFKNVRFHYDTR------KDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred ------------------------------------CC-CCcEEEEEEEEEcCCC------CCCceeccceEEEcCCCEE
Confidence 11 1269999999999751 1347999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcCCCcccCCeeEeC-C-------------eEEEEeccCcCCCccHHHHHhcCCC---------
Q psy16196 703 AIVGSVGAGKSSLVSALCGEMDKISGRVNTK-G-------------SIAFVPQQAWIQNATLRDNIVFGKT--------- 759 (950)
Q Consensus 703 aIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~-g-------------~Iayv~Q~pwL~ngTIreNIlfg~~--------- 759 (950)
|||||+|||||||+++|+|+++|++|+|.++ | +|+||+|+|.||++||+|||.+|..
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 9999999999999999999999999999994 4 4999999999999999999999742
Q ss_pred -------------------------------------------------CChhHHHHHHHHhcCCchhhhCCCCCccccc
Q psy16196 760 -------------------------------------------------HVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790 (950)
Q Consensus 760 -------------------------------------------------~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IG 790 (950)
.+++...++++.++++++++.||+|++|.||
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 1223445555566788999999999999999
Q ss_pred CCCCCCCHHHhhcc
Q psy16196 791 EKGINLSGGQKQRV 804 (950)
Q Consensus 791 e~G~~LSGGQKQRI 804 (950)
++|.+|||||||||
T Consensus 575 ~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 575 SNASKLSGGQKQRI 588 (1466)
T ss_pred CCCCcCCHHHHHHH
Confidence 99999999999999
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-47 Score=427.70 Aligned_cols=439 Identities=21% Similarity=0.290 Sum_probs=330.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 247 FGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRK 326 (950)
Q Consensus 247 ~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K 326 (950)
...++.++..+..+.|-.++..+++.+-.++. ....+.++++++++.++++++.-.-....++.+.++|..|+..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888888877776544322 22233455666677777887766566677899999999999999999
Q ss_pred HhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16196 327 ALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWS---APLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGY 401 (950)
Q Consensus 327 ~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~---~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~~~ 401 (950)
..++++...+..++|++.++++.-+|. .. +..|++.+.. .|+.+.++++.... .++++-++.+.++-..+..
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w---~aalIllit~PlIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNW---AAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 43 4566665543 34444444444333 3444444444443333456
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy16196 402 VATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQI----LKIRSKEIKVLKEAAYLNAATSFIWSCAPF 477 (950)
Q Consensus 402 ~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i----~~~R~~El~~~~~~~~l~~~~~~~~~~~p~ 477 (950)
++++.++..+++++....--...-+.|.|+.++|.|+..+...+++ ++.|+.-|+.++..-.-..+..++....-
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi- 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI- 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6777778888888888888888999999999999999887666655 45788888877654332333333333322
Q ss_pred HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccc
Q psy16196 478 LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSY 557 (950)
Q Consensus 478 l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~ 557 (950)
.+..+ +.++.+.+. +.++-..+|..|.+---+..|++.+...+..-+++.++.+++..|++.|....+..
T Consensus 239 AlvAv-~~g~~ll~~-G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~-------- 308 (559)
T COG4988 239 ALVAV-YIGFRLLGE-GDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG-------- 308 (559)
T ss_pred HHHHH-HHHHHHHcc-CCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--------
Confidence 22222 333344431 25777777887777777888999999999999999999999999998765432200
Q ss_pred cccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccc
Q psy16196 558 MVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSR 637 (950)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (950)
+ ..+..
T Consensus 309 -----------------------------~-----------------------------~~~~~---------------- 314 (559)
T COG4988 309 -----------------------------E-----------------------------KAEVA---------------- 314 (559)
T ss_pred -----------------------------c-----------------------------ccccc----------------
Confidence 0 00000
Q ss_pred cCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHH
Q psy16196 638 CGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS 717 (950)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~ 717 (950)
......+..+|++|.|++ ++++++|+||++++|+++||||++|||||||++
T Consensus 315 ---------------------~~~~~ei~~~~l~~~y~~--------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~ 365 (559)
T COG4988 315 ---------------------NEPPIEISLENLSFRYPD--------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLN 365 (559)
T ss_pred ---------------------cCCCceeeecceEEecCC--------CCcccCCceeEecCCcEEEEECCCCCCHHHHHH
Confidence 111224556699999986 459999999999999999999999999999999
Q ss_pred HHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHHHHHHhcCCchhhhCCC
Q psy16196 718 ALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNKVIDACALTPDFEMLPA 783 (950)
Q Consensus 718 aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~Vi~ac~L~~Di~~Lp~ 783 (950)
+|+|+++|++|+|.++| +|+||+|+|+||+|||||||+++++. +++...++++..+|.+.++. |+
T Consensus 366 lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~ 444 (559)
T COG4988 366 LLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PD 444 (559)
T ss_pred HHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CC
Confidence 99999999999999997 69999999999999999999999984 56788999999999999999 99
Q ss_pred CCcccccCCCCCCCHHHhhcc
Q psy16196 784 GDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 784 Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|.||+|||+|.+|||||+|||
T Consensus 445 GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 445 GLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred cccchhccCCCCCCHHHHHHH
Confidence 999999999999999999999
No 32
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.3e-47 Score=497.32 Aligned_cols=462 Identities=19% Similarity=0.177 Sum_probs=315.8
Q ss_pred hHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTFL-FGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFR 310 (950)
Q Consensus 232 sL~~~l~~~~~~~~~-~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~ 310 (950)
+.++.+++..++... ..+++.++..++....|+.++...+............+ +...+++..++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSL-RLSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655543322 22333444556677788888777653211000110111 1112222222222221111222345
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16196 311 VGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAG 388 (950)
Q Consensus 311 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~g 388 (950)
.+.+.-..++..+|+|+++.+..++++.++|+++|++++|++. .+ +...+..+...++.++.++.+++....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999999999999999 44 344555566666666666555544333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 389 LAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAAT 468 (950)
Q Consensus 389 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~ 468 (950)
+++++++..++.+..+..+..++...+..+...+..+|.++|+++||.|++|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333334444444555555555666777899999999999999999999998888777666555433322222222
Q ss_pred HHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy16196 469 SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGF 548 (950)
Q Consensus 469 ~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 548 (950)
.....+...++ ++..+.+.+.. .+.++++.+..++.+...+..|+..+...+..+..+.+|.+||.+|++.++.++..
T Consensus 1192 ~~~~~~~~~~~-~~~~~~~~v~~-~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1192 AVRLECVGNCI-VLFAALFAVIS-RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 11111111111 11223333332 23578887777777777888999999999999999999999999999654322110
Q ss_pred ccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccC
Q psy16196 549 TIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDT 628 (950)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (950)
. + .....
T Consensus 1270 ~-------------------------------------~-----------------------------~~~~~------- 1276 (1522)
T TIGR00957 1270 I-------------------------------------Q-----------------------------ETAPP------- 1276 (1522)
T ss_pred c-------------------------------------c-----------------------------CCCCC-------
Confidence 0 0 00000
Q ss_pred CcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCC
Q psy16196 629 TPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSV 708 (950)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~v 708 (950)
.. -...+.|+|+|++|+|++ +.+++|+||||+|++||++||||++
T Consensus 1277 -----------------~~-----------wp~~g~I~f~nVsf~Y~~-------~~~~vL~~is~~I~~GekiaIVGrT 1321 (1522)
T TIGR00957 1277 -----------------SG-----------WPPRGRVEFRNYCLRYRE-------DLDLVLRHINVTIHGGEKVGIVGRT 1321 (1522)
T ss_pred -----------------CC-----------CCCCCcEEEEEEEEEeCC-------CCcccccceeEEEcCCCEEEEECCC
Confidence 00 012357999999999976 3468999999999999999999999
Q ss_pred CCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCC
Q psy16196 709 GAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALT 775 (950)
Q Consensus 709 GSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~ 775 (950)
|||||||+++|+|+++|++|+|.+|| +|+||||||.||+|||||||....+++++..+++++.|+++
T Consensus 1322 GsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~ 1401 (1522)
T TIGR00957 1322 GAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLK 1401 (1522)
T ss_pred CCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcH
Confidence 99999999999999999999999998 69999999999999999999844467888899999999999
Q ss_pred chhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 776 PDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 776 ~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++++.+|+|+||+|||+|.||||||||||
T Consensus 1402 ~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1402 TFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999
No 33
>KOG0055|consensus
Probab=100.00 E-value=9.9e-47 Score=452.96 Aligned_cols=580 Identities=17% Similarity=0.200 Sum_probs=377.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 241 FGPTFLFGSSLKLIQDLLTFVSPQI---LSWLIEFVNEPNAPL--WKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRM 315 (950)
Q Consensus 241 ~~~~~~~~~l~~l~~~~~~~~~P~l---l~~li~~~~~~~~~~--~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (950)
-++.+++..+-.+...+-...+|++ .+++++.+....... ....-++..++...++.-++.........+.+.|.
T Consensus 23 ~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq 102 (1228)
T KOG0055|consen 23 DRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQ 102 (1228)
T ss_pred chhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666667778864 466666554332111 01111111111111110000000111123455555
Q ss_pred HHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchH-----hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16196 316 RSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDIT-----PYLNMLWSAPLQIGLALYFLWGILGPSVLAGL 389 (950)
Q Consensus 316 r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~-----~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl 389 (950)
-..++....+.+||-..+.++....|++++.|+.|+++ .+.. .++|.+-....-++++++.-|+ .+++.+
T Consensus 103 ~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~----Ltlv~l 178 (1228)
T KOG0055|consen 103 TARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK----LTLVML 178 (1228)
T ss_pred HHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 55666666777788888899999899999999999999 6642 2344443333334444444443 456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 390 AVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATS 469 (950)
Q Consensus 390 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~ 469 (950)
.+.+++......+++.+.+...+.+++..+--+...|.+++||+|-.|+-|+...++..+.-+.-.+...+..+...+..
T Consensus 179 ~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~ 258 (1228)
T KOG0055|consen 179 SFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGL 258 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666777777777777777777778899999999999999999998777766555555555444444443332
Q ss_pred HHHHhh--hHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-CC
Q psy16196 470 FIWSCA--PFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDL-DR 546 (950)
Q Consensus 470 ~~~~~~--p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~-~~ 546 (950)
.+..+. ......+.+|...+.. ...+++.+++.+...-+-...+.+..-.+..+..+.++..+|.+.++..+. ++
T Consensus 259 G~~~~~~~~~~a~~~WyG~~li~~--~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~ 336 (1228)
T KOG0055|consen 259 GFTFFLLFASYALAFWYGSTLILN--GGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDP 336 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCc
Confidence 221111 1122233455444433 346666555543222223345666666788999999999999998764321 11
Q ss_pred CcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccc
Q psy16196 547 GFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFF 626 (950)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (950)
.. . +. +.
T Consensus 337 ~~--------------------------------------~-----------------------------~~-~~----- 343 (1228)
T KOG0055|consen 337 YS--------------------------------------K-----------------------------GG-RV----- 343 (1228)
T ss_pred cc--------------------------------------c-----------------------------cC-Cc-----
Confidence 10 0 00 00
Q ss_pred cCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEc
Q psy16196 627 DTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVG 706 (950)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG 706 (950)
.....+.|+|+||+|+|+.. ++.++|+|+||+||+|+.+|+||
T Consensus 344 -------------------------------~~~~~g~ief~nV~FsYPsR------pdv~Il~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 344 -------------------------------LSSIKGEIEFRNVCFSYPSR------PDVKILKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred -------------------------------ccccccceEEEEEEecCCCC------CcchhhCCeEEEeCCCCEEEEEC
Confidence 01234679999999999873 35689999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHh-
Q psy16196 707 SVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC- 772 (950)
Q Consensus 707 ~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac- 772 (950)
|+||||||++++|.|+|+|++|+|.+|| +|+.|.|||.||++||+|||+||+|.. .-+++.+||
T Consensus 387 ~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da--t~~~i~~a~k 464 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA--TREEIEEAAK 464 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc--cHHHHHHHHH
Confidence 9999999999999999999999999998 699999999999999999999999863 234555555
Q ss_pred --cCCchhhhCCCCCcccccCCCCCCCHHHhhcc----------------------------------------------
Q psy16196 773 --ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV---------------------------------------------- 804 (950)
Q Consensus 773 --~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI---------------------------------------------- 804 (950)
..++++..||+|++|.|||+|..|||||||||
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV 544 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVV 544 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 45678999999999999999999999999999
Q ss_pred -----------------------------------------------------------------c--------------
Q psy16196 805 -----------------------------------------------------------------K-------------- 805 (950)
Q Consensus 805 -----------------------------------------------------------------~-------------- 805 (950)
+
T Consensus 545 aHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~ 624 (1228)
T KOG0055|consen 545 AHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGS 624 (1228)
T ss_pred eeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCc
Confidence 0
Q ss_pred -----------H-------------HHHHHHHHhc--ChhHHHHHHHHHHHHHHH----HHhHHHHHHHhhcCCCCcccC
Q psy16196 806 -----------W-------------QVYLHYLKSI--GLPLSMAAILLNIAFQGF----AIGSNIWLSVWSEDKSTIVNG 855 (950)
Q Consensus 806 -----------~-------------~vy~~Y~~~~--G~~~~~~~~~~~~~~~~~----~~~~~~WL~~W~~~~~~~~~~ 855 (950)
. ..+++-++.. .|+.+++-.+..++..+. ...-..-++-....++
T Consensus 625 ~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~----- 699 (1228)
T KOG0055|consen 625 NRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD----- 699 (1228)
T ss_pred cccccccccccccccccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh-----
Confidence 0 0022333332 133322222222221111 1111122222221111
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--cccccccccccCchHHh
Q psy16196 856 TQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDT--TPQGRIISRFSKDVDIL 933 (950)
Q Consensus 856 ~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~--tp~GrIlNRFS~D~~~i 933 (950)
+.-..+...|-.+|.++++...++.++..++|...+-+=.+++-.++++++++-++.|||. |- |+|.+|++.|...+
T Consensus 700 ~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~v 778 (1228)
T KOG0055|consen 700 DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNV 778 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHH
Confidence 0001123458889999999999999999999999999999999999999999999999996 45 99999999998754
Q ss_pred ----hhhhHHHHHHH
Q psy16196 934 ----DNAIPFCIKSW 944 (950)
Q Consensus 934 ----D~~Lp~~~~~~ 944 (950)
|+.|...+..+
T Consensus 779 r~~v~~rl~~vv~~~ 793 (1228)
T KOG0055|consen 779 RAAVGDRLSLVVQNI 793 (1228)
T ss_pred HHHHHHHHHHHHHHH
Confidence 55555444443
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-46 Score=489.43 Aligned_cols=460 Identities=17% Similarity=0.171 Sum_probs=302.7
Q ss_pred hHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTF--LFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMF 309 (950)
Q Consensus 232 sL~~~l~~~~~~~~--~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~ 309 (950)
+.++.+++..++.. ...+++.++..++....|+.++...+........ .. .+++.+++..++..++.....+...
T Consensus 902 ~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~--~~~~i~~~l~~~~~i~~~~~~~~~~ 978 (1622)
T PLN03130 902 KVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-PL--FYNLIYALLSFGQVLVTLLNSYWLI 978 (1622)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-hh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555533222 2223334445566667777777766642221111 11 1222222222222222211122234
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16196 310 RVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLA 387 (950)
Q Consensus 310 ~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~ 387 (950)
+.+.++-..++..+|+++++.+..++++.++|+++|++++|++. .+. ...+..+....+.++..+.++.....+..++
T Consensus 979 ~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~ 1058 (1622)
T PLN03130 979 MSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888899999999999999999999999999999999998 443 3444555555555554444433322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 388 GLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAA 467 (950)
Q Consensus 388 gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~ 467 (950)
.+.++++++.+..+..+..++.++..........+..+|.++|+++||.|++|+.|.+..++..+...+..........+
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333334444444444556667788899999999999999999998887776666655543322222212
Q ss_pred HHHHHHhhhHHHHHHHHHhHhhcCCCCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy16196 468 TSFIWSCAPFLVSLVSFAVYLLSDDSHVLD-----AQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQE 542 (950)
Q Consensus 468 ~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~-----~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 542 (950)
......+...++ ++..+.+.+..+ ...+ +..+-..+++...+..++..+......+..+.+|++||.++++.|
T Consensus 1139 l~~~l~~~~~~~-i~~~~~~~v~~~-~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1139 LAIRLETLGGLM-IWLTASFAVMQN-GRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111111111111 111122223222 1111 222333344445566777788888888999999999999998765
Q ss_pred cCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccc
Q psy16196 543 DLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSC 622 (950)
Q Consensus 543 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (950)
+..+... + .....
T Consensus 1217 ~E~~~~~-------------------------------------~-----------------------------~~~~~- 1229 (1622)
T PLN03130 1217 SEAPLVI-------------------------------------E-----------------------------NNRPP- 1229 (1622)
T ss_pred Ccccccc-------------------------------------c-----------------------------CCCCC-
Confidence 3321100 0 00000
Q ss_pred cccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEE
Q psy16196 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLV 702 (950)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lv 702 (950)
.. ...++.|+|+|++|+|++ +.+++|+||||+|++||++
T Consensus 1230 -----------------------~~-----------wp~~g~I~f~nVsf~Y~~-------~~~~VL~~is~~I~~GekV 1268 (1622)
T PLN03130 1230 -----------------------PG-----------WPSSGSIKFEDVVLRYRP-------ELPPVLHGLSFEISPSEKV 1268 (1622)
T ss_pred -----------------------CC-----------CCCCCcEEEEEEEEEeCC-------CCCceecceeEEEcCCCEE
Confidence 00 012357999999999975 3468999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHH
Q psy16196 703 AIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVI 769 (950)
Q Consensus 703 aIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi 769 (950)
||||++|||||||+++|+|+++|++|+|.+|| +|+||||||.||+|||||||.++++++++..++++
T Consensus 1269 aIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al 1348 (1622)
T PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL 1348 (1622)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998 69999999999999999999999988888999999
Q ss_pred HHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 770 ~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+.|+++++++.+|+|+||+|||+|.||||||||||
T Consensus 1349 ~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1349 ERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999
No 35
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9e-46 Score=480.83 Aligned_cols=410 Identities=16% Similarity=0.168 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGL 389 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl 389 (950)
+.+....+...+|+++++.+..++++.++|+++|++++|++. .+ +...+..+....+.++..+.++....++.+++.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455788999999999999999999999999999999999 54 3334455555556655555554443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy16196 390 AVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKE----AAYLN 465 (950)
Q Consensus 390 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~----~~~l~ 465 (950)
.+++++..+..++.+..+..++......+...+.++|.++|+++||.|++|+.+.++..+.-+...+.... .+++.
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333445555556666666777788999999999999999999998888776655444433222 22332
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 466 AATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 466 ~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
....++..+..+++.+ ++++....+...++++.+..++.+...+..|+..+...+..+..+.+|++||.++++..+.+
T Consensus 1186 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e 1263 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIAL--IGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHE 1263 (1560)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 2222222222111111 22222111122356666656666666788899999999999999999999999999643221
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
+....+.. + +. .... . ....+
T Consensus 1264 ~~~~~~~~-----------------~---~~------~~~~--------------~---------------~~~~~---- 1284 (1560)
T PTZ00243 1264 DMPELDEE-----------------V---DA------LERR--------------T---------------GMAAD---- 1284 (1560)
T ss_pred cccccccc-----------------c---cc------cccc--------------c---------------ccccc----
Confidence 10000000 0 00 0000 0 00000
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIV 705 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIV 705 (950)
.. + ....+........+ .....+.|+|+|++|+|++ +.+++|+||||+|++||++|||
T Consensus 1285 ---~~-~----~~~~~~~~~~~~~~-------~~~~~G~I~f~nVsf~Y~~-------~~~~vL~~vsf~I~~GekVaIV 1342 (1560)
T PTZ00243 1285 ---VT-G----TVVIEPASPTSAAP-------HPVQAGSLVFEGVQMRYRE-------GLPLVLRGVSFRIAPREKVGIV 1342 (1560)
T ss_pred ---cc-c----ccccccCCCcccCC-------CCCCCCeEEEEEEEEEeCC-------CCCceeecceEEECCCCEEEEE
Confidence 00 0 00000000000000 0112357999999999976 3467999999999999999999
Q ss_pred cCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHh
Q psy16196 706 GSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC 772 (950)
Q Consensus 706 G~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac 772 (950)
|++|||||||+++|+|+++|++|+|.++| +|+||||+|.||+|||||||..+.+++++..+++++.|
T Consensus 1343 GrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1343 GRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELV 1422 (1560)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHC
Confidence 99999999999999999999999999998 69999999999999999999988788888999999999
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+++++.+|+|+||.|||+|.||||||||||
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred CChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 99999999999999999999999999999999
No 36
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.9e-46 Score=481.76 Aligned_cols=387 Identities=17% Similarity=0.183 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16196 308 MFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSV 385 (950)
Q Consensus 308 ~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~ 385 (950)
..+.+.++-..++..+++|+++.+..++++.++|+++|++++|++. .+ +...+..+....+.++.++.++.....+..
T Consensus 974 ~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 1053 (1495)
T PLN03232 974 LISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL 1053 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888999999999999999999999999999999999 44 333444455555555444444433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 386 LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLN 465 (950)
Q Consensus 386 l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~ 465 (950)
++.+.+.+++..+..+..+..+..++..........+.++|.++|+++||.|++|+.|.++.++..+...+.........
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1495)
T PLN03232 1054 WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN 1133 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111112222222222233344555555666777788999999999999999999998887777666555443322222
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16196 466 AATSFIWSCAPFLVSLVSFAVYLLSDDSHVLD-----AQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMN 540 (950)
Q Consensus 466 ~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~-----~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~ 540 (950)
.+..........+ .++..+.+.+... ..++ +..+...+++...+..|+..+...+..+..+.+|++||.++++
T Consensus 1134 ~wl~~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~ 1211 (1495)
T PLN03232 1134 RWLTIRLETLGGV-MIWLTATFAVLRN-GNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211 (1495)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111111111111 1111122222221 1121 1112223444556777899999999999999999999999997
Q ss_pred cccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcc
Q psy16196 541 QEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILH 620 (950)
Q Consensus 541 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (950)
.++.++... + ....
T Consensus 1212 ~~~e~~~~~-------------------------------------~-----------------------------~~~~ 1225 (1495)
T PLN03232 1212 LPSEATAII-------------------------------------E-----------------------------NNRP 1225 (1495)
T ss_pred CCccccccc-------------------------------------c-----------------------------CCCC
Confidence 643221100 0 0000
Q ss_pred cccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCe
Q psy16196 621 SCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGT 700 (950)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~ 700 (950)
. . + ....+.|+|+|++|+|++ +.+++|+|+||+|+|||
T Consensus 1226 ~---------------------~--~------------~p~~g~I~f~nVsf~Y~~-------~~~~vL~~isl~I~~Ge 1263 (1495)
T PLN03232 1226 V---------------------S--G------------WPSRGSIKFEDVHLRYRP-------GLPPVLHGLSFFVSPSE 1263 (1495)
T ss_pred C---------------------C--C------------CCCCCcEEEEEEEEEECC-------CCCcccccceEEEcCCC
Confidence 0 0 0 011246999999999975 35689999999999999
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHH
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNK 767 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~ 767 (950)
++|||||+|||||||+++|+|+++|++|+|.+|| +|+||||||.||+|||||||.+++++++++.++
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~ 1343 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999998 699999999999999999999998888889999
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++.|+|+++++.+|+|++|+|||+|.||||||||||
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999
No 37
>KOG0057|consensus
Probab=100.00 E-value=1.5e-45 Score=405.91 Aligned_cols=434 Identities=20% Similarity=0.246 Sum_probs=307.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 251 LKLIQDLLTFVSPQILSWLIEFVNEPN-AP--LWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKA 327 (950)
Q Consensus 251 ~~l~~~~~~~~~P~ll~~li~~~~~~~-~~--~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~ 327 (950)
+.+..-.+....|++++.+++.+.+.+ .+ .......+.++++..++.+++.-.-......+..++-......+|++.
T Consensus 38 ~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~ 117 (591)
T KOG0057|consen 38 LLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHL 117 (591)
T ss_pred HHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345678889999999999885221 12 111122333444444444444333333334666777778888999999
Q ss_pred hcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHH
Q psy16196 328 LTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVM-VILIPVNGYVAT 404 (950)
Q Consensus 328 L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~-~~~~p~~~~~~~ 404 (950)
+.++.+++.+..+|++.+.|..-... .++ ...+..+....+++.+....+++..|++..+..... .........+..
T Consensus 118 ~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 118 MSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred HhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 99999999999999999988765555 332 234455666777888888889999997654433333 333333445566
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16196 405 RIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKI-RSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVS 483 (950)
Q Consensus 405 ~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~-R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~ 483 (950)
+-.+++++.+++.++-.+..-|.|.+-..||.|+-|++-.++.... ++.|-...+..+.+..++ +..... +....+
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~ln-fgQ~~i--Fsv~~~ 274 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLN-FGQKAI--FSVALT 274 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHH-HHHHHH--HHHHHH
Confidence 6777888888899999999999999999999999999877777654 334443333333332222 111110 111112
Q ss_pred HHhHhhcCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccccccc
Q psy16196 484 FAVYLLSDD--SHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYY 561 (950)
Q Consensus 484 f~~y~~~~~--~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~ 561 (950)
+..|....+ ...+|.......-+++..|+.|+..|...+..+.++..-++-....+..++. ..
T Consensus 275 ~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~-i~-------------- 339 (591)
T KOG0057|consen 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED-IQ-------------- 339 (591)
T ss_pred HHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh-hh--------------
Confidence 222222221 2346666655556678899999999999999998887766544332221110 00
Q ss_pred cchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCC
Q psy16196 562 PCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKD 641 (950)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (950)
....+ .
T Consensus 340 -------------------------------------------------------~~~~~---------i---------- 345 (591)
T KOG0057|consen 340 -------------------------------------------------------EAALP---------I---------- 345 (591)
T ss_pred -------------------------------------------------------hccCC---------c----------
Confidence 00000 0
Q ss_pred CcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 642 VDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
...++.|+|+|++|+|.+ ++++|+++||+||+||.+||||++||||||++++|+|
T Consensus 346 -----------------~~~~~~I~F~dV~f~y~~--------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 346 -----------------ELFGGSIEFDDVHFSYGP--------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred -----------------ccCCCcEEEEeeEEEeCC--------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 112346999999999986 6789999999999999999999999999999999999
Q ss_pred CCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHh---cCCchhhhCCCCC
Q psy16196 722 EMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC---ALTPDFEMLPAGD 785 (950)
Q Consensus 722 e~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac---~L~~Di~~Lp~Gd 785 (950)
+++ .+|+|.|+| .|||||||..|||+||-+||.+|++.. .+++|+++| ++++-+..||+||
T Consensus 401 F~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa--s~eeV~e~~k~a~~hd~i~~l~~GY 477 (591)
T KOG0057|consen 401 FFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA--SDEEVVEACKRAGLHDVISRLPDGY 477 (591)
T ss_pred Hhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc--CHHHHHHHHHHcCcHHHHHhccccc
Confidence 999 999999998 599999999999999999999999964 468888888 4677899999999
Q ss_pred cccccCCCCCCCHHHhhcc
Q psy16196 786 STEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 786 ~T~IGe~G~~LSGGQKQRI 804 (950)
+|.|||||..|||||||||
T Consensus 478 ~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 478 QTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hhhHhhcccccccchHHHH
Confidence 9999999999999999999
No 38
>KOG0056|consensus
Probab=100.00 E-value=1.6e-46 Score=402.97 Aligned_cols=442 Identities=22% Similarity=0.316 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 247 FGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKG-YFYAILLLVTSV--VQTLLLSTYFDRMFRVGMRMRSALISTI 323 (950)
Q Consensus 247 ~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~~~~~l~l~~~--~~~~~~~~~~~~~~~~~~~~r~~L~~~i 323 (950)
.+.++..+.-++...-|.+.+++++-+..+....+.. +.++.+.++-.. +..++.+.-.+...++..-....+-..+
T Consensus 219 ~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 219 FCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence 3444555566677888999999999887443222222 222222222111 1122222211112233334445567789
Q ss_pred HHHHhcccccccCCCChhhHHHHHhhcccccchHhH-hHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Q psy16196 324 YRKALTISNNARKETTVGEIVNLMSVDAQRMDITPY-LNMLWSAPLQIGLALYFLWG-ILGPSVLAGLAVMVILIPVNGY 401 (950)
Q Consensus 324 y~K~L~l~~~~~~~~~~G~ivnlms~Dv~r~~~~~~-~~~l~~~pl~i~i~~~lL~~-~lg~~~l~gl~~~~~~~p~~~~ 401 (950)
|+|++.|+...+-+..+|+++..|....+...+..+ ...+-...+.+++++++.+. .-.|..++.++++++..-+...
T Consensus 299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeee
Confidence 999999999999899999999988766555223222 22333444566666544433 3334555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy16196 402 VATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELS----FQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPF 477 (950)
Q Consensus 402 ~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~----f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~ 477 (950)
+...-.++++++...-.+--..-.+.|-+..++|.|+.|++ +.+.|.+..++|-+.+....+++...+.+..+.-
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgl- 457 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGL- 457 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-
Confidence 66666677777665544444566788999999999999986 4555666667777776666666665554433322
Q ss_pred HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccccccc
Q psy16196 478 LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSY 557 (950)
Q Consensus 478 l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~ 557 (950)
+.-..+.+|.+.. ..++.+.-...++++..|.+|++.+......++...+-++|+.+.+++++...+
T Consensus 458 -l~gsll~aY~Vt~--q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd---------- 524 (790)
T KOG0056|consen 458 -LAGSLLCAYRVTE--QTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD---------- 524 (790)
T ss_pred -hhhhheeeeeeee--ccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc----------
Confidence 1222355676663 345555322233466789999999999999999999999999999976543211
Q ss_pred cccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccc
Q psy16196 558 MVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSR 637 (950)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (950)
.| + . .|.
T Consensus 525 -------------------------~P--------------------------------~---a-------~pl------ 531 (790)
T KOG0056|consen 525 -------------------------LP--------------------------------G---A-------PPL------ 531 (790)
T ss_pred -------------------------CC--------------------------------C---C-------CCc------
Confidence 00 0 0 000
Q ss_pred cCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHH
Q psy16196 638 CGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS 717 (950)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~ 717 (950)
....+.|+|+|++|+|++ ++|+|+||||+++||+.+|+|||+|+||||+++
T Consensus 532 ---------------------~~~~G~i~fsnvtF~Y~p--------~k~vl~disF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 532 ---------------------KVTQGKIEFSNVTFAYDP--------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred ---------------------cccCCeEEEEEeEEecCC--------CCceeecceEEecCCcEEEEECCCCCchhHHHH
Confidence 112467999999999987 789999999999999999999999999999999
Q ss_pred HHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCC-hhHHHHHHHHhcCCchhhhCCC
Q psy16196 718 ALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHV-PRRYNKVIDACALTPDFEMLPA 783 (950)
Q Consensus 718 aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d-~~~y~~Vi~ac~L~~Di~~Lp~ 783 (950)
+|.++++..+|+|.+|| +||.||||..|||+||-.||.||+|-. .|...++.+|++.++-|-++|+
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 99999999999999998 699999999999999999999999853 2334456677888899999999
Q ss_pred CCcccccCCCCCCCHHHhhcc
Q psy16196 784 GDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 784 Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++|.|||||..||||+||||
T Consensus 663 gY~t~VGERGLkLSGGEKQRV 683 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRV 683 (790)
T ss_pred hhhhhhhhcccccCCcchhhH
Confidence 999999999999999999999
No 39
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.2e-44 Score=424.92 Aligned_cols=450 Identities=17% Similarity=0.127 Sum_probs=303.7
Q ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCK-TFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 233 L~~~l~~-~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
+++ +++ .+++.++.++++.++..++....|.+++.+++...... . ....+.+++++ +..++.....+...+.
T Consensus 8 l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 80 (555)
T TIGR01194 8 ILA-LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGLCL---LALLFRIGADIFPAYA 80 (555)
T ss_pred HHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 444 677 88999999999999999999999999998886421110 0 11111112221 1222222222334567
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
+.++...++..+|+|+++++...+++.++|++++++++|++. .++...+..+....+.+++++++++...+..+++.++
T Consensus 81 ~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~ 160 (555)
T TIGR01194 81 GMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITIS 160 (555)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 5544334444555555555555555444333444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHH--HHHHHH----HHHHHHHHHHHHHHHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWEL--SFQEQI----LKIRSKEIKVLKEAAYL 464 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~--~f~~~i----~~~R~~El~~~~~~~~l 464 (950)
++++.+.+..+..++.++..++..+..++..+.+.|.+.|+++||.|+.++ ...+++ ++.++...+..+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T TIGR01194 161 AIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAA 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445566666666777778888899999999999999999854 333333 33333333222211111
Q ss_pred HHHHHHHHHhhhHHHH-HHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy16196 465 NAATSFIWSCAPFLVS-LVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQED 543 (950)
Q Consensus 465 ~~~~~~~~~~~p~l~~-~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e 543 (950)
..+... +...... .+.++.+ . ..++.+..+..+.+...+..|+..+...+..+.++.+|.+||.++++.++
T Consensus 241 ~~~~~~---~~~~~~~~~~~~~~~---~--~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~ 312 (555)
T TIGR01194 241 ENFGQL---LFFLLIGCALFAAAM---F--ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFN 312 (555)
T ss_pred HHHHHH---HHHHHHHHHHHHHHH---h--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 111111 1111111 1111111 1 24666665555566677889999999999999999999999999986422
Q ss_pred CCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccc
Q psy16196 544 LDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCM 623 (950)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (950)
.++... +.+. .+ +....
T Consensus 313 ~~~~~~--------------------------------~~~~-~~----------------------------~~~~~-- 329 (555)
T TIGR01194 313 EPEPEL--------------------------------ELSD-AD----------------------------NVLLL-- 329 (555)
T ss_pred cccccc--------------------------------cccc-cc----------------------------ccccc--
Confidence 111100 0000 00 00000
Q ss_pred ccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEE
Q psy16196 624 SFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVA 703 (950)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lva 703 (950)
+ .....+.|+++|++|+|++.+ ...+++|+|+||++++|++++
T Consensus 330 --------------------------~-------~~~~~~~i~~~~v~f~y~~~~----~~~~~~l~~vs~~i~~G~~~a 372 (555)
T TIGR01194 330 --------------------------A-------HDKSVDSIELKDVHMNPKAPE----GSEGFALGPIDLRIAQGDIVF 372 (555)
T ss_pred --------------------------c-------cCCCCceEEEEEEEEEeCCCC----CCcCceeccceEEEcCCcEEE
Confidence 0 001124699999999997410 012469999999999999999
Q ss_pred EEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHH
Q psy16196 704 IVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVID 770 (950)
Q Consensus 704 IVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ 770 (950)
||||+|||||||+++|+|+++|++|+|.++| .++||+|+|++|++|+++|+ ..+.++++.+++++
T Consensus 373 ivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~ 450 (555)
T TIGR01194 373 IVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQ 450 (555)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHH
Confidence 9999999999999999999999999999987 48999999999999999995 23345667788899
Q ss_pred HhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 771 ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 771 ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++++++++.+|+|++|. .+|||||||||
T Consensus 451 ~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRl 479 (555)
T TIGR01194 451 RLEIADKVKIEDGGFSTT-----TALSTGQQKRL 479 (555)
T ss_pred HcCCchhhcccccccCCc-----ccCCHHHHHHH
Confidence 999999999999999994 89999999999
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.9e-43 Score=456.21 Aligned_cols=394 Identities=17% Similarity=0.181 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16196 309 FRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVL 386 (950)
Q Consensus 309 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l 386 (950)
.+.+.+.-..+...+++++++.+..+++..++|+++|+++.|++. .+ +...+..+....+.+++.+++++...++.++
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999 44 3444555555556666665555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHH----HHH
Q psy16196 387 AGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLK----EAA 462 (950)
Q Consensus 387 ~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~----~~~ 462 (950)
+.+.++++++.+..+..+..+..++.....++...+...|.++|+.+||.|++|+.+.++..+.-+...+... ..+
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444455555555566666777788899999999999999999999988888776554322211 112
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy16196 463 YLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQE 542 (950)
Q Consensus 463 ~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 542 (950)
++......+..+.-..+.++.++. ...+++.+..++++...+..++..+...+..+..+.+|++||.+|++.+
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l~~~~-------~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~ 1182 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFIAIGT-------NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLP 1182 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222111111111100111111111 1133334444455555677788888888999999999999999999764
Q ss_pred cCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccc
Q psy16196 543 DLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSC 622 (950)
Q Consensus 543 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (950)
+.++.... +. ......++. .....
T Consensus 1183 ~e~~~~~~---------------------------~~--~~~~~~~~~--------------------------~~~~~- 1206 (1490)
T TIGR01271 1183 QEEPRPSG---------------------------GG--GKYQLSTVL--------------------------VIENP- 1206 (1490)
T ss_pred Cccccccc---------------------------cc--ccccccccc--------------------------ccccC-
Confidence 32211000 00 000000000 00000
Q ss_pred cccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEE
Q psy16196 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLV 702 (950)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lv 702 (950)
..| ...| ..+.|+|+|++|+|++ +.+++|+||||+|++||++
T Consensus 1207 -------------------------~~~-----~~wp-~~g~I~f~nVs~~Y~~-------~~~~vL~~is~~I~~Gekv 1248 (1490)
T TIGR01271 1207 -------------------------HAQ-----KCWP-SGGQMDVQGLTAKYTE-------AGRAVLQDLSFSVEGGQRV 1248 (1490)
T ss_pred -------------------------CCC-----CCCC-CCCeEEEEEEEEEeCC-------CCcceeeccEEEEcCCCEE
Confidence 000 0001 2357999999999986 3578999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHH
Q psy16196 703 AIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVI 769 (950)
Q Consensus 703 aIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi 769 (950)
||||++|||||||+++|+|+++ .+|+|.++| +|+||||+|.||+|||||||..+.++++++.++++
T Consensus 1249 aIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL 1327 (1490)
T TIGR01271 1249 GLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVA 1327 (1490)
T ss_pred EEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHH
Confidence 9999999999999999999998 899999998 69999999999999999999887788889999999
Q ss_pred HHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 770 ~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+.|+|.++++.+|+|++|+|||+|.||||||||||
T Consensus 1328 ~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999999
No 41
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=382.12 Aligned_cols=454 Identities=20% Similarity=0.292 Sum_probs=300.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy16196 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAP--LWKGYFYAILLLVTSVVQTLLLSTYFDRM- 308 (950)
Q Consensus 232 sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~~~~~l~l~~~~~~~~~~~~~~~~- 308 (950)
.+++.++| .++.+++++++.++..+....-=++-+++|.--.-. .+ ...-+.-+++.=...+++++ ..|.-+.
T Consensus 6 p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia-g~~~~f~~~~p~a~VR~~aI~Rt~--~RY~ERlv 81 (573)
T COG4987 6 PYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA-GLAYIFNVMLPSAGVRGLAILRTA--ARYVERLV 81 (573)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 45666666 777788887777766555544444445555422110 11 11111112222233344443 3454443
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchH-h-HhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16196 309 -FRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDIT-P-YLNMLWSAPLQIGLALYFLWGILGPS 384 (950)
Q Consensus 309 -~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~-~-~~~~l~~~pl~i~i~~~lL~~~lg~~ 384 (950)
.....++-+.|+..+|+|...+++........||++|++..||+. ++.. . ..+.+.+..+.+++.+.+-+.-++.+
T Consensus 82 sH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~A 161 (573)
T COG4987 82 SHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLA 161 (573)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 356788999999999999999999988999999999999999999 6542 2 22333333333333333334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 385 VLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYL 464 (950)
Q Consensus 385 ~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l 464 (950)
.+.++...++.+.+-....++.++..++..+.+..--+...|.+.|+...++||.++.+.+.+.+.-+.-.+..++...+
T Consensus 162 lll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~ 241 (573)
T COG4987 162 LLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARF 241 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444444555555555555555666667789999999999999999998887765444433333343333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHhhc-CCCCCCC-hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCc
Q psy16196 465 NAATSFIWSCAPFLVSLVSFAVYLLS-DDSHVLD-AQIAFVSLSLFNILRFPLSML-PMLISQLVQASVSVKRINSFMNQ 541 (950)
Q Consensus 465 ~~~~~~~~~~~p~l~~~~~f~~y~~~-~~~~~L~-~~~aF~~lsl~~~l~~Pl~~l-~~~i~~~~~a~~s~~RI~~fL~~ 541 (950)
..+..++..+...++.+ ....+... .+.+..+ +..+...+..|..+ .++..+ |.++..+.+...|.+|+.+.++.
T Consensus 242 ~~~~~a~~~l~~g~~v~-~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 242 TGLSDAILLLIAGLLVI-GLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 33333332222211111 00111111 1111222 22221222222222 233333 37788999999999999998865
Q ss_pred ccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccc
Q psy16196 542 EDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHS 621 (950)
Q Consensus 542 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (950)
++.... + .+ +.
T Consensus 320 ~~e~~~------------------------------------~-~~-----------------------------~~--- 330 (573)
T COG4987 320 KPEVTF------------------------------------P-DE-----------------------------QT--- 330 (573)
T ss_pred CcccCC------------------------------------C-cc-----------------------------cc---
Confidence 432211 0 00 00
Q ss_pred ccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeE
Q psy16196 622 CMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTL 701 (950)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~l 701 (950)
+..+..++++|++|+|++ ++.++|+|+||++++||+
T Consensus 331 -------------------------------------~~~~~~l~~~~vsF~y~~-------~~~~~L~~~~l~l~~GEk 366 (573)
T COG4987 331 -------------------------------------ATTGQALELRNVSFTYPG-------QQTKALKNFNLTLAQGEK 366 (573)
T ss_pred -------------------------------------CCccceeeeccceeecCC-------CccchhhccceeecCCCe
Confidence 111126899999999987 467899999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHH
Q psy16196 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNK 767 (950)
Q Consensus 702 vaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~ 767 (950)
+||+|++|||||||+++|.|-++|++|+|..+| .|++++|.+.+|++|+|||+..++|. ++|..++
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~ 446 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWA 446 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 999999999999999999999999999999987 69999999999999999999999986 4567889
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++..+|++.++..|+|++|.+||+|.+||||||||+
T Consensus 447 aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 447 ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred HHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 9999999999999999999999999999999999998
No 42
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.7e-43 Score=380.06 Aligned_cols=445 Identities=20% Similarity=0.280 Sum_probs=328.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 232 sL~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
....+.+..++..++..+++..+-.++.+..|+.+-++.|-+-... .......+.++.+..++++.++...-.....|+
T Consensus 12 ~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~-s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 12 NLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSR-SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888999999999999999999999999988764321 122233444444555666666665555667799
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchH------hHhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDIT------PYLNMLWSAPLQIGLALYFLWGILGPS 384 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~------~~~~~l~~~pl~i~i~~~lL~~~lg~~ 384 (950)
+.++-..|...+|+-+.+.+..........+.++ |.+. ..+. .++..-| .|+-+ ..+|++.-.+|+.
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDaPW-~P~yl-~v~fl~Hp~lG~~ 164 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDAPW-MPLYL-AVIFLFHPWLGLI 164 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCCch-HHHHH-HHHHHHHHHHHHH
Confidence 9999999999999998765554433333334443 4444 2221 1122223 34444 3456667778998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 385 VLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYL 464 (950)
Q Consensus 385 ~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l 464 (950)
+++|.++++++..++-++.++ --++..+..-+|....+..+.+..+|+.+|..+...+++.+.....++...+..-.
T Consensus 165 a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 888888777777666555543 33445566778888999999999999999999999999988877776655544332
Q ss_pred ----HHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16196 465 ----NAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMN 540 (950)
Q Consensus 465 ----~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~ 540 (950)
..+.-.+-.+.. ..++..|.|..+. +.+|+...+.+--+..-.-.|+......+.++..++.|.+|++++|.
T Consensus 242 ~~~~~~~Sr~~Rm~lQ--s~iLg~GA~Lvi~--ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~ 317 (580)
T COG4618 242 NGAFGALSRALRMALQ--SAVLGLGAWLVIK--GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLA 317 (580)
T ss_pred HHHHHHHHHHHHHHHH--HHHHhcceeeEEc--CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 3456778888885 46888877666545556667999999999999999999999999997
Q ss_pred cccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcc
Q psy16196 541 QEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILH 620 (950)
Q Consensus 541 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (950)
....... ....
T Consensus 318 ~~p~~~~---------------------------------------------------------------------~m~L 328 (580)
T COG4618 318 ELPAAAE---------------------------------------------------------------------RMPL 328 (580)
T ss_pred hCccccC---------------------------------------------------------------------CCCC
Confidence 5321111 0000
Q ss_pred cccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCe
Q psy16196 621 SCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGT 700 (950)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~ 700 (950)
|..++.+.++++++.-++ .++|+|+||||++++|+
T Consensus 329 --------------------------------------P~P~g~L~Ve~l~~~PPg-------~~~pil~~isF~l~~G~ 363 (580)
T COG4618 329 --------------------------------------PAPQGALSVERLTAAPPG-------QKKPILKGISFALQAGE 363 (580)
T ss_pred --------------------------------------CCCCceeeEeeeeecCCC-------CCCcceecceeEecCCc
Confidence 223457899999997655 46799999999999999
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHh-cCCCCChhHHH
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIV-FGKTHVPRRYN 766 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIl-fg~~~d~~~y~ 766 (950)
-++||||+|||||||.++|.|-++|.+|+|.+|| +|||.||+.-||.|||+|||. |+++-|+++.-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIi 443 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHH
Confidence 9999999999999999999999999999999998 799999999999999999995 77676765444
Q ss_pred HHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 767 KVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 767 ~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.++++.++-|-.||+||||.|||.|.+|||||||||
T Consensus 444 eAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 444 EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred HHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 44444455677999999999999999999999999999
No 43
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.8e-42 Score=411.74 Aligned_cols=432 Identities=18% Similarity=0.159 Sum_probs=297.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVS-PQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
+++.+++.+++.++..+++.++..++.++. |++.+.++|.+... ....+.+++.+++..++. ....+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVT----LGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 678888999999999999999999888874 77888888865321 111111111111111111 1122233456
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
+.++...++..+|+|+++++...+++..+|++++++++|++. ......+..++...+.+++++++++..-++.+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 778888899999999999999999999999999999999998 5543345667777777777777776665556666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhc--cHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYA--WELSFQEQILK----IRSKEIKVLKEAAYL 464 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~--~E~~f~~~i~~----~R~~El~~~~~~~~l 464 (950)
++++.+.+..++.++..+..++..+..+++.+.+.|.++|+++++..+ .++.+.++.++ .++...+.. .+
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD----TF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH----HH
Confidence 555555566677888888888888899999999999999999997433 22334444433 333333322 11
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHhhcCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy16196 465 NAATSFIWSCAPFLVSLVSFAVYLLSDD---SHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQ 541 (950)
Q Consensus 465 ~~~~~~~~~~~p~l~~~~~f~~y~~~~~---~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~ 541 (950)
......+..... ++.++.+.+..+ ...++....+.. +...+..|+..+...+..+.++.++.+||.+++..
T Consensus 232 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~ 305 (547)
T PRK10522 232 HLSAVNWSNIMM----LGAIGLVFYMANSLGWADTNVAATYSL--TLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA 305 (547)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhcCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111111111111 111121211111 112222222222 22235689999999999999999999999998754
Q ss_pred ccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccc
Q psy16196 542 EDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHS 621 (950)
Q Consensus 542 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (950)
++.++. .....
T Consensus 306 ~~~~~~---------------------------------------------------------------------~~~~~ 316 (547)
T PRK10522 306 PYKAEF---------------------------------------------------------------------PRPQA 316 (547)
T ss_pred cccccc---------------------------------------------------------------------ccccc
Confidence 321110 00000
Q ss_pred ccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeE
Q psy16196 622 CMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTL 701 (950)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~l 701 (950)
....+.++++|++|+|++ ++++|+|+||+|++|++
T Consensus 317 -------------------------------------~~~~~~i~~~~v~f~y~~--------~~~~l~~i~~~i~~G~~ 351 (547)
T PRK10522 317 -------------------------------------FPDWQTLELRNVTFAYQD--------NGFSVGPINLTIKRGEL 351 (547)
T ss_pred -------------------------------------cCcCceEEEEEEEEEeCC--------CCeEEecceEEEcCCCE
Confidence 001136999999999974 45799999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHH
Q psy16196 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKV 768 (950)
Q Consensus 702 vaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~V 768 (950)
++||||+|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++|++|| +.+.+++..+++
T Consensus 352 ~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~ 428 (547)
T PRK10522 352 LFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKW 428 (547)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHH
Confidence 999999999999999999999999999999987 5999999999999999999 455666677778
Q ss_pred HHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 769 IDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 769 i~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.+++.++++. |+|. .+|.+|||||||||
T Consensus 429 ~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl 458 (547)
T PRK10522 429 LERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRL 458 (547)
T ss_pred HHHcCCchhhhc-cccC-----CCCCCCCHHHHHHH
Confidence 888777766653 4442 25899999999999
No 44
>KOG0054|consensus
Probab=100.00 E-value=3.3e-41 Score=415.35 Aligned_cols=384 Identities=21% Similarity=0.259 Sum_probs=292.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16196 308 MFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSV 385 (950)
Q Consensus 308 ~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~ 385 (950)
....+.+.-..|...++++++|-|..+++.+++|.|+|+.|.|++. .+ +...+..+....++++.++.++.....+..
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fl 961 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFL 961 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 3456788888899999999999999999999999999999999999 43 445555666666776666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHH----
Q psy16196 386 LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEA---- 461 (950)
Q Consensus 386 l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~---- 461 (950)
++.+.+.++++.++.+..+..+..++-....+.--.+..+|.++|+-+|++|+.|+.|.++.++.-+...+.....
T Consensus 962 i~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~ 1041 (1381)
T KOG0054|consen 962 IAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISAN 1041 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5555555555555555555555554444445566678999999999999999999999998887766655543322
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy16196 462 AYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQ 541 (950)
Q Consensus 462 ~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~ 541 (950)
+++..-...+.++ ++..++ .+.+...++..+++.+-.++++--.+..-+..+......+-.-++|++||.+|.+.
T Consensus 1042 RWla~Rle~ig~~---~v~~~a--l~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~ 1116 (1381)
T KOG0054|consen 1042 RWLAVRLELLGNL---VVLIAA--LFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDI 1116 (1381)
T ss_pred HHHHHHHHHHHHH---HHHHHH--HHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcC
Confidence 2222222222221 111111 12222212226678777777776677777888999999999999999999999986
Q ss_pred ccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccc
Q psy16196 542 EDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHS 621 (950)
Q Consensus 542 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (950)
|++.+. ..+ . ..+
T Consensus 1117 ~~E~p~-~~~-----------------------------------------------------------------~-~~p 1129 (1381)
T KOG0054|consen 1117 PSEAPL-EIE-----------------------------------------------------------------E-SRP 1129 (1381)
T ss_pred CCCCCC-CCc-----------------------------------------------------------------C-CCC
Confidence 543221 000 0 000
Q ss_pred ccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeE
Q psy16196 622 CMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTL 701 (950)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~l 701 (950)
| +. .| .++.|+|+|++.+|.+ +.++|||||||+|+|||+
T Consensus 1130 --------p---------------~~----------WP-~~G~I~f~~~~~RYrp-------~lp~VLk~is~~I~p~eK 1168 (1381)
T KOG0054|consen 1130 --------P---------------PS----------WP-SKGEIEFEDLSLRYRP-------NLPLVLKGISFTIKPGEK 1168 (1381)
T ss_pred --------C---------------CC----------CC-CCCeEEEEEeEEEeCC-------CCcchhcCceEEEcCCce
Confidence 0 00 02 2468999999999987 568999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHH
Q psy16196 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKV 768 (950)
Q Consensus 702 vaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~V 768 (950)
+||||+||||||||+++|.|..+|.+|+|.||| +++..||||.||+||||.|+.-.++|.++..+++
T Consensus 1169 VGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~A 1248 (1381)
T KOG0054|consen 1169 VGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEA 1248 (1381)
T ss_pred EEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHH
Confidence 999999999999999999999999999999998 7999999999999999999999999999999999
Q ss_pred HHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 769 IDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 769 i~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.|+|++.++++|+|.|++|.|+|.|+|-||||-+
T Consensus 1249 Le~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1249 LERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred HHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 999999999999999999999999999999999988
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.4e-41 Score=403.88 Aligned_cols=474 Identities=15% Similarity=0.153 Sum_probs=311.0
Q ss_pred HHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-chh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 235 GALCKTFGP-----TFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAP-LWK-GYFYAILLLVTSVVQTLLLSTYFDR 307 (950)
Q Consensus 235 ~~l~~~~~~-----~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~-g~~~~~~l~l~~~~~~~~~~~~~~~ 307 (950)
..+++++++ .++..+++.++.+++.+..|.+.+.+++.+...+.. ... .+.+++++++..++.++. .+.
T Consensus 83 ~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~----~~~ 158 (659)
T TIGR00954 83 LKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI----KYL 158 (659)
T ss_pred HHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 344555665 466777888888999999999999999987643211 111 111222222222222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHH
Q psy16196 308 MFRVGMRMRSALISTIYRKA----LTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGIL 381 (950)
Q Consensus 308 ~~~~~~~~r~~L~~~iy~K~----L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~l 381 (950)
..++..++|..+...++++. ...+..++++ .+|++++++++|++. .+ +...+..+...++.++++++.|+..+
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~ 237 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTAL 237 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555555444 4444445554 689999999999999 44 45566677778888888888887756
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q psy16196 382 GPSV-LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKE 460 (950)
Q Consensus 382 g~~~-l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~ 460 (950)
+|.. ++.++.+++.+.+..++.+++.+..++..+..++-....+|.++|+++||+|+.|+...++.++.-++-.+...+
T Consensus 238 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~ 317 (659)
T TIGR00954 238 GSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317 (659)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 333344445555566777888888888888888999999999999999999999998777666554444444433
Q ss_pred HH----HHHHHHHHHHHhhhHHHHHHHHHhHhhcCCC---CCCChhh--H-HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 461 AA----YLNAATSFIWSCAPFLVSLVSFAVYLLSDDS---HVLDAQI--A-FVSL-SLFNILRFPLSMLPMLISQLVQAS 529 (950)
Q Consensus 461 ~~----~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~---~~L~~~~--a-F~~l-sl~~~l~~Pl~~l~~~i~~~~~a~ 529 (950)
.. .+..+..++.......+.++..+..++...+ +.++... + |.+. .++..+..|+..+...+..+.++.
T Consensus 318 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~ 397 (659)
T TIGR00954 318 IIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLA 397 (659)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3333333322211112222222332232111 3466543 2 4432 345677899999999999999999
Q ss_pred HHHHHHHHhcCcccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHh
Q psy16196 530 VSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARR 609 (950)
Q Consensus 530 ~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (950)
++.+||.++++.++..+..... .+ ..+..++
T Consensus 398 ~~~~Ri~~ll~~~~~~~~~~~~-------------------------~~---~~~~~~~--------------------- 428 (659)
T TIGR00954 398 GFTARVDTLLQVLDDVKSGNFK-------------------------RP---RVEEIES--------------------- 428 (659)
T ss_pred HHHHHHHHHHHHHHHHhccccc-------------------------cc---ccccccc---------------------
Confidence 9999999999764321110000 00 0000000
Q ss_pred hhhhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcc
Q psy16196 610 LHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTL 689 (950)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL 689 (950)
..... .. .+..+ + ........+.++++|++|.|++ ++++|
T Consensus 429 -------~~~~~------------------~~-~~~~~--~----~~~~~~~~~~i~~~nv~~~~~~--------~~~il 468 (659)
T TIGR00954 429 -------GREGG------------------RN-SNLVP--G----RGIVEYQDNGIKFENIPLVTPN--------GDVLI 468 (659)
T ss_pred -------ccccc------------------cc-ccccc--c----ccccccCCCeEEEEeeEEECCC--------CCeee
Confidence 00000 00 00000 0 0000112246999999999964 34799
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEeccCcCCCccHHHHHhcCCC--------
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQQAWIQNATLRDNIVFGKT-------- 759 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q~pwL~ngTIreNIlfg~~-------- 759 (950)
+|+||+|++||.++|+||+|||||||+++|.|++++.+|+|.+++ +|+||+|+|+++++|++|||.++..
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 999999999999999999999999999999999999999999864 7999999999999999999999742
Q ss_pred CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 760 HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 760 ~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++++.+++++.+++++.++. |.|++|..+ .|.+|||||||||
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl 591 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRI 591 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHH
Confidence 345566788888899888877 999999987 5679999999999
No 46
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-37 Score=328.80 Aligned_cols=377 Identities=23% Similarity=0.315 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccccc-h-HhHhHHHHHHHHHHHHHHHHHHHHHhHHH-HHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMD-I-TPYLNMLWSAPLQIGLALYFLWGILGPSV-LAG 388 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r~~-~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~-l~g 388 (950)
+......+....|+|++.|+..+..+..+|.+..-+..-.+-.+ . ...+..+....+++.+.+.++|+.-||.. ++.
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 33444456667899999999988888888876543322222211 1 12233444566788888888888877654 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHhHHHHHHHhhhhHHhhhccHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy16196 389 LAVMVILIPVNGYVATRIRNLQIKQMKSKD-ARVKLMNEVLSGIKVLKLYAWELSFQEQILK----IRSKEIKVLKEAAY 463 (950)
Q Consensus 389 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~d-~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~----~R~~El~~~~~~~~ 463 (950)
++.+++.......+...-...++ .|+..| +-.....+.|-+-.++|.|+-|+.+.++..+ .++.+++......+
T Consensus 90 ~vtv~lY~~ftv~~s~wr~~~rr-~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 90 LVTVILYLLFTVIVSDWRTDFRR-LMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHhheeehhhhHHHHH-hhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 44444333333333333333343 344444 4445677899999999999999987666554 44445544444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy16196 464 LNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQED 543 (950)
Q Consensus 464 l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e 543 (950)
++.....+.... +....+.+..-+.. +.+|.+.....-++...+..|++.+......+.++..-+++..+.+..+-
T Consensus 169 Ln~gQ~~I~~~~--l~~~m~~s~~~v~~--g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~ 244 (497)
T COG5265 169 LNFGQTAIFSTG--LRVMMTMSALGVEE--GQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEA 244 (497)
T ss_pred HHHhhHHHHHHH--HHHHHhhcHHHHhh--ccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccch
Confidence 444333332221 11222233333332 45777665555567778899999999999999999999999998886542
Q ss_pred CCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccc
Q psy16196 544 LDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCM 623 (950)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (950)
...+ .| .
T Consensus 245 ~v~d-----------------------------------~p--------------------------------d------ 251 (497)
T COG5265 245 EVSD-----------------------------------AP--------------------------------D------ 251 (497)
T ss_pred hhcc-----------------------------------CC--------------------------------C------
Confidence 1111 00 0
Q ss_pred ccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEE
Q psy16196 624 SFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVA 703 (950)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lva 703 (950)
..+ +. +...+.+.|+|++|.|++ .+|+|+|+||++++|++++
T Consensus 252 ----a~~------------------L~--------~~~~g~v~F~~V~F~y~~--------~r~iL~~isf~i~~g~tvA 293 (497)
T COG5265 252 ----APP------------------LW--------PVRLGAVAFINVSFAYDP--------RRPILNGISFTIPLGKTVA 293 (497)
T ss_pred ----Ccc------------------cc--------ccccceEEEEEEEeeccc--------cchhhcCccccccCccEEE
Confidence 000 00 112357999999999987 6899999999999999999
Q ss_pred EEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCCC-hhHHHHHH
Q psy16196 704 IVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHV-PRRYNKVI 769 (950)
Q Consensus 704 IVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~d-~~~y~~Vi 769 (950)
||||+|+||||++++|.++|++++|.|.++| .||.|||+.-|||+||..||.||+|.. ++.-..+.
T Consensus 294 iVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa 373 (497)
T COG5265 294 IVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAA 373 (497)
T ss_pred EEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHH
Confidence 9999999999999999999999999999998 599999999999999999999999853 34456667
Q ss_pred HHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 770 ~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.|+.+|+|++|.|||||..||||+||||
T Consensus 374 ~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 374 EAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 77788999999999999999999999999999999
No 47
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.9e-26 Score=241.02 Aligned_cols=437 Identities=18% Similarity=0.188 Sum_probs=268.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
++..++|.+++.++....+.+...+... .++..+-+++.+.+........+.+++++..++.+.... .....+|
T Consensus 3 ~ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~---lg~t~~g 76 (546)
T COG4615 3 LLLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQ---LGLTTLG 76 (546)
T ss_pred hHHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3456889999998887777666555433 344444444433322111111222222222222121111 1122345
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cchHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
.+.-..++..+.+|++.-|....++...+.++..++.|+.. ...+..++++..+.+-+..+..+|++..+..+++.++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55666666777888888888888888899999999999999 65566677777777777777888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWEL--SFQEQIL-KIRSKEIKVLKEAAYLNAAT 468 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~--~f~~~i~-~~R~~El~~~~~~~~l~~~~ 468 (950)
+++.+..+.+...+.-++..+..+.-|+-.+..+.+++|-|..|...-.. .+.+.+. ..++.+-... ....+.. .
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~-~~n~f~~-l 234 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHII-RANTFHL-L 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhh-hhhHHHH-H
Confidence 77777777777777777777777888999999999999999999876322 1222211 1111111111 1111110 0
Q ss_pred HHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy16196 469 SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGF 548 (950)
Q Consensus 469 ~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 548 (950)
...|. .-++..+++...|+...-+ .-+...+.|....+-.++.|+.+....+|.+..|.++++||.++-..|+..+.
T Consensus 235 a~~~~-ni~l~~lIGlvf~lal~~~-w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~- 311 (546)
T COG4615 235 AVNWS-NIMLLGLIGLVFWLALSLG-WASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF- 311 (546)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC-
Confidence 11111 1112223333333332211 11111222322223358999999999999999999999999998543322111
Q ss_pred ccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccC
Q psy16196 549 TIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDT 628 (950)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (950)
+ . .+.
T Consensus 312 -----------------------------------~--------------------------------~-~q~------- 316 (546)
T COG4615 312 -----------------------------------P--------------------------------R-PQA------- 316 (546)
T ss_pred -----------------------------------C--------------------------------C-CCc-------
Confidence 0 0 000
Q ss_pred CcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCC
Q psy16196 629 TPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSV 708 (950)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~v 708 (950)
.|+ -..++++|+.|+|.+ ..+-+..||++|++||++-|+|..
T Consensus 317 -----------------------------~p~-~~~lelrnvrfay~~--------~~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 317 -----------------------------FPD-WKTLELRNVRFAYQD--------NAFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred -----------------------------CCc-ccceeeeeeeeccCc--------ccceecceeeEEecCcEEEEECCC
Confidence 011 246999999999986 448899999999999999999999
Q ss_pred CCChhHHHHHHcCCCcccCCeeEeCCe-------------EEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcC
Q psy16196 709 GAGKSSLVSALCGEMDKISGRVNTKGS-------------IAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACAL 774 (950)
Q Consensus 709 GSGKSTLL~aLLGe~~~~~G~I~i~g~-------------Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L 774 (950)
|||||||+++|.|.+.|++|+|.++|+ ++-|.-|-|||..++ .++. -.++..++-++.-++
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999983 344555667776543 2222 223333333333333
Q ss_pred CchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 775 TPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 775 ~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
..-.+ +-+|--+ -..||-|||.|+
T Consensus 434 ~~kts-l~d~~fs-----~~kLStGQkKRl 457 (546)
T COG4615 434 AHKTS-LNDGRFS-----NLKLSTGQKKRL 457 (546)
T ss_pred hhhhc-ccCCccc-----ccccccchHHHH
Confidence 22222 2222222 246999999998
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=280.45 Aligned_cols=128 Identities=25% Similarity=0.417 Sum_probs=110.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
+.|+++|+++.|.+ ..+++|+||||+|++|++++|+||+|||||||+++|+|+++ |++|+|.++|
T Consensus 79 ~~i~~~nls~~y~~-------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 79 NVFEIRNFNFWYMN-------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred ceEEEEeeEEEecC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 47999999999974 24579999999999999999999999999999999999997 4699988654
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCCC----hh----HHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTHV----PR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~d----~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
+++||||+||+|++||+|||.|+..++ ++ .|++++++|+|.+++ ++.++++|.
T Consensus 152 ~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~ 224 (329)
T PRK14257 152 RSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGN 224 (329)
T ss_pred cccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcc
Confidence 599999999999999999999875322 22 267788888876554 478999999
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 225 ~LSgGqkqRl 234 (329)
T PRK14257 225 ALSGGQQQRL 234 (329)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 49
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.3e-26 Score=250.68 Aligned_cols=133 Identities=25% Similarity=0.392 Sum_probs=122.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.|+++|++++|++ +..++|+|+||+|++||+++|+||+|||||||+++|.|+++ .+|+|.++|
T Consensus 2 ~i~~~nls~~~~~-------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTE-------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCC-------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHH
Confidence 4889999999974 34579999999999999999999999999999999999998 799999987
Q ss_pred ----eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|+|++|++|++||+.+..++++++.+++++.++|++.++.+|+|++|.++|+|.+||||||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl 147 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM 147 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 5999999999999999999975445667788899999999999999999999999999999999999999
No 50
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=4.7e-23 Score=236.48 Aligned_cols=377 Identities=19% Similarity=0.235 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCChh------hHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHH
Q psy16196 307 RMFRVGMRMRSALISTIYRKALTISNNARKETTVG------EIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLW 378 (950)
Q Consensus 307 ~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G------~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~ 378 (950)
...++..+.|..|...+.+|-++-...++... .| ..=.++..|+.. .+ .......+..+.++++....+||
T Consensus 109 L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~-~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw 187 (604)
T COG4178 109 LNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQ-AGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILW 187 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHh-cccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999888764433222 22 123588888877 44 33444556667777777777888
Q ss_pred HHHhHHHH---------HHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHh-hhHHhHHHHHHHhhhhHHhhhccHHH
Q psy16196 379 GILGPSVL---------AGL--AVMVILIPVNG----YVATRIRNLQIKQMKS-KDARVKLMNEVLSGIKVLKLYAWELS 442 (950)
Q Consensus 379 ~~lg~~~l---------~gl--~~~~~~~p~~~----~~~~~~~~~~~~~~~~-~d~Rv~~~~E~L~gIk~IK~~~~E~~ 442 (950)
.+.|...+ .|. .+++++++... +++|...+...+..+. .|-|. ....+.++...|-+|+-|+.
T Consensus 188 ~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~-~Lvrv~enaE~IAly~GE~~ 266 (604)
T COG4178 188 SLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY-SLVRVRENAEAIALYRGEKV 266 (604)
T ss_pred HccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-HHHHHHhhHHHHHHhcCcHH
Confidence 65553211 111 12233333333 4444444433333322 33333 34556777888899998876
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHH
Q psy16196 443 FQEQILKIRSKEIKVLK-------EAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPL 515 (950)
Q Consensus 443 f~~~i~~~R~~El~~~~-------~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl 515 (950)
-.+++++.-..=++..+ +..+.......+..+.|.++. ...| .. +.++-+..-.+-..|+.+...+
T Consensus 267 Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~---ap~~--f~--g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 267 ERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIA---APRY--FS--GQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhc---cHhh--hc--CcChHHHHHHHHHHHHHHHHHH
Confidence 55555443332222111 112222222222223333221 1122 22 3466666666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccC---CCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchh
Q psy16196 516 SMLPMLISQLVQASVSVKRINSFMNQEDL---DRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVI 592 (950)
Q Consensus 516 ~~l~~~i~~~~~a~~s~~RI~~fL~~~e~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (950)
..+...++.+.+-.+++.|+.+|-+.-|. ++.. +.....
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~-----------------------------------~~~~~~--- 381 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEK-----------------------------------PARTGR--- 381 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccc-----------------------------------cCcccc---
Confidence 99999999999999999999999754221 1100 000000
Q ss_pred hhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEE
Q psy16196 593 ENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTF 672 (950)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf 672 (950)
..... ... +..|.++|++.
T Consensus 382 ------------------------~~~~~------------------------------------~~~-~~~i~~~nl~l 400 (604)
T COG4178 382 ------------------------RIDFD------------------------------------DNA-DHGITLENLSL 400 (604)
T ss_pred ------------------------ccccc------------------------------------ccc-cceeEEeeeeE
Confidence 00000 011 35799999999
Q ss_pred EecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC-C-eEEEEeccCcCCCccH
Q psy16196 673 TWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK-G-SIAFVPQQAWIQNATL 750 (950)
Q Consensus 673 ~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~-g-~Iayv~Q~pwL~ngTI 750 (950)
.-++ ..+.|+++||+|++|+-+.|.||+|||||||+++|.|.+|--+|+|... + .+-|+||.|++..||+
T Consensus 401 ~~p~--------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 401 RTPD--------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTL 472 (604)
T ss_pred ECCC--------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccH
Confidence 8664 4589999999999999999999999999999999999999999999887 3 4899999999999999
Q ss_pred HHHHhcCCC---CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 751 RDNIVFGKT---HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 751 reNIlfg~~---~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
||-|++.+. ++++.+.+|++.|+|.+-.+.|.+-++ =..-|||||||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRl 524 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRL 524 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHH
Confidence 999999753 678899999999999988888766554 3457999999999
No 51
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=6.4e-26 Score=236.33 Aligned_cols=133 Identities=62% Similarity=1.032 Sum_probs=123.8
Q ss_pred EEEEeeEEEecCCCCCCCCCC---CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEec
Q psy16196 665 LVIENGTFTWERNTEGEGAES---PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ 741 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~---~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q 741 (950)
++++|+++.|.+ .. +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|+|+||+|
T Consensus 1 l~~~~l~~~~~~-------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDS-------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCC-------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEec
Confidence 468999999964 12 37999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 742 QAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 742 ~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|.+++.|++|||.++..+++++.+++.+++++.+.+..+|.|++|.+++++.+||||||||+
T Consensus 74 ~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv 136 (204)
T cd03250 74 EPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI 136 (204)
T ss_pred CchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH
Confidence 999999999999999877766677888889999999999999999999999999999999999
No 52
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=5.3e-24 Score=231.19 Aligned_cols=134 Identities=39% Similarity=0.722 Sum_probs=123.2
Q ss_pred CCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEE
Q psy16196 660 SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV 739 (950)
Q Consensus 660 ~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv 739 (950)
+..+.++++|+++.+ .++|+|+||+|++|++++|+||+|||||||+++|.|.++|.+|+|.++|.|+|+
T Consensus 35 ~~~~~l~i~nls~~~-----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv 103 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFS 103 (282)
T ss_pred CCCCeEEEEEEEEec-----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEE
Confidence 344679999999952 359999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 740 PQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 740 ~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|++++++.|++|||.++..+++.++.++++++.+.+.++.+|.+++|.+++++.+||||||||+
T Consensus 104 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 104 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred eCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 99999999999999999866655667788888999888999999999999999999999999999
No 53
>KOG0060|consensus
Probab=99.91 E-value=8.3e-22 Score=219.07 Aligned_cols=416 Identities=19% Similarity=0.202 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhh---HHHHHhhcccc-cc-hHhHhHHHHHHHHHHHH
Q psy16196 298 TLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGE---IVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGL 372 (950)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~---ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i 372 (950)
+.+.....+....+..+.|..|...+|++-++-..-+.-....+. -=.+++.|+++ .. .......+..+|+.++.
T Consensus 136 s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~ 215 (659)
T KOG0060|consen 136 SLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVY 215 (659)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeeh
Confidence 334444445556777899999999999988764432221111122 23588999999 43 45556677778888888
Q ss_pred HHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHH
Q psy16196 373 ALYFLWGILGPSVLAGLAV-MVILIPVNGYVATRIRNLQIKQMK-SKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKI 450 (950)
Q Consensus 373 ~~~lL~~~lg~~~l~gl~~-~~~~~p~~~~~~~~~~~~~~~~~~-~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~ 450 (950)
..+.++...||...+.+.. +++...++..+.+-+.+...+..+ .-|-|.+. +++..+-..|-+|+-++.-...++..
T Consensus 216 Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~~ 294 (659)
T KOG0060|consen 216 YTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQR 294 (659)
T ss_pred hhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe-eeeeecchhhhhhccCchHHHHHHHH
Confidence 8999999888755443322 222334444444434333333222 33444433 45667778899999877555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---hHhhcC-CCCCCChhhHHHHH----HHHHHHHHHHHHHHHHH
Q psy16196 451 RSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFA---VYLLSD-DSHVLDAQIAFVSL----SLFNILRFPLSMLPMLI 522 (950)
Q Consensus 451 R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~---~y~~~~-~~~~L~~~~aF~~l----sl~~~l~~Pl~~l~~~i 522 (950)
-+.-++.++......-...++.+..-.+..++... .-.+.+ ....++++..+.-+ ..+..+...+..+...-
T Consensus 295 f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~ 374 (659)
T KOG0060|consen 295 FRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLS 374 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 33333333322222212222212111222211111 101111 12346665443332 12333445566677777
Q ss_pred HHHHHHHHHHHHHHHhcCcc-cCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhc
Q psy16196 523 SQLVQASVSVKRINSFMNQE-DLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAK 601 (950)
Q Consensus 523 ~~~~~a~~s~~RI~~fL~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (950)
..+.+-.+-..||.++.+.- +..... + +.
T Consensus 375 ~~ls~lsGyt~Ri~el~~~l~d~~~~~-----------------------------------~--~~------------- 404 (659)
T KOG0060|consen 375 RDLSRLSGYTHRIGELMEVLDDLSSGS-----------------------------------Q--EC------------- 404 (659)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHhccCC-----------------------------------c--ch-------------
Confidence 77777778888998887531 111100 0 00
Q ss_pred hhhHHHHhhhhhhhhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCC
Q psy16196 602 GTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGE 681 (950)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~ 681 (950)
++.. +...+ ...+.....+. +.....++.|+++++++.-+.
T Consensus 405 -~~~~----------~~~~E--------~~~~l~~~~G~---------------~~~~~~Dn~i~~e~v~l~tPt----- 445 (659)
T KOG0060|consen 405 -TMEE----------EELGE--------AEWGLSLPPGS---------------GKAEPADNAIEFEEVSLSTPT----- 445 (659)
T ss_pred -hhhh----------hhhhh--------hhhccCCCCCC---------------cccccccceEEeeeeeecCCC-----
Confidence 0000 00000 00000000000 000112368999999998765
Q ss_pred CCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC--C---eEEEEeccCcCCCccHHHHHhc
Q psy16196 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--G---SIAFVPQQAWIQNATLRDNIVF 756 (950)
Q Consensus 682 ~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~--g---~Iayv~Q~pwL~ngTIreNIlf 756 (950)
++....+|+||+|+.|+-+-|+||+|||||||++.+-|.++..+|++... | .+-|+||.|+...||+||-++|
T Consensus 446 --~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIY 523 (659)
T KOG0060|consen 446 --NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIY 523 (659)
T ss_pred --CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeec
Confidence 34456778999999999999999999999999999999999999999864 3 4999999999999999999999
Q ss_pred CC--------CCChhHHHHHHHHhcCCchhhhCCCCCcccc-cCCCCCCCHHHhhcccH
Q psy16196 757 GK--------THVPRRYNKVIDACALTPDFEMLPAGDSTEI-GEKGINLSGGQKQRVKW 806 (950)
Q Consensus 757 g~--------~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~I-Ge~G~~LSGGQKQRI~~ 806 (950)
.. ..++++..+.++-.+|.+-++. .+|.++++ =|=+-.||+|++||+++
T Consensus 524 P~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 524 PLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred cCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHH
Confidence 71 1345678888888888765555 45666544 45588899999999943
No 54
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=5.3e-24 Score=224.90 Aligned_cols=134 Identities=31% Similarity=0.450 Sum_probs=122.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. .+.++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRP-------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCC-------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHH
Confidence 4789999999974 235799999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|+|.++++|++|||.+......++..+.++.+++.+.+..+|.|++|..++++.+||||||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~ 148 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL 148 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH
Confidence 4899999999999999999988766666666777788888888999999999999999999999999999
No 55
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=6.6e-24 Score=223.54 Aligned_cols=131 Identities=51% Similarity=0.920 Sum_probs=120.2
Q ss_pred EEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------
Q psy16196 666 VIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------- 734 (950)
Q Consensus 666 ~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----------- 734 (950)
.+.|+.|+|+. +.++++|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGS--------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCC--------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccccc
Confidence 46788999975 35799999999999999999999999999999999999999999998864
Q ss_pred ------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|+|.+++.|++|||.++.+++.++.+++++++++.+.++.+|.|++|.++.+..+|||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI 149 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH
Confidence 3899999999999999999999877666677889999999888999999999999999999999999999
No 56
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=1.2e-23 Score=226.97 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=122.9
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------- 734 (950)
.+.++++|++++|+. ...++|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~-------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYEN-------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCC-------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC
Confidence 357999999999964 235799999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|+|+++++|++||+.......++..+++++.+++.+.++.+|.|++|.+++++.+||||||||+
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl 165 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLF 165 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHH
Confidence 4899999999999999999987654455567778888889889999999999999999999999999999
No 57
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=2e-23 Score=222.86 Aligned_cols=133 Identities=32% Similarity=0.515 Sum_probs=116.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. ...++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKP-------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCC-------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHH
Confidence 468899999964 245799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++++++.|++|||.++.+ ...++..+.++...+.+.++.+|.|.++..+.++.+|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv 147 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI 147 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence 3999999999999999999998654 333344445555667777899999999999999999999999999
No 58
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=214.65 Aligned_cols=124 Identities=31% Similarity=0.443 Sum_probs=107.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------e
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------S 735 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------~ 735 (950)
.+.+++++..|.. ..+|+||||+|++||+++|+|||||||||||++|.|+.+|++|+|.++| .
T Consensus 3 ~l~i~~v~~~f~~---------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG---------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc---------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCC
Confidence 4789999999863 5799999999999999999999999999999999999999999999987 6
Q ss_pred EEEEeccCcCC-CccHHHHHhcCCCCC-------hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 736 IAFVPQQAWIQ-NATLRDNIVFGKTHV-------PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 736 Iayv~Q~pwL~-ngTIreNIlfg~~~d-------~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
++||.|++-|| --||+|||.+|-+.. +++-++.++..+|...-+..|. .|||||||||...
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHH
Confidence 89999997665 469999999986541 3467778888899888888885 7999999999543
No 59
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.2e-23 Score=221.39 Aligned_cols=133 Identities=31% Similarity=0.507 Sum_probs=119.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+. ..++++|+||++++|+.++|+||+|||||||+++|.|+.+|.+|+|.++|
T Consensus 2 ~l~~~~l~~~~~~--------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDE--------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCC--------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHH
Confidence 4789999999963 34699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|+++++++|++||+.++.+. ..++.++.++.+.+.+.++.+|.|+++.++.+..+|||||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv 148 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLL 148 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHH
Confidence 49999999999999999999987653 34556677778888888999999999999999999999999999
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=3.9e-23 Score=218.07 Aligned_cols=134 Identities=37% Similarity=0.586 Sum_probs=120.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. ...++++|+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~-------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPN-------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCC-------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHH
Confidence 3789999999964 235799999999999999999999999999999999999999999999887
Q ss_pred ----eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|+++++..|++||+.++.+ .++++.++.++.+++.+.++.+|.|++|.+.++..+||||||||+
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHH
Confidence 4899999999999999999988754 344566777888888888999999999999999999999999999
No 61
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.5e-23 Score=225.67 Aligned_cols=121 Identities=31% Similarity=0.481 Sum_probs=107.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.|+++|++..|.+ .. +|+||||+|++||+++++||+||||||||+.|.|+.+|++|+|.++|
T Consensus 3 ~i~l~~v~K~yg~--------~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGS--------FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCC--------ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 4899999999975 22 99999999999999999999999999999999999999999999988
Q ss_pred --eEEEEeccCcCC-CccHHHHHhcCCCCC-------hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQ-NATLRDNIVFGKTHV-------PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~-ngTIreNIlfg~~~d-------~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.||+|+|+.-|+ +.||+|||.||.... +++.++|.+.++|++.++..|. .|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHH
Confidence 699999998886 559999999996542 4566777777788888888774 7999999999
No 62
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.9e-23 Score=218.34 Aligned_cols=133 Identities=35% Similarity=0.595 Sum_probs=118.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. .+.++++|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPG-------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCC-------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHH
Confidence 468899999964 234799999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++++++.|++|||.++.+ +.++.+.+..+.+.+.+.++.+|.|.++..+.+..+|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv 147 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRI 147 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHH
Confidence 3899999999999999999998754 344556677777888888999999999999999999999999999
No 63
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.6e-23 Score=218.80 Aligned_cols=132 Identities=34% Similarity=0.570 Sum_probs=117.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. +.++|+|+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDP--------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCC--------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHH
Confidence 368899999963 34699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++++++.|++||+.++.+. .++..++.++.+.+.+.++.+|.|++|.++.+..+||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl 146 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV 146 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 38999999999999999999987542 33345666777888888899999999999999999999999999
No 64
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.2e-23 Score=202.17 Aligned_cols=126 Identities=24% Similarity=0.391 Sum_probs=103.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC-----CeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS-----GRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~-----G~I~i~g--- 734 (950)
..++++|+++.|.. ..+|+|||++|++++.+|++||+||||||||+++-+..+... |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYYGD---------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEECc---------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeec
Confidence 46899999999964 579999999999999999999999999999999999888775 8898887
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC---Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH---VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~---d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
+||+|.|.|--|..||.|||.||-.. .+ +.-++.++.++|.+.++. ...+.+..
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~ 149 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALG 149 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccC
Confidence 69999999999999999999999432 11 234444555667544431 23467889
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||+||+
T Consensus 150 LSGGQQQRL 158 (253)
T COG1117 150 LSGGQQQRL 158 (253)
T ss_pred CChhHHHHH
Confidence 999999999
No 65
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=210.06 Aligned_cols=121 Identities=32% Similarity=0.594 Sum_probs=101.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.|+++|++|.|+. . ++|+||||+|++|++++|+||.|||||||+++|||.++|.+|+|.+.|
T Consensus 4 ~i~v~nl~v~y~~--------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 4 MIEVENLTVSYGN--------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred EEEEeeeEEEECC--------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccC
Confidence 5899999999975 3 699999999999999999999999999999999999999999999875
Q ss_pred -eEEEEecc---CcCCCccHHHHHhcCCCC-----------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -SIAFVPQQ---AWIQNATLRDNIVFGKTH-----------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -~Iayv~Q~---pwL~ngTIreNIlfg~~~-----------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
+||||||. .|=|..||+|=+..|... |.+.-+++++..++.+ +. +..|| .||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~~------~r~i~----~LSGG 143 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-LR------DRQIG----ELSGG 143 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-hh------CCccc----ccCcH
Confidence 59999996 488999999999988432 2255566666666653 22 12343 59999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|+|||
T Consensus 144 Q~QRV 148 (254)
T COG1121 144 QKQRV 148 (254)
T ss_pred HHHHH
Confidence 99999
No 66
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.88 E-value=1.9e-22 Score=215.53 Aligned_cols=134 Identities=33% Similarity=0.532 Sum_probs=117.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+.. .+.++|+|+||++++|+.++|+||+|||||||+++|.|.++|.+|+|.++|
T Consensus 1 l~i~~l~~~~~~~------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHH
Confidence 3678999999641 135799999999999999999999999999999999999999999999877
Q ss_pred ---eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++++++.|++|||.++.+. ..+..++.++.+.+.+.++.+|.|.++.++.+..+||||||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 148 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRI 148 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHH
Confidence 49999999999999999999987543 33455666777788888899999999999999999999999999
No 67
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=9.3e-23 Score=202.06 Aligned_cols=121 Identities=29% Similarity=0.474 Sum_probs=103.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.|+++|++.+|.. ..+|+|||++|++||.++|+||+||||||||++|.|.-++++|+|.++|
T Consensus 2 mi~i~~l~K~fg~---------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD---------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC---------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhH
Confidence 3789999999964 5799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeccCcCC-CccHHHHHhcCC------CC--ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAWIQ-NATLRDNIVFGK------TH--VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pwL~-ngTIreNIlfg~------~~--d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
++|+|.|+.-|| +-|+-|||..+- +- .+++-.+.++..+|.+-.+..|. .|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHH
Confidence 478999999988 679999999862 21 22344555666777777777774 799999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 142 qQRV 145 (240)
T COG1126 142 QQRV 145 (240)
T ss_pred HHHH
Confidence 9999
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=4.5e-22 Score=210.86 Aligned_cols=137 Identities=31% Similarity=0.461 Sum_probs=116.0
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------- 734 (950)
.+.++++|+++.|+.. ...++|+|+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC
Confidence 3579999999999641 124699999999999999999999999999999999999999999999886
Q ss_pred ------eEEEEeccCcCCCccHHHHHhcCCCCC-hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHV-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ngTIreNIlfg~~~d-~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|++.+++.|++|||.++.... .....+..+...+++.++.+|.|.++.+.++..+|||||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv 159 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV 159 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 489999999999999999999875421 1222333334456677899999999999999999999999999
No 69
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.86 E-value=6.7e-22 Score=206.64 Aligned_cols=121 Identities=29% Similarity=0.479 Sum_probs=99.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++|+|++ +++|+||||+|++|++++|+||.||||||||++|.|.++|.+|+|.++|
T Consensus 2 ~L~~~~ls~~y~~---------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG---------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC---------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHH
Confidence 3789999999974 6899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEeccC-cCCCccHHHHHhcCCC-C-------Chh---HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 ----SIAFVPQQA-WIQNATLRDNIVFGKT-H-------VPR---RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 ----~Iayv~Q~p-wL~ngTIreNIlfg~~-~-------d~~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
++||+||++ --+.-||+|=+.+|+- + .++ .-+++++.+++++.-+. .=..|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccCh
Confidence 699999995 5568899999999952 1 222 33444666666543322 1246999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 142 GerQrv 147 (258)
T COG1120 142 GERQRV 147 (258)
T ss_pred hHHHHH
Confidence 999999
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.86 E-value=5.1e-22 Score=192.22 Aligned_cols=121 Identities=29% Similarity=0.493 Sum_probs=105.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+|+||+..|+. ++++|+||||+|++||++-++||+|||||||+++|.++..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~--------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPG--------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCC--------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccc
Confidence 789999999986 57799999999999999999999999999999999999999999999986
Q ss_pred ------eEEEEeccCc-CCCccHHHHHhcCC-----CCC--hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAW-IQNATLRDNIVFGK-----THV--PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pw-L~ngTIreNIlfg~-----~~d--~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+||+|.||-- |.+-|+.||+.|.- +-+ .++-.++++-.+|.+-...||. .||||+
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchH
Confidence 7999999976 56789999999853 221 2455667777788888888985 799999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
+|||
T Consensus 143 QQRv 146 (223)
T COG2884 143 QQRV 146 (223)
T ss_pred HHHH
Confidence 9999
No 71
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.86 E-value=6.2e-22 Score=215.97 Aligned_cols=122 Identities=27% Similarity=0.450 Sum_probs=105.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++.+|.+ ..+++||||+|++||++++.||+||||||+|++|.|+..|++|+|.++|
T Consensus 4 ~~l~i~~v~k~yg~---------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD---------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC---------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 46999999999963 5799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEeccCcCC-CccHHHHHhcCCC-----CCh---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ---SIAFVPQQAWIQ-NATLRDNIVFGKT-----HVP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ---~Iayv~Q~pwL~-ngTIreNIlfg~~-----~d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
.|++|.|+--|| +.||+|||.||.. -++ ++.+++++..+|.+.-+..| ..|||||+|
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHH
Confidence 699999998887 7899999999965 222 36666666777766555544 689999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
||
T Consensus 144 RV 145 (352)
T COG3842 144 RV 145 (352)
T ss_pred HH
Confidence 99
No 72
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=1.6e-21 Score=199.88 Aligned_cols=124 Identities=31% Similarity=0.465 Sum_probs=100.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++..|..+. ...++|+||||+|++||+++|+||+||||||||+.|-|.-.|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~-----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG-----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC-----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHH
Confidence 46788888886421 124799999999999999999999999999999999999999999999987
Q ss_pred -------eEEEEeccCcC-CCccHHHHHhc----CCCCC---hhHHHHHHHHhcCCchhh-hCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQAWI-QNATLRDNIVF----GKTHV---PRRYNKVIDACALTPDFE-MLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~pwL-~ngTIreNIlf----g~~~d---~~~y~~Vi~ac~L~~Di~-~Lp~Gd~T~IGe~G~~LSG 798 (950)
+||||.|+.-| .+-|++|||.. ..... +++.++.++..+|.+... ..| ..|||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSG 145 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSG 145 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCH
Confidence 59999999765 57799999984 32222 345666666667765554 444 47999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 146 GqqQRV 151 (226)
T COG1136 146 GQQQRV 151 (226)
T ss_pred HHHHHH
Confidence 999999
No 73
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.86 E-value=3.5e-22 Score=201.62 Aligned_cols=120 Identities=27% Similarity=0.467 Sum_probs=103.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+|+|+|+.|.+ ..+++|+||+|++|++++++||+||||||+|+.|.|.++|++|+|.++|
T Consensus 2 I~~~nvsk~y~~---------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN---------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC---------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHH
Confidence 689999999964 5799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEeccCcCC-CccHHHHHhcC---CCCCh----hHHHHHHHHhcCCc--hhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ---SIAFVPQQAWIQ-NATLRDNIVFG---KTHVP----RRYNKVIDACALTP--DFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ---~Iayv~Q~pwL~-ngTIreNIlfg---~~~d~----~~y~~Vi~ac~L~~--Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
+||||-|+.-|| +.||.|||..- ..+++ ++-++.++-.+|+. ..+..|+ .|||||+
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQ 141 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQ 141 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchh
Confidence 699999998887 78999999874 23444 45566667777864 4666774 7999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
|||
T Consensus 142 QRV 144 (309)
T COG1125 142 QRV 144 (309)
T ss_pred hHH
Confidence 999
No 74
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=1.7e-21 Score=203.15 Aligned_cols=119 Identities=30% Similarity=0.532 Sum_probs=100.9
Q ss_pred EEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------eE
Q psy16196 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------SI 736 (950)
Q Consensus 667 ~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----------~I 736 (950)
++|+++.|+. ..++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++| .|
T Consensus 2 ~~~l~~~~~~--------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKK--------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCC--------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcce
Confidence 5788888853 25799999999999999999999999999999999999999999999887 48
Q ss_pred EEEeccC--cCCCccHHHHHhcCCCC---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 737 AFVPQQA--WIQNATLRDNIVFGKTH---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 737 ayv~Q~p--wL~ngTIreNIlfg~~~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|++|+| .+++.|++||+.++.+. ++++.+++++.+++.+..+..| ..||||||||+
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 135 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRL 135 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHH
Confidence 9999998 57889999999986432 2346677888888876655555 37999999999
No 75
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=3.5e-21 Score=201.13 Aligned_cols=117 Identities=31% Similarity=0.536 Sum_probs=100.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.++++|++++|+. ...++++|+||+|++|+.++|+||+|||||||+++|+|+++|.+|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAP-------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCC-------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH
Confidence 46899999999964 234799999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|+|.++++|++|||.+..++++ +++.+++. ++++...||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~---~~~~~~l~---------------~~~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALR---------------VSEGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCH---HHHHHHhh---------------ccCCCCcCCHHHHHHH
Confidence 4999999999999999999987655433 33444432 3567889999999999
No 76
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=3.5e-22 Score=188.85 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=95.9
Q ss_pred CCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccH
Q psy16196 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATL 750 (950)
Q Consensus 684 ~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTI 750 (950)
.+.++|+||||++.+||.++|+||+|||||||++.+.-..+|++|++...| +|+||.|+|-||-+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 367899999999999999999999999999999999999999999999987 6999999999999999
Q ss_pred HHHHhcC-----CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 751 RDNIVFG-----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 751 reNIlfg-----~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
.||+.|. +..|.+.....++..+| +++....+-.+||||+||||..
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAl 144 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIAL 144 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHH
Confidence 9999996 33455544444444443 3456667788999999999943
No 77
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.9e-21 Score=218.11 Aligned_cols=122 Identities=28% Similarity=0.465 Sum_probs=103.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. +.++|+|+||+|++|++++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~l~i~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDG--------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCC--------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 3789999999943 35699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCC-CccHHHHHhcCCCC---C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQ-NATLRDNIVFGKTH---V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~-ngTIreNIlfg~~~---d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|++.+| +.|++|||.|+... + +++.+++++.++|.+..+..| .+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHH
Confidence 499999999999 57999999997431 2 133456666667766655555 48999999999
No 78
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=1.5e-21 Score=205.35 Aligned_cols=122 Identities=29% Similarity=0.492 Sum_probs=99.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. ...++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~-------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPG-------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecC-------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhH
Confidence 678999999964 234699999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+|++|+|.++. .|++|||.++.. .+ +++.+++++.+++.+..+..| .+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHH
Confidence 3899999999886 699999987521 11 234455666666655444433 4799999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 144 ~qrv 147 (216)
T TIGR00960 144 QQRV 147 (216)
T ss_pred HHHH
Confidence 9999
No 79
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.85 E-value=2.1e-21 Score=195.02 Aligned_cols=98 Identities=31% Similarity=0.516 Sum_probs=90.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEecc
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQQ 742 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q~ 742 (950)
++++|++++|+. ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++| +++|++|+
T Consensus 1 i~~~~~~~~~~~--------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPD--------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCC--------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCC
Confidence 468899999964 35699999999999999999999999999999999999999999999987 89999999
Q ss_pred CcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++.|++|||.++ +...||||||||+
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv 100 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRL 100 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHH
Confidence 999999999999874 3478999999999
No 80
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=203.73 Aligned_cols=122 Identities=30% Similarity=0.508 Sum_probs=108.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++|.|++ ..++|+|+||+|++|+.++|+|++|||||||++.+.|.++|++|.|.++|
T Consensus 3 ~i~~~~l~~~y~~--------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPG--------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCC--------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhH
Confidence 4789999999986 36899999999999999999999999999999999999999999998876
Q ss_pred -----eEEEEeccC--cCCCccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQA--WIQNATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+|+||.|+| .+|..||.|.|.||-. .. +++-+++++.|++.+..+..| .+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcc
Confidence 499999999 8999999999999843 22 245677888889988776666 5899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 144 kqRv 147 (235)
T COG1122 144 KQRV 147 (235)
T ss_pred eeeH
Confidence 9999
No 81
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.3e-21 Score=212.44 Aligned_cols=128 Identities=23% Similarity=0.351 Sum_probs=100.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++|.|+... ..+.++|+|+||+|++|+.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~----~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ----ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred ceEEEEeEEEEeCCCC----cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 5689999999996410 0124699999999999999999999999999999999999999999999864
Q ss_pred ---------------------eEEEEeccC--cCCCccHHHHHhcCCC---CChh----HHHHHHHHhcCCchhhhCCCC
Q psy16196 735 ---------------------SIAFVPQQA--WIQNATLRDNIVFGKT---HVPR----RYNKVIDACALTPDFEMLPAG 784 (950)
Q Consensus 735 ---------------------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~~----~y~~Vi~ac~L~~Di~~Lp~G 784 (950)
.|+||+|+| ++|+.||+|||.|+.. .+++ +.++.++.++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--------- 166 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD--------- 166 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC---------
Confidence 279999998 8999999999998742 1222 222233333332
Q ss_pred CcccccCCCCCCCHHHhhcc
Q psy16196 785 DSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 785 d~T~IGe~G~~LSGGQKQRI 804 (950)
+...+.++.+|||||||||
T Consensus 167 -~~~~~~~~~~LSgGqkqRv 185 (320)
T PRK13631 167 -DSYLERSPFGLSGGQKRRV 185 (320)
T ss_pred -hhHhcCCcccCCHHHHHHH
Confidence 1235677889999999999
No 82
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.84 E-value=3.9e-21 Score=202.53 Aligned_cols=124 Identities=30% Similarity=0.421 Sum_probs=98.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+... ...++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~-----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG-----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC-----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhH
Confidence 36789999996410 015799999999999999999999999999999999999999999998865
Q ss_pred -------eEEEEeccCcCCCc-cHHHHHhcCCCC---C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -------SIAFVPQQAWIQNA-TLRDNIVFGKTH---V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -------~Iayv~Q~pwL~ng-TIreNIlfg~~~---d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.++|++|++.++.. |++|||.++..+ + +++.+++++.++|++.+ ..+..+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHH
Confidence 38999999998876 999999986432 1 12344555555554333 3344689999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 145 ~~qrv 149 (218)
T cd03255 145 QQQRV 149 (218)
T ss_pred HHHHH
Confidence 99999
No 83
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.84 E-value=4.1e-21 Score=203.69 Aligned_cols=122 Identities=24% Similarity=0.385 Sum_probs=98.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC-----cccCCeeEeCC-----
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM-----DKISGRVNTKG----- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~-----~~~~G~I~i~g----- 734 (950)
++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.+ +|.+|+|.++|
T Consensus 1 i~~~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD---------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC---------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence 468899999953 46999999999999999999999999999999999999 99999999876
Q ss_pred ----------eEEEEeccCcCCCccHHHHHhcCCCC----C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ----------SIAFVPQQAWIQNATLRDNIVFGKTH----V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
+|+|++|++.+++.|++||+.++... . +++-+++++.+++.+.+...++ +.+|
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~L 142 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGL 142 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccC
Confidence 38999999999999999999886321 1 1233455555566544433221 5689
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|||||||+
T Consensus 143 SgG~~qrv 150 (227)
T cd03260 143 SGGQQQRL 150 (227)
T ss_pred CHHHHHHH
Confidence 99999999
No 84
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=5.1e-21 Score=192.22 Aligned_cols=125 Identities=30% Similarity=0.483 Sum_probs=101.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.|+++|++-.|+. +..+|+||||+|++||+++|+||+||||||||++|.|..++++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--------~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 3 MIEVKNLSKTYPG--------GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74 (258)
T ss_pred eEEEeeeeeecCC--------CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH
Confidence 4899999999975 67899999999999999999999999999999999999999999999987
Q ss_pred -------eEEEEeccCcCC-CccHHHHHhcCCC------------CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 -------SIAFVPQQAWIQ-NATLRDNIVFGKT------------HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 -------~Iayv~Q~pwL~-ngTIreNIlfg~~------------~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
+|||++|++-|- ..|+-+|++.|+- +.++...++++|-. .+ |..-..-.|-.
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLe------rv--gi~~~A~qra~ 146 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE------RV--GILDKAYQRAS 146 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHH------Hc--CcHHHHHHHhc
Confidence 699999998865 5699999998753 23444455554431 11 22222345778
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||+|||
T Consensus 147 ~LSGGQQQRV 156 (258)
T COG3638 147 TLSGGQQQRV 156 (258)
T ss_pred cCCcchhHHH
Confidence 9999999999
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.2e-21 Score=208.94 Aligned_cols=122 Identities=30% Similarity=0.447 Sum_probs=103.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. ..++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKD--------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCC--------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHH
Confidence 4889999999963 34699999999999999999999999999999999999999999999877
Q ss_pred ----eEEEEeccC--cCCCccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ----SIAFVPQQA--WIQNATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+|++|+| .+++.|++|||.|+.. .+ +++.+++++.++|.+..+..| ..||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHH
Confidence 489999998 6889999999998732 22 234566777777765555555 37999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
|||
T Consensus 145 qrv 147 (274)
T PRK13647 145 KRV 147 (274)
T ss_pred HHH
Confidence 999
No 86
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4.3e-21 Score=201.43 Aligned_cols=120 Identities=28% Similarity=0.413 Sum_probs=97.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS---------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC---------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhh
Confidence 367899999953 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccCcCCC-ccHHHHHhcCCCC---Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQN-ATLRDNIVFGKTH---VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~n-gTIreNIlfg~~~---d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|+|.++. .|++||+.++... +. ++.+++++.+++.+..+. ...+||||||||+
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl 139 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRV 139 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 4899999998875 6999999876321 21 234455566666544433 3358999999999
No 87
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=5.1e-21 Score=199.35 Aligned_cols=125 Identities=27% Similarity=0.399 Sum_probs=103.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|++++++..|.... .....+|+||||+|++|+..+|||++|+|||||++++-+.-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~----~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTG----TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCC----CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 78999999987510 0135689999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCCC----ChhHHHHHHHHhc---CCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKTH----VPRRYNKVIDACA---LTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~~----d~~~y~~Vi~ac~---L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+|++++|.+-|++ .|+.|||.|.-+. .++..++|.+.+. |.+-.+..| .+|||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQ 146 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQ 146 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcch
Confidence 6999999999998 8999999997432 2355666766664 444444444 6899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 147 KQRV 150 (339)
T COG1135 147 KQRV 150 (339)
T ss_pred hhHH
Confidence 9999
No 88
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.1e-21 Score=203.44 Aligned_cols=120 Identities=26% Similarity=0.392 Sum_probs=96.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG---------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhh
Confidence 367899999953 4699999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCCc-cHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ------SIAFVPQQAWIQNA-TLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ng-TIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.|+||+|++.++.. |++||+.++.. .+. ++.+++++.++|.+..+ .+..+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHH
Confidence 38999999999886 99999988632 122 22344555555543332 233579999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 141 ~~qrv 145 (235)
T cd03261 141 MKKRV 145 (235)
T ss_pred HHHHH
Confidence 99999
No 89
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=5.9e-21 Score=201.41 Aligned_cols=124 Identities=31% Similarity=0.451 Sum_probs=99.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------eE
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SI 736 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------~I 736 (950)
++++|+++.|+... ...++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~~~-----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG-----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC-----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcE
Confidence 36789999996310 115799999999999999999999999999999999999999999999977 59
Q ss_pred EEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 737 AFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 737 ayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+||+|+|.++. .|++|||.++.. .+ .++.+++++.+++.+.++..| .+||||||||+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl 140 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRV 140 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHH
Confidence 99999999887 799999987532 11 233455666666654444433 57999999998
No 90
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.84 E-value=5.2e-21 Score=200.82 Aligned_cols=118 Identities=32% Similarity=0.531 Sum_probs=96.4
Q ss_pred EEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------eEEE
Q psy16196 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SIAF 738 (950)
Q Consensus 667 ~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------~Iay 738 (950)
++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++| .|+|
T Consensus 2 ~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG---------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC---------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEE
Confidence 5788888853 4699999999999999999999999999999999999999999999987 3999
Q ss_pred EeccCcC---CCccHHHHHhcCCCC-----------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 739 VPQQAWI---QNATLRDNIVFGKTH-----------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 739 v~Q~pwL---~ngTIreNIlfg~~~-----------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++|++.+ ++.|++|||.++... ++++.+++++.+++.++++. ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999876 668999999886431 12344556666666544433 3458999999999
No 91
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=3.1e-21 Score=185.09 Aligned_cols=119 Identities=29% Similarity=0.487 Sum_probs=101.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
+.++++.|+|+. .+ -..+++|++||.+||+||+||||||||++|.|+..|.+|+|.++|
T Consensus 2 l~L~~V~~~y~~--------~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 2 LALDDVRFSYGH--------LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE 70 (231)
T ss_pred ccccceEEeeCc--------ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc
Confidence 456788999975 22 246899999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCC-ccHHHHHhcCCC----C---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 735 -SIAFVPQQAWIQN-ATLRDNIVFGKT----H---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 735 -~Iayv~Q~pwL~n-gTIreNIlfg~~----~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
.++++.||.-||. -||++||-+|.. . +.++.+.+....+|....+.||. .|||||||||.
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvA 139 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVA 139 (231)
T ss_pred CChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHH
Confidence 5999999999995 699999999843 2 34556666667789999999995 79999999993
No 92
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.5e-21 Score=208.01 Aligned_cols=124 Identities=31% Similarity=0.496 Sum_probs=102.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+.. ...++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHH
Confidence 48899999999641 124699999999999999999999999999999999999999999999887
Q ss_pred ----eEEEEeccCc--CCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ----SIAFVPQQAW--IQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ----~Iayv~Q~pw--L~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
+|+||+|+|. ++..||+|||.|+.. .++ ++.+++++..+|++..+..| .+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHH
Confidence 4899999984 677899999998742 222 34566667777765544433 58999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
|||
T Consensus 147 qrv 149 (279)
T PRK13650 147 QRV 149 (279)
T ss_pred HHH
Confidence 999
No 93
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.5e-21 Score=199.16 Aligned_cols=120 Identities=33% Similarity=0.515 Sum_probs=103.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|.++|++..|+. .++++|||++|+.||++|+.||+||||||||+.|.|...|+.|.|.++|
T Consensus 3 i~i~~~~~~~~~---------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 3 IRINNVKKRFGA---------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA 73 (345)
T ss_pred eeehhhhhhccc---------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc
Confidence 667777777753 5789999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcCC-CccHHHHHhcCCC---------CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ----SIAFVPQQAWIQ-NATLRDNIVFGKT---------HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ----~Iayv~Q~pwL~-ngTIreNIlfg~~---------~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+||||.|+.-|| +.||.|||.||-+ -...+-++.++.|+|+.--+..| ..|||||
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQ 142 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQ 142 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHH
Confidence 599999997765 7899999999962 12356677789999987666666 4799999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 143 rQRV 146 (345)
T COG1118 143 RQRV 146 (345)
T ss_pred HHHH
Confidence 9999
No 94
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.8e-21 Score=207.71 Aligned_cols=127 Identities=29% Similarity=0.490 Sum_probs=100.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+... ....++|+||||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 3 IKIENLTHIYMEGT----PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEECCCCC----ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccH
Confidence 78999999996410 0124799999999999999999999999999999999999999999998876
Q ss_pred -----eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+|+||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|. +.+....+...|||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq 149 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQ 149 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHH
Confidence 489999998 6889999999998642 222 2234555555554 1122345567899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 150 ~qrv 153 (287)
T PRK13637 150 KRRV 153 (287)
T ss_pred HHHH
Confidence 9999
No 95
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.1e-20 Score=206.14 Aligned_cols=123 Identities=31% Similarity=0.475 Sum_probs=103.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. ..+++|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPD-------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCC-------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHH
Confidence 5899999999964 245799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ----SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+|++|+| .+++.|++|||.++.. .++ ++.+++++.++|.++++..| ..||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~ 146 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQK 146 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHH
Confidence 489999998 5778999999998632 121 34566677777776666555 38999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
|||
T Consensus 147 qrv 149 (279)
T PRK13635 147 QRV 149 (279)
T ss_pred HHH
Confidence 999
No 96
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.7e-21 Score=203.98 Aligned_cols=125 Identities=24% Similarity=0.396 Sum_probs=103.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc---ccCCeeEeCC------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD---KISGRVNTKG------ 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~---~~~G~I~i~g------ 734 (950)
.|+++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK---------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC---------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC
Confidence 3788999999963 469999999999999999999999999999999999974 6899999876
Q ss_pred -------eEEEEeccCcCCCccHHHHHhcCCCC---------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQAWIQNATLRDNIVFGKTH---------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~pwL~ngTIreNIlfg~~~---------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+|++|+|.+|+.|++|||.++... ++++.+++++.++|.+++.. ...+++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCH
Confidence 48999999999999999999876321 11234566777777554432 24557789999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 146 G~~qrv 151 (246)
T PRK14269 146 GQQQRL 151 (246)
T ss_pred HHHHHH
Confidence 999999
No 97
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.4e-21 Score=208.18 Aligned_cols=126 Identities=26% Similarity=0.436 Sum_probs=101.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+... ....++|+||||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~----~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKT----PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCC----cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996410 0124699999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+++. ..+...|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCH
Confidence 389999998 6889999999998732 122 34556666777754432 234568999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 149 Gq~qrv 154 (290)
T PRK13634 149 GQMRRV 154 (290)
T ss_pred HHHHHH
Confidence 999999
No 98
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.83 E-value=6.4e-18 Score=182.46 Aligned_cols=268 Identities=23% Similarity=0.268 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 246 LFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAP-LWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIY 324 (950)
Q Consensus 246 ~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy 324 (950)
+.++++.++..++..+.|++++.+++.+.+++.+ ....+.++.+++++.++...+...+.+...+.+.+++..++..+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999987665433 334444444444444555555555555567899999999999999
Q ss_pred HHHhcccccccCCCChhhHHHHHhhcccc-cchH-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16196 325 RKALTISNNARKETTVGEIVNLMSVDAQR-MDIT-PYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYV 402 (950)
Q Consensus 325 ~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~~-~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~~p~~~~~ 402 (950)
+|.++.+...+++.++|+++|++++|+++ .+.. ..+..+....+.+++++.+++..-...+++.+++.++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999 6643 344455555556666666665554555666666677778888889
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH-HHH
Q psy16196 403 ATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCA-PF-LVS 480 (950)
Q Consensus 403 ~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~-p~-l~~ 480 (950)
.++.++..++..++.+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+...+............... .. .+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888776666555544444333322222 11 234
Q ss_pred HHHHHhHh-hcCCCCCCChhhHHHHHHHHHHHHHHH
Q psy16196 481 LVSFAVYL-LSDDSHVLDAQIAFVSLSLFNILRFPL 515 (950)
Q Consensus 481 ~~~f~~y~-~~~~~~~L~~~~aF~~lsl~~~l~~Pl 515 (950)
++.++++. ... +.++++..+..+.+++.+..|+
T Consensus 242 ~~~~g~~~~~~~--g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVIN--GQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCT--TSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCcCHHHHHHHHHHHHHHHhhC
Confidence 45566666 443 5789999999888998888885
No 99
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.83 E-value=8e-21 Score=199.60 Aligned_cols=121 Identities=26% Similarity=0.459 Sum_probs=99.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. +.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPG--------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCC--------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 678999999953 34699999999999999999999999999999999999999999998865
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+.++..| .+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHH
Confidence 4899999999985 699999987521 11 234455666666655444433 4899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 143 ~qrl 146 (214)
T TIGR02673 143 QQRV 146 (214)
T ss_pred HHHH
Confidence 9999
No 100
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.2e-20 Score=200.90 Aligned_cols=125 Identities=30% Similarity=0.428 Sum_probs=98.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+.+. ...++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC-----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH
Confidence 489999999996410 124799999999999999999999999999999999999999999999876
Q ss_pred --------eEEEEeccCcCCCc-cHHHHHhcCC---CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 --------SIAFVPQQAWIQNA-TLRDNIVFGK---THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 --------~Iayv~Q~pwL~ng-TIreNIlfg~---~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+|++|++.++.. |++||+.++. ..+. ++.+++++.++|.+. ...+..+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCH
Confidence 38999999988865 9999998742 1121 233455555555332 3344568999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 149 G~~qrl 154 (233)
T PRK11629 149 GERQRV 154 (233)
T ss_pred HHHHHH
Confidence 999999
No 101
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.1e-20 Score=211.28 Aligned_cols=121 Identities=25% Similarity=0.401 Sum_probs=99.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|.. .++|+|+||+|++||+++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS---------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC---------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 5899999999953 4689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCC---CC-hh---HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKT---HV-PR---RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~---~d-~~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|++.+|. .|++|||.|+.. .+ ++ +.+++++..+|.+..+. ....|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 5999999999995 699999999743 12 22 23334444455433333 3458999999999
No 102
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.83 E-value=1.8e-20 Score=198.16 Aligned_cols=123 Identities=27% Similarity=0.409 Sum_probs=100.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|.. .++++|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~i~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLAGD---------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEeeCC---------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH
Confidence 35899999999953 4699999999999999999999999999999999999999999999886
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCCC-----ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKTH-----VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~~-----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++++++.|++||+.++..+ ++++.+++++.+++.+ +.......+|||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv 146 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRI 146 (225)
T ss_pred HHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHH
Confidence 48999999999999999999874221 1223334444444421 234566789999999999
No 103
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1e-20 Score=204.00 Aligned_cols=126 Identities=22% Similarity=0.404 Sum_probs=101.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
+.++++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|.++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD---------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC---------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 46999999999953 469999999999999999999999999999999999864 5899998865
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCC---C-C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKT---H-V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~---~-d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|++.+++.|++|||.++.. . + +++.++.++.+++.+++. +.......
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 3899999999999999999987631 1 1 223344455555543332 23456778
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 149 ~LSgGq~qrv 158 (253)
T PRK14242 149 GLSGGQQQRL 158 (253)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 104
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.83 E-value=2.1e-20 Score=201.03 Aligned_cols=122 Identities=27% Similarity=0.384 Sum_probs=101.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE---------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC---------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhC
Confidence 46999999999963 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeccCcCCC-ccHHHHHhcCCCC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIAFVPQQAWIQN-ATLRDNIVFGKTH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Iayv~Q~pwL~n-gTIreNIlfg~~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.++. .|++||+.++... .+++.+++++..+|.+.. ..+..+||||||||+
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl 142 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRV 142 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHH
Confidence 4999999998887 7999999986421 133445566666654432 344578999999999
No 105
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.3e-20 Score=206.50 Aligned_cols=126 Identities=25% Similarity=0.454 Sum_probs=101.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+++|++|+|+... ...+++|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~----~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNS----PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCC----cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 68999999996410 0113699999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccC--cCCCccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQA--WIQNATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+||+|+| .+++.|+.|||.|+.. .+ +++++++++..+|.+++. .....+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCH
Confidence 379999998 8999999999998742 11 234556666666643321 244578999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 148 Gqkqrv 153 (288)
T PRK13643 148 GQMRRV 153 (288)
T ss_pred HHHHHH
Confidence 999999
No 106
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.83 E-value=9e-21 Score=199.21 Aligned_cols=121 Identities=30% Similarity=0.454 Sum_probs=97.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. ..++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPN--------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCC--------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH
Confidence 357899999964 35699999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+|++|+|.++. .|++|||.++.. .+. ++.++.++.+++++..+.. ..+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHH
Confidence 3899999999887 599999987632 111 2334555555664443333 34899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 142 ~qrv 145 (214)
T cd03292 142 QQRV 145 (214)
T ss_pred HHHH
Confidence 9999
No 107
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.83 E-value=1.1e-20 Score=210.13 Aligned_cols=124 Identities=27% Similarity=0.393 Sum_probs=98.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+++|+++.|+.+. ...++|+||||+|++|+.++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~-----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT-----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC-----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 68999999996310 124799999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+|+|++|++.++. .|++|||.|+.. .+. ++-.++++..+|.+..+. ....|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHH
Confidence 4999999999985 799999998632 222 223344555555443333 346899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 146 kQRV 149 (343)
T TIGR02314 146 KQRV 149 (343)
T ss_pred HHHH
Confidence 9999
No 108
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.83 E-value=1.6e-20 Score=211.43 Aligned_cols=122 Identities=23% Similarity=0.377 Sum_probs=103.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|.. .++|+|+||++++|++++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 13 ~~L~l~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG---------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC---------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 45899999999963 4689999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcCC-CccHHHHHhcCCCC---Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWIQ-NATLRDNIVFGKTH---VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL~-ngTIreNIlfg~~~---d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
.|+||+|++-+| +.||+|||.|+... +. ++.+++++..+|.+..+..| .+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHH
Confidence 499999999998 55999999997432 21 23455666667766666665 4899999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
|
T Consensus 153 V 153 (375)
T PRK09452 153 V 153 (375)
T ss_pred H
Confidence 9
No 109
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=212.36 Aligned_cols=121 Identities=30% Similarity=0.439 Sum_probs=101.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.+ .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~i~~l~~~~~~---------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD---------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC---------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh
Confidence 3789999999963 4689999999999999999999999999999999999999999999976
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|++.+|. .|++|||.|+.. .+ .++.+++++.++|.+..+..| .+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHH
Confidence 4999999999985 599999998743 12 134556666667755554444 58999999999
No 110
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=203.02 Aligned_cols=128 Identities=22% Similarity=0.378 Sum_probs=104.7
Q ss_pred CCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC-
Q psy16196 661 FTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG- 734 (950)
Q Consensus 661 ~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g- 734 (950)
....++++|++++|+. .++|+|+||++++||.++|+||+|||||||+++|.|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred CCeEEEEeeEEEEECC---------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 3457999999999953 579999999999999999999999999999999999996 5799998875
Q ss_pred --------------eEEEEeccCcCCCccHHHHHhcCCCC----C----hhHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 --------------SIAFVPQQAWIQNATLRDNIVFGKTH----V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 --------------~Iayv~Q~pwL~ngTIreNIlfg~~~----d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.|+||+|++.++..|++|||.++... + +++.+++++.++|.++++ +..+..
T Consensus 88 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~ 160 (267)
T PRK14237 88 DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKS 160 (267)
T ss_pred EcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCC
Confidence 38999999999999999999886321 1 123445566666655442 345677
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
...||||||||+
T Consensus 161 ~~~LS~G~~qrl 172 (267)
T PRK14237 161 ALTLSGGQQQRL 172 (267)
T ss_pred cccCCHHHHHHH
Confidence 889999999999
No 111
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.5e-20 Score=205.85 Aligned_cols=126 Identities=22% Similarity=0.435 Sum_probs=98.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+... ....++|+||||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 3 IRFDNVSYTYQKGT----PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEECCCC----ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996410 0124699999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccC--cCCCccHHHHHhcCCC---CChhH----HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQA--WIQNATLRDNIVFGKT---HVPRR----YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+||+|+| .+|+.|++|||.|+.. .+.+. .++.++.++|..+ .......+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSg 148 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSG 148 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCH
Confidence 379999998 6888999999998732 23222 2233334444211 22356778999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 149 Gq~qrv 154 (286)
T PRK13646 149 GQMRKI 154 (286)
T ss_pred HHHHHH
Confidence 999999
No 112
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.83 E-value=1.2e-20 Score=198.16 Aligned_cols=120 Identities=31% Similarity=0.469 Sum_probs=96.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN---------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC---------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccc
Confidence 468899999963 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccCcCCC-ccHHHHHhcCCC---CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQN-ATLRDNIVFGKT---HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.++. .|++|||.++.. .+++ +.+++++..++++.+ .....+||||||||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~ 139 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRV 139 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHH
Confidence 4999999999985 699999987632 2222 223344444443333 334468999999999
No 113
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.83 E-value=1.4e-20 Score=198.72 Aligned_cols=122 Identities=26% Similarity=0.468 Sum_probs=98.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. ...++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~-------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKK-------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCC-------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHH
Confidence 468899999964 125799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeccCcCC-CccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQ-NATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~-ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++|++|++-++ +.|++||+.++.. .+ +++.+++++.++|.+.. .....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHH
Confidence 389999999888 6899999987421 11 13445566666664322 223458999999999
No 114
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2e-20 Score=199.98 Aligned_cols=120 Identities=27% Similarity=0.398 Sum_probs=96.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD---------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC---------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccc
Confidence 789999999963 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccCcCCC-ccHHHHHhcCCCC-------Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 -SIAFVPQQAWIQN-ATLRDNIVFGKTH-------VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 -~Iayv~Q~pwL~n-gTIreNIlfg~~~-------d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+|++|+|.++. .|++|||.++... +. ++.++.++.++|.+. ...+..+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHH
Confidence 4899999999885 6999999986421 11 122334444444322 2334568999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
||+
T Consensus 143 qrl 145 (239)
T cd03296 143 QRV 145 (239)
T ss_pred HHH
Confidence 999
No 115
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.83 E-value=7.6e-21 Score=212.52 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=90.9
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------------eEEEEeccCcCCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------------SIAFVPQQAWIQN 747 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------------~Iayv~Q~pwL~n 747 (950)
+.++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 45689999999999999999999999999999999999999999999977 4999999999997
Q ss_pred -ccHHHHHhcCCCC---C-hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 748 -ATLRDNIVFGKTH---V-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 748 -gTIreNIlfg~~~---d-~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.||+|||.|+.++ + +++++++.++|.+- |.+........+|||||||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v--------gL~~~~~~~p~~LSGGq~QRV 138 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV--------GLEEYEHRYPDELSGGMQQRV 138 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------CCchhhhCChhhCCHHHHHHH
Confidence 5999999987542 2 23455555555421 111224455668999999999
No 116
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2e-20 Score=204.47 Aligned_cols=123 Identities=27% Similarity=0.451 Sum_probs=101.5
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC---CeeEeCC------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS---GRVNTKG------ 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~---G~I~i~g------ 734 (950)
.++++|+++.|+. ...++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++ |+|.++|
T Consensus 5 ~l~i~~l~~~~~~-------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYPD-------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcCC-------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence 5899999999964 23469999999999999999999999999999999999999988 8999876
Q ss_pred -------eEEEEeccCc--CCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQAW--IQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~pw--L~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
+|+||+|+|+ +++.|++|||.|+.. .+. ++.+++++.++|.+..+..| .+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~ 146 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSG 146 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCH
Confidence 4899999984 678999999998632 222 23455666677765555444 59999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 147 G~~qrv 152 (282)
T PRK13640 147 GQKQRV 152 (282)
T ss_pred HHHHHH
Confidence 999999
No 117
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.83 E-value=1.5e-20 Score=210.51 Aligned_cols=121 Identities=29% Similarity=0.429 Sum_probs=101.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+. ..+|+|+||++++|++++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA---------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC---------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 4899999999963 4689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCC-CccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQ-NATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~-ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|++-+| +.|++|||.|+.. .+ .++.+++++..+|++..+ .+..+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHH
Confidence 499999999999 5799999999743 22 234455556656654444 34468999999999
No 118
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.8e-20 Score=203.86 Aligned_cols=124 Identities=31% Similarity=0.534 Sum_probs=100.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|+. .+.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~-------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPN-------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCC-------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCH
Confidence 36899999999963 245799999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccC--cCCCccHHHHHhcCCC---CChhH----HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQA--WIQNATLRDNIVFGKT---HVPRR----YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+||+|+| .+++.|++|||.++.. ++.+. .+++++..+|.+.++. +..+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHH
Confidence 489999998 4667899999998632 23222 3445555556544433 446999999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 148 ~qrl 151 (271)
T PRK13632 148 KQRV 151 (271)
T ss_pred HHHH
Confidence 9999
No 119
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.83 E-value=1.7e-20 Score=201.09 Aligned_cols=121 Identities=30% Similarity=0.462 Sum_probs=96.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|.. +.++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPN--------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCC--------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHH
Confidence 578999999962 34699999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCCC------------C---hhHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKTH------------V---PRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~~------------d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.++|++|++.++. .|++||+.++... . .++.+++++.+++.+. ...+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCC
Confidence 2899999998886 6999999876321 1 1223344444444332 3345
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
..+|||||||||
T Consensus 143 ~~~LSgG~~qrv 154 (243)
T TIGR02315 143 ADQLSGGQQQRV 154 (243)
T ss_pred cccCCHHHHHHH
Confidence 678999999999
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=1.5e-20 Score=197.12 Aligned_cols=120 Identities=31% Similarity=0.524 Sum_probs=95.4
Q ss_pred EEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------------
Q psy16196 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734 (950)
Q Consensus 667 ~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------------ 734 (950)
++|+++.|+. ...++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 ~~~l~~~~~~-------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPD-------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEecCC-------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHH
Confidence 5788998864 125799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++ .+++.|++||+.++.. .+. ++.++.++..+|.+.++ .+...|||||||||
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 143 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRV 143 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHH
Confidence 489999998 4678999999987532 221 22334555555543333 34468999999999
No 121
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=199.14 Aligned_cols=122 Identities=27% Similarity=0.429 Sum_probs=101.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG---------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC---------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChH
Confidence 3789999999853 4699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCCccHHHHHhcCCCC---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNATLRDNIVFGKTH---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ngTIreNIlfg~~~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.++..|++||+.++..+ +.++.+++++.+++.+++ ......+||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl 140 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRV 140 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHH
Confidence 38999999999999999999986432 223445666666664322 1235668999999999
No 122
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.83 E-value=2.1e-20 Score=195.54 Aligned_cols=120 Identities=26% Similarity=0.380 Sum_probs=99.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK---------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC---------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHH
Confidence 468899999953 4799999999999999999999999999999999999999999999986
Q ss_pred -eEEEEeccCcCC-CccHHHHHhcCCC---CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQ-NATLRDNIVFGKT---HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~-ngTIreNIlfg~~---~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|++.++ +.|++|||.++.. .++++.+++++..++.+.++ .+...|||||||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 135 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRL 135 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHH
Confidence 489999999877 6899999987532 23445566666666654332 34568999999999
No 123
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=201.35 Aligned_cols=127 Identities=26% Similarity=0.438 Sum_probs=102.7
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC--
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG-- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g-- 734 (950)
.+.++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~ 81 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN 81 (260)
T ss_pred CceEEEEEEEEEeCC---------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE
Confidence 457999999999963 369999999999999999999999999999999999986 4799998865
Q ss_pred -------------eEEEEeccCcCCCccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 -------------SIAFVPQQAWIQNATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 -------------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
+|+|++|++.++..|++||+.++.. .+. ++.+++++..++.+++ .....++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 154 (260)
T PRK10744 82 ILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSG 154 (260)
T ss_pred ccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCC
Confidence 4899999999999999999987632 222 2334455555554333 23456778
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
.+|||||||||
T Consensus 155 ~~LS~Gq~qrv 165 (260)
T PRK10744 155 YSLSGGQQQRL 165 (260)
T ss_pred CCCCHHHHHHH
Confidence 89999999999
No 124
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.6e-20 Score=200.99 Aligned_cols=126 Identities=27% Similarity=0.388 Sum_probs=99.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g--- 734 (950)
..++++|+++.|++ .++|+|+||+|++||.++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD---------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC---------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec
Confidence 46899999999963 4699999999999999999999999999999999999987 489998865
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|++.+++.|++|||.++... +. ++.+++++.+++.+.+ ++. ...+..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDK----LNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHH----HhCCcc
Confidence 38999999999999999999986421 11 1223344444443222 222 334678
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 150 ~LSgG~~qrv 159 (254)
T PRK14273 150 SLSGGQQQRL 159 (254)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 125
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=2.6e-20 Score=200.14 Aligned_cols=124 Identities=27% Similarity=0.441 Sum_probs=99.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-----CCeeEeCC-----
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-----SGRVNTKG----- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-----~G~I~i~g----- 734 (950)
++++|++++|+. .++++|+||+|++||+++|+|++|||||||+++|.|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~ 72 (247)
T TIGR00972 2 IEIENLNLFYGE---------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72 (247)
T ss_pred EEEEEEEEEECC---------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc
Confidence 678999999964 36999999999999999999999999999999999999998 99998865
Q ss_pred ----------eEEEEeccCcCCCccHHHHHhcCCCC----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ----------SIAFVPQQAWIQNATLRDNIVFGKTH----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+|++|++++++.|++||+.++... +. ++.+++++..+|.++++ ........+|
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 145 (247)
T TIGR00972 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGL 145 (247)
T ss_pred cccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccC
Confidence 38999999999999999999875321 11 23344455555553331 2245566799
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|||||||+
T Consensus 146 SgG~~qrv 153 (247)
T TIGR00972 146 SGGQQQRL 153 (247)
T ss_pred CHHHHHHH
Confidence 99999999
No 126
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.82 E-value=1.9e-20 Score=199.80 Aligned_cols=120 Identities=23% Similarity=0.341 Sum_probs=95.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG---------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC---------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHH
Confidence 357899999953 4699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCCCC-------------h----hHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKTHV-------------P----RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~~d-------------~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.|+|++|++.++.+ |++|||.++.... . ++.+++++.+++ +.....+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 140 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRP 140 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCC
Confidence 38999999998876 9999998864211 1 122233333333 2334556
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
...||||||||+
T Consensus 141 ~~~LSgG~~qrv 152 (236)
T cd03219 141 AGELSYGQQRRL 152 (236)
T ss_pred hhhCCHHHHHHH
Confidence 678999999999
No 127
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.82 E-value=2.7e-20 Score=196.64 Aligned_cols=124 Identities=28% Similarity=0.415 Sum_probs=96.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|++.. ...++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~-----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK-----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC-----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhH
Confidence 67899999996410 124699999999999999999999999999999999999999999999875
Q ss_pred -------eEEEEeccCcCCC-ccHHHHHhcCC---CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -------SIAFVPQQAWIQN-ATLRDNIVFGK---THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -------~Iayv~Q~pwL~n-gTIreNIlfg~---~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.|+|++|++.++. .|++||+.++. .++. ++.+++++.+++++.+ ......||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHH
Confidence 3899999998885 69999998742 1221 2233444554443333 3344689999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 146 ~~qrv 150 (221)
T TIGR02211 146 ERQRV 150 (221)
T ss_pred HHHHH
Confidence 99999
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.9e-20 Score=202.31 Aligned_cols=121 Identities=29% Similarity=0.499 Sum_probs=97.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. +.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPD--------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCC--------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHH
Confidence 678999999963 34699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeccCc--CCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ----SIAFVPQQAW--IQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ----~Iayv~Q~pw--L~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+||+|+|. +++.|++|||.++.. .+. ++.+++++.++|++.. ......||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHH
Confidence 3899999986 678899999998642 122 2334445555554333 334568999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
||+
T Consensus 143 qrv 145 (274)
T PRK13644 143 QCV 145 (274)
T ss_pred HHH
Confidence 999
No 129
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.82 E-value=2.7e-20 Score=189.55 Aligned_cols=95 Identities=32% Similarity=0.679 Sum_probs=87.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .+.++++|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~~~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPE-------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCC-------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHH
Confidence 468899999964 234799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|+|++++.|++||| ..+||||||||+
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv 107 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRL 107 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHH
Confidence 38999999999999999998 568999999999
No 130
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.82 E-value=2.4e-20 Score=209.19 Aligned_cols=122 Identities=25% Similarity=0.461 Sum_probs=103.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC--CeeEeCC------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS--GRVNTKG------ 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~--G~I~i~g------ 734 (950)
+.++++|++++|.. ..+|+|+||+|++|++++|+||+||||||||++|.|+.+|++ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC---------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC
Confidence 35899999999963 469999999999999999999999999999999999999999 9999987
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+||+|++.+|. .|++|||.|+.. .+ +++.+++++..+|++..+..| .+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHH
Confidence 4999999999985 599999998642 12 234566677777766666555 48999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
|||
T Consensus 144 QRv 146 (362)
T TIGR03258 144 QRI 146 (362)
T ss_pred HHH
Confidence 999
No 131
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.82 E-value=1.7e-20 Score=197.79 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=97.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+... ...++|+|+||++++|+.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~-----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK-----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC-----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHH
Confidence 67899999996410 012699999999999999999999999999999999999999999999976
Q ss_pred --eEEEEeccCcCCCc-cHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQNA-TLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~ng-TIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|+|.++.. |++|||.+... .+. ++.+++++..++. .....+..+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHH
Confidence 49999999999885 99999976422 111 2233444444443 334456778999999999
No 132
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.82 E-value=3.4e-20 Score=207.77 Aligned_cols=120 Identities=31% Similarity=0.484 Sum_probs=98.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|.. .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 L~i~~l~~~~~~---------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 3 IEIANIKKSFGR---------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEeCC---------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 789999999953 4699999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCC-ccHHHHHhcCCCC-------Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 -SIAFVPQQAWIQN-ATLRDNIVFGKTH-------VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 -~Iayv~Q~pwL~n-gTIreNIlfg~~~-------d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+||+|++.+|. .|++|||.|+... +. ++-+++++..+|.+..+. +...||||||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~ 142 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQK 142 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHH
Confidence 4999999999986 6999999997431 21 233444555555443333 3458999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
|||
T Consensus 143 QRv 145 (353)
T PRK10851 143 QRV 145 (353)
T ss_pred HHH
Confidence 999
No 133
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.82 E-value=3.5e-20 Score=196.72 Aligned_cols=124 Identities=26% Similarity=0.402 Sum_probs=99.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCC-CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 664 PLVIENGTFTWERNTEGEGAES-PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~-~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
.++++|++++|+.. .. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQG------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccCC------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCH
Confidence 58999999999641 11 3599999999999999999999999999999999999999999998875
Q ss_pred ---------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 ---------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 ---------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|+|++|+|.++. .|++|||.++.. .+ +++.+++++.+++.+.++..| ..||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS 148 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLS 148 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCC
Confidence 3899999998887 499999986421 11 234455666666655444433 4799
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
||||||+
T Consensus 149 ~Ge~qrl 155 (228)
T PRK10584 149 GGEQQRV 155 (228)
T ss_pred HHHHHHH
Confidence 9999999
No 134
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.3e-20 Score=195.42 Aligned_cols=120 Identities=26% Similarity=0.416 Sum_probs=95.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------e
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------S 735 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------~ 735 (950)
++++|+++.|++ .++++|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR---------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC---------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHcc
Confidence 367899999853 4699999999999999999999999999999999999999999999987 4
Q ss_pred EEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 736 IAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 736 Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++|++|++-++. .|++||+.++.. .. +++.++.++..++.+ ....+..+||||||||+
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl 137 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKV 137 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHH
Confidence 999999998886 499999987532 11 122333444444432 23345678999999999
No 135
>PRK10908 cell division protein FtsE; Provisional
Probab=99.82 E-value=3.2e-20 Score=196.15 Aligned_cols=121 Identities=26% Similarity=0.433 Sum_probs=96.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. +.++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLG--------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecC--------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhH
Confidence 678999999943 34699999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEeccCcC-CCccHHHHHhcCCC---CCh-h---HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWI-QNATLRDNIVFGKT---HVP-R---RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL-~ngTIreNIlfg~~---~d~-~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.++|++|+|.+ ++.|++|||.++.. .++ + +.++.++..++.++++ ....+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 142 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGE 142 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHH
Confidence 38999999986 57899999988531 222 2 2233444444443333 3346899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 143 ~qrv 146 (222)
T PRK10908 143 QQRV 146 (222)
T ss_pred HHHH
Confidence 9999
No 136
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.82 E-value=5e-20 Score=191.35 Aligned_cols=120 Identities=21% Similarity=0.360 Sum_probs=100.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|+.++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 1 l~i~~l~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG---------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC---------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHh
Confidence 367899999853 4689999999999999999999999999999999999999999999875
Q ss_pred --eEEEEeccCcCC-CccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQ-NATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~-ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++|++|++.++ +.|++|||.+..+ .++++.+++++..++.++.+ ....+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl 134 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRV 134 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHH
Confidence 589999998775 6899999988654 34566777777777754332 23467999999999
No 137
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.82 E-value=3.4e-20 Score=196.03 Aligned_cols=121 Identities=28% Similarity=0.481 Sum_probs=95.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK---------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC---------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHH
Confidence 468899999853 4699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCCCC--hh---HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKTHV--PR---RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~~d--~~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++.++.. |++||+.++.... .+ +.+++++.+. .+ +.....+...||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hh----hhhhhCchhhCCHHHHHHH
Confidence 38999999998886 9999999875421 11 1222333221 11 1223456678999999999
No 138
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.9e-20 Score=208.29 Aligned_cols=124 Identities=26% Similarity=0.405 Sum_probs=98.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+.+. .+.++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~-----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG-----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC-----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHH
Confidence 67899999996210 135799999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+|+|++|++.++. .|++|||.++.. .+. ++.++.++..+|.+..+ ....+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHH
Confidence 4999999999886 799999988632 222 22334445545543332 3446899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 146 ~qRv 149 (343)
T PRK11153 146 KQRV 149 (343)
T ss_pred HHHH
Confidence 9999
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5e-20 Score=193.06 Aligned_cols=118 Identities=27% Similarity=0.446 Sum_probs=96.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+++|++++|++ .. .|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGE---------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCC---------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhH
Confidence 468899999863 12 399999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCCc-cHHHHHhcCCCC-------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQNA-TLRDNIVFGKTH-------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~ng-TIreNIlfg~~~-------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.++.+ |++||+.++... ++++.+++++.++|.+..+..| .+||||||||+
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 137 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRV 137 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHH
Confidence 38999999999875 999999876421 1234556666666665555544 47999999999
No 140
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.8e-20 Score=195.01 Aligned_cols=119 Identities=26% Similarity=0.404 Sum_probs=95.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++| .++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~~~~~~~~---------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK---------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC---------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHH
Confidence 468899999953 46999999999999 9999999999999999999999999999999886
Q ss_pred --eEEEEeccCcCCCc-cHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQNA-TLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~ng-TIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|+|.+|.. |++|||.+... .+ +++.+++++.+++.+..+ ....+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHH
Confidence 48999999999875 99999987421 11 123345555555543322 23357999999999
No 141
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.9e-20 Score=198.43 Aligned_cols=125 Identities=31% Similarity=0.453 Sum_probs=99.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-----CCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-----SGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-----~G~I~i~g---- 734 (950)
.++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||++.|.|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK---------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC---------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence 5889999999963 46999999999999999999999999999999999999987 69998764
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++||+|+|.+++.|++|||.++..+ .++ +.+++++..++.+.+ ++....++.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCccc
Confidence 49999999999999999999986422 111 222233333333222 2345678889
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 148 LS~Gq~qrv 156 (251)
T PRK14249 148 LSGGQQQRL 156 (251)
T ss_pred CCHHHHHHH
Confidence 999999999
No 142
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.5e-20 Score=196.59 Aligned_cols=120 Identities=24% Similarity=0.385 Sum_probs=96.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 i~~~~~~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD---------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC---------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHH
Confidence 468899999953 4699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|++.++. .|++|||.++.. .+ +++.++.++.++|.+..+.. ..+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHH
Confidence 4899999998876 499999987421 11 22345556666665433322 358999999999
No 143
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.5e-20 Score=200.30 Aligned_cols=127 Identities=21% Similarity=0.387 Sum_probs=102.4
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC--
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG-- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g-- 734 (950)
...++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~~---------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 17 EIKMRARDVSVFYGE---------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred CceEEEEeEEEEECC---------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE
Confidence 357999999999963 4699999999999999999999999999999999999975 899998876
Q ss_pred -------------eEEEEeccCcCCCccHHHHHhcCCC---C--C----hhHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 -------------SIAFVPQQAWIQNATLRDNIVFGKT---H--V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 -------------~Iayv~Q~pwL~ngTIreNIlfg~~---~--d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.|+|++|+|.+++.|++|||.++.. . . .++.+++++.+++.+++. +.....
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~ 160 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEP 160 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCC
Confidence 3899999999999999999987531 1 1 123345555556644332 234566
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
+.+||||||||+
T Consensus 161 ~~~LSgGq~qrv 172 (267)
T PRK14235 161 GTGLSGGQQQRL 172 (267)
T ss_pred cccCCHHHHHHH
Confidence 789999999999
No 144
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5e-20 Score=202.81 Aligned_cols=126 Identities=25% Similarity=0.430 Sum_probs=98.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+++|+++.|+... ....++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~----~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 3 IKVKNIVKIFNKKL----PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEECCCC----CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccc
Confidence 78999999996410 0123699999999999999999999999999999999999999999998853
Q ss_pred ---------------------------eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchh
Q psy16196 735 ---------------------------SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDF 778 (950)
Q Consensus 735 ---------------------------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di 778 (950)
.|+||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 379999986 6888999999998742 222 2334555555554221
Q ss_pred hhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 779 EMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 779 ~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
...+..+|||||||||
T Consensus 159 ----------~~~~~~~LSgGqkqrv 174 (305)
T PRK13651 159 ----------LQRSPFELSGGQKRRV 174 (305)
T ss_pred ----------hhCChhhCCHHHHHHH
Confidence 2245568999999999
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.81 E-value=3.3e-20 Score=194.77 Aligned_cols=120 Identities=28% Similarity=0.376 Sum_probs=96.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD---------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC---------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhH
Confidence 367899999963 4699999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCC----CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGK----THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~----~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+|++|++.++. .|++||+.++. ..+. ++.+++++.+++.+.+ .....+|||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~ 140 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQ 140 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHH
Confidence 3899999999886 69999998753 1222 2334444444443333 33446899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 141 ~qrv 144 (213)
T cd03262 141 QQRV 144 (213)
T ss_pred HHHH
Confidence 9999
No 146
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.9e-20 Score=197.02 Aligned_cols=124 Identities=26% Similarity=0.386 Sum_probs=96.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+... ...++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG-----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC-----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 67899999996410 013799999999999999999999999999999999999999999998875
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+|++|++.++. .|++|||.++.. .+. ++.++.++..+|.+.+ .....+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHH
Confidence 3899999999986 699999987532 221 1223344444443333 33446899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 146 ~qrv 149 (233)
T cd03258 146 KQRV 149 (233)
T ss_pred HHHH
Confidence 9999
No 147
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.9e-20 Score=198.14 Aligned_cols=121 Identities=29% Similarity=0.467 Sum_probs=95.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. +.++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPN--------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCC--------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhH
Confidence 357899999853 25799999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC------------CChh---HHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT------------HVPR---RYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~------------~d~~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.++|++|++.++. .|++||+.++.. ..++ +.+++++.+++. .....+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCC
Confidence 3899999998876 799999987532 1111 222233333332 223456
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
+.+|||||||||
T Consensus 142 ~~~LS~G~~qrv 153 (241)
T cd03256 142 ADQLSGGQQQRV 153 (241)
T ss_pred cccCCHHHHHHH
Confidence 779999999999
No 148
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.8e-20 Score=199.02 Aligned_cols=126 Identities=27% Similarity=0.419 Sum_probs=101.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
..++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~~---------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 12 IIISLQNVTISYGT---------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred ceEEEEeEEEEECC---------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 46999999999963 469999999999999999999999999999999999987 5899998875
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC---Ch---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH---VP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~---d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+|++|++.++..|++||+.++... +. ++.+++++.+++...+ ++....+..+|
T Consensus 83 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~L 155 (269)
T PRK14259 83 YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSL 155 (269)
T ss_pred ccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccC
Confidence 38999999999989999999986432 11 2233444554443222 23445667899
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|||||||+
T Consensus 156 S~G~~qrl 163 (269)
T PRK14259 156 SGGQQQRL 163 (269)
T ss_pred CHHHHHHH
Confidence 99999999
No 149
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-20 Score=203.22 Aligned_cols=108 Identities=30% Similarity=0.452 Sum_probs=90.0
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------------eEEEEeccCcCC-C
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------------SIAFVPQQAWIQ-N 747 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------------~Iayv~Q~pwL~-n 747 (950)
.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| +|+|++|++.++ +
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 5689999999999999999999999999999999999999999998865 489999999998 5
Q ss_pred ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 748 ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 748 gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|++|||.++.. ++ +++.+++++.++|.+.++..| .+||||||||+
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv 169 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRV 169 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHH
Confidence 799999987531 11 234556667777765555554 37999999999
No 150
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.8e-20 Score=200.95 Aligned_cols=122 Identities=29% Similarity=0.447 Sum_probs=100.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. +.++|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSD--------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcch
Confidence 5899999999963 35699999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccC--cCCCccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ------SIAFVPQQA--WIQNATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.|+|++|+| .+++.|++|||.++.. +. .++.+++++.++|.+. ...+..+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHH
Confidence 389999998 6789999999987532 11 1234455555555432 23567899999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
||||+
T Consensus 146 ~~qrl 150 (283)
T PRK13636 146 QKKRV 150 (283)
T ss_pred HHHHH
Confidence 99999
No 151
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.81 E-value=4.6e-20 Score=186.82 Aligned_cols=83 Identities=33% Similarity=0.647 Sum_probs=76.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. ...++++|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~-------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPG-------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCC-------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHH
Confidence 468899999964 235699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeccCcCCCccHHHHH
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNI 754 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNI 754 (950)
.++|++|+|++++.|++||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~~l 96 (173)
T cd03246 74 LGDHVGYLPQDDELFSGSIAENI 96 (173)
T ss_pred HHhheEEECCCCccccCcHHHHC
Confidence 48999999999999999998
No 152
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=8.9e-20 Score=189.38 Aligned_cols=120 Identities=26% Similarity=0.369 Sum_probs=96.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
+.++|++++|++ .++|+|+||++++|+.++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYHD---------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeCC---------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHH
Confidence 678999999963 4699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeccCcCC-CccHHHHHhcCCCC--ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQ-NATLRDNIVFGKTH--VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~-ngTIreNIlfg~~~--d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++|++|++.++ +.|++||+.++... ++.+.+++++..++.+.. + ....+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~~rv 136 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------D----YPCGLLSSGQKRQV 136 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------h----CChhhcCHHHHHHH
Confidence 589999999885 68999999986321 223344455544443221 1 22346999999999
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7e-20 Score=198.15 Aligned_cols=126 Identities=26% Similarity=0.439 Sum_probs=99.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc--c---cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--K---ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~--~---~~G~I~i~g--- 734 (950)
..++++|+++.|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 11 EVYQINGMNLWYGQ---------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred ceEEEeeEEEEECC---------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 46899999999963 469999999999999999999999999999999999987 3 589998765
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|++.+++.|++||+.++... +++ +.+++++..++.+++. +....++.
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~ 154 (259)
T PRK14274 82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQAL 154 (259)
T ss_pred cccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcc
Confidence 38999999999999999999886421 111 1233344444443322 23456778
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+||||||||+
T Consensus 155 ~LS~Gq~qrv 164 (259)
T PRK14274 155 SLSGGQQQRL 164 (259)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 154
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.8e-20 Score=207.23 Aligned_cols=122 Identities=28% Similarity=0.430 Sum_probs=101.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|.. .++|+|+||+|++|++++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 18 ~~l~l~~v~~~~~~---------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 18 PLLEIRNLTKSFDG---------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred ceEEEEeEEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 35999999999953 4689999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
.|+||+|++-+|. .|++|||.|+.. .+. ++.+++++..+|.+..+..| .+||||||||
T Consensus 89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QR 157 (377)
T PRK11607 89 YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQR 157 (377)
T ss_pred HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHH
Confidence 4899999999995 599999998742 222 23455566666655444444 4799999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
|
T Consensus 158 V 158 (377)
T PRK11607 158 V 158 (377)
T ss_pred H
Confidence 9
No 155
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.81 E-value=6.7e-20 Score=192.32 Aligned_cols=117 Identities=27% Similarity=0.498 Sum_probs=96.2
Q ss_pred EEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------
Q psy16196 666 VIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------- 734 (950)
Q Consensus 666 ~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----------- 734 (950)
+++|+++.|+. .++|+||++++|+.++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~-----------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH-----------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEeCC-----------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhcc
Confidence 57899999853 36799999999999999999999999999999999999999999876
Q ss_pred eEEEEeccCcCCC-ccHHHHHhcCC-C-C-----ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIAFVPQQAWIQN-ATLRDNIVFGK-T-H-----VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Iayv~Q~pwL~n-gTIreNIlfg~-~-~-----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|+|.++. .|++||+.++. + . ++++.+++++.+++.+.....|. +||||||||+
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl 137 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRV 137 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHH
Confidence 3899999999987 59999998642 1 1 12345566677777655555553 7999999999
No 156
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.3e-20 Score=202.13 Aligned_cols=126 Identities=25% Similarity=0.430 Sum_probs=102.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
..+.++|+++.|.. .++|+|+||+|++|++++|+||+|||||||+++|.|.++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYYGD---------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEeCC---------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 46899999999963 469999999999999999999999999999999999986 6899998875
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC---------------C-----hhHHHHHHHHhcCCchhhhCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH---------------V-----PRRYNKVIDACALTPDFEMLP 782 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~---------------d-----~~~y~~Vi~ac~L~~Di~~Lp 782 (950)
.|+||+|++.+++.||+|||.++... + .++.+++++.+++.+
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 188 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD------ 188 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch------
Confidence 48999999999999999999986321 0 122344455554433
Q ss_pred CCCcccccCCCCCCCHHHhhcc
Q psy16196 783 AGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 783 ~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+.++....+..+|||||||||
T Consensus 189 -~~~~~~~~~~~~LSgGq~qrv 209 (305)
T PRK14264 189 -EVNDRLDDNALGLSGGQQQRL 209 (305)
T ss_pred -hhhHHhcCccccCCHHHHHHH
Confidence 334556778899999999999
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.7e-20 Score=198.36 Aligned_cols=122 Identities=24% Similarity=0.398 Sum_probs=98.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|+. .++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 10 ~~l~i~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRVPG---------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEECC---------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH
Confidence 46899999999953 4699999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCC--------C---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKT--------H---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~--------~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|+|++|++-++. .|++||+.++.. . ++++.+++++.+++.+.++..| .+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS 149 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLS 149 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCC
Confidence 3899999976654 599999997631 1 1223455566666654444433 4799
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
|||||||
T Consensus 150 gG~~qrv 156 (265)
T PRK10575 150 GGERQRA 156 (265)
T ss_pred HHHHHHH
Confidence 9999999
No 158
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.3e-20 Score=197.73 Aligned_cols=123 Identities=25% Similarity=0.419 Sum_probs=97.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|++ ..++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGG--------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCC--------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHH
Confidence 357899999964 25699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
.++|++|+|.++. .|++|||.++.. .+. ++.+++++..++.+ +......+.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 4899999999885 799999987632 121 12233344444432 012345668899999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
|
T Consensus 144 v 144 (242)
T cd03295 144 V 144 (242)
T ss_pred H
Confidence 9
No 159
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.1e-20 Score=198.23 Aligned_cols=124 Identities=25% Similarity=0.448 Sum_probs=100.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC-----
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG----- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g----- 734 (950)
++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|..+ +++|+|.++|
T Consensus 4 l~~~~v~~~~~~---------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 4 IEVENLNTYFDD---------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEeEEEEeCC---------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 789999999953 469999999999999999999999999999999999864 3899998766
Q ss_pred ----------eEEEEeccCcCCCccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ----------SIAFVPQQAWIQNATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ----------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.++||+|+|++|+.|++|||.++.. .++ +++.+.++.+++.++++. .....+.+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 147 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGL 147 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccC
Confidence 3899999999999999999987521 122 334555666677655442 235667899
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 148 S~Gq~qrv 155 (250)
T PRK14266 148 SGGQQQRL 155 (250)
T ss_pred CHHHHHHH
Confidence 99999999
No 160
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.8e-20 Score=197.96 Aligned_cols=125 Identities=24% Similarity=0.404 Sum_probs=100.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g---- 734 (950)
.++++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++ +++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN---------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC---------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence 4889999999953 469999999999999999999999999999999999997 4799998875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++|++|++.+++.|++|||.++... ++ ++.+++++.+++.+++ ......+..+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhh
Confidence 38999999999999999999876321 11 2344555555554322 1223457789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 148 LS~Gq~qr~ 156 (251)
T PRK14251 148 FSGGQQQRI 156 (251)
T ss_pred CCHHHHHHH
Confidence 999999999
No 161
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.81 E-value=6.2e-20 Score=193.60 Aligned_cols=124 Identities=27% Similarity=0.441 Sum_probs=101.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|++. .....+|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGHG-----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccCC-----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhH
Confidence 6789999999641 0125699999999999999999999999999999999999999999998875
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.|+|++|+|-++. .|+.||+.++.. .+. ++.+++++.+++.++++..| .+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G 145 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGG 145 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHH
Confidence 3899999999887 799999987542 111 24566666667765555544 489999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
||||+
T Consensus 146 ~~qrv 150 (220)
T TIGR02982 146 QKQRV 150 (220)
T ss_pred HHHHH
Confidence 99999
No 162
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.4e-20 Score=197.74 Aligned_cols=127 Identities=26% Similarity=0.408 Sum_probs=103.1
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC--
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG-- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g-- 734 (950)
...++++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred CceEEEEEEEEEECC---------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence 356999999999964 4699999999999999999999999999999999999875 799998754
Q ss_pred ---------------eEEEEeccCcCCCccHHHHHhcCCC---C-----ChhHHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 ---------------SIAFVPQQAWIQNATLRDNIVFGKT---H-----VPRRYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 ---------------~Iayv~Q~pwL~ngTIreNIlfg~~---~-----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.|+|++|++.++.+|++|||.++.. . .+++.+++++.+++.+++. +..+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~ 157 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGD 157 (265)
T ss_pred ccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhC
Confidence 3899999999999999999987632 1 1234455555665544332 44567
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
...+|||||||||
T Consensus 158 ~~~~LS~G~~qrv 170 (265)
T PRK14252 158 LAFNLSGGQQQRL 170 (265)
T ss_pred CcccCCHHHHHHH
Confidence 7889999999999
No 163
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7e-20 Score=199.36 Aligned_cols=126 Identities=25% Similarity=0.423 Sum_probs=101.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g--- 734 (950)
+.++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||+++|.|.+++ ++|+|.++|
T Consensus 24 ~~l~~~nl~~~~~~---------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i 94 (272)
T PRK14236 24 TALEVRNLNLFYGD---------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI 94 (272)
T ss_pred cEEEEEEEEEEECC---------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEEC
Confidence 46899999999953 4699999999999999999999999999999999999874 899998765
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.++|++|++.+++.|++|||.++..+ .+ ++.+++++.+++.+++. +..+.++.
T Consensus 95 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 167 (272)
T PRK14236 95 YDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAF 167 (272)
T ss_pred cccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcc
Confidence 48999999999999999999876321 11 22344444445544332 34577889
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 168 ~LS~Gq~qrv 177 (272)
T PRK14236 168 GLSGGQQQRL 177 (272)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 164
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.4e-20 Score=196.61 Aligned_cols=125 Identities=25% Similarity=0.392 Sum_probs=101.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE---------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC---------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 5889999999953 4699999999999999999999999999999999999875 799999875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++|++|++.+++.|++|||.|+... +. ++.+++++.+++.++++. ....+...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCccc
Confidence 38999999999999999999986321 11 234456666666544332 24456789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 148 LS~G~~qrv 156 (251)
T PRK14270 148 LSGGQQQRL 156 (251)
T ss_pred CCHHHHHHH
Confidence 999999999
No 165
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=9.3e-20 Score=198.82 Aligned_cols=122 Identities=29% Similarity=0.437 Sum_probs=100.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+. ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSG--------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCC--------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 4789999999963 34699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ----SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.++||+|+| .+++.|++|||.++.. .++ ++.++.++.++|.+.+...| ..||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~ 143 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEK 143 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHH
Confidence 389999997 4778999999987532 332 23455666666655444433 48999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
||+
T Consensus 144 qrl 146 (277)
T PRK13652 144 KRV 146 (277)
T ss_pred HHH
Confidence 999
No 166
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=197.70 Aligned_cols=126 Identities=21% Similarity=0.352 Sum_probs=99.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
..++++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE---------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC---------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 46899999999963 469999999999999999999999999999999999864 6899998765
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCCC----h----hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTHV----P----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~d----~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|++.++++|++|||.++..+. . ++.+++++.+++..++ ......+..
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcc
Confidence 489999999999999999998763211 1 1223333444443222 133456778
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+||||||||+
T Consensus 164 ~LSgGq~qrl 173 (268)
T PRK14248 164 SLSGGQQQRL 173 (268)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 167
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-19 Score=195.77 Aligned_cols=123 Identities=31% Similarity=0.449 Sum_probs=99.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG---------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC---------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHH
Confidence 789999999963 4699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeccCcC-CCccHHHHHhcCCC-CC------hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWI-QNATLRDNIVFGKT-HV------PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL-~ngTIreNIlfg~~-~d------~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
.++|++|++.+ ++.|++||+.++.. .. +++.+++++..++.+.. ......||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHH
Confidence 38999999987 77899999988642 11 12334445555554332 23456999999999
Q ss_pred ccHH
Q psy16196 804 VKWQ 807 (950)
Q Consensus 804 I~~~ 807 (950)
|...
T Consensus 143 v~la 146 (258)
T PRK13548 143 VQLA 146 (258)
T ss_pred HHHH
Confidence 9544
No 168
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.7e-20 Score=196.09 Aligned_cols=125 Identities=26% Similarity=0.418 Sum_probs=99.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|++ .++|+|+||+|++||+++|+||+|||||||+++|.|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD---------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC---------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4889999999963 4699999999999999999999999999999999998763 689999875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC----C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH----V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+||+|++.+++.|++|||.++... + +++.+++++.+++.+++. ........+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 38999999999999999999986321 1 122334444555543332 234567789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 147 LS~G~~qrv 155 (250)
T PRK14240 147 LSGGQQQRL 155 (250)
T ss_pred CCHHHHHHH
Confidence 999999999
No 169
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.9e-20 Score=197.13 Aligned_cols=127 Identities=24% Similarity=0.443 Sum_probs=100.3
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC--
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG-- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g-- 734 (950)
...++++|+++.|++ .++|+|+||+|++|++++|+|++|||||||+++|.|..+| ++|+|.++|
T Consensus 10 ~~~l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 10 QPQIKVENLNLWYGE---------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred ceeEEEeeeEEEeCC---------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE
Confidence 346999999999853 4699999999999999999999999999999999999875 799998865
Q ss_pred -------------eEEEEeccCcCCCccHHHHHhcCCC---CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 -------------SIAFVPQQAWIQNATLRDNIVFGKT---HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 -------------~Iayv~Q~pwL~ngTIreNIlfg~~---~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.++|++|++.+++.|++|||.++.. .+.+ +.+++++.+++.+++. .....+..
T Consensus 81 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 153 (258)
T PRK14268 81 IYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPAL 153 (258)
T ss_pred cccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChh
Confidence 3899999999999999999997632 2222 2234445555533221 23345677
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 154 ~LSgG~~qrv 163 (258)
T PRK14268 154 SLSGGQQQRL 163 (258)
T ss_pred hCCHHHHHHH
Confidence 9999999999
No 170
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.8e-20 Score=200.06 Aligned_cols=126 Identities=22% Similarity=0.399 Sum_probs=97.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+... ....++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~----~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 3 INLQNVSYTYQAGT----PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEEEcCCCC----ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 78999999996410 0014699999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccC--cCCCccHHHHHhcCCC---CChhH----HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQA--WIQNATLRDNIVFGKT---HVPRR----YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+|++|+| .+++.|++|||.++.. .+.+. .+++++..+|.++ ....+..+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 148 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSG 148 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCH
Confidence 289999998 6889999999987532 22221 2333444444321 12345678999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 149 G~~qrv 154 (280)
T PRK13649 149 GQMRRV 154 (280)
T ss_pred HHHHHH
Confidence 999999
No 171
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.1e-20 Score=199.53 Aligned_cols=121 Identities=29% Similarity=0.475 Sum_probs=97.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. ..++++|+||+|++||.++|+||+|||||||+++|.|.+++.+|+|.++|
T Consensus 2 l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPD--------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchH
Confidence 678999999963 34699999999999999999999999999999999999999999998876
Q ss_pred -----eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+|++|+| .+++.|++|||.++.. ... ++..++++.++|.+..+ .....|||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq 142 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQ 142 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHH
Confidence 389999997 6888999999987632 111 23445555555542222 2345899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 143 ~qrv 146 (275)
T PRK13639 143 KKRV 146 (275)
T ss_pred HHHH
Confidence 9999
No 172
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.81 E-value=6.9e-20 Score=195.41 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=96.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA---------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh
Confidence 678999999953 4699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeccCcC-CCccHHHHHhcCCC---CChhH----HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWI-QNATLRDNIVFGKT---HVPRR----YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL-~ngTIreNIlfg~~---~d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.+ ++.|++|||.++.. ...+. .++.++..+ .+.....+..+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLG-----------LAERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHH
Confidence 38999999987 67899999987532 12211 122233322 23334566679999999999
No 173
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=9.8e-20 Score=199.60 Aligned_cols=126 Identities=29% Similarity=0.471 Sum_probs=98.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|.+.. ....++|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 3 IKFENVDYIYSPGT----PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEcCCCC----CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996310 0024699999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -------SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+|++|+| .+++.|++|||.|+.. .+. ++.+++++.++|+.++ ...+..+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSG 148 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCH
Confidence 279999998 5788999999987532 221 2334555555554222 2334568999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 149 Gq~qrl 154 (287)
T PRK13641 149 GQMRRV 154 (287)
T ss_pred HHHHHH
Confidence 999999
No 174
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=9.8e-20 Score=196.05 Aligned_cols=120 Identities=26% Similarity=0.405 Sum_probs=97.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------eE
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SI 736 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------~I 736 (950)
++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG---------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC---------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcE
Confidence 678999999953 4699999999999999999999999999999999999999999999976 48
Q ss_pred EEEeccCcCCC-ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 737 AFVPQQAWIQN-ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 737 ayv~Q~pwL~n-gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|++|++.++. .|++||+.++.. .+. ++.+++++.+++.+.. ..+..+||||||||+
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl 137 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRV 137 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHH
Confidence 99999998886 699999987532 121 2334455555554332 234578999999999
No 175
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.81 E-value=5.2e-20 Score=195.95 Aligned_cols=120 Identities=25% Similarity=0.454 Sum_probs=95.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK---------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC---------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhH
Confidence 467899999953 4699999999999999999999999999999999999999999999875
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCCC---Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKTH---VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~~---d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
.++|++|++.++.+ |++||+.++.+. ..+ +.++.++..++ +........+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 38999999988886 999999875321 111 22233333333 33345566799999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
|+
T Consensus 141 rl 142 (232)
T cd03218 141 RV 142 (232)
T ss_pred HH
Confidence 99
No 176
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=8.2e-20 Score=199.57 Aligned_cols=127 Identities=26% Similarity=0.428 Sum_probs=102.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+.... ...+++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEE---STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccH
Confidence 5889999999964100 0135799999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCc--CCCccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAW--IQNATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pw--L~ngTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+||+|+|. +++.|++|||.|+.. .+ +++.+++++.++|.+.++..| ..|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~ 149 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQ 149 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHH
Confidence 3899999984 677899999998632 12 234566677777766555544 5899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 150 ~qrv 153 (280)
T PRK13633 150 KQRV 153 (280)
T ss_pred HHHH
Confidence 9999
No 177
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.2e-20 Score=196.56 Aligned_cols=125 Identities=22% Similarity=0.416 Sum_probs=98.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cc---cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DK---ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~---~~G~I~i~g---- 734 (950)
.++++|++++|++ .++|+|+||+|++||.++|+||+|||||||+++|.|.. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK---------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC---------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence 5889999999963 46999999999999999999999999999999999985 36 489998875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCC----CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKT----HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+||+|++.+++.|++|||.++.. .+++ +.+++++.+++.+.+. +....+..+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 3999999999999999999987531 1111 2223344444433222 345667789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 149 LS~G~~qrv 157 (252)
T PRK14239 149 LSGGQQQRV 157 (252)
T ss_pred CCHHHHHHH
Confidence 999999999
No 178
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.1e-20 Score=196.61 Aligned_cols=125 Identities=23% Similarity=0.423 Sum_probs=100.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC---Ccc--cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE---MDK--ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe---~~~--~~G~I~i~g---- 734 (950)
.++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|. .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD---------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC---------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 4889999999953 4699999999999999999999999999999999986 454 589998875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCC----CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKT----HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~----~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+|++|++.+++.|++|||.++.. .+ +++.+++++.+++.++++ +....++.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 3899999999999999999987532 11 123455666666654443 234567789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 147 LS~G~~qrv 155 (250)
T PRK14245 147 LSGGQQQRL 155 (250)
T ss_pred CCHHHHHHH
Confidence 999999999
No 179
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=198.55 Aligned_cols=126 Identities=23% Similarity=0.434 Sum_probs=101.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
..++++|+++.|.. .++|+|+||+|++|++++|+||+|||||||+++|.|.++ |++|+|.++|
T Consensus 38 ~~l~i~~l~~~~~~---------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 38 TVIEARDLNVFYGD---------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred ceEEEEEEEEEECC---------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 46899999999953 469999999999999999999999999999999999987 6899998865
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCC---CC---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKT---HV---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~---~d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.++|++|++.++..|++|||.++.. .. +++.+++++..++.+++. .....+..+|
T Consensus 109 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~L 181 (285)
T PRK14254 109 YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDL 181 (285)
T ss_pred cccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccC
Confidence 3899999999999999999987532 11 223344455555543332 1345677899
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 182 SgGe~qrv 189 (285)
T PRK14254 182 SGGQQQRL 189 (285)
T ss_pred CHHHHHHH
Confidence 99999999
No 180
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=197.96 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=100.9
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g--- 734 (950)
..++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 90 (276)
T PRK14271 20 PAMAAVNLTLGFAG---------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90 (276)
T ss_pred cEEEEeeEEEEECC---------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc
Confidence 36899999999963 4799999999999999999999999999999999999985 699998875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCC----CChhHH----HHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKT----HVPRRY----NKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~~~y----~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+|++|+|.+|+.|++|||.++.. .+++.+ .+.++.+++.+. ..+....+..+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~ 163 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFR 163 (276)
T ss_pred cccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCccc
Confidence 4899999999999999999997632 122222 233444444322 22345667889
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 164 LSgGq~qrl 172 (276)
T PRK14271 164 LSGGQQQLL 172 (276)
T ss_pred CCHHHHHHH
Confidence 999999999
No 181
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.80 E-value=7.9e-20 Score=189.48 Aligned_cols=120 Identities=22% Similarity=0.325 Sum_probs=97.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE---------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC---------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHh
Confidence 367899999853 4699999999999999999999999999999999999999999999877
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCCC---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKTH---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.++. .|++||+.++.+. ++++.+++++..++.+.++ .+..+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 136 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRL 136 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHH
Confidence 4899999998876 7999999775332 1234555666666654332 23357999999999
No 182
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.80 E-value=6.3e-20 Score=191.61 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=94.0
Q ss_pred EEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------------
Q psy16196 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734 (950)
Q Consensus 667 ~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------------ 734 (950)
++|+++.|++ .++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD---------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC---------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHH
Confidence 3678888853 4699999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCCC---C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKTH---V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~~---d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.++||+|++.++. .|++||+.++..+ + +++.+++++..++.++. .....+||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~ 140 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQ 140 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHH
Confidence 3899999999986 7999999885321 1 22334455555553332 334568999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
||+
T Consensus 141 qr~ 143 (206)
T TIGR03608 141 QRV 143 (206)
T ss_pred HHH
Confidence 999
No 183
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1e-19 Score=196.19 Aligned_cols=125 Identities=24% Similarity=0.391 Sum_probs=99.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|..++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 6 ILSTKNLNLWYGE---------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76 (253)
T ss_pred eEEEeeeEEEECC---------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 5899999999953 4699999999999999999999999999999999998753 489998765
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+|++|++.+++.|++|||.++... +.. +-+++++.+++.+++ .+..+..+.+
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 149 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALS 149 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhh
Confidence 38999999999999999999987431 111 112233333443333 3456778889
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 150 LS~G~~qrv 158 (253)
T PRK14261 150 LSGGQQQRL 158 (253)
T ss_pred CCHHHHHHH
Confidence 999999999
No 184
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=196.74 Aligned_cols=125 Identities=25% Similarity=0.411 Sum_probs=101.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g---- 734 (950)
.++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.++ +++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 10 VLRTENLNVYYGS---------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred EEEEeeeEEEECC---------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence 5899999999963 469999999999999999999999999999999999876 3799998865
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC---C---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH---V---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~---d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
+|+|++|++.+++.|++|||.++... . +++.+++++.+++.+++. .....++.+||
T Consensus 81 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 153 (264)
T PRK14243 81 APDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLS 153 (264)
T ss_pred ccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCC
Confidence 38999999999999999999986432 1 123344556666654443 22456778999
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
||||||+
T Consensus 154 gGq~qrv 160 (264)
T PRK14243 154 GGQQQRL 160 (264)
T ss_pred HHHHHHH
Confidence 9999999
No 185
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=9.7e-20 Score=189.71 Aligned_cols=120 Identities=25% Similarity=0.296 Sum_probs=99.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE---------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC---------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHh
Confidence 678999999853 4689999999999999999999999999999999999999999999886
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCCC----ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKTH----VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~~----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++|++|++.++. .|++|||.++.+. ++++.+++++.++|.+..+ .+...||||||||+
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl 138 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRV 138 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHH
Confidence 4899999988775 6999999876432 3345566777777754332 23467999999999
No 186
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=1.4e-19 Score=182.41 Aligned_cols=122 Identities=23% Similarity=0.406 Sum_probs=106.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..|+++++++++. +..+|+||||+|++||.++|+||+||||||||++|+|++.|++|+|.++|
T Consensus 7 ~~I~vr~v~~~fG---------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 7 PLIEVRGVTKSFG---------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred ceEEEeeeeeecC---------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence 5799999999995 46799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeccCcCCCc-cHHHHHhcC----CCCChhHHHHH----HHHhcCCch-hhhCCCCCcccccCCCCCC
Q psy16196 735 --------SIAFVPQQAWIQNA-TLRDNIVFG----KTHVPRRYNKV----IDACALTPD-FEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 --------~Iayv~Q~pwL~ng-TIreNIlfg----~~~d~~~y~~V----i~ac~L~~D-i~~Lp~Gd~T~IGe~G~~L 796 (950)
++|++.|+--||+. ||+|||.|. ...+++..++. +++++|..+ .+.+| ..|
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sEL 146 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SEL 146 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhh
Confidence 69999999999975 999999994 23444444443 567888877 78888 479
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|||.|.|+
T Consensus 147 SGGM~KRv 154 (263)
T COG1127 147 SGGMRKRV 154 (263)
T ss_pred cchHHHHH
Confidence 99999999
No 187
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.1e-19 Score=188.81 Aligned_cols=109 Identities=27% Similarity=0.428 Sum_probs=92.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc---ccCCeeEeCC------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD---KISGRVNTKG------ 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~---~~~G~I~i~g------ 734 (950)
.+.++|++|.|+.+. ++.++|+|+||+|++|++++|+||+|||||||+++|.|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~-----~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGR-----SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCC-----CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc
Confidence 478999999998521 24579999999999999999999999999999999999999 8999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|++.++. .|++|||.++.... ..++...||||||||+
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl 127 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRV 127 (202)
T ss_pred hhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHH
Confidence 4899999998886 59999998753210 2234568999999999
No 188
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.80 E-value=1e-19 Score=197.67 Aligned_cols=122 Identities=21% Similarity=0.320 Sum_probs=97.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN---------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh
Confidence 36899999999953 4699999999999999999999999999999999999999999999876
Q ss_pred --------eEEEEeccCcCCCc-cHHHHHhcCC----CCChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 --------SIAFVPQQAWIQNA-TLRDNIVFGK----THVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 --------~Iayv~Q~pwL~ng-TIreNIlfg~----~~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|+|++|++.++.. |++|||.++. ..+.+ +.++.++.+++.+..+ .+..+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCC
Confidence 38999999999886 9999998642 12221 2233444444433222 2345899
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
|||||||
T Consensus 146 gGq~qrv 152 (269)
T PRK11831 146 GGMARRA 152 (269)
T ss_pred HHHHHHH
Confidence 9999999
No 189
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.80 E-value=8.1e-20 Score=193.96 Aligned_cols=125 Identities=25% Similarity=0.390 Sum_probs=94.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+... ...++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG-----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC-----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhh
Confidence 67899999996410 013699999999999999999999999999999999999999999999875
Q ss_pred ------eEEEEeccCc--C-CCccHHHHHhcCCC-----CChhHHH----HHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------SIAFVPQQAW--I-QNATLRDNIVFGKT-----HVPRRYN----KVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------~Iayv~Q~pw--L-~ngTIreNIlfg~~-----~d~~~y~----~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.++|++|+|. + .+.|++|||.++.. .+++..+ +.++..++. ......+..+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 146 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHEL 146 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhc
Confidence 3899999993 3 36899999976421 1111111 222333321 12345566789
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 147 S~G~~qrv 154 (228)
T cd03257 147 SGGQRQRV 154 (228)
T ss_pred CHHHHHHH
Confidence 99999999
No 190
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=197.11 Aligned_cols=126 Identities=24% Similarity=0.407 Sum_probs=99.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
..++++|+++.|++ .++|+|+||+|++|++++|+|++|||||||+++|.|.++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 23 VVFDTQNLNLWYGE---------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred eEEEEeeeEEEECC---------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 35899999999963 469999999999999999999999999999999999987 6999998876
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCC---C-ChhH-H---HHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKT---H-VPRR-Y---NKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~---~-d~~~-y---~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|+|.++..|++|||.++.. . +++. . .++++..++.+++ ......++.
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~ 166 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAY 166 (271)
T ss_pred ccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcc
Confidence 3899999999999999999987532 1 1111 1 2222333332233 234567788
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+||||||||+
T Consensus 167 ~LSgGe~qrv 176 (271)
T PRK14238 167 GLSGGQQQRL 176 (271)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 191
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.4e-19 Score=195.35 Aligned_cols=120 Identities=26% Similarity=0.450 Sum_probs=97.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|++ .++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT---------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC---------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHH
Confidence 689999999953 4699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeccCcCCCc-cHHHHHhcCCC-----C---C---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ---SIAFVPQQAWIQNA-TLRDNIVFGKT-----H---V---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ng-TIreNIlfg~~-----~---d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.++|++|++.++.+ |++||+.++.. + . +++.+++++.+++.+.. ..+...||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHH
Confidence 39999999988876 99999998631 1 1 12333444444443322 2345789999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 143 ~~qrv 147 (255)
T PRK11231 143 QRQRA 147 (255)
T ss_pred HHHHH
Confidence 99999
No 192
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.80 E-value=6e-20 Score=195.18 Aligned_cols=121 Identities=26% Similarity=0.460 Sum_probs=96.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ---------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC---------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHH
Confidence 468899999963 4699999999999999999999999999999999999999999999875
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCCC-C---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKTH-V---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~~-d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++|++|++.++.. |++||+.++... . .+.++++++..+ +.......+..+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv 140 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQL 140 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHH
Confidence 48999999999876 999999876422 1 122333333332 112234456678999999999
No 193
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.4e-19 Score=193.81 Aligned_cols=120 Identities=28% Similarity=0.362 Sum_probs=94.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. +++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 3 IQLNGINCFYGA---------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEeeEEEECC---------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccc
Confidence 678999999953 4699999999999999999999999999999999999999999999865
Q ss_pred ---------eEEEEeccCcCCC-ccHHHHHhcCC-----CCCh---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ---------SIAFVPQQAWIQN-ATLRDNIVFGK-----THVP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ---------~Iayv~Q~pwL~n-gTIreNIlfg~-----~~d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+|++|++-++. .|++|||.++. ...+ ++.++.++..++.+. +.....+|
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~L 142 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHL 142 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhC
Confidence 3899999999886 49999997421 1111 122333444444333 33344689
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 143 S~G~~qrv 150 (242)
T PRK11124 143 SGGQQQRV 150 (242)
T ss_pred CHHHHHHH
Confidence 99999999
No 194
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=9.6e-20 Score=193.72 Aligned_cols=120 Identities=28% Similarity=0.407 Sum_probs=100.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
+.++|++++|+. .++++|+||++++|+.++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG---------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC---------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhh
Confidence 368899999963 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccCcCCCc-cHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQNA-TLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~ng-TIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|++-++.+ |++||+.++.. .+ +++.+++++..++.+.++..| .+||||||||+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl 139 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRV 139 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHH
Confidence 48999999999865 99999987532 12 234556666667765555544 58999999999
No 195
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.7e-19 Score=196.10 Aligned_cols=124 Identities=25% Similarity=0.395 Sum_probs=98.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.++++|+++.|+. ...++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~-------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 6 SIIVFKNVSFQYQS-------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF 78 (269)
T ss_pred ceEEEEEEEEEcCC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 35899999999964 234699999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCc--CCCccHHHHHhcCCCC---Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAW--IQNATLRDNIVFGKTH---VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pw--L~ngTIreNIlfg~~~---d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+||+|+|+ +++.|+++|+.++... ..+ +.+++++..++.+.. ..+..+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~ 147 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQ 147 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHH
Confidence 4899999995 5677899999887431 121 223344444443322 23456899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 148 ~qrl 151 (269)
T PRK13648 148 KQRV 151 (269)
T ss_pred HHHH
Confidence 9999
No 196
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.80 E-value=1.4e-19 Score=204.93 Aligned_cols=121 Identities=27% Similarity=0.470 Sum_probs=99.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~L~~~nls~~y~~---------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD---------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC---------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHH
Confidence 4789999999963 5799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcC-CCccHHHHHhcCCC-----C------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 ----SIAFVPQQAWI-QNATLRDNIVFGKT-----H------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 ----~Iayv~Q~pwL-~ngTIreNIlfg~~-----~------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
+|+||+|++-+ ++.|++||+.+|+. + +.++.+++++..++.+..+. ...+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCH
Confidence 49999999987 78999999988742 1 12334555555565443322 3468999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 143 GerQRv 148 (402)
T PRK09536 143 GERQRV 148 (402)
T ss_pred HHHHHH
Confidence 999999
No 197
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.80 E-value=5.9e-20 Score=178.68 Aligned_cols=105 Identities=35% Similarity=0.594 Sum_probs=93.5
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCcc-HHHHH
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNAT-LRDNI 754 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngT-IreNI 754 (950)
|+|+||+|++|++++|+|++|||||||+++|.|.+++.+|+|.++| .++|++|+++++++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999886 699999999998876 9999
Q ss_pred hcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 755 VFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 755 lfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
.++++++++++.+++.+ ..++.++.++..|||||||||..
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~l 119 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLAL 119 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHH
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHH
Confidence 44567888888887755 45677888999999999999843
No 198
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=1.4e-19 Score=193.62 Aligned_cols=120 Identities=27% Similarity=0.425 Sum_probs=95.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP---------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC---------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhH
Confidence 678999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCC----CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKT----HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~----~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.++|++|++.++. .|++||+.++.. .+.+ +.+++++..+++ .....+...|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHH
Confidence 3899999998875 699999988631 1222 223333333332 22334557899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 142 ~qrv 145 (240)
T PRK09493 142 QQRV 145 (240)
T ss_pred HHHH
Confidence 9999
No 199
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.8e-19 Score=196.57 Aligned_cols=124 Identities=30% Similarity=0.473 Sum_probs=99.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+.. ...++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHH
Confidence 48899999999641 134699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ----SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ----~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.|+|++|+| .+++.|+.|||.++.. ... ++.+++++.++|.+..+. ....||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~ 146 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQK 146 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHH
Confidence 389999998 4778999999987532 121 233455555565433322 3468999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
||+
T Consensus 147 qrv 149 (277)
T PRK13642 147 QRV 149 (277)
T ss_pred HHH
Confidence 999
No 200
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.80 E-value=2.3e-19 Score=192.51 Aligned_cols=121 Identities=22% Similarity=0.405 Sum_probs=102.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
.++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 4 ~l~~~~l~~~~~~---------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q 74 (251)
T PRK09544 4 LVSLENVSVSFGQ---------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQ 74 (251)
T ss_pred EEEEeceEEEECC---------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecc
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 6999999
Q ss_pred cCcCCC---ccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 742 QAWIQN---ATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 742 ~pwL~n---gTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.++. .|+++|+.+....++++.+++++.+++.+.++. ....||||||||+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv 129 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRV 129 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHH
Confidence 998764 489999877544445566777888877654432 3468999999999
No 201
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=199.70 Aligned_cols=128 Identities=23% Similarity=0.451 Sum_probs=96.9
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.++++|+++.|+.... ...++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP----FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCc----cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc
Confidence 45899999999964100 013699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEeccC--cCCCccHHHHHhcCCCC---Ch-hHHH---HHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ----------SIAFVPQQA--WIQNATLRDNIVFGKTH---VP-RRYN---KVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ----------~Iayv~Q~p--wL~ngTIreNIlfg~~~---d~-~~y~---~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+||+|+| .+++.|++|||.|+..+ +. +..+ ++++.++| |.+ .......+
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~ 150 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFE 150 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhh
Confidence 389999998 46788999999986421 11 1122 22333333 222 12355678
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 151 LS~Gq~qrv 159 (289)
T PRK13645 151 LSGGQKRRV 159 (289)
T ss_pred CCHHHHHHH
Confidence 999999999
No 202
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2e-19 Score=194.26 Aligned_cols=124 Identities=21% Similarity=0.337 Sum_probs=97.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. .++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG---------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC---------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHH
Confidence 5899999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCCc-cHHHHHhcCCC-----------C-----Ch---hHHHHHHHHhcCCchhhhCCCCCcccc
Q psy16196 735 -----SIAFVPQQAWIQNA-TLRDNIVFGKT-----------H-----VP---RRYNKVIDACALTPDFEMLPAGDSTEI 789 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ng-TIreNIlfg~~-----------~-----d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~I 789 (950)
.++|++|+|.++.. |++|||.++.. + ++ +..+++.+ .++.+ |.+...
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--gl~~~~ 147 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT------WLERV--GLLEHA 147 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH------HHHhC--Chhhhh
Confidence 28899999999985 99999998631 0 00 00111111 12222 333445
Q ss_pred cCCCCCCCHHHhhcc
Q psy16196 790 GEKGINLSGGQKQRV 804 (950)
Q Consensus 790 Ge~G~~LSGGQKQRI 804 (950)
..+..+||||||||+
T Consensus 148 ~~~~~~LS~G~~qrv 162 (255)
T PRK11300 148 NRQAGNLAYGQQRRL 162 (255)
T ss_pred hCChhhCCHHHHHHH
Confidence 667789999999999
No 203
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=193.33 Aligned_cols=125 Identities=23% Similarity=0.399 Sum_probs=97.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|++++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ---------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC---------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 4789999999963 4699999999999999999999999999999999999974 699999876
Q ss_pred ---------eEEEEeccCcC-CCccHHHHHhcCCCC-----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ---------SIAFVPQQAWI-QNATLRDNIVFGKTH-----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ---------~Iayv~Q~pwL-~ngTIreNIlfg~~~-----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+|++|+|-+ ++.|++||+.++... +. ++.++.++.++|.+.++ ........+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 48999999864 578999999876321 11 22344455555543221 123345678
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 147 LSgG~~qrv 155 (250)
T PRK14247 147 LSGGQQQRL 155 (250)
T ss_pred CCHHHHHHH
Confidence 999999999
No 204
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.80 E-value=1.6e-19 Score=199.50 Aligned_cols=121 Identities=22% Similarity=0.411 Sum_probs=95.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~---------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 4 AIDLVGVSKSYGD---------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74 (303)
T ss_pred EEEEEeEEEEeCC---------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHH
Confidence 5899999999963 4699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeccCcCC-CccHHHHHhc-CCC--CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWIQ-NATLRDNIVF-GKT--HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL~-ngTIreNIlf-g~~--~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
.|+|++|++.++ +.|++||+.+ +.. .+.+ +.+++++.++|.+ ..++ +..+||||||||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~----~~~~LSgG~~qr 143 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADV----RVALLSGGMKRR 143 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcC----chhhCCHHHHHH
Confidence 499999999887 4799999975 221 2221 2233444444432 2233 335799999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
+
T Consensus 144 v 144 (303)
T TIGR01288 144 L 144 (303)
T ss_pred H
Confidence 9
No 205
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=193.75 Aligned_cols=125 Identities=25% Similarity=0.426 Sum_probs=99.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|+. +++|+|+||+|++|++++|+||+|||||||+++|.|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYGE---------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred eEEEeccEEEECC---------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 4789999999953 4699999999999999999999999999999999999986 589998875
Q ss_pred ----------eEEEEeccCcCCCccHHHHHhcCCCC---C-hh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ----------SIAFVPQQAWIQNATLRDNIVFGKTH---V-PR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ----------~Iayv~Q~pwL~ngTIreNIlfg~~~---d-~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.++|++|++.++..|++|||.++... + ++ +.+++++..++.+++. +.......+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~L 146 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGL 146 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccC
Confidence 38999999999999999999976321 1 11 2223344444444332 3456677899
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 147 S~G~~qrv 154 (249)
T PRK14253 147 SGGQQQRL 154 (249)
T ss_pred CHHHHHHH
Confidence 99999999
No 206
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=194.43 Aligned_cols=125 Identities=26% Similarity=0.471 Sum_probs=99.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|++ .++|+|+||+|++||+++|+||+|||||||+++|.|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 3 IIEIENFSAYYGE---------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred eEEEEeeEEEeCC---------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 4789999999953 4699999999999999999999999999999999999874 899998875
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCCC----ChhHH----HHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKTH----VPRRY----NKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~~~y----~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++|++|+|.++..|++||+.++... .++.. ++.++..++.++++ +....+..+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTR 146 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhh
Confidence 49999999999999999999875321 11122 22333334443332 335677889
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 147 LS~Gq~qr~ 155 (250)
T PRK14262 147 LSGGQQQRL 155 (250)
T ss_pred cCHHHHHHH
Confidence 999999999
No 207
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-19 Score=195.15 Aligned_cols=124 Identities=23% Similarity=0.407 Sum_probs=97.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC-----
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG----- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g----- 734 (950)
-+++|+++.|++ .++|+|+||+|++|++++|+|++|||||||+++|.|..+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYGS---------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEECC---------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 368899999953 479999999999999999999999999999999999986 4699998865
Q ss_pred ----------eEEEEeccCcCCCccHHHHHhcCCCC-----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ----------SIAFVPQQAWIQNATLRDNIVFGKTH-----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ----------~Iayv~Q~pwL~ngTIreNIlfg~~~-----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++|++|++.++++|++|||.++... +.+ +.+++++..++.+++. +.++..+.+
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 149 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFE 149 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhh
Confidence 38999999999999999999876211 111 1223344444433221 234567789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 150 LS~Gq~qrv 158 (251)
T PRK14244 150 LSGGQQQRL 158 (251)
T ss_pred CCHHHHHHH
Confidence 999999999
No 208
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=2.1e-19 Score=185.74 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=96.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------e
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------S 735 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------~ 735 (950)
++++|++++|+. +. +.++||+|++|++++|+|++|||||||+++|.|+.+|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---------~~-l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQ---------KN-LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECC---------cE-EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhh
Confidence 678999999953 33 4459999999999999999999999999999999999999999987 3
Q ss_pred EEEEeccCc-CCCccHHHHHhcCCCC--ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 736 IAFVPQQAW-IQNATLRDNIVFGKTH--VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 736 Iayv~Q~pw-L~ngTIreNIlfg~~~--d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++|++|++. +++.|++|||.++... ++++.+++++.+++.++. ..++.+||||||||+
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl 132 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIV 132 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHH
Confidence 899999875 4789999999886432 234455666666664332 345678999999998
No 209
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.79 E-value=1.9e-19 Score=191.96 Aligned_cols=120 Identities=34% Similarity=0.487 Sum_probs=95.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. +++|+|+||++.+||.++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 1 i~i~~l~~~~~~---------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS---------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC---------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhh
Confidence 468899999964 4699999999999999999999999999999999999999999999875
Q ss_pred -eEEEEeccCcCCCc-cHHHHHhcCCCC---Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQNA-TLRDNIVFGKTH---VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~ng-TIreNIlfg~~~---d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|+|-+|.+ |++|||.++.+. +. ++.+++++..++.+..+ ....+||||||||+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl 139 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRV 139 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHH
Confidence 48999999999975 999999886432 21 12233444444433222 33468999999999
No 210
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.7e-19 Score=190.31 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=96.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. .+ .|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHH---------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECC---------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhh
Confidence 678999999963 12 399999999999999999999999999999999999999999886
Q ss_pred -eEEEEeccCcCCCc-cHHHHHhcCCC----CC---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQNA-TLRDNIVFGKT----HV---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~ng-TIreNIlfg~~----~d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++-++.+ |++|||.++.. .. +++.+++++..++++.++..| ..|||||||||
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 138 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRV 138 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHH
Confidence 38999999998875 99999987531 11 223455566666665555555 37999999999
No 211
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=193.71 Aligned_cols=126 Identities=24% Similarity=0.354 Sum_probs=103.9
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g--- 734 (950)
..+.+++.++.|.. .++|+|+||+|++|+.++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 7 IVMDCKLDKIFYGN---------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred ceEEEEeEEEEeCC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 46888999998853 4699999999999999999999999999999999999986 799998876
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCC---CC---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKT---HV---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~---~d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+||+|++++++.|++|||.++.. ++ .++.+++++..+|.+++.. ..+++..+|
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~L 150 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150 (261)
T ss_pred cccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccC
Confidence 3899999999999999999998743 11 2345566666666555432 245678899
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|||||||+
T Consensus 151 S~G~~qrv 158 (261)
T PRK14263 151 SGGQQQRL 158 (261)
T ss_pred CHHHHHHH
Confidence 99999999
No 212
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.79 E-value=1.8e-19 Score=194.18 Aligned_cols=120 Identities=27% Similarity=0.359 Sum_probs=96.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI---------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC---------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 468999999953 4699999999999999999999999999999999999999999998765
Q ss_pred ----------------eEEEEeccCcCCC-ccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccc
Q psy16196 735 ----------------SIAFVPQQAWIQN-ATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEI 789 (950)
Q Consensus 735 ----------------~Iayv~Q~pwL~n-gTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~I 789 (950)
.|+|++|++.++. .|++||+.++.. .+. ++.++.++..++.+. .
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~ 140 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------A 140 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------h
Confidence 3899999998884 899999987521 111 223444444444332 3
Q ss_pred cCCCCCCCHHHhhcc
Q psy16196 790 GEKGINLSGGQKQRV 804 (950)
Q Consensus 790 Ge~G~~LSGGQKQRI 804 (950)
......|||||||||
T Consensus 141 ~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 141 DHMPAQLSGGQQQRV 155 (252)
T ss_pred hcChhhcCHHHHHHH
Confidence 445578999999999
No 213
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.79 E-value=2.1e-19 Score=194.22 Aligned_cols=123 Identities=22% Similarity=0.340 Sum_probs=97.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.++++|+++.|++ .++|+|+||+|++|++++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYGE---------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc
Confidence 46899999999963 4699999999999999999999999999999999999999999998876
Q ss_pred ------------------eEEEEeccCcCCC-ccHHHHHhcCC----CCC-hh---HHHHHHHHhcCCchhhhCCCCCcc
Q psy16196 735 ------------------SIAFVPQQAWIQN-ATLRDNIVFGK----THV-PR---RYNKVIDACALTPDFEMLPAGDST 787 (950)
Q Consensus 735 ------------------~Iayv~Q~pwL~n-gTIreNIlfg~----~~d-~~---~y~~Vi~ac~L~~Di~~Lp~Gd~T 787 (950)
.++||+|++.++. .|++||+.++. ..+ ++ +..++++..++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------- 145 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------- 145 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh---------
Confidence 3899999999987 59999998742 112 11 223333333332221
Q ss_pred cccCCCCCCCHHHhhcc
Q psy16196 788 EIGEKGINLSGGQKQRV 804 (950)
Q Consensus 788 ~IGe~G~~LSGGQKQRI 804 (950)
.......||||||||+
T Consensus 146 -~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 146 -QGKYPVHLSGGQQQRV 161 (257)
T ss_pred -hhCCcccCCHHHHHHH
Confidence 1345678999999999
No 214
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=2.4e-19 Score=192.05 Aligned_cols=120 Identities=25% Similarity=0.349 Sum_probs=96.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG---------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC---------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHH
Confidence 789999999953 4699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCCCC---------------hhHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKTHV---------------PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~~d---------------~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.++|++|++.++.+ |++||+.++...+ +++.++.++..++ +.....+..
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChh
Confidence 39999999999986 9999998864311 1122233333333 223445667
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 143 ~LS~Ge~qrv 152 (242)
T TIGR03411 143 LLSHGQKQWL 152 (242)
T ss_pred hCCHHHHHHH
Confidence 8999999999
No 215
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.79 E-value=2.1e-19 Score=198.24 Aligned_cols=122 Identities=21% Similarity=0.355 Sum_probs=97.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|.+ ..+|+||||+|++|+.++++||+|||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~i~~l~k~~~~---------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD---------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC---------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH
Confidence 36899999999963 4699999999999999999999999999999999999999999999986
Q ss_pred ----eEEEEeccCcCCC-ccHHHHHhcCCC-C--Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ----SIAFVPQQAWIQN-ATLRDNIVFGKT-H--VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ----~Iayv~Q~pwL~n-gTIreNIlfg~~-~--d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
+||||||++-++. .|++||+.|... + +. ++.+++++.++|. +..++.+ .+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~----~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKV----GELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCch----hhCCHHHHH
Confidence 5999999998875 799999985321 1 11 2233444444443 2334444 379999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
|+
T Consensus 146 rl 147 (306)
T PRK13537 146 RL 147 (306)
T ss_pred HH
Confidence 99
No 216
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=3.8e-19 Score=191.54 Aligned_cols=121 Identities=26% Similarity=0.376 Sum_probs=95.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG---------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC---------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc
Confidence 3789999999953 4699999999999999999999999999999999999999999998754
Q ss_pred ------------eEEEEeccCcCCC-ccHHHHHhcCC----CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 ------------SIAFVPQQAWIQN-ATLRDNIVFGK----THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~n-gTIreNIlfg~----~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
.++||+|++.++. .|++||+.++. ..+. ++.+++++..++.+ ....+.
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCCh
Confidence 4899999998885 79999998642 1121 12233344434322 234466
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
.+|||||||||
T Consensus 143 ~~LS~Gq~qrv 153 (250)
T PRK11264 143 RRLSGGQQQRV 153 (250)
T ss_pred hhCChHHHHHH
Confidence 89999999999
No 217
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=3.3e-19 Score=186.04 Aligned_cols=120 Identities=21% Similarity=0.331 Sum_probs=97.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. ..+|+|+||+|++|+.++|+||+|||||||+++|.|+.++++|+|.++|
T Consensus 3 l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 3 LEGEDLACVRGG---------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEeEEEEECC---------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHh
Confidence 789999999963 4689999999999999999999999999999999999999999999987
Q ss_pred eEEEEeccCcC-CCccHHHHHhcCCC---CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIAFVPQQAWI-QNATLRDNIVFGKT---HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Iayv~Q~pwL-~ngTIreNIlfg~~---~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++-+ ++.|++||+.+... .++++.+++++..+|.++.+. | ...||||||||+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~----------~~~LS~G~~qrl 136 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-P----------FGYLSAGQKRRV 136 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-C----------hhhcCHHHHHHH
Confidence 37999988765 47899999987533 223445666666666543222 2 247999999999
No 218
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.79 E-value=2.4e-19 Score=193.68 Aligned_cols=120 Identities=26% Similarity=0.438 Sum_probs=95.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG---------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC---------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHH
Confidence 578999999953 4699999999999999999999999999999999999999999999976
Q ss_pred ---eEEEEeccCc-CCCccHHHHHhcCCC-C------C-h---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ---SIAFVPQQAW-IQNATLRDNIVFGKT-H------V-P---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ---~Iayv~Q~pw-L~ngTIreNIlfg~~-~------d-~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.|+|++|++. .+..|++|||.++.. . + + ++.+++++.+++.+. ...+...||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 141 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGG 141 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHH
Confidence 3899999984 567899999988631 1 1 1 123344444444322 23355689999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
||||+
T Consensus 142 ~~qrl 146 (256)
T TIGR03873 142 ERQRV 146 (256)
T ss_pred HHHHH
Confidence 99999
No 219
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=192.07 Aligned_cols=126 Identities=21% Similarity=0.370 Sum_probs=99.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc--c---cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--K---ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~--~---~~G~I~i~g--- 734 (950)
+.++++|++++|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHFGK---------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEeCC---------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 46899999999963 469999999999999999999999999999999999986 3 589998876
Q ss_pred ------------eEEEEeccCcCCC-ccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 ------------SIAFVPQQAWIQN-ATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~n-gTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
.|+|++|++.++. .|++|||.++.. .+. ++.++.++.+++...++. ..+..+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~ 146 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNA 146 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCc
Confidence 3899999999888 699999987521 121 233455556666443321 233467
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
.+||||||||+
T Consensus 147 ~~LS~G~~qrl 157 (252)
T PRK14256 147 MELSGGQQQRL 157 (252)
T ss_pred CcCCHHHHHHH
Confidence 78999999999
No 220
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.9e-19 Score=193.26 Aligned_cols=125 Identities=22% Similarity=0.411 Sum_probs=100.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|++ .++|+|+||+|++|+.++|+|++|||||||+++|.|++++ ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNT---------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECC---------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence 6899999999963 4699999999999999999999999999999999999885 489998865
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+||+|++.+++.|++|||.++.. +++ ++.+++++.+++.+++.. .....+..
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 150 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALG 150 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCccc
Confidence 4899999999999999999987521 121 233455556666544432 23456789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 151 LS~G~~qrv 159 (259)
T PRK14260 151 LSGGQQQRL 159 (259)
T ss_pred CCHHHHHHH
Confidence 999999999
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.79 E-value=1.4e-19 Score=191.71 Aligned_cols=128 Identities=25% Similarity=0.434 Sum_probs=96.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc---ccCCeeEeCC-------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD---KISGRVNTKG------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~---~~~G~I~i~g------- 734 (950)
+.++|+++.|+... ..+++|+|+||+|++||.++|+||+|||||||+++|.|+++ |++|+|.++|
T Consensus 4 ~~~~~~~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 4 LPWWDVGLKAKNWN-----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred ceeecceeeeecCc-----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 56899999997510 03689999999999999999999999999999999999999 9999999876
Q ss_pred ---eEEEEeccCcCCCc-cHHHHHhcCCCC-----ChhHHH-HHHHHhcCCchhhhCCCCCccccc-CCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWIQNA-TLRDNIVFGKTH-----VPRRYN-KVIDACALTPDFEMLPAGDSTEIG-EKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ng-TIreNIlfg~~~-----d~~~y~-~Vi~ac~L~~Di~~Lp~Gd~T~IG-e~G~~LSGGQKQR 803 (950)
.|+|++|++.++++ |++|||.++..+ ..+... +..+.. .++....+.+. ....+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~l~~~~~~~~~~LS~G~~qr 151 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV-------LLRDLALTRIGGNLVKGISGGERRR 151 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH-------HHHhhcchhhhcccccCcCHHHHHH
Confidence 49999999999987 999999875321 111111 011100 22333333333 3557899999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
+
T Consensus 152 l 152 (226)
T cd03234 152 V 152 (226)
T ss_pred H
Confidence 9
No 222
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.79 E-value=2.8e-19 Score=189.03 Aligned_cols=120 Identities=25% Similarity=0.360 Sum_probs=98.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------e
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------S 735 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------~ 735 (950)
++++|++++|+. .++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 1 l~l~~v~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK---------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC---------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccc
Confidence 357899999853 4699999999999999999999999999999999999999999999876 4
Q ss_pred EEEEeccCcCCC-ccHHHHHhcCC---CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 736 IAFVPQQAWIQN-ATLRDNIVFGK---THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 736 Iayv~Q~pwL~n-gTIreNIlfg~---~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++|++|++-++. .|++||+.++. ..++++.+++++..++++..+ .+..+||||||||+
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv 133 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRL 133 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHH
Confidence 899999998776 69999998643 233455566666666654332 23468999999999
No 223
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=1.7e-19 Score=185.82 Aligned_cols=109 Identities=31% Similarity=0.468 Sum_probs=87.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------------eEEEEeccC--cCCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------------SIAFVPQQA--WIQN 747 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------------~Iayv~Q~p--wL~n 747 (950)
+.++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++| .++|++|+| .+++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 35699999999999999999999999999999999999999999998875 389999998 5788
Q ss_pred ccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 748 ATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 748 gTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|++|||.++.. .+. ++.+++++..++.+..+. +...||||||||+
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 136 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRV 136 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHH
Confidence 999999988531 222 233444555555433332 3468999999999
No 224
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.2e-19 Score=190.94 Aligned_cols=121 Identities=23% Similarity=0.397 Sum_probs=97.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ .++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG---------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC---------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 3789999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCCC----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKTH----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~~----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+||+|++-++. .|++||+.++... +++ +.+++++.. |.+.....+...|||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~ 142 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF-----------HIEHLRDSMGQSLSGGE 142 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHc-----------CCHHHhhcchhhCCHHH
Confidence 4899999998887 5999999876322 211 222223322 22334556678999999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 143 ~qrv 146 (241)
T PRK10895 143 RRRV 146 (241)
T ss_pred HHHH
Confidence 9999
No 225
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.8e-19 Score=193.91 Aligned_cols=122 Identities=28% Similarity=0.403 Sum_probs=98.0
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..+.++|++++|++ ..+|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 6 ARLRGEQLTLGYGK---------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred cEEEEEEEEEEECC---------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH
Confidence 46899999999963 4699999999999999999999999999999999999999999999886
Q ss_pred -----eEEEEeccCcCC-CccHHHHHhcCC-CC-------Ch---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 -----SIAFVPQQAWIQ-NATLRDNIVFGK-TH-------VP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 -----~Iayv~Q~pwL~-ngTIreNIlfg~-~~-------d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|+||+|++-++ +.|++||+.++. +. .+ ++.+++++..++.+. ...+..+||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 145 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLS 145 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCC
Confidence 389999999876 579999998752 11 11 223344444444332 233567899
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
||||||+
T Consensus 146 ~Gq~qrv 152 (265)
T PRK10253 146 GGQRQRA 152 (265)
T ss_pred hHHHHHH
Confidence 9999999
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3e-19 Score=202.02 Aligned_cols=130 Identities=27% Similarity=0.350 Sum_probs=100.7
Q ss_pred cEEEEeeEEEecCCCCC---------------CCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 664 PLVIENGTFTWERNTEG---------------EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~---------------~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
.|+++|++-.|.+.... +.....++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 47788887777542110 001123589999999999999999999999999999999999999999
Q ss_pred eeEeCC-----------------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCC
Q psy16196 729 RVNTKG-----------------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPA 783 (950)
Q Consensus 729 ~I~i~g-----------------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~ 783 (950)
+|.++| +|+||+|++.+|. .|++|||.++.. ++ .++.+++++.++|.+..+..|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 999875 4999999999985 699999998632 22 133455666677765555544
Q ss_pred CCcccccCCCCCCCHHHhhcc
Q psy16196 784 GDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 784 Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.+|||||||||
T Consensus 163 ----------~~LSgGq~QRv 173 (400)
T PRK10070 163 ----------DELSGGMRQRV 173 (400)
T ss_pred ----------ccCCHHHHHHH
Confidence 48999999999
No 227
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.2e-19 Score=192.44 Aligned_cols=125 Identities=22% Similarity=0.371 Sum_probs=97.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS---------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC---------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4889999999953 4699999999999999999999999999999999999987 499998865
Q ss_pred -----------eEEEEeccCcCCCc-cHHHHHhcCCCC-----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 -----------SIAFVPQQAWIQNA-TLRDNIVFGKTH-----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ng-TIreNIlfg~~~-----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
+|+|++|++.++.. |++||+.++... +.+ +.+++++..++.+++. .....+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 38999999999875 999999875321 111 1223333334433222 2345667
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
.+|||||||||
T Consensus 148 ~~LS~G~~qrv 158 (253)
T PRK14267 148 SNLSGGQRQRL 158 (253)
T ss_pred hhCCHHHHHHH
Confidence 89999999999
No 228
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.2e-19 Score=180.70 Aligned_cols=82 Identities=24% Similarity=0.541 Sum_probs=74.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||++++||.++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK---------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC---------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhh
Confidence 357899999863 3699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeccCcCCCc-cHHHHHh
Q psy16196 735 --SIAFVPQQAWIQNA-TLRDNIV 755 (950)
Q Consensus 735 --~Iayv~Q~pwL~ng-TIreNIl 755 (950)
.++||+|++.++.+ |++||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh
Confidence 48999999999886 9999984
No 229
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.3e-19 Score=194.04 Aligned_cols=122 Identities=29% Similarity=0.456 Sum_probs=96.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|++ +.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRN--------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecC--------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhcc
Confidence 5899999999963 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcC---CCccHHHHHhcCCC--------C---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -SIAFVPQQAWI---QNATLRDNIVFGKT--------H---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -~Iayv~Q~pwL---~ngTIreNIlfg~~--------~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.++|++|+|.+ +..++++|+.++.. . ++++.+++++.++|.+..+ .+..+||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 146 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGG 146 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHH
Confidence 49999999864 56689999976421 0 1223344555555543332 233579999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
||||+
T Consensus 147 ~~qrv 151 (272)
T PRK15056 147 QKKRV 151 (272)
T ss_pred HHHHH
Confidence 99999
No 230
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.6e-19 Score=179.92 Aligned_cols=83 Identities=35% Similarity=0.659 Sum_probs=75.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. ...++++|+||+|++|+.++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPG-------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCC-------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHH
Confidence 367899999964 124699999999999999999999999999999999999999999999887
Q ss_pred ---eEEEEeccCcCCCccHHHHH
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNI 754 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNI 754 (950)
.++|++|++.+++.|++||+
T Consensus 74 ~~~~i~~~~~~~~~~~~t~~e~l 96 (171)
T cd03228 74 LRKNIAYVPQDPFLFSGTIRENI 96 (171)
T ss_pred HHhhEEEEcCCchhccchHHHHh
Confidence 48999999999999999998
No 231
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=5.3e-19 Score=185.54 Aligned_cols=122 Identities=21% Similarity=0.314 Sum_probs=96.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++++|++ .++++|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRNE---------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecCC---------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhh
Confidence 35899999999853 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCCc-cHHHHHhcCCCC----ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQNA-TLRDNIVFGKTH----VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~ng-TIreNIlfg~~~----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++.++.. |++|||.++... .+++-++.++..+|.+ . ...+..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~----~~~~~~~LS~G~~qrv 146 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-------Y----EDTLVRQLSAGQKKRL 146 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-------h----ccCChhhCCHHHHHHH
Confidence 38999999988876 999999775322 1122233343333322 1 2234468999999999
No 232
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.8e-19 Score=189.48 Aligned_cols=119 Identities=29% Similarity=0.495 Sum_probs=97.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|.. .+|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~----------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE----------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC----------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhH
Confidence 357899999853 279999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCC-ccHHHHHhcCCCC---C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQN-ATLRDNIVFGKTH---V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~n-gTIreNIlfg~~~---d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|++.++. .|++||+.++... + +++.++.++.++|.++++.. ..+||||||||+
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl 138 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRV 138 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHH
Confidence 5899999999885 7999999876321 1 12234555666665554443 357999999999
No 233
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4e-19 Score=193.42 Aligned_cols=120 Identities=26% Similarity=0.323 Sum_probs=95.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQD---------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcCC---------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCH
Confidence 678999999953 4699999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEeccCc--CCCccHHHHHhcCCC---CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAW--IQNATLRDNIVFGKT---HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pw--L~ngTIreNIlfg~~---~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+|++|+|. ++..|+.|||.++.. .+++ +.+++++.+++.+.. .....+|||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~ 141 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQ 141 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHH
Confidence 3899999985 677899999987521 2221 223444555553322 23456899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 142 ~qrl 145 (271)
T PRK13638 142 KKRV 145 (271)
T ss_pred HHHH
Confidence 9999
No 234
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.78 E-value=5.4e-19 Score=191.70 Aligned_cols=123 Identities=26% Similarity=0.443 Sum_probs=97.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc--------CCeeEeCC--
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI--------SGRVNTKG-- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~--------~G~I~i~g-- 734 (950)
++++|++++|.. .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|. +|+|.++|
T Consensus 2 l~~~nl~~~~~~---------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVARRH---------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEECC---------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEE
Confidence 678999999853 46999999999999999999999999999999999999998 99999987
Q ss_pred -----------eEEEEeccCc-CCCccHHHHHhcCCC-C-------Ch---hHHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 -----------SIAFVPQQAW-IQNATLRDNIVFGKT-H-------VP---RRYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 -----------~Iayv~Q~pw-L~ngTIreNIlfg~~-~-------d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.++|++|++- ++..|++|||.++.. . .+ ++.+++++.+++ .+..+.
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~ 141 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGR 141 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcC
Confidence 3799999975 678999999988631 1 11 122333333333 344566
Q ss_pred CCCCCCHHHhhcccHH
Q psy16196 792 KGINLSGGQKQRVKWQ 807 (950)
Q Consensus 792 ~G~~LSGGQKQRI~~~ 807 (950)
....|||||||||...
T Consensus 142 ~~~~LSgG~~qrv~la 157 (272)
T PRK13547 142 DVTTLSGGELARVQFA 157 (272)
T ss_pred CcccCCHHHHHHHHHH
Confidence 7789999999999554
No 235
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.5e-19 Score=178.66 Aligned_cols=125 Identities=26% Similarity=0.421 Sum_probs=100.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|.++.|.... ...++|+||||+|.+||..+|||++|||||||.++|+|..+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~-----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK-----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc-----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc
Confidence 488999999997521 112699999999999999999999999999999999999999999999988
Q ss_pred -----eEEEEeccCcC---CCccHHHHHhcC-----CCCChhHHHHHHHHhcCCc-hhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 -----SIAFVPQQAWI---QNATLRDNIVFG-----KTHVPRRYNKVIDACALTP-DFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 -----~Iayv~Q~pwL---~ngTIreNIlfg-----~~~d~~~y~~Vi~ac~L~~-Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|-+|+|+|.= ..-||++-|.=+ .+..+++-.++++..+|.+ .++..|+ .|||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ 146 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQ 146 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhH
Confidence 48999999873 455777766432 2222345677888888864 4667774 699999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 147 ~QRi 150 (252)
T COG1124 147 RQRI 150 (252)
T ss_pred HHHH
Confidence 9999
No 236
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.8e-19 Score=180.98 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=75.6
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++++|+||++++|+.++|+||+|||||||+++|.|++++++|+|.++|
T Consensus 1 i~~~~l~~~~~~---------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ---------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC---------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhH
Confidence 468899999953 4699999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcC
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFG 757 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg 757 (950)
.++|++|+|.++. .|++||+.+.
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 3899999999885 5999999764
No 237
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.2e-19 Score=189.52 Aligned_cols=125 Identities=23% Similarity=0.496 Sum_probs=96.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+. .++|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK---------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC---------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHH
Confidence 4889999999953 4799999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCCc-cHHHHHhcCCCC-ChhHHH-HHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNA-TLRDNIVFGKTH-VPRRYN-KVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ng-TIreNIlfg~~~-d~~~y~-~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|++-+|.+ |++|||.++..+ +.+.++ ++.++. +.++..+++ .......||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l------~~~~~l~~~-~~~~~~~LS~G~~qrl 146 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY------ELFPRLHER-RIQRAGTMSGGEQQML 146 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHH------HHHHHHHHH-HhCchhhCCHHHHHHH
Confidence 38999999998874 999999886432 212222 222221 122111111 2345678999999999
No 238
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.2e-19 Score=194.37 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=97.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-----ccCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-----~~~G~I~i~g--- 734 (950)
..++++|+++.|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|..+ |++|+|.++|
T Consensus 38 ~~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i 108 (286)
T PRK14275 38 PHVVAKNFSIYYGE---------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108 (286)
T ss_pred eEEEEeeeEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEh
Confidence 35899999999963 369999999999999999999999999999999999854 4899998865
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCCC----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTH----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~~----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|+|.+++.|++|||.++... +++ +..++++..++.+.+. .....+..
T Consensus 109 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 181 (286)
T PRK14275 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNAL 181 (286)
T ss_pred hhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChh
Confidence 48999999999999999999986421 111 1223333334432221 12356678
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
.|||||||||
T Consensus 182 ~LSgGq~qrv 191 (286)
T PRK14275 182 GLSGGQQQRL 191 (286)
T ss_pred hCCHHHHHHH
Confidence 9999999999
No 239
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.78 E-value=4.7e-19 Score=192.01 Aligned_cols=121 Identities=24% Similarity=0.411 Sum_probs=95.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG------ 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g------ 734 (950)
.++++|+++.|+. .++|+|+||++++||+++|+||+|||||||+++|.|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTFNQ---------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEeCC---------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccc
Confidence 5889999999953 46999999999999999999999999999999999999886 49998776
Q ss_pred ------------eEEEEeccCcCCC-ccHHHHHhcCCCC------------Ch---hHHHHHHHHhcCCchhhhCCCCCc
Q psy16196 735 ------------SIAFVPQQAWIQN-ATLRDNIVFGKTH------------VP---RRYNKVIDACALTPDFEMLPAGDS 786 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~n-gTIreNIlfg~~~------------d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~ 786 (950)
.++|++|++.++. .|++|||.++... .+ ++.+++++..++.+.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------- 145 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF--------- 145 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH---------
Confidence 3799999998887 5999999876320 11 123334444444322
Q ss_pred ccccCCCCCCCHHHhhcc
Q psy16196 787 TEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 787 T~IGe~G~~LSGGQKQRI 804 (950)
...+...|||||||||
T Consensus 146 --~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 146 --AHQRVSTLSGGQQQRV 161 (262)
T ss_pred --HhCCccccCHHHHHHH
Confidence 2335568999999999
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=3.8e-19 Score=183.54 Aligned_cols=91 Identities=34% Similarity=0.543 Sum_probs=78.5
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeCC-------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTKG------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~g------- 734 (950)
.++++|+++.|+.... ..+.++|+|+||++++|+.++|+||+|||||||+++|.|++ +|.+|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~---~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPS---KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCC---cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHh
Confidence 4889999999964100 01257999999999999999999999999999999999999 99999999876
Q ss_pred ---eEEEEeccCcCCC-ccHHHHHhcC
Q psy16196 735 ---SIAFVPQQAWIQN-ATLRDNIVFG 757 (950)
Q Consensus 735 ---~Iayv~Q~pwL~n-gTIreNIlfg 757 (950)
.++||+|++.++. .|++|||.++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~ 106 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA 106 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH
Confidence 4899999999886 5999999764
No 241
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.78 E-value=4.2e-19 Score=197.92 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=97.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..|+++|+++.|++ ..+|+||||+|++|+.++++||+|||||||+++|+|+++|++|+|.++|
T Consensus 40 ~~i~i~nl~k~y~~---------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 40 VAIDLAGVSKSYGD---------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110 (340)
T ss_pred eeEEEEEEEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH
Confidence 36999999999964 4699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcCC-CccHHHHHhcC-CCC--Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ----SIAFVPQQAWIQ-NATLRDNIVFG-KTH--VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ----~Iayv~Q~pwL~-ngTIreNIlfg-~~~--d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
.|+||+|++.++ +.|++||+.+. .-+ +. ++.+++++.++| ++..++.+ .+|||||||
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~----~~LS~G~kq 179 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARV----SDLSGGMKR 179 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCCh----hhCCHHHHH
Confidence 499999999885 67999999853 211 21 223344444444 33333433 479999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
|+
T Consensus 180 rv 181 (340)
T PRK13536 180 RL 181 (340)
T ss_pred HH
Confidence 99
No 242
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.78 E-value=1.7e-19 Score=217.89 Aligned_cols=119 Identities=29% Similarity=0.374 Sum_probs=93.9
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC----------eEEEEeccCcCCC-ccH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG----------SIAFVPQQAWIQN-ATL 750 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g----------~Iayv~Q~pwL~n-gTI 750 (950)
++++|+|+|+++++||+++|+||+||||||||++|.|+.++. +|+|.++| .++||+|++++++ .||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 568999999999999999999999999999999999999874 79999998 3699999999985 599
Q ss_pred HHHHhcCCCCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCC--CCCCCHHHhhcc
Q psy16196 751 RDNIVFGKTHVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEK--GINLSGGQKQRV 804 (950)
Q Consensus 751 reNIlfg~~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~--G~~LSGGQKQRI 804 (950)
||||.|+..... .+.++..+++.+-+++ .|++..+|.||+. +..|||||||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQAL-GLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CchhcCcCccCCCCCCCCcCcchhhHH
Confidence 999998754321 1122222233222222 2455678999985 588999999999
No 243
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.7e-19 Score=198.00 Aligned_cols=117 Identities=31% Similarity=0.497 Sum_probs=96.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
+++ |++++|.. . .+ |+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---------~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGD---------L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCC---------E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 345 78888853 1 23 99999999999999999999999999999999999999998765
Q ss_pred -------eEEEEeccCcCCC-ccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -------SIAFVPQQAWIQN-ATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -------~Iayv~Q~pwL~n-gTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|++.+|. .|++|||.|+.. .++++.+++++.++|.+.++..| .+|||||||||
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRv 137 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRV 137 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHH
Confidence 3899999999985 699999999743 33456677788877765555544 58999999999
No 244
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=3.8e-19 Score=196.15 Aligned_cols=120 Identities=25% Similarity=0.401 Sum_probs=97.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|.+ ..+|+|+||+|++|+.++|+||+|||||||+++|+|.++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 3 IRVSSLTKLYGT---------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEECC---------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHH
Confidence 789999999953 4699999999999999999999999999999999999999999999977
Q ss_pred --eEEEEeccCcCCCc-cHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQNA-TLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~ng-TIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++||+|+|.++.. |++||+.+... .+ .++.+++++..+|.+. ...+..+||||||||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRV 142 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHH
Confidence 49999999999865 99999975321 11 1234445555555433 2345678999999999
No 245
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=190.01 Aligned_cols=126 Identities=22% Similarity=0.366 Sum_probs=100.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g--- 734 (950)
..++++|+++.|+. .++|+|+||+|++||.++|+||+|||||||+++|.|.+++ .+|+|.++|
T Consensus 19 ~~l~~~nl~~~~~~---------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 19 SVFEVEGVKVFYGG---------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred ceEEEeeEEEEeCC---------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 46899999999963 4699999999999999999999999999999999999863 589998765
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCCC---CC---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGKT---HV---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~~---~d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+|++|++.+++.|++|||.++.. +. ++..++.++.+++.+.+. .........|
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTAL 162 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccC
Confidence 4899999999999999999988642 11 122234455555543332 2345667899
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 163 SgGq~qrv 170 (274)
T PRK14265 163 SGGQQQRL 170 (274)
T ss_pred CHHHHHHH
Confidence 99999999
No 246
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.4e-19 Score=189.47 Aligned_cols=125 Identities=23% Similarity=0.406 Sum_probs=97.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc--c---cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--K---ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~--~---~~G~I~i~g---- 734 (950)
.++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|..+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGK---------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECC---------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence 5899999999963 469999999999999999999999999999999999865 4 589998865
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCC----CChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKT----HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+||+|++.+++.|++|||.++.. ..++ +..+.++.+++...+ .........+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~ 148 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALS 148 (252)
T ss_pred cccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCccc
Confidence 3899999999999999999987521 1111 223334444443222 2234566789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 149 LS~Gq~qrv 157 (252)
T PRK14255 149 LSGGQQQRV 157 (252)
T ss_pred CCHHHHHHH
Confidence 999999999
No 247
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.77 E-value=3.7e-19 Score=199.78 Aligned_cols=109 Identities=28% Similarity=0.379 Sum_probs=89.1
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------------------eEEEEeccC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------------------SIAFVPQQA 743 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------------------~Iayv~Q~p 743 (950)
...+|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| +|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 34689999999999999999999999999999999999999999999976 399999999
Q ss_pred cCCC-ccHHHHHhcCCCC---C-h---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 744 WIQN-ATLRDNIVFGKTH---V-P---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 744 wL~n-gTIreNIlfg~~~---d-~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.+++ .|++|||.++..+ + + ++.+++++..+|.+..+.. ..+|||||||||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV 173 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRV 173 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHH
Confidence 9997 7999999987421 2 2 2334455555665444333 347999999999
No 248
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.77 E-value=9.1e-19 Score=185.31 Aligned_cols=128 Identities=26% Similarity=0.365 Sum_probs=94.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC--C--------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--G-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~--g-------- 734 (950)
++++|+++.|+...++ ....++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~--~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG--GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCC--CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc
Confidence 6789999999631000 012469999999999999999999999999999999999999999999886 3
Q ss_pred -----------eEEEEeccCcCCC-ccHHHHHhcCC---CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQN-ATLRDNIVFGK---THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~n-gTIreNIlfg~---~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++|++|+|.++. .|++|||.++. ..+. ++.+++++..++.++.. ...+.+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCccc
Confidence 3899999998765 59999997631 1221 12233333333332221 124678
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 150 LS~G~~qrl 158 (224)
T TIGR02324 150 FSGGEQQRV 158 (224)
T ss_pred CCHHHHHHH
Confidence 999999999
No 249
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=4e-19 Score=178.99 Aligned_cols=127 Identities=28% Similarity=0.469 Sum_probs=101.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++..|.. ..+|++|||++++||+++++||.|+||||||++|.|..++.+|+|..+|
T Consensus 3 mL~v~~l~~~YG~---------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK---------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc---------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHH
Confidence 4688999999964 5799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCCCChh-HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKTHVPR-RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~~d~~-~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||||.-.+|. -||+||+..|.....+ ..++. .+++-.+.||. ....-..+|.+|||||+|-+
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQML 145 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQML 145 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHH
Confidence 5999999999985 6999999987432221 11110 02223455553 33455778999999999987
No 250
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1e-18 Score=189.14 Aligned_cols=125 Identities=22% Similarity=0.417 Sum_probs=99.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-----CCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-----SGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-----~G~I~i~g---- 734 (950)
.++++|+++.|+. .++|+|+||++++|+.++|+|++|||||||+++|.|+++++ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYDT---------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeCC---------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhh
Confidence 6899999999953 36999999999999999999999999999999999999985 78887654
Q ss_pred -----------eEEEEeccCcCCCccHHHHHhcCCC---C-Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNATLRDNIVFGKT---H-VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ngTIreNIlfg~~---~-d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.++|++|++.++..|++||+.++.. . .. ++.+++++.+++.+++. ...+..+..
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 150 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALD 150 (261)
T ss_pred ccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCccc
Confidence 3999999999999999999987521 1 11 22344555555544333 234567789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
||||||||+
T Consensus 151 LSgGq~qrv 159 (261)
T PRK14258 151 LSGGQQQRL 159 (261)
T ss_pred CCHHHHHHH
Confidence 999999999
No 251
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.77 E-value=1.1e-18 Score=189.30 Aligned_cols=130 Identities=27% Similarity=0.382 Sum_probs=95.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+.....+...+.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631000000135799999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCc--C-CCccHHHHHhcCC----CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 ------SIAFVPQQAW--I-QNATLRDNIVFGK----THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 ------~Iayv~Q~pw--L-~ngTIreNIlfg~----~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|+|++|+|. + .+.|++|||.++. .+++ ++.+++++..++.+ .....++.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 3999999983 3 3579999996532 1222 12233334433321 12345667899
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
|||||||
T Consensus 153 gGe~qrv 159 (265)
T TIGR02769 153 GGQLQRI 159 (265)
T ss_pred HHHHHHH
Confidence 9999999
No 252
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.77 E-value=8.2e-19 Score=188.16 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=74.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeCC--------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTKG-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~g-------- 734 (950)
++++|++++|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|.. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVED---------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEECC---------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH
Confidence 468899999953 46999999999999999999999999999999999994 79999999876
Q ss_pred ------eEEEEeccCcCCCc-cHHHHHhcC
Q psy16196 735 ------SIAFVPQQAWIQNA-TLRDNIVFG 757 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ng-TIreNIlfg 757 (950)
.++|++|+|.++.+ |++||+.+.
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 28999999988875 899999764
No 253
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=5.1e-19 Score=171.66 Aligned_cols=125 Identities=23% Similarity=0.389 Sum_probs=94.3
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------eE
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SI 736 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------~I 736 (950)
..+++.+.+|+. ...++|+|+|++|.+|++++++||+||||||||+.+.|+++|..|+|.++| .=
T Consensus 4 l~~~~~sl~y~g-------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaer 76 (259)
T COG4525 4 LNVSHLSLSYEG-------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER 76 (259)
T ss_pred eehhheEEecCC-------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccc
Confidence 345677888875 235699999999999999999999999999999999999999999999987 36
Q ss_pred EEEeccCcCC-CccHHHHHhcCCCC---Ch-hH---HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 737 AFVPQQAWIQ-NATLRDNIVFGKTH---VP-RR---YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 737 ayv~Q~pwL~-ngTIreNIlfg~~~---d~-~~---y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
|.|.|++-|+ --|+.||+.||-.. ++ +| -.+.+.-.+|++.=.. .-..||||||||+...
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~-----------~i~qLSGGmrQRvGiA 144 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK-----------YIWQLSGGMRQRVGIA 144 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccccc-----------ceEeecchHHHHHHHH
Confidence 9999985543 35999999999542 22 22 2333333444332111 1257999999999543
No 254
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.77 E-value=1.8e-18 Score=186.53 Aligned_cols=123 Identities=24% Similarity=0.354 Sum_probs=99.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc----cCCeeEeCC-----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK----ISGRVNTKG----- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~----~~G~I~i~g----- 734 (950)
.++++|++++| + .++|+|+||+|++|++++|+||+|||||||+++|.|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA-A---------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe-c---------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc
Confidence 48899999999 3 2689999999999999999999999999999999999999 999999876
Q ss_pred ------eEEEEeccCc-CCC--ccHHHHHhc-----CCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAW-IQN--ATLRDNIVF-----GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pw-L~n--gTIreNIlf-----g~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.|+||+|++- .|+ .|+.+|+.+ +.+.++++.+++++.+++.+. ++.++.....|||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGM 145 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHH
Confidence 4999999984 443 688888754 333334556667777666431 234567778999999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 146 ~qrv 149 (254)
T PRK10418 146 LQRM 149 (254)
T ss_pred HHHH
Confidence 9999
No 255
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1e-18 Score=188.90 Aligned_cols=125 Identities=23% Similarity=0.387 Sum_probs=97.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|++++|+. .++|+|+||+|++|+.++|+||+|||||||+++|.|.++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYGS---------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEECC---------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence 4889999999963 3699999999999999999999999999999999999974 699999865
Q ss_pred -----------eEEEEeccCcCCC-ccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 -----------SIAFVPQQAWIQN-ATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~n-gTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|++-++. .|++||+.++.. .+. ++.+++++..++.+.+. ........
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 147 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGG 147 (258)
T ss_pred ccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcc
Confidence 3899999998886 699999987531 111 12234444445432221 23355677
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 148 ~LS~G~~qrv 157 (258)
T PRK14241 148 GLSGGQQQRL 157 (258)
T ss_pred cCCHHHHHHH
Confidence 8999999999
No 256
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.77 E-value=1.2e-18 Score=193.73 Aligned_cols=132 Identities=22% Similarity=0.339 Sum_probs=97.9
Q ss_pred CcEEEEeeEEEecCCCCC----CCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----
Q psy16196 663 DPLVIENGTFTWERNTEG----EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~----~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---- 734 (950)
..++++|++.+|...... .......+++||||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 468999999999631100 000124689999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEeccCc--CC-CccHHHHHhcCC-----CCChh----HHHHHHHHhcCCchhhhCCCCCccccc
Q psy16196 735 ------------SIAFVPQQAW--IQ-NATLRDNIVFGK-----THVPR----RYNKVIDACALTPDFEMLPAGDSTEIG 790 (950)
Q Consensus 735 ------------~Iayv~Q~pw--L~-ngTIreNIlfg~-----~~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IG 790 (950)
+|+||+|+|. ++ ..||+|||.++. ..+++ +.+++++..+|.++ ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 4999999983 55 689999997531 12322 22344555555322 123
Q ss_pred CCCCCCCHHHhhcc
Q psy16196 791 EKGINLSGGQKQRV 804 (950)
Q Consensus 791 e~G~~LSGGQKQRI 804 (950)
.....|||||||||
T Consensus 157 ~~p~~LSgG~~QRv 170 (331)
T PRK15079 157 RYPHEFSGGQCQRI 170 (331)
T ss_pred CCcccCCHHHHHHH
Confidence 44568999999999
No 257
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-18 Score=187.64 Aligned_cols=125 Identities=25% Similarity=0.382 Sum_probs=94.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-----CCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-----SGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-----~G~I~i~g---- 734 (950)
.++++|++++|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD---------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC---------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 4789999999963 46999999999999999999999999999999999999864 89998865
Q ss_pred -----------eEEEEeccCcCCC-ccHHHHHhcCCCC----ChhH----HHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 -----------SIAFVPQQAWIQN-ATLRDNIVFGKTH----VPRR----YNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~n-gTIreNIlfg~~~----d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+|++|++.++. .|++||+.++... .++. .++.++..++.+.+ ++. ......
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~ 147 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDR----LKTPAT 147 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhh----hcCCcc
Confidence 4899999999888 5999999865321 1211 12222333332222 222 234467
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 148 ~LS~G~~qrv 157 (252)
T PRK14272 148 GLSGGQQQRL 157 (252)
T ss_pred cCCHHHHHHH
Confidence 8999999999
No 258
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.1e-18 Score=179.74 Aligned_cols=89 Identities=33% Similarity=0.466 Sum_probs=77.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeCC-------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTKG------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~g------- 734 (950)
.++++|+++.|+... .+.++|+|+||++++|++++|+||+|||||||+++|.|.+ ++++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG-----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNF 77 (192)
T ss_pred EEEEeeeEEEecCCC-----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHh
Confidence 478999999996410 1257999999999999999999999999999999999986 48999999876
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcC
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFG 757 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg 757 (950)
.++|++|++-++. .|++||+.++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFS 103 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHH
Confidence 5899999998877 4999999864
No 259
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.5e-18 Score=185.34 Aligned_cols=126 Identities=23% Similarity=0.362 Sum_probs=97.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.+.++|++++|+. +++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 9 DVFNISRLYLYIND---------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred hheeeeeEEEecCC---------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcc
Confidence 46899999999953 5699999999999999999999999999999999999999997766543
Q ss_pred -----------eEEEEeccCcCCCc-cHHHHHhcCCC---C-ChhHH-HHH---HHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 -----------SIAFVPQQAWIQNA-TLRDNIVFGKT---H-VPRRY-NKV---IDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 -----------~Iayv~Q~pwL~ng-TIreNIlfg~~---~-d~~~y-~~V---i~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.++|++|+|-++.+ |++|||.++.. + +++.. +++ ++..++.+.+ .....+.+.
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~ 152 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPAS 152 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcc
Confidence 48999999999875 99999997632 1 22222 223 3333343222 123455778
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
.||||||||+
T Consensus 153 ~LS~G~~qrl 162 (257)
T PRK14246 153 QLSGGQQQRL 162 (257)
T ss_pred cCCHHHHHHH
Confidence 8999999999
No 260
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.75 E-value=4.8e-18 Score=183.69 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=94.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP---------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC---------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc
Confidence 5899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred -------------eEEEEeccCc---CCCccHHHHHhcC-----CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 -------------SIAFVPQQAW---IQNATLRDNIVFG-----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 -------------~Iayv~Q~pw---L~ngTIreNIlfg-----~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
.++|++|++. ..+.|+++||.+. ....++..+++.+ .++.++-+ .+....++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~-~~~~~~~~ 149 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGD------WLERVEID-AARIDDLP 149 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHH------HHHHcCCC-hhHHhCCC
Confidence 2899999984 2346899998642 1111112222222 22333221 13456778
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
.+|||||||||
T Consensus 150 ~~LS~Gq~qrl 160 (258)
T PRK11701 150 TTFSGGMQQRL 160 (258)
T ss_pred ccCCHHHHHHH
Confidence 89999999999
No 261
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.75 E-value=1.4e-18 Score=191.84 Aligned_cols=108 Identities=27% Similarity=0.415 Sum_probs=88.7
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------------eEEEEeccCcCCCc-cHHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------SIAFVPQQAWIQNA-TLRD 752 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------------~Iayv~Q~pwL~ng-TIre 752 (950)
.++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++|+|.++| .|+||+|++.++.. |++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999987 49999999988865 9999
Q ss_pred HHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 753 NIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 753 NIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
||.+... .+ .++.+++++.++|.+..+ .+..+||||||||+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 133 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRL 133 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHH
Confidence 9987421 11 234556666666654332 23468999999999
No 262
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.75 E-value=4.1e-18 Score=184.99 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=96.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|..........+.++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521000000124799999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCc--CC-CccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ----SIAFVPQQAW--IQ-NATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ----~Iayv~Q~pw--L~-ngTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.|+||+|+|- ++ +-|+.+|+.++.. .+. ++.+++++.+++.++.. .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 4899999984 33 4589999875321 121 23345566666632221 1233589999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 154 ~~qrv 158 (267)
T PRK15112 154 QKQRL 158 (267)
T ss_pred HHHHH
Confidence 99999
No 263
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.75 E-value=4.5e-18 Score=201.62 Aligned_cols=121 Identities=24% Similarity=0.401 Sum_probs=99.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 11 ~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG---------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC---------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 5899999999963 4699999999999999999999999999999999999999999999886
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCCCC---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKTHV---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~~d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++.++. .|++||+.++.... +++.+++++..+|.++.+ .+..+|||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 149 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIV 149 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHH
Confidence 3899999998776 59999999875422 234455555555543322 23457999999999
No 264
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3e-18 Score=179.95 Aligned_cols=113 Identities=27% Similarity=0.386 Sum_probs=90.0
Q ss_pred eeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------------
Q psy16196 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734 (950)
Q Consensus 669 ~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------- 734 (950)
|++++|++ ..+ |+||+|++ ++++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~~~---------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPD---------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCC---------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhh
Confidence 77888864 223 99999999 99999999999999999999999999999998865
Q ss_pred ---eEEEEeccCcCCC-ccHHHHHhcCCCC-C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQN-ATLRDNIVFGKTH-V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~n-gTIreNIlfg~~~-d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++|++|+++++. .|++|||.++... . +++.++.++..++. .....+..+||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 140 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-----------HLLNRYPAQLSGGEKQRV 140 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-----------hHhhcCcccCCHHHHHHH
Confidence 3899999999985 6999999876432 1 22344445554443 234456679999999999
No 265
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.75 E-value=3.3e-18 Score=192.65 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=90.6
Q ss_pred eeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------------
Q psy16196 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734 (950)
Q Consensus 669 ~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------- 734 (950)
|+++.|++ . .+ |+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~~~---------~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGD---------F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECC---------E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccch
Confidence 67777753 2 35 99999999999999999999999999999999999999998865
Q ss_pred ---eEEEEeccCcCCC-ccHHHHHhcCCCC-C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQN-ATLRDNIVFGKTH-V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~n-gTIreNIlfg~~~-d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|++.+|. .|++|||.|+... + +++.+++++..+|.+..+ .+..+|||||||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRv 140 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRV 140 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHH
Confidence 3899999999986 5999999987432 1 123455555555544333 34468999999999
No 266
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.4e-18 Score=200.74 Aligned_cols=121 Identities=25% Similarity=0.326 Sum_probs=96.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ .++|+|+||++++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG---------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC---------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH
Confidence 4889999999953 4699999999999999999999999999999999999999999999875
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCC------CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKT------HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~------~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+|++|++.++. .|++||+.++.. .+. ++.+++++.++|.+.. ..+..+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----------DTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----------CCchhhCCH
Confidence 4999999998876 499999998632 111 2334445555443221 223458999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 144 Gq~qrv 149 (501)
T PRK11288 144 GQRQMV 149 (501)
T ss_pred HHHHHH
Confidence 999999
No 267
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=5.4e-18 Score=185.25 Aligned_cols=122 Identities=28% Similarity=0.479 Sum_probs=102.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++..|.. +..+|+||||+|++|++++++||+|||||||+++|+|.+.|++|+|.++|
T Consensus 4 ~i~~~~l~k~~~~--------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGG--------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCC--------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHH
Confidence 4788999999962 36799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcC-CCccHHHHHhcC-----CC--CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWI-QNATLRDNIVFG-----KT--HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL-~ngTIreNIlfg-----~~--~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
+|||+||+|-+ .+-|++||+.|. .+ .++++.+++++.-+|.++- ..+-..||||||||
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqr 144 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQR 144 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHH
Confidence 59999999975 466999999873 22 2345677788887776521 23456899999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
+
T Consensus 145 l 145 (293)
T COG1131 145 L 145 (293)
T ss_pred H
Confidence 9
No 268
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.74 E-value=5.5e-18 Score=200.68 Aligned_cols=121 Identities=24% Similarity=0.306 Sum_probs=95.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG---------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC---------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 4889999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCCC-------Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKTH-------VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~~-------d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|+|++|++-++. -|++|||.++... +.+ +.+++++.+++.+.. ...-.+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCC
Confidence 3899999987765 5999999987431 221 223344444443222 22345799
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
|||||||
T Consensus 144 gG~~qrv 150 (501)
T PRK10762 144 IGEQQMV 150 (501)
T ss_pred HHHHHHH
Confidence 9999999
No 269
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.74 E-value=5.6e-18 Score=183.90 Aligned_cols=131 Identities=26% Similarity=0.363 Sum_probs=96.5
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+.....+...++++++|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999631000000135799999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccCc--C-CCccHHHHHhcCC----CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 -------SIAFVPQQAW--I-QNATLRDNIVFGK----THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 -------~Iayv~Q~pw--L-~ngTIreNIlfg~----~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.++|++|++. + .+.|++||+.+.. ..+. ++.+++++.+++..+ ....+...|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 3999999983 3 3579999996531 1121 123444444433211 234567789
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|||||||+
T Consensus 153 S~Ge~qrl 160 (268)
T PRK10419 153 SGGQLQRV 160 (268)
T ss_pred ChHHHHHH
Confidence 99999999
No 270
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=2.8e-18 Score=205.35 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=78.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
.++++|++++|++ +.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+++ .|+||+|
T Consensus 4 ~i~~~nls~~~~~--------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPP--------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCC--------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEec
Confidence 4889999999963 34799999999999999999999999999999999999999999999874 6999999
Q ss_pred cCcCCC-ccHHHHHhcC
Q psy16196 742 QAWIQN-ATLRDNIVFG 757 (950)
Q Consensus 742 ~pwL~n-gTIreNIlfg 757 (950)
+|+++. .|++|||.++
T Consensus 76 ~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEG 92 (552)
T ss_pred cCCCCCCCcHHHHHHHh
Confidence 999875 5999999875
No 271
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=4.1e-18 Score=182.03 Aligned_cols=108 Identities=23% Similarity=0.356 Sum_probs=87.6
Q ss_pred CCcccceeEEee-----CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-eEEEEeccCc-CCCccHHHHHhcCC
Q psy16196 686 PPTLQNINMRVR-----EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQAW-IQNATLRDNIVFGK 758 (950)
Q Consensus 686 ~~vL~~Inl~i~-----~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-~Iayv~Q~pw-L~ngTIreNIlfg~ 758 (950)
...++|++|+++ +|++++|+||+|||||||+++|.|+++|++|+|.++| +|+|++|++. .++.|++||+.+..
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 347888888886 7999999999999999999999999999999999998 8999999987 57899999997643
Q ss_pred C-C--ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 759 T-H--VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 759 ~-~--d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
. . ++.+.+++++.+++.+.+ ..+..+|||||||||
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv 124 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRV 124 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHH
Confidence 2 1 123456677766664332 234568999999999
No 272
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=4.6e-18 Score=173.69 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=73.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++| +|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~-------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG-------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe-------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHH
Confidence 48889998865 69999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccC----cCCCccHHHHHhcC
Q psy16196 735 -----SIAFVPQQA----WIQNATLRDNIVFG 757 (950)
Q Consensus 735 -----~Iayv~Q~p----wL~ngTIreNIlfg 757 (950)
.++||+|++ ..++.|++||+.++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 489999985 46678999999875
No 273
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4e-18 Score=167.96 Aligned_cols=125 Identities=31% Similarity=0.525 Sum_probs=102.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+.+|++++-. ++.+|++++|++++||.++|+||.|+||||||++|.||+.|.+|++.++|
T Consensus 2 i~a~nls~~~~---------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLA---------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEee---------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH
Confidence 56778887754 46799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcC-CCccHHHHHhcCCC-C----ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 735 ---SIAFVPQQAWI-QNATLRDNIVFGKT-H----VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 735 ---~Iayv~Q~pwL-~ngTIreNIlfg~~-~----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
+-|..||+.-| |.-|++|-|.+|+- + ++++.+++.++|-..-|+..|.+.|-+ .||||+||||.
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~-------~LSGGEqQRVq 145 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR-------TLSGGEQQRVQ 145 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchh-------hcCchHHHHHH
Confidence 47899998765 88999999999852 2 223455556665555677666655544 69999999993
No 274
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.7e-18 Score=187.13 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=95.2
Q ss_pred cEEEEeeEEEecCCCCCC-CCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 664 PLVIENGTFTWERNTEGE-GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~-~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
.++++|+++.|....... ......+|+||||+|++||+++|||++|||||||+++|+|++++++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996311000 00124689999999999999999999999999999999999999999998876
Q ss_pred --------eEEEEeccCc--CC-CccHHHHHhcC----CCCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 --------SIAFVPQQAW--IQ-NATLRDNIVFG----KTHVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 --------~Iayv~Q~pw--L~-ngTIreNIlfg----~~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
+|+||+|+|. +. .-||.+|+..+ ...+. ++-.++++.++|.++ +. ......
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~----~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HY----DRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------Hh----cCCCcc
Confidence 4999999983 33 35999998632 11122 223444555555322 11 223468
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 155 LSgGq~QRv 163 (327)
T PRK11308 155 FSGGQRQRI 163 (327)
T ss_pred CCHHHHHHH
Confidence 999999999
No 275
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=7.2e-18 Score=201.81 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=78.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
.++++|++++|+. +.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+++ +|+||+|
T Consensus 6 ~l~i~~l~~~y~~--------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q 77 (556)
T PRK11819 6 IYTMNRVSKVVPP--------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQ 77 (556)
T ss_pred EEEEeeEEEEeCC--------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEec
Confidence 5899999999962 35799999999999999999999999999999999999999999999863 7999999
Q ss_pred cCcCCCc-cHHHHHhcC
Q psy16196 742 QAWIQNA-TLRDNIVFG 757 (950)
Q Consensus 742 ~pwL~ng-TIreNIlfg 757 (950)
+|++++. |++|||.++
T Consensus 78 ~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 78 EPQLDPEKTVRENVEEG 94 (556)
T ss_pred CCCCCCCCcHHHHHHHh
Confidence 9999865 999999876
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.8e-18 Score=199.63 Aligned_cols=121 Identities=30% Similarity=0.398 Sum_probs=95.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc--cCCeeEeCC-------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK--ISGRVNTKG------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~--~~G~I~i~g------- 734 (950)
.++++|++++|++ .++|+||||+|++|++++|+||+|||||||+++|.|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG---------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC---------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC
Confidence 4899999999953 4699999999999999999999999999999999999986 899999876
Q ss_pred -------eEEEEeccCcCCC-ccHHHHHhcCCCC------Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 -------SIAFVPQQAWIQN-ATLRDNIVFGKTH------VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 -------~Iayv~Q~pwL~n-gTIreNIlfg~~~------d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+||+|++.++. .|++|||.++... +.+ +.+++++..++.++ ...+..+|
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~L 144 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNL 144 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhC
Confidence 3899999998775 5999999987431 211 22333333333222 22344689
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 145 SgGqkqrv 152 (506)
T PRK13549 145 GLGQQQLV 152 (506)
T ss_pred CHHHHHHH
Confidence 99999999
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.2e-18 Score=200.81 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=95.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP---------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC---------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHH
Confidence 4899999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCC-----C-----Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKT-----H-----VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~-----~-----d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+||+|++-++. .|++||+.++.. + +. ++.+++++.++|.+.. ..+-.
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----------DEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------ccchh
Confidence 3899999987766 599999987632 0 11 1223344444443222 22335
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 145 ~LSgG~~qrv 154 (510)
T PRK09700 145 NLSISHKQML 154 (510)
T ss_pred hCCHHHHHHH
Confidence 8999999999
No 278
>KOG0064|consensus
Probab=99.73 E-value=4.1e-15 Score=163.65 Aligned_cols=134 Identities=24% Similarity=0.360 Sum_probs=106.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC--CeEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--GSIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~--g~Iayv~ 740 (950)
..|.++|+-.--+. .+.+...+||+|++|...-|+||.|||||||.+.|-|.+|...|...+. .+|-|.|
T Consensus 480 ~gI~lenIpvItP~--------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIP 551 (728)
T KOG0064|consen 480 NGIILENIPVITPA--------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIP 551 (728)
T ss_pred cceEEecCceeccC--------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEecc
Confidence 46888888765443 4568899999999999999999999999999999999999999998876 4799999
Q ss_pred ccCcCCCccHHHHHhcCC--------CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 741 QQAWIQNATLRDNIVFGK--------THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 741 Q~pwL~ngTIreNIlfg~--------~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
|.|+.--||+||-|.+.. .+.++...++++...|+. |.+-..|.+.+-. =---||||+|||+..
T Consensus 552 QRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~d-Wkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 552 QRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAVRD-WKDVLSGGEKQRMGM 623 (728)
T ss_pred CCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhhcc-HHhhccchHHHHHHH
Confidence 999999999999999864 344566777887777754 3333444443322 223599999999943
No 279
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.73 E-value=9.3e-18 Score=181.08 Aligned_cols=130 Identities=22% Similarity=0.329 Sum_probs=98.6
Q ss_pred cEEEEeeEEEecCCCC-----------CCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 664 PLVIENGTFTWERNTE-----------GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~-----------~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
.|+++|++..|..... .......++|+|+||+|++|+.++|+||+|||||||+++|+|+++|.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5888888887764211 00113457999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCcCCC-ccHHHHHhcCC---CCChhHH----HHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 733 KGSIAFVPQQAWIQN-ATLRDNIVFGK---THVPRRY----NKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 733 ~g~Iayv~Q~pwL~n-gTIreNIlfg~---~~d~~~y----~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|.++|++|++++.+ .|++|||.++. .++.+.. +++++..++.+. +.....+|||||||||
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAKL 152 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHH
Confidence 999999999998764 69999998642 2232222 223333333332 3345678999999999
No 280
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.1e-17 Score=186.14 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=93.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc----ccCCeeEeCC-----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD----KISGRVNTKG----- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~----~~~G~I~i~g----- 734 (950)
.++++|+++.|.... ....+|+||||+|++||+++|||++|||||||+++|+|+++ +++|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDES-----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCC-----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 378999999996410 11369999999999999999999999999999999999997 4899999887
Q ss_pred ------------eEEEEeccCcC-C--CccHHHHHhc----CCCCC-h---hHHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 ------------SIAFVPQQAWI-Q--NATLRDNIVF----GKTHV-P---RRYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 ------------~Iayv~Q~pwL-~--ngTIreNIlf----g~~~d-~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.|+||+|+|.. + .-|+.+|+.. ....+ + ++-.+.++..+|.+. ......
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~ 149 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDV 149 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 39999999952 2 3467666542 21112 1 223344455555321 122345
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
....|||||||||
T Consensus 150 ~p~~LSgGq~QRv 162 (326)
T PRK11022 150 YPHQLSGGMSQRV 162 (326)
T ss_pred CchhCCHHHHHHH
Confidence 6779999999999
No 281
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=1.6e-17 Score=184.88 Aligned_cols=132 Identities=20% Similarity=0.331 Sum_probs=97.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC-----
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG----- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g----- 734 (950)
..++++|+++.|.... ....+++||||+|++||.++|+|++|||||||+++|+|.+++. +|+|.++|
T Consensus 11 ~~L~i~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecCC-----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc
Confidence 4689999999996310 1246899999999999999999999999999999999999985 99998876
Q ss_pred ------------eEEEEeccCc--C-CCccHHHHHhcC----CCCCh-hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------------SIAFVPQQAW--I-QNATLRDNIVFG----KTHVP-RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------------~Iayv~Q~pw--L-~ngTIreNIlfg----~~~d~-~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.|+||+|+|. + ...|+.+||... ...+. +..+++.+.... + .||++. ..++....
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~---v-gL~~~~-~~~~~~p~ 160 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA---V-KMPEAR-KRMKMYPH 160 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---c-CCCChH-HHhcCCcc
Confidence 4999999983 3 346888887542 12222 222333333221 1 234433 33677788
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
.|||||||||
T Consensus 161 ~LSgG~~QRv 170 (330)
T PRK09473 161 EFSGGMRQRV 170 (330)
T ss_pred cCCHHHHHHH
Confidence 9999999999
No 282
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=7.4e-18 Score=156.59 Aligned_cols=122 Identities=28% Similarity=0.458 Sum_probs=99.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC-------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g------- 734 (950)
..++|++..-+ +...|.|+||+|.+||++-+.||+|||||||++-+.|.+.+. +|++.+++
T Consensus 3 l~l~nvsl~l~---------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 3 LCLKNVSLRLP---------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred eeeeeeeecCC---------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 45678886543 456899999999999999999999999999999999998774 79999876
Q ss_pred ----eEEEEeccCcCCC-ccHHHHHhcCCCCCh---hH---HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ----SIAFVPQQAWIQN-ATLRDNIVFGKTHVP---RR---YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ----~Iayv~Q~pwL~n-gTIreNIlfg~~~d~---~~---y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
+|++..|++|||. -+|-+||+|.-|-+- +| -+.+++..+|+..+.+.|+ +||||||+|
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrAR 142 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRAR 142 (213)
T ss_pred hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHH
Confidence 6999999999995 599999999876532 22 2344555677777777664 799999999
Q ss_pred ccH
Q psy16196 804 VKW 806 (950)
Q Consensus 804 I~~ 806 (950)
|..
T Consensus 143 vaL 145 (213)
T COG4136 143 VAL 145 (213)
T ss_pred HHH
Confidence 943
No 283
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.72 E-value=1e-17 Score=177.81 Aligned_cols=105 Identities=30% Similarity=0.444 Sum_probs=83.9
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe--------EEEEeccCcCCC-ccHHHHHhcCC-
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--------IAFVPQQAWIQN-ATLRDNIVFGK- 758 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~--------Iayv~Q~pwL~n-gTIreNIlfg~- 758 (950)
|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|. .+|++|++-++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999872 589999998886 69999998751
Q ss_pred ----CCChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 759 ----THVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 759 ----~~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
..+++ +.+++++.+++.+..+ .....||||||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 123 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRV 123 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHH
Confidence 12221 2344555555543322 34568999999999
No 284
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.3e-18 Score=169.31 Aligned_cols=120 Identities=31% Similarity=0.506 Sum_probs=94.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
|+++|++.+|. ++.+|+|+|++||+|.+++++||.|+||||||+.+.|.+++++|+|.++|
T Consensus 2 I~i~nv~K~y~---------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYG---------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhC---------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH
Confidence 57789998886 46899999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEeccCcCC-CccHHHHHhcCC-CCCh--------hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHh
Q psy16196 735 ---SIAFVPQQAWIQ-NATLRDNIVFGK-THVP--------RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801 (950)
Q Consensus 735 ---~Iayv~Q~pwL~-ngTIreNIlfg~-~~d~--------~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQK 801 (950)
.++..-|+..+. .-||||=+-||+ ||.+ ...+++++--. ++.|.+.+.. .||||||
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~----L~~l~dryLd-------~LSGGQr 141 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH----LEDLSDRYLD-------ELSGGQR 141 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc----ccchHHHhHH-------hcccchh
Confidence 477788876664 569999999996 5532 22233333333 3333344433 5999999
Q ss_pred hcc
Q psy16196 802 QRV 804 (950)
Q Consensus 802 QRI 804 (950)
||.
T Consensus 142 QRA 144 (252)
T COG4604 142 QRA 144 (252)
T ss_pred hhh
Confidence 997
No 285
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.72 E-value=2.8e-17 Score=177.32 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=93.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|++ ..+|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGG---------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCC---------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccc
Confidence 4889999999963 3589999999999999999999999999999999999999999998864
Q ss_pred -------------eEEEEeccCc--C-CCccHHHHHhcC-----CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 -------------SIAFVPQQAW--I-QNATLRDNIVFG-----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 -------------~Iayv~Q~pw--L-~ngTIreNIlfg-----~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
.|+|++|++- + +..|+.+||.+. .....++.+++. +-++.+.-+ .+......
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~l~l~-~~~~~~~~ 146 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAH------DWLEEVEID-PTRIDDLP 146 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHH------HHHHHcCCC-hhhhhcCc
Confidence 2799999984 2 456889998642 111111112221 223333211 23456677
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
.+|||||||||
T Consensus 147 ~~LSgG~~qrv 157 (253)
T TIGR02323 147 RAFSGGMQQRL 157 (253)
T ss_pred hhcCHHHHHHH
Confidence 89999999999
No 286
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.72 E-value=2.9e-17 Score=177.15 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=75.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC--CcccCCeeEeCC-------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKG------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe--~~~~~G~I~i~g------- 734 (950)
.++++|+++.|+. .++|+|+||+|++|++++|+|++|||||||+++|.|. ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE---------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC---------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC
Confidence 5899999999963 3699999999999999999999999999999999998 689999998875
Q ss_pred -------eEEEEeccCcCCCc-cHHHHHhcC
Q psy16196 735 -------SIAFVPQQAWIQNA-TLRDNIVFG 757 (950)
Q Consensus 735 -------~Iayv~Q~pwL~ng-TIreNIlfg 757 (950)
.++|++|++.++.+ |+++|+.++
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHh
Confidence 37899999988875 789998764
No 287
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.72 E-value=2.2e-17 Score=195.71 Aligned_cols=121 Identities=26% Similarity=0.371 Sum_probs=93.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc--cCCeeEeCC--------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK--ISGRVNTKG-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~--~~G~I~i~g-------- 734 (950)
++++|++++|+. .++|+||||++++|++++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG---------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC---------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence 678999999953 4699999999999999999999999999999999999986 799999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCCC-------Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKTH-------VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~~-------d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.|+||+|++.++. -|++||+.++... +. ++.+++++.+++.+.. ++.. ..+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~----~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRP----VGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCc----hhhC
Confidence 3899999998765 5999999986431 11 1223334444432211 1222 3479
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 143 SgG~~qrv 150 (500)
T TIGR02633 143 GGGQQQLV 150 (500)
T ss_pred CHHHHHHH
Confidence 99999999
No 288
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.72 E-value=7.1e-18 Score=179.72 Aligned_cols=109 Identities=26% Similarity=0.369 Sum_probs=82.8
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------------eEEEEe-ccCcCC-CccH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------SIAFVP-QQAWIQ-NATL 750 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------------~Iayv~-Q~pwL~-ngTI 750 (950)
..++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++| .++|++ |++.++ +.|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 45799999999999999999999999999999999999999999999876 489997 556664 6799
Q ss_pred HHHHhcCCC---CChhH----HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 751 RDNIVFGKT---HVPRR----YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 751 reNIlfg~~---~d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+||+.++.. .+++. .+++++.+++.+. .++ +...||||||||+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~----~~~~LS~G~~qrl 162 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDT----PVRQLSLGQRMRA 162 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcC----ChhhCCHHHHHHH
Confidence 999976532 22221 2233333333222 223 3357999999998
No 289
>PLN03211 ABC transporter G-25; Provisional
Probab=99.71 E-value=9.2e-18 Score=202.67 Aligned_cols=113 Identities=27% Similarity=0.470 Sum_probs=91.0
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc--CCeeEeCC---------eEEEEeccCcCCC-ccHHH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI--SGRVNTKG---------SIAFVPQQAWIQN-ATLRD 752 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~--~G~I~i~g---------~Iayv~Q~pwL~n-gTIre 752 (950)
++.+|+|+|+++++||+++|+||+|||||||+++|.|..++. +|+|.++| +++||+|++.++. .|+||
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 357999999999999999999999999999999999999885 89999987 4899999999985 69999
Q ss_pred HHhcCC----C--CChhH----HHHHHHHhcCCchhhhCCCCCcccccCC-CCCCCHHHhhcc
Q psy16196 753 NIVFGK----T--HVPRR----YNKVIDACALTPDFEMLPAGDSTEIGEK-GINLSGGQKQRV 804 (950)
Q Consensus 753 NIlfg~----~--~d~~~----y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~-G~~LSGGQKQRI 804 (950)
||.|+. + .++++ .+++++..+ |++..+|.||++ +..||||||||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv 215 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRV 215 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHH
Confidence 999852 1 12221 223333333 344568889875 678999999999
No 290
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2e-17 Score=184.48 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=95.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc----ccCCeeEeCC-----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD----KISGRVNTKG----- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~----~~~G~I~i~g----- 734 (950)
.++++|++++|.... ....+|+||||+|++||.++|+|++|||||||+++|+|..+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLR 77 (330)
T ss_pred eEEEeeeEEEEeCCC-----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCc
Confidence 478999999996310 13469999999999999999999999999999999999986 5899999876
Q ss_pred ------------eEEEEeccCcC---CCccHHHHHhcC---CC-----C-----ChhHHHHHHHHhcCCchhhhCCCCCc
Q psy16196 735 ------------SIAFVPQQAWI---QNATLRDNIVFG---KT-----H-----VPRRYNKVIDACALTPDFEMLPAGDS 786 (950)
Q Consensus 735 ------------~Iayv~Q~pwL---~ngTIreNIlfg---~~-----~-----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~ 786 (950)
.|+||+|+|.. ...||.+||... .. + ..++..++++..+|.+..+
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~------- 150 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD------- 150 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH-------
Confidence 39999999963 346899999642 10 0 1123455566666653211
Q ss_pred ccccCCCCCCCHHHhhcc
Q psy16196 787 TEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 787 T~IGe~G~~LSGGQKQRI 804 (950)
........|||||||||
T Consensus 151 -~~~~~p~~LSgG~~QRv 167 (330)
T PRK15093 151 -AMRSFPYELTEGECQKV 167 (330)
T ss_pred -HHhCCchhCCHHHHHHH
Confidence 11233468999999999
No 291
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.3e-17 Score=195.05 Aligned_cols=117 Identities=27% Similarity=0.372 Sum_probs=90.9
Q ss_pred EeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------
Q psy16196 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------- 734 (950)
Q Consensus 668 ~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------------- 734 (950)
+|++++|++ .++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 ~nl~~~~~~---------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG---------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC---------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 578888853 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccCcCC-CccHHHHHhcCCC-C-----Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 -SIAFVPQQAWIQ-NATLRDNIVFGKT-H-----VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 -~Iayv~Q~pwL~-ngTIreNIlfg~~-~-----d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
.++|++|++.++ +.|++||+.++.. . +.+ +.+++++.+++.. ....+..+|||||||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~q 141 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQ 141 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHH
Confidence 389999998765 4699999998642 1 221 1222333333322 223445789999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
||
T Consensus 142 rv 143 (491)
T PRK10982 142 MI 143 (491)
T ss_pred HH
Confidence 99
No 292
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.71 E-value=2.5e-17 Score=213.91 Aligned_cols=129 Identities=26% Similarity=0.403 Sum_probs=104.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc---ccCCeeEeCC------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD---KISGRVNTKG------ 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~---~~~G~I~i~g------ 734 (950)
.++++|+++.++.. .+++++|+|||+++++|++++|+||+||||||||++|.|..+ +++|+|.++|
T Consensus 759 ~l~~~nl~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~ 833 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK-----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS 833 (1394)
T ss_pred eEEEEeeEEEecCC-----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh
Confidence 47899999998531 024579999999999999999999999999999999999997 6889999987
Q ss_pred ---eEEEEeccC-cCCCccHHHHHhcCC----C--CCh-hH---HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ---SIAFVPQQA-WIQNATLRDNIVFGK----T--HVP-RR---YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ---~Iayv~Q~p-wL~ngTIreNIlfg~----~--~d~-~~---y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.+|||+|++ .+++.|||||+.|+. + .++ ++ .+++++..+|. +-.++.||+.|.+|||||
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHH
Confidence 489999985 467789999999852 1 222 22 24555555543 345889999999999999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 907 rqRl 910 (1394)
T TIGR00956 907 RKRL 910 (1394)
T ss_pred hhHH
Confidence 9999
No 293
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.4e-17 Score=195.30 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=77.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEecc
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQQ 742 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q~ 742 (950)
++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| +|+|++|+
T Consensus 2 l~i~~ls~~~~~---------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~ 72 (530)
T PRK15064 2 LSTANITMQFGA---------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQD 72 (530)
T ss_pred EEEEEEEEEeCC---------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecc
Confidence 678999999953 4699999999999999999999999999999999999999999999986 69999999
Q ss_pred CcCCC-ccHHHHHhcCC
Q psy16196 743 AWIQN-ATLRDNIVFGK 758 (950)
Q Consensus 743 pwL~n-gTIreNIlfg~ 758 (950)
+-++. -|++||+.++.
T Consensus 73 ~~~~~~~tv~e~l~~~~ 89 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGH 89 (530)
T ss_pred CCcCCCCcHHHHHHHhh
Confidence 87664 59999998763
No 294
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.70 E-value=2.8e-17 Score=170.51 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=70.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC--CcccCCeeEeCC--------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKG-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe--~~~~~G~I~i~g-------- 734 (950)
++++|++++|++ .++|+|+||++++|+.++|+|++|||||||+++|.|+ ++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGG---------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCC---------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCH
Confidence 357899999963 4699999999999999999999999999999999999 589999999876
Q ss_pred ------eEEEEeccCcCCCc-cHHHHH
Q psy16196 735 ------SIAFVPQQAWIQNA-TLRDNI 754 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ng-TIreNI 754 (950)
.++|++|+|.++++ |+++|+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l 98 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL 98 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH
Confidence 39999999998875 444444
No 295
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.1e-17 Score=197.38 Aligned_cols=129 Identities=24% Similarity=0.361 Sum_probs=96.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|.... ...++|+||||+|++|+.++||||+|||||||+++|.|+++|.+|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~-----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ-----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC-----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence 3689999999996310 124799999999999999999999999999999999999999999987643
Q ss_pred -------------------eEEEEeccC--cCC-CccHHHHHhcCCC----CCh----hHHHHHHHHhcCCchhhhCCCC
Q psy16196 735 -------------------SIAFVPQQA--WIQ-NATLRDNIVFGKT----HVP----RRYNKVIDACALTPDFEMLPAG 784 (950)
Q Consensus 735 -------------------~Iayv~Q~p--wL~-ngTIreNIlfg~~----~d~----~~y~~Vi~ac~L~~Di~~Lp~G 784 (950)
+|+||+|+| -++ +.||+|||.++.. .+. ++.+++++..+|.+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~ 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE-------A 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC-------h
Confidence 489999998 354 4699999987521 121 23333444444421 0
Q ss_pred CcccccCCCCCCCHHHhhcc
Q psy16196 785 DSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 785 d~T~IGe~G~~LSGGQKQRI 804 (950)
.........+|||||||||
T Consensus 159 -~~~~~~~~~~LSgGq~QRv 177 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRV 177 (623)
T ss_pred -hhHHhCCCccCCHHHHHHH
Confidence 1123445568999999999
No 296
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.4e-17 Score=198.06 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=98.1
Q ss_pred CcEEEEeeEEEecCCCC--CCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------
Q psy16196 663 DPLVIENGTFTWERNTE--GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------ 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~--~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------ 734 (950)
..++++|+++.|+.... ........+|+||||+|++|++++|+|++|||||||+++|+|.++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 46899999999963100 0000123689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeccCc--CC-CccHHHHHhcCC---CC-Ch----hHHHHHHHHhcCCc-hhhhCCCCCcccccCC
Q psy16196 735 ----------SIAFVPQQAW--IQ-NATLRDNIVFGK---TH-VP----RRYNKVIDACALTP-DFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ----------~Iayv~Q~pw--L~-ngTIreNIlfg~---~~-d~----~~y~~Vi~ac~L~~-Di~~Lp~Gd~T~IGe~ 792 (950)
+|+|++|+|. ++ +.||+||+.++. .. +. ++..++++.++|.. ..+..|
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------- 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------- 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc----------
Confidence 3899999984 44 569999997642 11 11 23455666666642 233333
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
..|||||||||
T Consensus 462 -~~LSgGqrQRv 472 (623)
T PRK10261 462 -HEFSGGQRQRI 472 (623)
T ss_pred -ccCCHHHHHHH
Confidence 47999999999
No 297
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.70 E-value=6.2e-17 Score=184.89 Aligned_cols=125 Identities=25% Similarity=0.274 Sum_probs=97.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
..+.++|++|.|..+ ...++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.-.++.+.
T Consensus 20 ~mL~lknL~~~~~~~------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~ 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDG------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAIS 93 (549)
T ss_pred ceeEEEEEEEecCCC------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEec
Confidence 358899999998651 12469999999999999999999999999999999999999999999999976666666
Q ss_pred CcCCC-ccHHHHHhcCC---CCChh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AWIQN-ATLRDNIVFGK---THVPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pwL~n-gTIreNIlfg~---~~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+.+.. .|++|||.++. ..+.+ +.+++++.+++.+.++. +...||||||||+
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRV 152 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRL 152 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHH
Confidence 65544 59999998742 12222 23345566666544433 4568999999999
No 298
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6.9e-17 Score=192.67 Aligned_cols=123 Identities=28% Similarity=0.395 Sum_probs=98.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
..++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++| +|+|++
T Consensus 318 ~~l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDN---------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCC---------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEc
Confidence 36899999999963 4699999999999999999999999999999999999999999999987 799999
Q ss_pred ccCc--CC-CccHHHHHhcCC--CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQAW--IQ-NATLRDNIVFGK--THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~pw--L~-ngTIreNIlfg~--~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++. ++ +.|++||+.+.. ..++++-+++++.+++..+. ...+..+||||||||+
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv 447 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRM 447 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHH
Confidence 9974 33 469999996532 22233445566666553211 2244568999999999
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.9e-17 Score=169.44 Aligned_cols=103 Identities=28% Similarity=0.501 Sum_probs=93.8
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------------eEEEEeccCcCC-CccHHH
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------------SIAFVPQQAWIQ-NATLRD 752 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------------~Iayv~Q~pwL~-ngTIre 752 (950)
++||+.+.-..+|+-|++|||||||+++|.|...|++|.|.++| +||||.||+-|| +-|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 67888888689999999999999999999999999999999987 699999999998 679999
Q ss_pred HHhcCCCCC-hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 753 NIVFGKTHV-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 753 NIlfg~~~d-~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|+.||..+. .+.++++++--++++-++.+| .+||||+||||
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRV 137 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRV 137 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHH
Confidence 999998764 567889998888888888888 48999999999
No 300
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=4e-17 Score=155.33 Aligned_cols=126 Identities=31% Similarity=0.426 Sum_probs=102.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.|++++++..-.+. ...-.+|++++|.|++||.++||||+|||||||+..+.|.-+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~-----~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQG-----EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcCC-----CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH
Confidence 56777776655431 1345799999999999999999999999999999999999999999999865
Q ss_pred --------eEEEEeccCc-CCCccHHHHHhcCCCC-------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 --------SIAFVPQQAW-IQNATLRDNIVFGKTH-------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 --------~Iayv~Q~pw-L~ngTIreNIlfg~~~-------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
+|++|.|.-. |.|.|--||+....+. ..+.-.+.+++.+|.+-+...|. .|||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----------qLSG 149 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA-----------QLSG 149 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc-----------ccCc
Confidence 7999999854 6799999999764322 12345677888899888888874 7999
Q ss_pred HHhhccc
Q psy16196 799 GQKQRVK 805 (950)
Q Consensus 799 GQKQRI~ 805 (950)
|++|||.
T Consensus 150 GEQQRVA 156 (228)
T COG4181 150 GEQQRVA 156 (228)
T ss_pred hHHHHHH
Confidence 9999993
No 301
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.69 E-value=6.3e-17 Score=173.70 Aligned_cols=108 Identities=29% Similarity=0.422 Sum_probs=85.5
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccC-cCCCccHHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQA-WIQNATLRDN 753 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~p-wL~ngTIreN 753 (950)
+|+|+||+|++|+.++|+||+|||||||+++|.|.++ .+|+|.++| .++|++|++ ..++.|++||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 6999999999999999999999999999999999986 499999876 389999997 4667899999
Q ss_pred HhcCCCC--C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 754 IVFGKTH--V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 754 Ilfg~~~--d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
+.++.+. + .++.+++++..++.+.+ ......||||||||+...
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 138 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLA 138 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHH
Confidence 9987432 1 12345555555554322 335568999999999543
No 302
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=8e-17 Score=192.80 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=96.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
..++++|+++.|++ .++|+||||+|++|+.++|+||+|||||||+++|.|..+|++|+|.+++ +|||++
T Consensus 323 ~~l~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD---------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC---------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEe
Confidence 35899999999953 4699999999999999999999999999999999999999999999965 699999
Q ss_pred ccC-cCC-CccHHHHHhcCCCC-----ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQA-WIQ-NATLRDNIVFGKTH-----VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~p-wL~-ngTIreNIlfg~~~-----d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++ .++ +-|++||+.++... ++.+.+++++..++..+. ...+...||||||||+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv 454 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRL 454 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHH
Confidence 997 454 46999999876421 122233444444443211 1223457999999999
No 303
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.69 E-value=5.9e-17 Score=174.30 Aligned_cols=81 Identities=30% Similarity=0.384 Sum_probs=69.8
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeCC--------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTKG-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~g-------- 734 (950)
++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED---------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC---------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH
Confidence 678999999963 46999999999999999999999999999999999995 69999999876
Q ss_pred ------eEEEEeccCcCCCc-cHHHHH
Q psy16196 735 ------SIAFVPQQAWIQNA-TLRDNI 754 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ng-TIreNI 754 (950)
.|+|++|++.++.. |..+|+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~ 99 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFL 99 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHH
Confidence 39999999987654 444443
No 304
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=3.5e-17 Score=173.85 Aligned_cols=109 Identities=27% Similarity=0.358 Sum_probs=85.2
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc----cCCeeEeCC-----------eEEEEeccCc-CCC--cc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK----ISGRVNTKG-----------SIAFVPQQAW-IQN--AT 749 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~----~~G~I~i~g-----------~Iayv~Q~pw-L~n--gT 749 (950)
+|+|+||+|++|+.++|+||+|||||||+++|.|+++| ++|+|.++| .|+||+|+|. .++ .|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999876 5999999995 343 69
Q ss_pred HHHHHhcCCC----CC---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 750 LRDNIVFGKT----HV---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 750 IreNIlfg~~----~d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++||+.+... .. .++.+++++.+++.+ + .+.......+|||||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv 134 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRV 134 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHH
Confidence 9999865321 11 123455555555531 1 2344566789999999999
No 305
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=4.9e-18 Score=165.91 Aligned_cols=127 Identities=27% Similarity=0.418 Sum_probs=99.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.+..+|...+|. .++|.+|+||+|++||.|++.||.|+||||....+.|+.+|++|+|.+++
T Consensus 4 ~L~a~~l~K~y~---------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSYK---------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhhC---------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChH
Confidence 356677777775 46899999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCCc-cHHHHHhcCCCCCh---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNA-TLRDNIVFGKTHVP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ng-TIreNIlfg~~~d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|.||||-||.+ ||+|||.---+.-+ +.-++-.++-+|-+++. ....-...|.+||||+|.|+
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~-----i~hlr~~~a~sLSGGERRR~ 148 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH-----ITHLRDSKAYSLSGGERRRV 148 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc-----hHHHhcCcccccccchHHHH
Confidence 59999999999976 99999986544322 21122222233433332 23344578999999999999
No 306
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.69 E-value=2.5e-17 Score=174.00 Aligned_cols=120 Identities=23% Similarity=0.275 Sum_probs=86.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEec-cC
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ-QA 743 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q-~p 743 (950)
+.++|.+..|. ++++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|...+..+ ..
T Consensus 23 l~~~~~~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVG---------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGG 93 (224)
T ss_pred hhhhhhhhhcC---------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccc
Confidence 44555565554 357999999999999999999999999999999999999999999999996544333 23
Q ss_pred c-CCCccHHHHHhcCCCC---Chh----HHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 744 W-IQNATLRDNIVFGKTH---VPR----RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 744 w-L~ngTIreNIlfg~~~---d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
. ..+.|++||+.++... +.+ +.+++++...+.+.+ ++ ...+||||||||+
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qrv 151 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DL----PVKTYSSGMKARL 151 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------hC----ChhhCCHHHHHHH
Confidence 3 3467999999875321 211 223333333333222 22 3357999999999
No 307
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.69 E-value=5.2e-17 Score=193.38 Aligned_cols=132 Identities=22% Similarity=0.321 Sum_probs=96.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC-C-------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK-G------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~-g------- 734 (950)
..++++|+++.|+... ....++|+|+||+|++|++++|+||+|||||||+++|.|..+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~----~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD----RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccCC----CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc
Confidence 3589999999995200 013469999999999999999999999999999999999999999999984 2
Q ss_pred ------------eEEEEeccCcCCC-ccHHHHHhcCCC--CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ------------SIAFVPQQAWIQN-ATLRDNIVFGKT--HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~n-gTIreNIlfg~~--~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
+|+|++|++-++. .|++||+.++.. ... ++-+++++.++|.+.- .+.........
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~ 427 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDE 427 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhh
Confidence 2899999987776 599999986321 111 1233444555553210 00012334567
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 428 LSgGq~qrv 436 (520)
T TIGR03269 428 LSEGERHRV 436 (520)
T ss_pred CCHHHHHHH
Confidence 999999999
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.8e-17 Score=193.27 Aligned_cols=84 Identities=20% Similarity=0.423 Sum_probs=73.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|. .+|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 265 ~l~~~~l~~~~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 265 VFEVRNVTSRDR-----------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333 (510)
T ss_pred EEEEeCccccCC-----------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHH
Confidence 589999998642 289999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccC---cCC-CccHHHHHhcCC
Q psy16196 735 -----SIAFVPQQA---WIQ-NATLRDNIVFGK 758 (950)
Q Consensus 735 -----~Iayv~Q~p---wL~-ngTIreNIlfg~ 758 (950)
.|+||+|++ -++ +-|++||+.++.
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 366 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISR 366 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhcccc
Confidence 389999984 344 569999998763
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=1.2e-16 Score=191.39 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=96.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
..++++|+++.|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|+.+|++|+|.+++ +|+|++
T Consensus 321 ~~l~~~~l~~~~~~---------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD---------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC---------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEe
Confidence 35899999999953 4699999999999999999999999999999999999999999999965 599999
Q ss_pred ccC-cCC-CccHHHHHhcCCCC---C--hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQA-WIQ-NATLRDNIVFGKTH---V--PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~p-wL~-ngTIreNIlfg~~~---d--~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++ .++ +.|++||+.++... + +.+.+++++.+++.++. ...+..+|||||||||
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv 452 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRV 452 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHH
Confidence 996 244 56999999986431 1 22233444554443211 1233457999999999
No 310
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.68 E-value=5.7e-17 Score=191.74 Aligned_cols=119 Identities=27% Similarity=0.317 Sum_probs=96.2
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 4 l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 4 LQISQGTFRLSD---------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred EEEEeEEEEcCC---------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHH
Confidence 789999999963 3599999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEeccCcC---------CCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ---SIAFVPQQAWI---------QNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ---~Iayv~Q~pwL---------~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
.++|++|++-+ +..|++||+.++.. ++++.+++++..+|.+..+ .....|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~q 142 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETR 142 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHH
Confidence 28999998643 25699999876532 2345566666666643332 234689999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
||
T Consensus 143 rv 144 (490)
T PRK10938 143 KT 144 (490)
T ss_pred HH
Confidence 99
No 311
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=6.2e-17 Score=192.74 Aligned_cols=120 Identities=32% Similarity=0.441 Sum_probs=93.4
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeC---------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTK--------- 733 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~--------- 733 (950)
++++|++++|.. .++|+|+||++.+|++++|+||+|||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFDG---------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEECC---------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccc
Confidence 467899999953 46999999999999999999999999999999999996 7999999875
Q ss_pred --------------C-----------------------eEEEEecc-CcCCC-ccHHHHHhcCCC---CCh----hHHHH
Q psy16196 734 --------------G-----------------------SIAFVPQQ-AWIQN-ATLRDNIVFGKT---HVP----RRYNK 767 (950)
Q Consensus 734 --------------g-----------------------~Iayv~Q~-pwL~n-gTIreNIlfg~~---~d~----~~y~~ 767 (950)
| .++||+|+ +.++. .|++|||.++.. ++. ++.++
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 38999997 56655 699999987521 221 23445
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++.++|++..+ ....+|||||||||
T Consensus 152 ~l~~~gl~~~~~-----------~~~~~LSgGq~qrv 177 (520)
T TIGR03269 152 LIEMVQLSHRIT-----------HIARDLSGGEKQRV 177 (520)
T ss_pred HHHHcCChhhhh-----------cCcccCCHHHHHHH
Confidence 555555543332 33468999999999
No 312
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=5.4e-17 Score=192.48 Aligned_cols=126 Identities=25% Similarity=0.326 Sum_probs=95.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-ccCCeeEeCC-------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTKG------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-~~~G~I~i~g------- 734 (950)
..++++|+++.|+.. .+.++|+|+||+|++|++++|+||+|||||||+++|.|.++ |++|+|.++|
T Consensus 258 ~~l~~~~l~~~~~~~------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 258 VILEVRNLTAWDPVN------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred ceEEEecCccccccc------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC
Confidence 358999999998520 13469999999999999999999999999999999999998 5999999876
Q ss_pred -------eEEEEeccC---cCC-CccHHHHHhcCC--CC------Ch----hHHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 -------SIAFVPQQA---WIQ-NATLRDNIVFGK--TH------VP----RRYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 -------~Iayv~Q~p---wL~-ngTIreNIlfg~--~~------d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.|+|++|++ .++ +.|+.||+.++. .+ +. ++.+++++.+++..+ ....
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~ 401 (506)
T PRK13549 332 PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPEL 401 (506)
T ss_pred HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------Cccc
Confidence 289999996 354 579999998752 11 21 223445555555311 1123
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
+...|||||||||
T Consensus 402 ~~~~LSgG~kqrv 414 (506)
T PRK13549 402 AIARLSGGNQQKA 414 (506)
T ss_pred ccccCCHHHHHHH
Confidence 3468999999999
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.67 E-value=1e-16 Score=160.45 Aligned_cols=61 Identities=31% Similarity=0.471 Sum_probs=56.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
++++|++++|+. .++++|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 61 (163)
T cd03216 1 LELRGITKRFGG---------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG 61 (163)
T ss_pred CEEEEEEEEECC---------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 468899999964 4699999999999999999999999999999999999999999999987
No 314
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.67 E-value=1e-16 Score=191.14 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=94.9
Q ss_pred CcEEEEeeEEEecCCCCC--CCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------
Q psy16196 663 DPLVIENGTFTWERNTEG--EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------ 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~--~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------ 734 (950)
..++++|+++.|+...+. ....+.++|+||||+|++|++++|+||+|||||||+++|.|.++ .+|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999521000 00012469999999999999999999999999999999999985 899999876
Q ss_pred ----------eEEEEeccC--cCC-CccHHHHHhcCCC-----CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 ----------SIAFVPQQA--WIQ-NATLRDNIVFGKT-----HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ----------~Iayv~Q~p--wL~-ngTIreNIlfg~~-----~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
+|+|++|++ .++ +.|++||+.++.. .+. ++.+++++..+|.++. ....
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 389999998 254 4699999987521 111 2233444554553221 2234
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
..+|||||||||
T Consensus 423 ~~~LSgG~~qrv 434 (529)
T PRK15134 423 PAEFSGGQRQRI 434 (529)
T ss_pred CccCCHHHHHHH
Confidence 457999999999
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.67 E-value=6e-17 Score=165.15 Aligned_cols=105 Identities=28% Similarity=0.473 Sum_probs=78.1
Q ss_pred EEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe-EEEEeccCc
Q psy16196 666 VIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-IAFVPQQAW 744 (950)
Q Consensus 666 ~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~-Iayv~Q~pw 744 (950)
+++|+++.|+. .++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|. +. +
T Consensus 1 ~~~~l~~~~~~---------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~---~--- 65 (180)
T cd03214 1 EVENLSVGYGG---------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA---S--- 65 (180)
T ss_pred CeeEEEEEECC---------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC---c---
Confidence 36789999853 46999999999999999999999999999999999999999999999873 10 0
Q ss_pred CCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 745 IQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 745 L~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.-...++..|.+-. ++++.+++.++++ .++.+||||||||+
T Consensus 66 ~~~~~~~~~i~~~~--------q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl 106 (180)
T cd03214 66 LSPKELARKIAYVP--------QALELLGLAHLAD-----------RPFNELSGGERQRV 106 (180)
T ss_pred CCHHHHHHHHhHHH--------HHHHHcCCHhHhc-----------CCcccCCHHHHHHH
Confidence 00011222222211 1666777765443 34578999999999
No 316
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=1.6e-16 Score=189.53 Aligned_cols=121 Identities=23% Similarity=0.261 Sum_probs=98.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
..++++|+++.|++ ..|+++||+|++||.++|+||+|||||||+++|.|+.+|++|+|.++-+|+|++|+
T Consensus 339 ~~l~~~~ls~~~~~----------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGD----------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECC----------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEeccc
Confidence 35899999999853 35999999999999999999999999999999999999999999988789999999
Q ss_pred Cc-CCCccHHHHHhcCCC-CC-hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AW-IQNATLRDNIVFGKT-HV-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pw-L~ngTIreNIlfg~~-~d-~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+- .++.|++||+.++.. +. +.+.+++++..++.+..+ ..-.+|||||||||
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRv 462 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRV 462 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHH
Confidence 76 467899999987632 22 233456677766653332 23457999999999
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.66 E-value=1.8e-16 Score=206.04 Aligned_cols=124 Identities=24% Similarity=0.421 Sum_probs=100.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|++ .++++|+|+||++++||+++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 927 ~~L~I~nLsK~y~~-------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecC-------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHH
Confidence 47999999999963 245799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ----SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ----~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
+|+||+|++.+++ .|++|||.|+.. .. +++.+++++.++|++. ...+..+|||||||
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-----------RNEEAQDLSGGMQR 1068 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHH
Confidence 4899999998886 599999987521 11 1233455555555332 23455789999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
|+
T Consensus 1069 RL 1070 (2272)
T TIGR01257 1069 KL 1070 (2272)
T ss_pred HH
Confidence 99
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.66 E-value=2.1e-16 Score=191.95 Aligned_cols=125 Identities=26% Similarity=0.356 Sum_probs=98.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++.|+.. ....++|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~nl~~~y~~~-----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSG-----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCC-----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHH
Confidence 48899999999641 0134699999999999999999999999999999999999999999998876
Q ss_pred --------eEEEEeccCcCCC-ccHHHHHhcCCCC---C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 --------SIAFVPQQAWIQN-ATLRDNIVFGKTH---V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 --------~Iayv~Q~pwL~n-gTIreNIlfg~~~---d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.++|++|++.+|. .|+.||+.++..+ + +++..+.++.+++.+. +.....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~ 147 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSG 147 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCH
Confidence 3899999999986 5999999864211 1 1223344444444433 3344458999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 148 Gq~qrv 153 (648)
T PRK10535 148 GQQQRV 153 (648)
T ss_pred HHHHHH
Confidence 999999
No 319
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=3e-16 Score=190.53 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=98.0
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
..++++|+++.|++ ..++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.+++ +|+|++
T Consensus 507 ~~L~~~~ls~~y~~--------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPG--------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCC--------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEe
Confidence 46899999999963 34699999999999999999999999999999999999999999999876 699999
Q ss_pred ccCcCCCccHHHHHhcC-----CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQAWIQNATLRDNIVFG-----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~pwL~ngTIreNIlfg-----~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++. ...++.+|+... ...++++.+++++.+++..+.. ......|||||||||
T Consensus 579 Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRv 636 (718)
T PLN03073 579 QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRV 636 (718)
T ss_pred cccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHH
Confidence 9973 344666664321 1234566777888887764332 123468999999999
No 320
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.66 E-value=1.9e-16 Score=155.09 Aligned_cols=68 Identities=29% Similarity=0.491 Sum_probs=63.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
++++|+++.|.. .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGG---------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECC---------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc
Confidence 357899999863 3699999999999999999999999999999999999999999999997 6999999
No 321
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.66 E-value=1.3e-16 Score=189.05 Aligned_cols=125 Identities=25% Similarity=0.295 Sum_probs=93.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-cCCeeEeCC--------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTKG-------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-~~G~I~i~g-------- 734 (950)
.++++|+++.|..+ .+..+|+|+||+|++|++++|+||+|||||||+++|.|.++| .+|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVIN------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccccc------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH
Confidence 58999999988420 134699999999999999999999999999999999999985 899999876
Q ss_pred ------eEEEEeccC----cCCCccHHHHHhcCCC--------CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 ------SIAFVPQQA----WIQNATLRDNIVFGKT--------HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ------~Iayv~Q~p----wL~ngTIreNIlfg~~--------~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
+|+||+|++ ...+.|++||+.++.. .+. ++.+++++.+++.++. ....
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 400 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTAS----------PFLP 400 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCC----------ccCc
Confidence 389999996 3445799999988521 111 1233444455443211 1123
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
...||||||||+
T Consensus 401 ~~~LSgGqkqrv 412 (500)
T TIGR02633 401 IGRLSGGNQQKA 412 (500)
T ss_pred cccCCHHHHHHH
Confidence 357999999998
No 322
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.66 E-value=6.6e-17 Score=169.24 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=81.2
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE-eCCeEEEEeccCcCCCc-cHHHHHhcCCC---CCh
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN-TKGSIAFVPQQAWIQNA-TLRDNIVFGKT---HVP 762 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~-i~g~Iayv~Q~pwL~ng-TIreNIlfg~~---~d~ 762 (950)
+|+||||+|++|++++|+||+|||||||+++|+|+++|++|+|. ++|....+.|++.++.. |++|||.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 78765556778888875 99999987432 233
Q ss_pred hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 763 RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 763 ~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++..+.+. +...|++..++.+ ..||||||||+
T Consensus 82 ~~~~~~~~------~~~~l~~~~~~~~----~~lS~G~~qrv 113 (213)
T PRK15177 82 DEFSHFCY------QLTQLEQCYTDRV----SEYSVTMKTHL 113 (213)
T ss_pred HHHHHHHH------HHhChhHHhhchH----hhcCHHHHHHH
Confidence 32222211 1223344444444 45999999998
No 323
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.66 E-value=2.6e-16 Score=187.63 Aligned_cols=128 Identities=22% Similarity=0.337 Sum_probs=95.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG---- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g---- 734 (950)
.++++|++++|+... ...++|+||||+|++||+++|+||+|||||||+++|.|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~-----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC-----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 489999999996310 124799999999999999999999999999999999999986 799998765
Q ss_pred -------------eEEEEeccCc--CC-CccHHHHHhcCC----CCC----hhHHHHHHHHhcCCchhhhCCCCCccccc
Q psy16196 735 -------------SIAFVPQQAW--IQ-NATLRDNIVFGK----THV----PRRYNKVIDACALTPDFEMLPAGDSTEIG 790 (950)
Q Consensus 735 -------------~Iayv~Q~pw--L~-ngTIreNIlfg~----~~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IG 790 (950)
+|+|++|+|. ++ ..|+++|+.++. ..+ .++.+++++.++|.+... ...
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHh
Confidence 3899999985 33 469999986421 111 123344555555542110 122
Q ss_pred CCCCCCCHHHhhcc
Q psy16196 791 EKGINLSGGQKQRV 804 (950)
Q Consensus 791 e~G~~LSGGQKQRI 804 (950)
.+..+|||||||||
T Consensus 152 ~~~~~LSgGe~qrv 165 (529)
T PRK15134 152 DYPHQLSGGERQRV 165 (529)
T ss_pred hCCcccCHHHHHHH
Confidence 34568999999999
No 324
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.65 E-value=4e-16 Score=189.41 Aligned_cols=123 Identities=24% Similarity=0.401 Sum_probs=94.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
..++++|++++|++ .++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++. .|+|++
T Consensus 318 ~~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~ 388 (635)
T PRK11147 318 IVFEMENVNYQIDG---------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFD 388 (635)
T ss_pred ceEEEeeeEEEECC---------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEe
Confidence 46899999999953 4699999999999999999999999999999999999999999999853 599999
Q ss_pred ccC--cCCCccHHHHHhcCCC-C--C--hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQA--WIQNATLRDNIVFGKT-H--V--PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~p--wL~ngTIreNIlfg~~-~--d--~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++ ...+.|++||+.++.+ . + ..+..++++...+..+. ...+...||||||||+
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl 449 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRL 449 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHH
Confidence 985 3345699999987642 1 1 12223334444443211 1223357999999999
No 325
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.64 E-value=2.8e-16 Score=165.96 Aligned_cols=100 Identities=29% Similarity=0.452 Sum_probs=77.7
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------eEEEEeccCcC---CCccHHHHHhcCCC---
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SIAFVPQQAWI---QNATLRDNIVFGKT--- 759 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------~Iayv~Q~pwL---~ngTIreNIlfg~~--- 759 (950)
|+|++|++++|+||+|||||||+++|.|.++|++|+|.++| +++|++|+|-+ ++.|++|||.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999988 39999999866 46899999987621
Q ss_pred --C--C-h---hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 760 --H--V-P---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 760 --~--d-~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+ + . ++.+++++.+++.+.. ......||||||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 122 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRV 122 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHH
Confidence 1 1 1 2233444555554332 223446999999999
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.64 E-value=4.5e-16 Score=202.34 Aligned_cols=124 Identities=24% Similarity=0.357 Sum_probs=99.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|+. .+.++|+||||+|++||.++|+||+|||||||++.|.|+.+|++|+|.++|
T Consensus 1936 ~~L~v~nLsK~Y~~-------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEECC-------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHH
Confidence 46999999999964 235799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcCCC-ccHHHHHhcCC---CCCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ----SIAFVPQQAWIQN-ATLRDNIVFGK---THVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ----~Iayv~Q~pwL~n-gTIreNIlfg~---~~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
+||||||++-++. -|++||+.+.. ...+ +..+++++.++|.+..+ .+...|||||||
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKq 2077 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKR 2077 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHH
Confidence 3999999987774 69999997631 1111 22344566666644333 234579999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
|+
T Consensus 2078 RL 2079 (2272)
T TIGR01257 2078 KL 2079 (2272)
T ss_pred HH
Confidence 99
No 327
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.64 E-value=2.8e-16 Score=185.83 Aligned_cols=123 Identities=25% Similarity=0.383 Sum_probs=93.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-cCCeeEeCC-------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTKG------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-~~G~I~i~g------- 734 (950)
..++++|+++.|++ ..+|+|+||+|++|+.++|+||+|||||||+++|.|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSYND---------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEECC---------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC
Confidence 46999999999963 3599999999999999999999999999999999998875 699998865
Q ss_pred -------eEEEEeccCcCC---CccHHHHHhcCCC--------CCh---hHHHHHHHHhcCCchhhhCCCCCcccccCCC
Q psy16196 735 -------SIAFVPQQAWIQ---NATLRDNIVFGKT--------HVP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793 (950)
Q Consensus 735 -------~Iayv~Q~pwL~---ngTIreNIlfg~~--------~d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G 793 (950)
+|+|++|++.++ ..|++||+.++.. ..+ ++.+++++.+++.++. ...+.
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCch
Confidence 389999998653 2578888764310 111 2344555555554311 12234
Q ss_pred CCCCHHHhhcc
Q psy16196 794 INLSGGQKQRV 804 (950)
Q Consensus 794 ~~LSGGQKQRI 804 (950)
..||||||||+
T Consensus 400 ~~LSgGq~qrv 410 (490)
T PRK10938 400 HSLSWGQQRLA 410 (490)
T ss_pred hhCCHHHHHHH
Confidence 57999999999
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.64 E-value=2.9e-16 Score=168.52 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=88.2
Q ss_pred eeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE-----------eCC---
Q psy16196 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN-----------TKG--- 734 (950)
Q Consensus 669 ~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~-----------i~g--- 734 (950)
|++++|+. ..++|+|+|+ +++|++++|+||+|||||||+++|.|.++|++|+|. ++|
T Consensus 5 ~~~~~y~~--------~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 5 EPVHRYGP--------NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred CcceeecC--------cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchh
Confidence 57788854 3468999994 999999999999999999999999999999999995 444
Q ss_pred ------------eEEEEeccCcCCCccHHHHHhcCC-C-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------------SIAFVPQQAWIQNATLRDNIVFGK-T-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------------~Iayv~Q~pwL~ngTIreNIlfg~-~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
.++|++|.+.++..++.+||.+.- . .++++.+++++.+++.+ ....+..+|||||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~ 144 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGGE 144 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 268888887777666666665431 1 12345666666666543 2345667899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|||+
T Consensus 145 ~qrv 148 (255)
T cd03236 145 LQRV 148 (255)
T ss_pred HHHH
Confidence 9999
No 329
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=6.3e-16 Score=183.14 Aligned_cols=118 Identities=28% Similarity=0.439 Sum_probs=90.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++ ..+++|+||+|++|++++|+||+|||||||+++|+|+.+|++|+|.++|
T Consensus 257 ~l~~~~~~~-------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKG-------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred EEEEecccc-------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHH
Confidence 578888863 1489999999999999999999999999999999999999999999875
Q ss_pred -----eEEEEeccC----cCCCccHHHHHhcCCC-C--------Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 -----SIAFVPQQA----WIQNATLRDNIVFGKT-H--------VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 -----~Iayv~Q~p----wL~ngTIreNIlfg~~-~--------d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.|+|++|+| ...+.|+.||+.++.. . ++ ++.++.++.+++.++. ....
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 393 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS----------REQL 393 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC----------ccCc
Confidence 389999997 4456899999987531 0 11 1233444444442111 1223
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
..+||||||||+
T Consensus 394 ~~~LSgGq~qrl 405 (501)
T PRK11288 394 IMNLSGGNQQKA 405 (501)
T ss_pred cccCCHHHHHHH
Confidence 458999999999
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.5e-15 Score=184.06 Aligned_cols=122 Identities=20% Similarity=0.412 Sum_probs=95.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
..++++|+++.|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+++ +|||++
T Consensus 311 ~~l~~~~l~~~y~~---------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~ 381 (638)
T PRK10636 311 PLLKMEKVSAGYGD---------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFA 381 (638)
T ss_pred ceEEEEeeEEEeCC---------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEec
Confidence 46899999999953 4699999999999999999999999999999999999999999999964 699999
Q ss_pred ccC--cCC-CccHHHHHhc-CCCCChhHHHHHHHHhcCCc-hhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQA--WIQ-NATLRDNIVF-GKTHVPRRYNKVIDACALTP-DFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~p--wL~-ngTIreNIlf-g~~~d~~~y~~Vi~ac~L~~-Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++ .+. +.|+.+|+.. .....+++.+++++.+.+.. +.. .+...|||||||||
T Consensus 382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl 439 (638)
T PRK10636 382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARL 439 (638)
T ss_pred CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHH
Confidence 985 343 4588888742 22222334455666665542 222 23457999999999
No 331
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=4.6e-16 Score=153.87 Aligned_cols=121 Identities=25% Similarity=0.441 Sum_probs=95.3
Q ss_pred CCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcC---CC
Q psy16196 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWI---QN 747 (950)
Q Consensus 684 ~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL---~n 747 (950)
.++++|+++|++|++|+++.|+|..|+|||||+++|.|.+.|++|+|.++| .++=|.|+|-. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 357899999999999999999999999999999999999999999999987 47889999964 57
Q ss_pred ccHHHHHhcCCCCChh-HHHHHHHHh---cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 748 ATLRDNIVFGKTHVPR-RYNKVIDAC---ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 748 gTIreNIlfg~~~d~~-~y~~Vi~ac---~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
-||.||+.....--+. -+...+..- .-.+-++.+|.|.+-..+.+---|||||||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 7999999864211000 011111111 11234778899999889999889999999987
No 332
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=8.5e-16 Score=182.06 Aligned_cols=117 Identities=21% Similarity=0.431 Sum_probs=89.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|+++ ++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 257 ~l~~~~l~~--------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~ 322 (501)
T PRK10762 257 RLKVDNLSG--------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQ 322 (501)
T ss_pred EEEEeCccc--------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 578888763 369999999999999999999999999999999999999999999976
Q ss_pred -----eEEEEeccC---cC-CCccHHHHHhcCCC---------CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 -----SIAFVPQQA---WI-QNATLRDNIVFGKT---------HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 -----~Iayv~Q~p---wL-~ngTIreNIlfg~~---------~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.|+||+|+| .+ .+.|++||+.++.. .+. ++.+++++.+++.++ .....
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 392 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP----------SMEQA 392 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCC----------CccCc
Confidence 389999997 34 45799999987521 111 123334444444211 12344
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
...|||||||||
T Consensus 393 ~~~LSgGekqrv 404 (501)
T PRK10762 393 IGLLSGGNQQKV 404 (501)
T ss_pred hhhCCHHHHHHH
Confidence 567999999999
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.6e-15 Score=181.92 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=72.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEecc
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQQ 742 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q~ 742 (950)
|.++|++++|.. .++|+|+||+|++|+.++||||+|||||||+++|.|+++|++|+|.++| .|+|++|+
T Consensus 2 i~i~nls~~~g~---------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~ 72 (638)
T PRK10636 2 IVFSSLQIRRGV---------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQE 72 (638)
T ss_pred EEEEEEEEEeCC---------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecC
Confidence 678999999953 5699999999999999999999999999999999999999999999987 58999997
Q ss_pred CcCCCccHHHHHh
Q psy16196 743 AWIQNATLRDNIV 755 (950)
Q Consensus 743 pwL~ngTIreNIl 755 (950)
+..+..|+.+++.
T Consensus 73 ~~~~~~~~~~~v~ 85 (638)
T PRK10636 73 TPALPQPALEYVI 85 (638)
T ss_pred CCCCCCCHHHHHH
Confidence 6555567766654
No 334
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.61 E-value=2.5e-15 Score=171.18 Aligned_cols=127 Identities=30% Similarity=0.426 Sum_probs=93.5
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc----CCeeEeCC-----
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI----SGRVNTKG----- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~----~G~I~i~g----- 734 (950)
.++++|.+..|... ....++++||||+|.+||.+||||.+||||||+.++|+|..++. +|+|..+|
T Consensus 5 lL~V~nL~v~~~~~-----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATD-----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecC-----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 58999999988752 01236999999999999999999999999999999999999887 89998876
Q ss_pred ------------eEEEEeccCc-CCCc--cHHHHHh----cCCCC-Ch---hHHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 ------------SIAFVPQQAW-IQNA--TLRDNIV----FGKTH-VP---RRYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 ------------~Iayv~Q~pw-L~ng--TIreNIl----fg~~~-d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.|||++|+|+ .+|- ||.+-|. ..... -+ ++-.+.++..+|.+.... ..
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------cc
Confidence 6999999986 4443 6665554 22221 12 233344445566444332 22
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
--..|||||||||
T Consensus 151 yPheLSGG~rQRv 163 (539)
T COG1123 151 YPHQLSGGMRQRV 163 (539)
T ss_pred CCcccCchHHHHH
Confidence 2358999999999
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=3.6e-15 Score=193.13 Aligned_cols=135 Identities=21% Similarity=0.368 Sum_probs=101.3
Q ss_pred CcEEEEeeEEEecCCCCC----CCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc--ccCCeeEeCC--
Q psy16196 663 DPLVIENGTFTWERNTEG----EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--KISGRVNTKG-- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~----~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~--~~~G~I~i~g-- 734 (950)
..+.++|+++..+...+. ...+...+|+|||+++++|++++|+||+||||||||+.|.|..+ +.+|+|.++|
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 468999999987532110 01123469999999999999999999999999999999999976 3689999987
Q ss_pred --------eEEEEeccCcCC-CccHHHHHhcCC----C--CCh-hH---HHHHHHHhcCCchhhhCCCCCcccccCCC-C
Q psy16196 735 --------SIAFVPQQAWIQ-NATLRDNIVFGK----T--HVP-RR---YNKVIDACALTPDFEMLPAGDSTEIGEKG-I 794 (950)
Q Consensus 735 --------~Iayv~Q~pwL~-ngTIreNIlfg~----~--~d~-~~---y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G-~ 794 (950)
.+|||+|++.++ +.|++||+.|+. + .+. ++ .+++++..+|.+ -.++.||..| .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCCCC
Confidence 389999997654 579999998852 1 222 22 345566655532 2367787665 5
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
.||||||||+
T Consensus 1019 ~LSgGerkRv 1028 (1470)
T PLN03140 1019 GLSTEQRKRL 1028 (1470)
T ss_pred CcCHHHHHHH
Confidence 7999999999
No 336
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.60 E-value=2.5e-15 Score=171.19 Aligned_cols=132 Identities=26% Similarity=0.408 Sum_probs=100.0
Q ss_pred CCcEEEEeeEEEecCCCCC--CCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----
Q psy16196 662 TDPLVIENGTFTWERNTEG--EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~--~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----- 734 (950)
...++++|++..|.....- .......+++||||++++||.++|||++|||||||.++|+|..+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3568899999999742100 001234689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeccCcC---CCccHHHHHhcC----CCCC-hh---HHHHHHHHhcCCch-hhhCCCCCcccccCC
Q psy16196 735 ----------SIAFVPQQAWI---QNATLRDNIVFG----KTHV-PR---RYNKVIDACALTPD-FEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ----------~Iayv~Q~pwL---~ngTIreNIlfg----~~~d-~~---~y~~Vi~ac~L~~D-i~~Lp~Gd~T~IGe~ 792 (950)
++=++.|+|.= ...||+++|.-. .... .+ +-.+.++..+|.++ +...|
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------- 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------- 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc----------
Confidence 57889999874 578999998643 2221 22 33344667777653 44444
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
..|||||||||
T Consensus 428 -~elSGGQrQRv 438 (539)
T COG1123 428 -HELSGGQRQRV 438 (539)
T ss_pred -hhcCcchhHHH
Confidence 57999999999
No 337
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=1.6e-15 Score=157.77 Aligned_cols=114 Identities=24% Similarity=0.345 Sum_probs=86.5
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe-EEEEecc
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-IAFVPQQ 742 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~-Iayv~Q~ 742 (950)
.++++|++..|+............+++||||+|++||.+++||.+||||||+-++|+|.++|++|+|..+|+ +.-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 477888888886421100000136899999999999999999999999999999999999999999999984 21111
Q ss_pred CcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCc-hhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 743 AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTP-DFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 743 pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~-Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
..-..+++.+.++..+|.+ .+...|+ .|||||||||.
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~~ryPh-----------elSGGQrQRi~ 119 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFLYRYPH-----------ELSGGQRQRIG 119 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHhhcCCc-----------ccCchhhhhHH
Confidence 2222356888889999876 4666764 79999999993
No 338
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.5e-15 Score=159.61 Aligned_cols=124 Identities=24% Similarity=0.445 Sum_probs=89.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC-----
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG----- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g----- 734 (950)
++++|.+..|.... ....+++||||+|++||.+||||.+||||||+.++|+|+++. .+|+|..+|
T Consensus 2 L~v~nL~v~f~~~~-----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTDA-----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecCC-----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence 46788888776410 134689999999999999999999999999999999999983 578988776
Q ss_pred ------------eEEEEeccCcC-CC--ccHH----HHHhcCCCC--C---hhHHHHHHHHhcCCc---hhhhCCCCCcc
Q psy16196 735 ------------SIAFVPQQAWI-QN--ATLR----DNIVFGKTH--V---PRRYNKVIDACALTP---DFEMLPAGDST 787 (950)
Q Consensus 735 ------------~Iayv~Q~pwL-~n--gTIr----eNIlfg~~~--d---~~~y~~Vi~ac~L~~---Di~~Lp~Gd~T 787 (950)
.|||++|+|-- +| -||. |-|...... . .++-.+.++..++.+ -++..|
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP----- 151 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP----- 151 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-----
Confidence 69999999752 22 2443 444432221 1 223344455556643 356666
Q ss_pred cccCCCCCCCHHHhhcc
Q psy16196 788 EIGEKGINLSGGQKQRV 804 (950)
Q Consensus 788 ~IGe~G~~LSGGQKQRI 804 (950)
..|||||||||
T Consensus 152 ------helSGGMrQRV 162 (316)
T COG0444 152 ------HELSGGMRQRV 162 (316)
T ss_pred ------cccCCcHHHHH
Confidence 47999999999
No 339
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=1.8e-15 Score=157.69 Aligned_cols=108 Identities=30% Similarity=0.479 Sum_probs=91.0
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------------eEEEEecc-CcCCCcc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------------SIAFVPQQ-AWIQNAT 749 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------------~Iayv~Q~-pwL~ngT 749 (950)
-++|+||+|+.||+.+|.|=+|||||||+++|-|..+|+.|+|.++| ++++|.|+ .-+.+.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999999999999999987 69999998 4566889
Q ss_pred HHHHHhcCCCC----ChhHHH---HHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 750 LRDNIVFGKTH----VPRRYN---KVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 750 IreNIlfg~~~----d~~~y~---~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
|-||..||.+. .+++.+ ++++..+|+..=...|+ .||||+||||..
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGL 175 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGL 175 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHH
Confidence 99999999653 234444 45555677766666664 699999999943
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.58 E-value=1.8e-15 Score=152.53 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=58.6
Q ss_pred EeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-eEEEEeccC
Q psy16196 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQA 743 (950)
Q Consensus 668 ~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-~Iayv~Q~p 743 (950)
.|+++.|.+ .++++| +|++++|+.++|+||+|||||||+++|.|.++|++|+|.++| .++|++|++
T Consensus 4 ~~l~~~~~~---------~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~ 70 (177)
T cd03222 4 PDCVKRYGV---------FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYI 70 (177)
T ss_pred CCeEEEECC---------EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccC
Confidence 366777753 467888 499999999999999999999999999999999999999998 599999965
No 341
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.58 E-value=2.6e-15 Score=178.03 Aligned_cols=117 Identities=26% Similarity=0.427 Sum_probs=86.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++. .+|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 268 ~l~~~~l~~--------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTG--------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCC--------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHH
Confidence 578888762 159999999999999999999999999999999999999999999876
Q ss_pred -----eEEEEeccCc---CC-CccHHHHHhcC----CCC--Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 -----SIAFVPQQAW---IQ-NATLRDNIVFG----KTH--VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -----~Iayv~Q~pw---L~-ngTIreNIlfg----~~~--d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.|+||+|++- ++ +.|++||+... ..+ .. ++.+++++.+++.. + ....+...
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~ 403 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------N----HAEQAART 403 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------C----CccCcccc
Confidence 3899999862 44 46999999632 011 11 12334444444421 1 12334467
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 404 LSgG~kqrl 412 (510)
T PRK15439 404 LSGGNQQKV 412 (510)
T ss_pred CCcHHHHHH
Confidence 999999999
No 342
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.8e-15 Score=175.35 Aligned_cols=121 Identities=25% Similarity=0.360 Sum_probs=87.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..|+++|+++.+ .++|+|+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 249 ~~i~~~~l~~~~-----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR-----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc-----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH
Confidence 358999998862 2489999999999999999999999999999999999999999999986
Q ss_pred ------eEEEEeccCc---C-CCccHHHHHhcC-----CC----CChh----HHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 ------SIAFVPQQAW---I-QNATLRDNIVFG-----KT----HVPR----RYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 ------~Iayv~Q~pw---L-~ngTIreNIlfg-----~~----~d~~----~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.++|++|++- + .+.|+++|+++. .. .+.+ +.+++++...+.++ ....
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~ 387 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP----------GHRT 387 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC----------Cccc
Confidence 1899999852 3 346777774332 11 1111 12223333333211 1244
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
...+|||||||||
T Consensus 388 ~~~~LSgGq~qrv 400 (491)
T PRK10982 388 QIGSLSGGNQQKV 400 (491)
T ss_pred ccccCCcHHHHHH
Confidence 5568999999999
No 343
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=2.8e-15 Score=152.53 Aligned_cols=120 Identities=25% Similarity=0.362 Sum_probs=93.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
.+.++++.++.. -.+++|+||++++||.++++||.||||||++++|.|+|+|++|+|..+|
T Consensus 5 L~v~~l~k~FGG---------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFGG---------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecCC---------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHH
Confidence 567788887753 4689999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcCCC-ccHHHHHhcCCC-------------C---Chh---HHHHHHHHhcCCchhhhCCCCCccccc
Q psy16196 735 ----SIAFVPQQAWIQN-ATLRDNIVFGKT-------------H---VPR---RYNKVIDACALTPDFEMLPAGDSTEIG 790 (950)
Q Consensus 735 ----~Iayv~Q~pwL~n-gTIreNIlfg~~-------------~---d~~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IG 790 (950)
.|+--.|.+-+|. .|+-||++-|.- + .++ +-.+.++-++|. -.-.
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-----------~~a~ 144 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-----------ELAD 144 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-----------hhhc
Confidence 4899999999885 599999987622 1 111 112222333332 2334
Q ss_pred CCCCCCCHHHhhcc
Q psy16196 791 EKGINLSGGQKQRV 804 (950)
Q Consensus 791 e~G~~LSGGQKQRI 804 (950)
+...+||+||+.|+
T Consensus 145 ~~A~~LsyG~qR~L 158 (250)
T COG0411 145 RPAGNLSYGQQRRL 158 (250)
T ss_pred chhhcCChhHhHHH
Confidence 55678999999999
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.55 E-value=1.6e-14 Score=175.39 Aligned_cols=83 Identities=27% Similarity=0.376 Sum_probs=72.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
.++++|++++|+. .++|+||||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 3 ~l~i~~ls~~~~~---------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFSD---------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeCC---------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEecc
Confidence 3789999999953 4699999999999999999999999999999999999999999999987 4799999
Q ss_pred cCcC-CCccHHHHHh
Q psy16196 742 QAWI-QNATLRDNIV 755 (950)
Q Consensus 742 ~pwL-~ngTIreNIl 755 (950)
.+.. ..+++.+++.
T Consensus 74 ~~~~~~~~~v~~~~~ 88 (635)
T PRK11147 74 DPPRNVEGTVYDFVA 88 (635)
T ss_pred CCCCCCCCCHHHHHH
Confidence 8643 3478887764
No 345
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.1e-14 Score=148.49 Aligned_cols=109 Identities=27% Similarity=0.431 Sum_probs=91.1
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc--CcCCCccHHHHHhc-----C
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ--AWIQNATLRDNIVF-----G 757 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~--pwL~ngTIreNIlf-----g 757 (950)
...+|+||||++.+||.++|||+.|||||||++.|.|-++|++|+|.++|+|++.--- -+-...|-||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 4579999999999999999999999999999999999999999999999998754332 33456799999975 2
Q ss_pred --CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 758 --KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 758 --~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+...+++++++++=+.|.++++. | --+.|-|.+.|+
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRL 156 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARL 156 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHH
Confidence 23345789999999999877653 3 358999999999
No 346
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=161.17 Aligned_cols=122 Identities=28% Similarity=0.413 Sum_probs=101.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..+++++++..|+. -.+++||||+|++||..|+.|..|+|||||++.|.|.|+|++|+|.++|
T Consensus 3 ~~l~~~~itK~f~~---------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG---------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC---------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence 36899999999974 4689999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeccCcCC-CccHHHHHhcCCCCC----------hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 ------SIAFVPQQAWIQ-NATLRDNIVFGKTHV----------PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 ------~Iayv~Q~pwL~-ngTIreNIlfg~~~d----------~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.||+|.|..-|+ +-|+.|||..|.+-. .++.++..+.++|.-|.+ ++-..||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCC
Confidence 499999998876 669999999998632 234455555666655543 2335699
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
=||||||
T Consensus 143 VG~qQRV 149 (501)
T COG3845 143 VGEQQRV 149 (501)
T ss_pred cchhHHH
Confidence 9999999
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.1e-14 Score=145.10 Aligned_cols=59 Identities=36% Similarity=0.664 Sum_probs=54.9
Q ss_pred EEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 667 ~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
++|+++.|+. .++++|+||++++|+.++|+|++|||||||+++|.|++++.+|+|.++|
T Consensus 2 ~~~~~~~~~~---------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~ 60 (157)
T cd00267 2 IENLSFRYGG---------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 (157)
T ss_pred eEEEEEEeCC---------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 5788998864 3699999999999999999999999999999999999999999999987
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=99.54 E-value=7.6e-15 Score=190.14 Aligned_cols=120 Identities=23% Similarity=0.389 Sum_probs=90.2
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC----------eEEEEeccCcCC-CccH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG----------SIAFVPQQAWIQ-NATL 750 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g----------~Iayv~Q~pwL~-ngTI 750 (950)
...+|+|+|+.|+||++++|+||+||||||||++|.|.+++. +|+|.++| .++||+|++.++ +.|+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 456999999999999999999999999999999999999998 99999987 489999997655 5799
Q ss_pred HHHHhcCCC-------CC-------hh---------HHHHHHHHhcCC--------c-hhh--hCCCCCcccccCCC-CC
Q psy16196 751 RDNIVFGKT-------HV-------PR---------RYNKVIDACALT--------P-DFE--MLPAGDSTEIGEKG-IN 795 (950)
Q Consensus 751 reNIlfg~~-------~d-------~~---------~y~~Vi~ac~L~--------~-Di~--~Lp~Gd~T~IGe~G-~~ 795 (950)
|||+.|+.. ++ ++ +.++.++++..+ + -++ .|.+-.+|.||++. ..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999998521 11 01 111122232211 1 122 24556689998764 47
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 337 lSGGerkRV 345 (1470)
T PLN03140 337 ISGGQKKRV 345 (1470)
T ss_pred CCcccceee
Confidence 999999999
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=99.54 E-value=5.9e-15 Score=176.22 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=89.5
Q ss_pred eeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE-----------eCC---
Q psy16196 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN-----------TKG--- 734 (950)
Q Consensus 669 ~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~-----------i~g--- 734 (950)
+++..|.. ..++|++++ .+++|+.++|+||+|||||||++.|.|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~--------~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 78 EPVHRYGV--------NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred CceEEecC--------CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHH
Confidence 47777854 457999999 9999999999999999999999999999999999996 544
Q ss_pred ------------eE----EEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 ------------SI----AFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 ------------~I----ayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
++ .|++|.|+++.+|++||+.+.. ..++.+++++..+|.+..+. .-.+|||
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~~-----------~~~~LSg 215 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILDR-----------DISELSG 215 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhcC-----------ChhhCCH
Confidence 13 4556678889999999997532 23456677777776543322 2357999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
|||||+
T Consensus 216 Ge~qrv 221 (590)
T PRK13409 216 GELQRV 221 (590)
T ss_pred HHHHHH
Confidence 999999
No 350
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.53 E-value=7.8e-15 Score=163.43 Aligned_cols=90 Identities=30% Similarity=0.382 Sum_probs=72.3
Q ss_pred EEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhH
Q psy16196 704 IVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRR 764 (950)
Q Consensus 704 IVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~ 764 (950)
|+||+|||||||+++|.|+++|++|+|.++| +|+|++|++.+|. .|++|||.|+.. .+ +++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 4999999999986 499999998742 11 124
Q ss_pred HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 765 YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 765 y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.+++++.++|.+..+.. ..+|||||||||
T Consensus 81 ~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRv 109 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK-----------PHQLSGGQQQRV 109 (325)
T ss_pred HHHHHHHcCCcchhcCC-----------hhhCCHHHHHHH
Confidence 45566666665544443 358999999999
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.53 E-value=1e-14 Score=189.69 Aligned_cols=113 Identities=19% Similarity=0.381 Sum_probs=87.8
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC----cccCCeeEeCC------------eEEEEeccCcCC-C
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM----DKISGRVNTKG------------SIAFVPQQAWIQ-N 747 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~----~~~~G~I~i~g------------~Iayv~Q~pwL~-n 747 (950)
.+++|+|+|+++++||+++|+||+||||||||++|.|.. .+.+|+|.++| .++||+|++.++ +
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 457999999999999999999999999999999999986 46899999987 289999997665 4
Q ss_pred ccHHHHHhcCCC----------CChhHH-HH----HHHHhcCCchhhhCCCCCcccccCC-CCCCCHHHhhcc
Q psy16196 748 ATLRDNIVFGKT----------HVPRRY-NK----VIDACALTPDFEMLPAGDSTEIGEK-GINLSGGQKQRV 804 (950)
Q Consensus 748 gTIreNIlfg~~----------~d~~~y-~~----Vi~ac~L~~Di~~Lp~Gd~T~IGe~-G~~LSGGQKQRI 804 (950)
-|++||+.|+.. .+++.+ ++ +++..+| .+--+|.||++ ...|||||||||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHH
Confidence 699999998521 222222 12 3333333 33456778764 557999999999
No 352
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.1e-14 Score=160.28 Aligned_cols=124 Identities=28% Similarity=0.366 Sum_probs=97.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++.+|+. .++|+|+||++.+||.+|++|.+|+|||||+|.|.|-|+|++|+|.++|
T Consensus 7 ~ll~~~~i~K~Fgg---------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG---------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC---------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH
Confidence 46889999999974 5799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeccCcC-CCccHHHHHhcCCCCCh-------h-HHHHHHHHhc-CCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 ------SIAFVPQQAWI-QNATLRDNIVFGKTHVP-------R-RYNKVIDACA-LTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 ------~Iayv~Q~pwL-~ngTIreNIlfg~~~d~-------~-~y~~Vi~ac~-L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.|+.|.||.-| .|-||.|||-+|++... . .++++-++.+ +.-+ ..-++.| .+||+
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-----~~~~~~v----~~Lsi 148 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-----IDPDTLV----GDLSI 148 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-----CChhhhh----hhCCH
Confidence 49999999876 57899999988875322 2 1222222211 1111 1144555 47999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||-|
T Consensus 149 aqrQ~V 154 (500)
T COG1129 149 AQRQMV 154 (500)
T ss_pred HHHHHH
Confidence 999999
No 353
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.53 E-value=7.8e-15 Score=143.84 Aligned_cols=121 Identities=21% Similarity=0.341 Sum_probs=93.5
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
+++++.+-+|.+ ...+++|+||+++.|+.++|.||.|+||||+|+.|.+++.|++|+|.++|
T Consensus 2 l~v~~l~K~y~~--------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGS--------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccC--------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHH
Confidence 456777777764 33479999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcC-CCccHHHHHhcCCC-C------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWI-QNATLRDNIVFGKT-H------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL-~ngTIreNIlfg~~-~------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+..+-+--| -.-|.||||.|... + .+++-+++.+.-+|.+-++ -|-.++|-|+||||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV 142 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKV 142 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHH
Confidence 57777655444 45699999987422 2 2345566666665544332 34457999999999
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=2.6e-14 Score=166.24 Aligned_cols=87 Identities=28% Similarity=0.511 Sum_probs=80.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
.|.++|++++|. ++++++|+||++.+|+.+++||+.||||||||++|.|+..|++|+|...+ +|+|++|
T Consensus 3 ~i~~~~ls~~~g---------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYG---------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeC---------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCC
Confidence 478999999994 46899999999999999999999999999999999999999999999987 7999999
Q ss_pred cCcCCCc-cHHHHHhcCCC
Q psy16196 742 QAWIQNA-TLRDNIVFGKT 759 (950)
Q Consensus 742 ~pwL~ng-TIreNIlfg~~ 759 (950)
++-.... |++|.++-|..
T Consensus 74 ~~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred CCCcCCCccHHHHHHhhhH
Confidence 9999855 99999988753
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.52 E-value=1.8e-14 Score=145.18 Aligned_cols=84 Identities=32% Similarity=0.413 Sum_probs=64.7
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe--------EEEEeccCcCCCccHHHHHhc
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--------IAFVPQQAWIQNATLRDNIVF 756 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~--------Iayv~Q~pwL~ngTIreNIlf 756 (950)
..++|+|+||++++|+.++|+||+||||||||+++++ .+|++.+.|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 4578999999999999999999999999999999974 5899888764 455554
Q ss_pred CCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 757 GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 757 g~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
.++++..+|..+ ....+..+||||||||+..
T Consensus 68 ---------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 68 ---------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred ---------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHH
Confidence 234444444321 1456778999999999943
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.51 E-value=5.1e-14 Score=163.80 Aligned_cols=125 Identities=26% Similarity=0.373 Sum_probs=102.4
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEE
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFV 739 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv 739 (950)
+..++++|++++|++ ++++++|+||.|.+|+.+|||||.|+||||||+.|+|+..|.+|+|.+.. +|||.
T Consensus 319 ~~vl~~~~~~~~y~~--------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf 390 (530)
T COG0488 319 KLVLEFENVSKGYDG--------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYF 390 (530)
T ss_pred CeeEEEeccccccCC--------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEE
Confidence 457899999999975 46899999999999999999999999999999999999999999999875 69999
Q ss_pred eccC--cCCCccHHHHHhcCCCC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 740 PQQA--WIQNATLRDNIVFGKTH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 740 ~Q~p--wL~ngTIreNIlfg~~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+- +.-+.|+-|++.-+.|. ++......+....+..|-. -.+-..||||||.|+
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl 448 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARL 448 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHH
Confidence 9985 44666999999876643 3555666666666654422 234458999999999
No 357
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=2.3e-14 Score=135.02 Aligned_cols=121 Identities=30% Similarity=0.422 Sum_probs=97.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
+|.++|.+|.|.. ..+|.||+|+.+.|+.+.+.||+|+|||||++.|-=.-.|.+|+..+.|
T Consensus 2 sirv~~in~~yg~---------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGA---------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred ceEEccccccccc---------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCc
Confidence 4788999999964 4689999999999999999999999999999998665567899998865
Q ss_pred ----------eEEEEeccCcCC-CccHHHHHhc------CCCCCh--hHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ----------SIAFVPQQAWIQ-NATLRDNIVF------GKTHVP--RRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ----------~Iayv~Q~pwL~-ngTIreNIlf------g~~~d~--~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.+|+|.|+-.|. .-|+-||+.- |-+.++ .+-.+.++...|.+.-+.+| ..
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lh 141 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LH 141 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------ee
Confidence 599999997664 6799999874 333333 23455666667777777777 57
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||+|||
T Consensus 142 lsggqqqrv 150 (242)
T COG4161 142 LSGGQQQRV 150 (242)
T ss_pred cccchhhhH
Confidence 999999999
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.3e-14 Score=138.51 Aligned_cols=111 Identities=27% Similarity=0.437 Sum_probs=88.5
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-eEE-----------EEeccCcC-CCccHH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIA-----------FVPQQAWI-QNATLR 751 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-~Ia-----------yv~Q~pwL-~ngTIr 751 (950)
+...+.++||++.+||.+.|+||.||||||||+.|.|.++|++|+|..+| .+. |..-+|=| ..-|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 56789999999999999999999999999999999999999999999985 333 33333333 345999
Q ss_pred HHHhcCCC----CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 752 DNIVFGKT----HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 752 eNIlfg~~----~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
||+.|-++ -+++...++++..+|. +++.+|-+ +||-|||.||..
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~~----------~LSAGQqRRvAl 141 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG----------QLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccchh----------hcchhHHHHHHH
Confidence 99999655 2356778888888884 45556654 799999999843
No 359
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.48 E-value=9.1e-15 Score=148.79 Aligned_cols=125 Identities=27% Similarity=0.347 Sum_probs=94.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..|+++|+++.|+ ++++|+|||++|++||..+|+||.||||||||+.+.|+.+|++|.+.+-|
T Consensus 30 ~li~l~~v~v~r~---------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 30 PLIELKNVSVRRN---------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred ceEEecceEEEEC---------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc
Confidence 5699999999996 47899999999999999999999999999999999999999999998754
Q ss_pred ------eEEEEecc---CcCCCccHHHHHhcC---------CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 ------SIAFVPQQ---AWIQNATLRDNIVFG---------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 ------~Iayv~Q~---pwL~ngTIreNIlfg---------~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
+||||+-+ -+.-+-++||-|+=| ++++++.++++.....+ + |.....+..=..|
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~---~-----g~~~la~r~~~~L 172 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLEL---L-----GAKHLADRPFGSL 172 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHH---c-----chhhhccCchhhc
Confidence 68999843 344477888887733 24555555444332211 0 1122233444689
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
|-|||||+
T Consensus 173 S~Ge~rrv 180 (257)
T COG1119 173 SQGEQRRV 180 (257)
T ss_pred CHhHHHHH
Confidence 99999999
No 360
>KOG0061|consensus
Probab=99.48 E-value=1.6e-13 Score=164.37 Aligned_cols=131 Identities=28% Similarity=0.478 Sum_probs=101.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc---cCCeeEeCC-----
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK---ISGRVNTKG----- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~---~~G~I~i~g----- 734 (950)
..+.++|.+..-+.... ..+.+|+|||.++++||++||.||+||||||||++|.|-.+. .+|+|.++|
T Consensus 24 ~~~~~~~~~~~~~~~~~----~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK----KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ceeEEEEEEEEecCCCC----ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 35778888876543110 246799999999999999999999999999999999999874 799999998
Q ss_pred -----eEEEEeccCc-CCCccHHHHHhcCC------CCC----hhHHHHHHHHhcCCchhhhCCCCCcccccCC-CCCCC
Q psy16196 735 -----SIAFVPQQAW-IQNATLRDNIVFGK------THV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEK-GINLS 797 (950)
Q Consensus 735 -----~Iayv~Q~pw-L~ngTIreNIlfg~------~~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~-G~~LS 797 (950)
..|||.||-. +-+-||||++.|.. ..+ +++.+++++.-+|+ +. .+|.||.. +..+|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccc
Confidence 5899999866 56789999999852 112 24555666655554 32 47888753 35799
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
||||.||
T Consensus 173 GGErkRv 179 (613)
T KOG0061|consen 173 GGERKRV 179 (613)
T ss_pred cchhhHH
Confidence 9999999
No 361
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=3.6e-14 Score=136.15 Aligned_cols=122 Identities=24% Similarity=0.429 Sum_probs=95.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
.+++++|....|.+ -.+|++||++.++|+.+.|+|.+||||||+|++|-=.-.|..|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~---------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRYGE---------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhccc---------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeC
Confidence 35788888877754 4699999999999999999999999999999999888899999999876
Q ss_pred ------------------eEEEEeccCcCC-CccHHHHHhc------CCCCCh--hHHHHHHHHhcCCchhhhCCCCCcc
Q psy16196 735 ------------------SIAFVPQQAWIQ-NATLRDNIVF------GKTHVP--RRYNKVIDACALTPDFEMLPAGDST 787 (950)
Q Consensus 735 ------------------~Iayv~Q~pwL~-ngTIreNIlf------g~~~d~--~~y~~Vi~ac~L~~Di~~Lp~Gd~T 787 (950)
+.++|.|.--|. ..||-||+.- |.+-++ ++-+..+...++.+--+..|
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----- 150 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----- 150 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----
Confidence 478999986554 5799999863 333332 33344455556655444555
Q ss_pred cccCCCCCCCHHHhhcc
Q psy16196 788 EIGEKGINLSGGQKQRV 804 (950)
Q Consensus 788 ~IGe~G~~LSGGQKQRI 804 (950)
..|||||+||+
T Consensus 151 ------~~LSGGQQQR~ 161 (256)
T COG4598 151 ------AHLSGGQQQRV 161 (256)
T ss_pred ------cccCchHHHHH
Confidence 57999999999
No 362
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.44 E-value=1.2e-13 Score=125.22 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=57.0
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRD 752 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIre 752 (950)
.++|++++|++++|+.++|+||+|||||||+++++ +|++.+.| .++|++|+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999987 78888765 37788887 99999999
Q ss_pred HHhc
Q psy16196 753 NIVF 756 (950)
Q Consensus 753 NIlf 756 (950)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9988
No 363
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=1.5e-13 Score=134.05 Aligned_cols=121 Identities=24% Similarity=0.362 Sum_probs=97.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++.+++. -.+|+|+||+|.+||+-+|+||.|+||||++..|.|-.+|++|++..+|
T Consensus 5 iL~~~~vsVsF~G---------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 5 ILYLDGVSVSFGG---------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred eEEEeceEEEEcc---------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCH
Confidence 5778888888864 4689999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCC---------------CChhHHHHHHHHhcCCchhhhCCCCCcccccCC
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKT---------------HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~---------------~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~ 792 (950)
.|+==.|.|-+|. -||+||+-.... .+.++.++++.-.+|.+-- ..-
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~ 144 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRL 144 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhh
Confidence 3778899999885 599999864321 1223666677666664321 122
Q ss_pred CCCCCHHHhhcc
Q psy16196 793 GINLSGGQKQRV 804 (950)
Q Consensus 793 G~~LSGGQKQRI 804 (950)
..+||-|||||+
T Consensus 145 A~~LSHGqKQwL 156 (249)
T COG4674 145 AALLSHGQKQWL 156 (249)
T ss_pred hhhhccchhhhh
Confidence 358999999999
No 364
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.43 E-value=6.8e-13 Score=142.53 Aligned_cols=130 Identities=26% Similarity=0.354 Sum_probs=97.9
Q ss_pred CcEEEEeeEEEecCCCCCC--CCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------
Q psy16196 663 DPLVIENGTFTWERNTEGE--GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------ 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~--~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------ 734 (950)
..++.+|+...|+-...-- ..+.-.+.++|||+.++||.++|||.+|||||||-.+|++..++. |+|..+|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4577888887776321000 011234799999999999999999999999999999999999876 9999877
Q ss_pred ----------eEEEEeccCcC---CCccHHHHHhcCCC------CChhHHHHHHHH---hcCCch-hhhCCCCCcccccC
Q psy16196 735 ----------SIAFVPQQAWI---QNATLRDNIVFGKT------HVPRRYNKVIDA---CALTPD-FEMLPAGDSTEIGE 791 (950)
Q Consensus 735 ----------~Iayv~Q~pwL---~ngTIreNIlfg~~------~d~~~y~~Vi~a---c~L~~D-i~~Lp~Gd~T~IGe 791 (950)
++-.|.|||+= ...||-+-|.-|.. -+.++.++|++| .+|+.+ ....|+
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh-------- 425 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH-------- 425 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc--------
Confidence 58899999982 56788888876632 234666666665 467653 556664
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
.+||||||||
T Consensus 426 ---EFSGGQRQRI 435 (534)
T COG4172 426 ---EFSGGQRQRI 435 (534)
T ss_pred ---ccCcchhhHH
Confidence 6999999999
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=3e-13 Score=128.86 Aligned_cols=57 Identities=32% Similarity=0.568 Sum_probs=53.2
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC--C-------------------eEEEEecc
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--G-------------------SIAFVPQQ 742 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~--g-------------------~Iayv~Q~ 742 (950)
-|+++|+||+++.||.+++-||+||||||||+.|-|.|.|++|+|.+. | .||||+|-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 489999999999999999999999999999999999999999999985 2 58999994
No 366
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=9.2e-13 Score=126.88 Aligned_cols=109 Identities=28% Similarity=0.402 Sum_probs=78.4
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCc-CCC-----
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAW-IQN----- 747 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pw-L~n----- 747 (950)
.+.+.|||+.++|+..||+|..|||||||.+.|.|..+|++|+|.++| +|-++.|||- -||
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 468899999999999999999999999999999999999999999987 6899999984 122
Q ss_pred ccHHHHHh-cCCCCC-hhHHH---HHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 748 ATLRDNIV-FGKTHV-PRRYN---KVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 748 gTIreNIl-fg~~~d-~~~y~---~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
|+|-|-=+ ..-+.+ ++|-+ +.++..+|-.|-..+ .-..||-||||||.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVa 159 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVA 159 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHH
Confidence 22222110 112223 23333 445555665554332 23579999999993
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.4e-12 Score=128.60 Aligned_cols=123 Identities=25% Similarity=0.354 Sum_probs=89.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC--CcccCCeeEeCC--------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKG-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe--~~~~~G~I~i~g-------- 734 (950)
++++|.+.+-+. .+.+|+++||+|++||..+|.||.|||||||.++|.|. |++++|+|..+|
T Consensus 4 L~I~dLhv~v~~--------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 4 LEIKDLHVEVEG--------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred eEEeeeEEEecC--------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCH
Confidence 678888776542 24899999999999999999999999999999999997 699999999998
Q ss_pred ------eEEEEeccCcCCCc-cHHHHHhcC-------CCCChhHHHHHHHH---hcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 ------SIAFVPQQAWIQNA-TLRDNIVFG-------KTHVPRRYNKVIDA---CALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ng-TIreNIlfg-------~~~d~~~y~~Vi~a---c~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
.|....|.|-=+.| |+++=+.-+ ++...+.++++-++ ..+++++. +..|+ ..+|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFS 146 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFS 146 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcC
Confidence 48889999986655 666655422 11123444444333 33443221 11122 3599
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
||+|.|.
T Consensus 147 GGEkKR~ 153 (251)
T COG0396 147 GGEKKRN 153 (251)
T ss_pred cchHHHH
Confidence 9999998
No 368
>PLN03073 ABC transporter F family; Provisional
Probab=99.34 E-value=3.2e-12 Score=155.65 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=63.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
..|.++|++++|+. .++|+|+||+|++|+.++||||+||||||||++|.|+. ..| +--+|+|+|++|+
T Consensus 176 ~~I~i~nls~~y~~---------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~--~~g-~p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGG---------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA--IDG-IPKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCC---------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCC-CCCCCEEEEEecc
Confidence 46999999999963 45999999999999999999999999999999999974 124 3334789999998
Q ss_pred CcCCCccHHHH
Q psy16196 743 AWIQNATLRDN 753 (950)
Q Consensus 743 pwL~ngTIreN 753 (950)
+--.+-|+.|.
T Consensus 244 ~~g~~~t~~~~ 254 (718)
T PLN03073 244 VVGDDTTALQC 254 (718)
T ss_pred CCCCCCCHHHH
Confidence 65444455443
No 369
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.31 E-value=4.4e-12 Score=136.37 Aligned_cols=126 Identities=24% Similarity=0.403 Sum_probs=91.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-----cCCeeEeCC---
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-----ISGRVNTKG--- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-----~~G~I~i~g--- 734 (950)
..+.++|.+..+... .....++++|||+|.+||.+|+||.+|||||--.++++|.++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~-----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQE-----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecC-----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 357888888877641 1346799999999999999999999999999999999999976 367888776
Q ss_pred --------------eEEEEeccCcC-CC--ccH----HHHHhcCCCCC----hhHHHHHHHHhcCC---chhhhCCCCCc
Q psy16196 735 --------------SIAFVPQQAWI-QN--ATL----RDNIVFGKTHV----PRRYNKVIDACALT---PDFEMLPAGDS 786 (950)
Q Consensus 735 --------------~Iayv~Q~pwL-~n--gTI----reNIlfg~~~d----~~~y~~Vi~ac~L~---~Di~~Lp~Gd~ 786 (950)
+|+++.|||.- .| -|| -|-|...+... .++--+.++-.++. .-++..|+
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH--- 156 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH--- 156 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc---
Confidence 79999999963 12 134 44555544432 22333334444442 34666664
Q ss_pred ccccCCCCCCCHHHhhcc
Q psy16196 787 TEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 787 T~IGe~G~~LSGGQKQRI 804 (950)
.|||||||||
T Consensus 157 --------eLSGGqRQRV 166 (534)
T COG4172 157 --------ELSGGQRQRV 166 (534)
T ss_pred --------ccCcchhhHH
Confidence 7999999999
No 370
>KOG0927|consensus
Probab=99.30 E-value=3.2e-12 Score=142.41 Aligned_cols=125 Identities=23% Similarity=0.407 Sum_probs=104.8
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC--CeEEEE
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--GSIAFV 739 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~--g~Iayv 739 (950)
.+.+.++|++|+|++ +..+.+++||-|.+++.+++|||.|+||||||+++.|++.|..|.|.-. ..+++-
T Consensus 387 ~pvi~~~nv~F~y~~--------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y 458 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD--------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRY 458 (614)
T ss_pred CCeEEEeccccCCCC--------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhh
Confidence 357899999999986 4479999999999999999999999999999999999999999998755 367776
Q ss_pred ecc---CcCCCccHHHHHh--cCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 740 PQQ---AWIQNATLRDNIV--FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 740 ~Q~---pwL~ngTIreNIl--fg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|. .--...|.-|+++ |......+..+.++.-|+|..|.+.-|- .+||+|||.||
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rV 518 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRV 518 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhH
Confidence 774 3456778888886 4444556778899999999988776664 48999999999
No 371
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=6.1e-12 Score=127.22 Aligned_cols=125 Identities=23% Similarity=0.367 Sum_probs=95.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.+++++++-++. +..+++||||++++|+..+++||.|+||||.++.|||+++|++|+|.++|
T Consensus 2 ~L~ie~vtK~Fg---------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG---------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhccC---------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhh
Confidence 367889988885 46799999999999999999999999999999999999999999999998
Q ss_pred eEEEEeccCcCC-CccHHHHHhcCCC---CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIAFVPQQAWIQ-NATLRDNIVFGKT---HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Iayv~Q~pwL~-ngTIreNIlfg~~---~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|||.|.+--|. +.|+.|-+.|-.. +..+.-++= +...++.+.-+.. -..+--.||-|-+|.|
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~--~~~kIk~LSKGnqQKI 139 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGK--KTKKIKELSKGNQQKI 139 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccc--ccchHHHhhhhhhHHH
Confidence 899999998775 6799999998532 222221111 1222333221110 1234457999999999
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.20 E-value=1.1e-11 Score=128.01 Aligned_cols=94 Identities=22% Similarity=0.307 Sum_probs=66.5
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC---------eeEeC----------CeEEEEeccCcCCCccH
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG---------RVNTK----------GSIAFVPQQAWIQNATL 750 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G---------~I~i~----------g~Iayv~Q~pwL~ngTI 750 (950)
+++++++++| +++|+||+|||||||+++|.|.+.+..| ++... .+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999988765532 34332 3789999999988
Q ss_pred HHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHHH
Q psy16196 751 RDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQV 808 (950)
Q Consensus 751 reNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~v 808 (950)
|+.. ..++.+++++. ++-. ..+...||||||||+....
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~ 126 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALAL 126 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHH
Confidence 3321 12334444443 1111 2345679999999996543
No 373
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.13 E-value=8.4e-11 Score=112.61 Aligned_cols=127 Identities=21% Similarity=0.324 Sum_probs=86.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.+++++.|..|.+ ..--+||||++.|||..+|||.+||||||||++|.+-+.|+.|+|..+.
T Consensus 6 LL~V~~lsk~Yg~---------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLYGP---------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhhCC---------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh
Confidence 5778888888865 3457899999999999999999999999999999999999999998642
Q ss_pred -------------eEEEEeccCcC---CCccHHHHHhcCCCC--ChhHHHHHHHHhc-CCchhhhCCCCCcccccCCCCC
Q psy16196 735 -------------SIAFVPQQAWI---QNATLRDNIVFGKTH--VPRRYNKVIDACA-LTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 -------------~Iayv~Q~pwL---~ngTIreNIlfg~~~--d~~~y~~Vi~ac~-L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
.=++|-|+|-= +.-|--.||= -+.+ -..-|-++-..++ --+.++ =|.+.|.+...+
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VE----I~~~RiDD~Prt 151 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVE----IDLDRIDDLPRT 151 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcc----cCcccccCcccc
Confidence 36899999841 1112222330 0000 0112333222221 011122 244566677789
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
+|||.+||+
T Consensus 152 FSGGMqQRL 160 (258)
T COG4107 152 FSGGMQQRL 160 (258)
T ss_pred cchHHHHHH
Confidence 999999998
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.11 E-value=1e-10 Score=125.05 Aligned_cols=34 Identities=35% Similarity=0.602 Sum_probs=31.6
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
..|+|||++||.|.+++|+|++|||||||++.++
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHH
Confidence 4699999999999999999999999999998663
No 375
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.10 E-value=1.8e-11 Score=125.92 Aligned_cols=50 Identities=32% Similarity=0.574 Sum_probs=47.7
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~ 735 (950)
-++.+||||+||||+.++.+||.|+||||+||.|.|...|++|.|.|+|.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~ 86 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCc
Confidence 45899999999999999999999999999999999999999999999983
No 376
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.10 E-value=1.6e-10 Score=122.17 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=30.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
+.++|+|+||+|++||.++|+|++|||||||+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 45799999999999999999999999999996
No 377
>KOG0065|consensus
Probab=99.09 E-value=2.8e-10 Score=139.50 Aligned_cols=114 Identities=28% Similarity=0.459 Sum_probs=92.4
Q ss_pred CCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeCC----------eEEEEecc-CcCCCccH
Q psy16196 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTKG----------SIAFVPQQ-AWIQNATL 750 (950)
Q Consensus 684 ~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~g----------~Iayv~Q~-pwL~ngTI 750 (950)
+....|+||+=-++||.++|++|++|+||||||+.|.|-. =..+|+|.|+| .+|||.|+ -++-.-||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 3567899999999999999999999999999999999863 34578899988 58999996 57889999
Q ss_pred HHHHhcCC----C---CChhHH---HHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 751 RDNIVFGK----T---HVPRRY---NKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 751 reNIlfg~----~---~d~~~y---~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
||-+.|.. | .++++| ++|++-.+|++ =-|..||.-|..||..||.|+
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-------~~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-------YADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-------hhhhhccCCCCCCCHHHhcee
Confidence 99999862 1 234444 55666655542 235679999999999999999
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.04 E-value=1.8e-10 Score=123.49 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.1
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
..++.+++ |++++|+||+|||||||+++|.+.
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence 34677766 789999999999999999999843
No 379
>KOG0066|consensus
Probab=99.01 E-value=3.5e-10 Score=122.17 Aligned_cols=122 Identities=28% Similarity=0.395 Sum_probs=87.9
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~ 740 (950)
+.+.++||+|+|+. .+|..++++|-|.--+.++||||.|-||||||++|+|.++|.+|+..-+. +|++-.
T Consensus 585 PvLGlH~VtFgy~g--------qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG--------QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFD 656 (807)
T ss_pred CeeecccccccCCC--------CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechh
Confidence 46789999999986 67899999999999999999999999999999999999999999987764 688888
Q ss_pred ccCc---CCCccHHHHHh--cCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQAW---IQNATLRDNIV--FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~pw---L~ngTIreNIl--fg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|..- -..-|--|-+. |.-||.++ ++.+-..+|..- -.|+ +-..||||||+||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~A--RK~LG~fGL~sH-------AHTi---kikdLSGGQKaRV 713 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEA--RKQLGTFGLASH-------AHTI---KIKDLSGGQKARV 713 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHH--HHHhhhhhhhhc-------cceE---eeeecCCcchHHH
Confidence 8642 12224444432 44444322 222222333221 1111 2246999999999
No 380
>KOG2355|consensus
Probab=99.00 E-value=6.4e-10 Score=109.56 Aligned_cols=122 Identities=25% Similarity=0.440 Sum_probs=88.8
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------- 734 (950)
+.+|++.+..|+|+. ..|..-|+|+++|.|+.+.+||..||||||||+.|.|---...|.|.+.|
T Consensus 11 ~~aievsgl~f~y~~--------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV--------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDT 82 (291)
T ss_pred cceEEEeccEEeccc--------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccc
Confidence 458999999999986 55899999999999999999999999999999999999888889888865
Q ss_pred ------eEEEEecc----------CcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 ------SIAFVPQQ----------AWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 ------~Iayv~Q~----------pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
...|..-+ .-|+-+-=.+-.+||-. .|++|-++.++.... |++ =|-..+|
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDI--dl~-----------WRmHkvS 149 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDI--DLR-----------WRMHKVS 149 (291)
T ss_pred cccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheec--cce-----------EEEeecc
Confidence 23333321 11222222344556544 345666777666432 332 2446899
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
-|||.||
T Consensus 150 DGqrRRV 156 (291)
T KOG2355|consen 150 DGQRRRV 156 (291)
T ss_pred ccchhhh
Confidence 9999999
No 381
>KOG0059|consensus
Probab=98.98 E-value=6e-10 Score=139.62 Aligned_cols=123 Identities=24% Similarity=0.393 Sum_probs=97.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
.++..+|.+..|+. ... +.+++++.|++||..++-|+.||||||+++.|.|+..|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~-------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG-------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecc-------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc
Confidence 57889999999975 222 89999999999999999999999999999999999999999999966
Q ss_pred ------eEEEEeccCcC-CCccHHHHHhcC-----CC--CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWI-QNATLRDNIVFG-----KT--HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL-~ngTIreNIlfg-----~~--~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+||||||+--| ..-|.||.+.+- -+ .-.+.-++.+++.+|.+.... . -.++||||
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~------~-----~~~ySgG~ 703 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK------Q-----VRTYSGGN 703 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc------c-----hhhCCCcc
Confidence 49999997444 567999999763 12 112334556666666544332 1 35899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
|.|+
T Consensus 704 kRkL 707 (885)
T KOG0059|consen 704 KRRL 707 (885)
T ss_pred hhhH
Confidence 9999
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.88 E-value=1.2e-09 Score=114.56 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=72.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEee-CCeEEEEEcCCCCChhHHHHHHcCC-CcccCCeeEe---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVR-EGTLVAIVGSVGAGKSSLVSALCGE-MDKISGRVNT--------- 732 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~-~G~lvaIVG~vGSGKSTLL~aLLGe-~~~~~G~I~i--------- 732 (950)
.|+++|.. +|.. . ++|+|+.. +|++++|+||+|||||||+++|.+. +.+..+....
T Consensus 5 ~i~l~nf~-~y~~--------~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PFRE--------E----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-CcCC--------c----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcC
Confidence 47788776 5543 1 56777654 5899999999999999999999853 3333333332
Q ss_pred ---CCeEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCC-CcccccCCCCCCCHHHhhcccHH
Q psy16196 733 ---KGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAG-DSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 733 ---~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~G-d~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
...|+++.|.+.-.-. ++.+. ..+.+.+. +... ++.| .++.+..++.+||||||||+...
T Consensus 72 ~~~~~~v~~~f~~~~~~~~----~~r~~-gl~~~~~~---~~~~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la 135 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKYR----VERSR-GLDYDQFT---RIVL-------LPQGEFDRFLARPVSTLSGGETFLASLS 135 (213)
T ss_pred CCccEEEEEEEEECCeEEE----EEEec-CCCHHHHH---Hhhh-------hhhcchHHHhcCCccccCHHHHHHHHHH
Confidence 1268999998743222 22222 22222222 2211 2333 35566778889999999998543
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.86 E-value=2.4e-09 Score=111.32 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=65.2
Q ss_pred eEEeeCCeEEEEEcCCCCChhHHHHHH----cCCCcccCCeeEe----------CCeEEEEeccC-----cCC-CccHHH
Q psy16196 693 NMRVREGTLVAIVGSVGAGKSSLVSAL----CGEMDKISGRVNT----------KGSIAFVPQQA-----WIQ-NATLRD 752 (950)
Q Consensus 693 nl~i~~G~lvaIVG~vGSGKSTLL~aL----LGe~~~~~G~I~i----------~g~Iayv~Q~p-----wL~-ngTIre 752 (950)
++++.+| +++|+||+|||||||+.+| .|+..+..|.+.. ...|+++.|++ -+. +-|+.|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 4556677 9999999999999999999 5999988875531 12799999998 222 238999
Q ss_pred HHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 753 NIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 753 NIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
|+.++. ++..++.+ .+...+||||||||+.
T Consensus 96 ~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~ 125 (204)
T cd03240 96 NVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLAS 125 (204)
T ss_pred ceeeec---hHHHHHHH--------------------hcCccccCccHHHHHH
Confidence 998763 22222222 5566799999999964
No 384
>KOG0065|consensus
Probab=98.84 E-value=2.4e-09 Score=131.46 Aligned_cols=120 Identities=28% Similarity=0.512 Sum_probs=87.5
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC----------eEEEEeccCc-CCCccH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG----------SIAFVPQQAW-IQNATL 750 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g----------~Iayv~Q~pw-L~ngTI 750 (950)
.-.+|+|++.-++||+++.+.||.||||||||++|.|..+.. .|+|..+| .++|++|+-+ +..-|+
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 346899999999999999999999999999999999998653 56788776 6999999754 567899
Q ss_pred HHHHhcCC--CCChhHHHHHHHH---hcCCc---hhhhCCCCCcccccCCCC-CCCHHHhhcc
Q psy16196 751 RDNIVFGK--THVPRRYNKVIDA---CALTP---DFEMLPAGDSTEIGEKGI-NLSGGQKQRV 804 (950)
Q Consensus 751 reNIlfg~--~~d~~~y~~Vi~a---c~L~~---Di~~Lp~Gd~T~IGe~G~-~LSGGQKQRI 804 (950)
||-+-|.. ..+..||+++-+. |+..+ -+=.|....||.||.+.+ ..|||||-||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRv 269 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRV 269 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCccccee
Confidence 99999842 1111122211111 11100 122356678899998755 4999999999
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.82 E-value=1.7e-09 Score=116.20 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC--------C------------eEEEEeccC--cCCCccHHHHHh--
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--------G------------SIAFVPQQA--WIQNATLRDNIV-- 755 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~--------g------------~Iayv~Q~p--wL~ngTIreNIl-- 755 (950)
.+++|+||+|||||||+.+|.+.+.+..|++... | .+.|..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999998877655655321 1 244444432 233344444321
Q ss_pred --cCCCCChhHHHHHHHHhcCCchhhh--CCCCCcccccCCC---------CCCCHHHhhcccHH
Q psy16196 756 --FGKTHVPRRYNKVIDACALTPDFEM--LPAGDSTEIGEKG---------INLSGGQKQRVKWQ 807 (950)
Q Consensus 756 --fg~~~d~~~y~~Vi~ac~L~~Di~~--Lp~Gd~T~IGe~G---------~~LSGGQKQRI~~~ 807 (950)
-|++.+++.|+++++.|++..|... .++|+-+.+.+.. .+||||||||+...
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la 167 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALA 167 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHH
Confidence 1456678899999999999766432 5788888886654 78999999999544
No 386
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.75 E-value=3.4e-09 Score=114.13 Aligned_cols=109 Identities=25% Similarity=0.338 Sum_probs=71.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccC-CeeEeC----------------CeEEEEeccCc----------CCCccHH
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKIS-GRVNTK----------------GSIAFVPQQAW----------IQNATLR 751 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~-G~I~i~----------------g~Iayv~Q~pw----------L~ngTIr 751 (950)
..+++||||+|||||||+.+|.+.+.+.. |++... .+|.++.|++- ...-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999998887653 344432 17899999862 1246888
Q ss_pred HHHhcCCC---------CChhHHHHHHHHhcCCch-hh-hCCCCCc-------ccccCCCCCCCHHHhhcccHH
Q psy16196 752 DNIVFGKT---------HVPRRYNKVIDACALTPD-FE-MLPAGDS-------TEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 752 eNIlfg~~---------~d~~~y~~Vi~ac~L~~D-i~-~Lp~Gd~-------T~IGe~G~~LSGGQKQRI~~~ 807 (950)
+||..+.. ...++..+.++.+++..| .. ..++|.= .....+...||||||||+...
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 88866532 122455566666766422 00 1222221 233456779999999999654
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.74 E-value=2.7e-08 Score=111.18 Aligned_cols=131 Identities=26% Similarity=0.472 Sum_probs=98.9
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------- 734 (950)
...++++|.+..=+. +.+.++||||+|+.||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~~~--------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~ 326 (501)
T COG3845 255 EVVLEVEDLSVKDRR--------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL 326 (501)
T ss_pred CeEEEEeeeEeecCC--------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC
Confidence 346788888875322 35689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeccC----cCCCccHHHHHhcCCCCCh-------hHHHHHHHHh-cCCchhhhCCCCCcccccCCCC
Q psy16196 735 --------SIAFVPQQA----WIQNATLRDNIVFGKTHVP-------RRYNKVIDAC-ALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 --------~Iayv~Q~p----wL~ngTIreNIlfg~~~d~-------~~y~~Vi~ac-~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
.+||||.|. -+..-|+.||+.++.-.++ -+++++-+.+ .+-+.++.-+.|-.+.+ .
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a----~ 402 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA----R 402 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch----h
Confidence 479999886 4788999999998754332 1122222222 23333333356655544 5
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+||||+.||+
T Consensus 403 ~LSGGNqQK~ 412 (501)
T COG3845 403 SLSGGNQQKL 412 (501)
T ss_pred hcCCcceehh
Confidence 8999999999
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.71 E-value=1e-08 Score=98.64 Aligned_cols=107 Identities=27% Similarity=0.384 Sum_probs=78.5
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEecc-CcCCCccHHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQ-AWIQNATLRDN 753 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~-pwL~ngTIreN 753 (950)
-|-.+|.++..|+..=+|||.||||||||..+.|.. |-+|+|.++| +-||.+|+ .-.|-.-|-.-
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 477789999999999999999999999999999976 6799999998 46888876 44566677777
Q ss_pred HhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 754 IVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 754 Ilfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+....|. +++-.++-+.|.+-. .+-..|..-..||||+=|||
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~L~--------l~DKL~Rs~~qLSGGEWQRV 134 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGALA--------LDDKLGRSTNQLSGGEWQRV 134 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhhhc--------ccchhhhhhhhcCcccceee
Confidence 7777774 333334444443211 11122334467999999999
No 389
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.68 E-value=4.7e-09 Score=108.38 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccH--HHHH----hcCCCCChhHHHHHHHHhcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATL--RDNI----VFGKTHVPRRYNKVIDACAL 774 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTI--reNI----lfg~~~d~~~y~~Vi~ac~L 774 (950)
+++|+||.|||||||++.+++++.+..|...+...+++..|.+|+.+.++ +||+ ..|.++...||+.+..+|+|
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999998876564555566777777777766552 4444 33577777899999999999
Q ss_pred CchhhhCCCCCcccccCCCCCCCHH
Q psy16196 775 TPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 775 ~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.+++..+|++|.+.|+..|.+||.-
T Consensus 83 ~~l~~~~~~~D~iiIEt~G~~l~~~ 107 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGGDNLSAT 107 (199)
T ss_pred HHHHhcCCCCCEEEEECCCCCcccc
Confidence 9888889999999999999877654
No 390
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.66 E-value=1.4e-09 Score=113.69 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCc-cHHHHHhcCCCCCh-
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA-TLRDNIVFGKTHVP- 762 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ng-TIreNIlfg~~~d~- 762 (950)
+..+++++++ ++++|+||+||||||++++|..-+-..-... -.++++|++|+...... |.++++.+......
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK 89 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCH
Confidence 3468888887 7999999999999999999972111000011 12468999999776543 77887766543211
Q ss_pred hHH---HHHHHH------hcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 763 RRY---NKVIDA------CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 763 ~~y---~~Vi~a------c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
+.+ .-..+. .+-..++..||++.++.+ ..||||||||+...
T Consensus 90 ~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la 139 (212)
T cd03274 90 PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLA 139 (212)
T ss_pred HHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHH
Confidence 000 000000 011124556788877765 47999999998654
No 391
>KOG0062|consensus
Probab=98.64 E-value=2.5e-08 Score=111.28 Aligned_cols=124 Identities=22% Similarity=0.317 Sum_probs=96.4
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEE
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFV 739 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv 739 (950)
.+.+.+.+|+|.|++ ++.+.+.++++++.--+.+++||+.|+||||+++.+.|+..|..|.+.+.+ +|+|-
T Consensus 360 ~p~l~i~~V~f~y~p-------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCC-------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecch
Confidence 357899999999987 233799999999999999999999999999999999999999999998886 79999
Q ss_pred eccCcCC-CccHHH-----HHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 740 PQQAWIQ-NATLRD-----NIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 740 ~Q~pwL~-ngTIre-----NIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|-..=+ +-.+-. ----|. .++.|++-+..-+|..|+..-+ -.+||||||-||
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrv 491 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRV 491 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHH
Confidence 9964322 111111 111133 4677888888888887776432 146999999999
No 392
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.63 E-value=2.5e-08 Score=106.04 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=74.4
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHH---hcCCCCCh---hHHH-
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNI---VFGKTHVP---RRYN- 766 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNI---lfg~~~d~---~~y~- 766 (950)
+.+.+||.++|+||.|+|||||++.|.+.+....+.+.+ +.|+.+++-.--..+.+.| ++..+.|+ .++.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~---~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL---IVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE---EEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHH
Confidence 468899999999999999999999999998876544432 4565666533222334444 12222222 1222
Q ss_pred --HHHHHh------c-----CCchhhhCCCCCcccccCCCCCCCHHH--------hhccc
Q psy16196 767 --KVIDAC------A-----LTPDFEMLPAGDSTEIGEKGINLSGGQ--------KQRVK 805 (950)
Q Consensus 767 --~Vi~ac------~-----L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ--------KQRI~ 805 (950)
.+.+.+ + +-+++..+++++++++|+.|.++|||| |||+.
T Consensus 88 ~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~ 147 (249)
T cd01128 88 AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFG 147 (249)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHH
Confidence 111111 1 135789999999999999999999999 99994
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.60 E-value=6.5e-08 Score=106.29 Aligned_cols=105 Identities=23% Similarity=0.373 Sum_probs=76.8
Q ss_pred cccceeEE-----eeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc-CcCCCccHHHHHhcCCC--
Q psy16196 688 TLQNINMR-----VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ-AWIQNATLRDNIVFGKT-- 759 (950)
Q Consensus 688 vL~~Inl~-----i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~-pwL~ngTIreNIlfg~~-- 759 (950)
.+.+..|+ |..||.++|+||.|-||||+++.|.|++.|++|+ ..+=+|+|=||- .--++|||++=+.--.+
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSA 429 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCCcHHHHHHHhhhhh
Confidence 34444554 4568899999999999999999999999999998 555689999995 22489999997654322
Q ss_pred CChhHHH-HHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 760 HVPRRYN-KVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 760 ~d~~~y~-~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+...+|+ ++++--.|++-++ .+-.+||||+-|||
T Consensus 430 ~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRv 464 (591)
T COG1245 430 FGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRV 464 (591)
T ss_pred cccchhHHhhcCccchHHHHh-----------cccccCCchhHHHH
Confidence 4555553 4444444443333 34457999999999
No 394
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.59 E-value=5.6e-08 Score=105.38 Aligned_cols=113 Identities=27% Similarity=0.420 Sum_probs=77.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--------cccCCeeEeCCe-E-EEEec--cCcCCCccHHH
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--------DKISGRVNTKGS-I-AFVPQ--QAWIQNATLRD 752 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--------~~~~G~I~i~g~-I-ayv~Q--~pwL~ngTIre 752 (950)
...+|+|+||+|++|+.++|||++||||||++..|+|+. .|++|.|.+.-+ + |.+|- ||-+-.-||-|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 347899999999999999999999999999999999874 688888887532 1 23332 34444446666
Q ss_pred HHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 753 NIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 753 NIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
.+ +..+-|..--.+++.-.+|.+-+ .--.+=..||-|||-|.+.+
T Consensus 475 hl-~s~tGD~~~AveILnraGlsDAv---------lyRr~f~ELStGQKeR~KLA 519 (593)
T COG2401 475 HL-RSKTGDLNAAVEILNRAGLSDAV---------LYRRKFSELSTGQKERAKLA 519 (593)
T ss_pred HH-hhccCchhHHHHHHHhhccchhh---------hhhccHhhcCcchHHHHHHH
Confidence 54 33344433445677777764321 11122346999999998654
No 395
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.57 E-value=4.3e-08 Score=110.62 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=43.3
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC-eeEeCCe
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-RVNTKGS 735 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G-~I~i~g~ 735 (950)
..+|+|||++|++||+++|+||+||||||||+ .|...|.+| +|.++|.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 35899999999999999999999999999999 677778888 7999983
No 396
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.55 E-value=4.7e-08 Score=121.43 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=31.4
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
.|+|+|++|++|++++|+|++|||||||++-++
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999875
No 397
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.53 E-value=1.3e-07 Score=108.08 Aligned_cols=111 Identities=27% Similarity=0.499 Sum_probs=83.6
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------------eEEEEecc----CcCCCcc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------------SIAFVPQQ----AWIQNAT 749 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------------~Iayv~Q~----pwL~ngT 749 (950)
.++|+||++++||.++|.|=+|||+|=|+++|.|--++.+|+|.++| .|+|||-| --+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 58999999999999999999999999999999998888999999998 39999986 4577889
Q ss_pred HHHHHhcCC--------CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 750 LRDNIVFGK--------THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 750 IreNIlfg~--------~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++||.+.. ..+..+.+++.+. ..++++.=..+.+..| .+||||-+|+|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s~~~~v----~~LSGGNQQKV 410 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPSPEQPI----GTLSGGNQQKV 410 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCCccchh----hcCCchhhhhH
Confidence 999998761 1233333333222 2222332233333444 47999999998
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.51 E-value=4.6e-08 Score=99.26 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhh
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFE 779 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~ 779 (950)
.+++|+||+|||||+++.||.=-+- |+-...+.- ++ .+. +++.|..|..... |. ...+.++.
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~---~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~-----v~--~~f~~~~~ 84 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLG---GKAAKLRRG----SL-LFL---AGGGVKAGINSAS-----VE--ITFDKSYF 84 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC---cccccccCc----ch-hhh---cccccCCCCceEE-----EE--EEEECceE
Confidence 3999999999999999999843211 111100000 00 000 1122222221100 00 11234488
Q ss_pred hCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 780 MLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 780 ~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
.+|+|+.|+| ||||||||+...
T Consensus 85 ~~~~~~~~~~------LS~Ge~~r~~La 106 (178)
T cd03239 85 LVLQGKVEQI------LSGGEKSLSALA 106 (178)
T ss_pred EecCCcCccc------CCHHHHHHHHHH
Confidence 9999999999 999999998654
No 399
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=4.3e-07 Score=112.81 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=36.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
.++++|++. ..|+|+||+|++|++++|+|++|||||||++-.+
T Consensus 612 ~l~l~~~~~--------------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l 654 (924)
T TIGR00630 612 FLTLKGARE--------------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTL 654 (924)
T ss_pred eEEEEeCcc--------------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 577887752 2599999999999999999999999999998544
No 400
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.40 E-value=8.7e-07 Score=98.70 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=56.9
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCccc-----------ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQ-----------NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~-----------~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~ 731 (950)
+.+.|+|++|.|++ +.++|+ |+++.|.+||.++||||+|||||||++.|.+.+....-.+.
T Consensus 129 ~ri~Fe~LTf~YP~--------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~ 200 (415)
T TIGR00767 129 NRVLFENLTPLYPN--------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVE 200 (415)
T ss_pred CCeEEEEeeecCCC--------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceE
Confidence 46999999999986 457886 99999999999999999999999999999998865422222
Q ss_pred eCCeEEEEeccC
Q psy16196 732 TKGSIAFVPQQA 743 (950)
Q Consensus 732 i~g~Iayv~Q~p 743 (950)
+ +.++.+++
T Consensus 201 v---~VlLIgER 209 (415)
T TIGR00767 201 L---IVLLIDER 209 (415)
T ss_pred E---EEEEcCCC
Confidence 2 55666554
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.35 E-value=4.6e-07 Score=117.66 Aligned_cols=30 Identities=33% Similarity=0.667 Sum_probs=29.4
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVS 717 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~ 717 (950)
.|+|+|++|++|++++|+|++|||||||++
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 699999999999999999999999999999
No 402
>PRK12369 putative transporter; Reviewed
Probab=98.30 E-value=0.0028 Score=70.40 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHH
Q psy16196 304 YFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGIL 381 (950)
Q Consensus 304 ~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~l 381 (950)
..+...+++.+-|..|...+.++=+..+. ..++ .=.+++.|+++ .+ .......+..+++.++.-+.+||..-
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~iDN-----PDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS 156 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRNKRD-NIEG-----SSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLS 156 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCC-----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445678899999999999999887542 1222 23688999999 54 44556677788888888888898855
Q ss_pred hH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHhHHHH--HHHhhhhHHhhhccH-HHHHH
Q psy16196 382 GP------------SVLAGLAVMVILIPVNGYVATRIRNLQI-KQMKSKDARVKLMN--EVLSGIKVLKLYAWE-LSFQE 445 (950)
Q Consensus 382 g~------------~~l~gl~~~~~~~p~~~~~~~~~~~~~~-~~~~~~d~Rv~~~~--E~L~gIk~IK~~~~E-~~f~~ 445 (950)
|. ...+.++..++...+..++++++.+..- +...+.|=|-+++. |.=++ | -| +.+.+
T Consensus 157 ~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~ 229 (326)
T PRK12369 157 DGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIE 229 (326)
T ss_pred CCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHH
Confidence 32 2233333444445555666666554432 22334455554432 11111 1 22 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 446 QILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQL 525 (950)
Q Consensus 446 ~i~~~R~~El~~~~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~ 525 (950)
+..++++.-.+..++...+..+........+++..++. +-.+.. +.++-+..--+-..|+.+...+..+.+.+..+
T Consensus 230 ~f~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~--aP~y~s--g~i~lG~l~Q~~~AF~~v~~als~~v~~y~~l 305 (326)
T PRK12369 230 LFTGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIM--APGLFA--GVITLGVLMQISNAFSQVRSSFSVFIRNWTTI 305 (326)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHh--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555445555444444444433333322222221 222222 34666666666677889999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy16196 526 VQASVSVKRINSFMN 540 (950)
Q Consensus 526 ~~a~~s~~RI~~fL~ 540 (950)
.+-.++.+|+.+|.+
T Consensus 306 a~~~A~~~RL~~f~~ 320 (326)
T PRK12369 306 TELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999964
No 403
>KOG0927|consensus
Probab=98.29 E-value=9.7e-07 Score=99.38 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=52.0
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
..|.++|.++++.+ .+.++|..|++.+|+..+++|+.||||||+|++|-|--.|..-++
T Consensus 74 ~dvk~~sls~s~~g---------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred ccceeeeeeeccCC---------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 46899999999864 578999999999999999999999999999999998777755444
No 404
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.25 E-value=1.4e-06 Score=90.20 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=27.0
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.+++++++.+| +++|+||+|||||||+.+|.-
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI 43 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence 35667777777 889999999999999999863
No 405
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.23 E-value=1e-06 Score=90.30 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=42.2
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
..+=+.+.+++|+.++|+||+|||||||+++|+|++++..|.|.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 45556678999999999999999999999999999999999988865
No 406
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.22 E-value=0.0055 Score=69.55 Aligned_cols=214 Identities=13% Similarity=0.080 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhH
Q psy16196 306 DRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGP 383 (950)
Q Consensus 306 ~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~ 383 (950)
+...++..+-|..|.....++=++++ ..+ ..=.+++.|+++ .+ .......+..+++.++.-+.+||...|.
T Consensus 160 ~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~ 232 (409)
T PRK11098 160 FFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAH 232 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34557789999999999998877664 112 145788999999 44 4455667788888888888888886553
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHhHHHH--HHHhhhhHHhhhccHH-HHHHH
Q psy16196 384 -------------SVLAGLAVMVILIPVNGYVATRIRNLQIKQ-MKSKDARVKLMN--EVLSGIKVLKLYAWEL-SFQEQ 446 (950)
Q Consensus 384 -------------~~l~gl~~~~~~~p~~~~~~~~~~~~~~~~-~~~~d~Rv~~~~--E~L~gIk~IK~~~~E~-~f~~~ 446 (950)
...+.++..++...+..+++++..+..-+. ..+.|=|-+++. |.=+ .-|+ ...++
T Consensus 233 l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~ 304 (409)
T PRK11098 233 VPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVREL 304 (409)
T ss_pred cccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHH
Confidence 122333334444445556666655543322 223444444331 1111 1232 35555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 447 ILKIRSKEIKVLKEAAYLNAATSFIWS---CAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLIS 523 (950)
Q Consensus 447 i~~~R~~El~~~~~~~~l~~~~~~~~~---~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~ 523 (950)
..+.|+.-.+..++..+++........ +.|.++ . +-.+.. +.++-+..-.+...|+.++..+..+.+...
T Consensus 305 F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv---~--aP~y~a--G~ItlG~l~Q~~~AF~~V~~als~~v~sy~ 377 (409)
T PRK11098 305 FSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFL---L--FPSIVA--GTITLGLMTQITNVFGQVRGSFQYLINSWT 377 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHc--CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555555544443333 334332 1 222222 346666666666788899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCc
Q psy16196 524 QLVQASVSVKRINSFMNQ 541 (950)
Q Consensus 524 ~~~~a~~s~~RI~~fL~~ 541 (950)
.+.+-.+..+|+.+|.+.
T Consensus 378 ~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 378 TIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999753
No 407
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.19 E-value=0.0033 Score=64.94 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=124.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 235 GALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMR 314 (950)
Q Consensus 235 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 314 (950)
+.++|.|++++.....+.+...++..+.|++++..||-+-+++ .+....|+++.++.-++ ......|- .|+-.|
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~--~~~~~~~~~~~l~~~~i-gaaRR~~D---TRvf~r 75 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGD--VWQALMYAALVLLMWAI-GAARRIYD---TRVFSR 75 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHH-hhhhHHHh---hHHHHH
Confidence 5788999999999999999999999999999999999876543 23333343333322222 22222222 255568
Q ss_pred HHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc--cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 315 MRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR--MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 315 ~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r--~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
++..+...++.+--+ ++.+.+++..+. +..| .|+ -..++.+..+.++++.++.+|...--|..++.+++
T Consensus 76 Iy~~la~~vi~~qr~------~~~~~S~i~ARv--~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~ 147 (237)
T PF13748_consen 76 IYAELAVPVILSQRQ------QGLSVSTIAARV--ALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLI 147 (237)
T ss_pred HHHHHhHHHHHHHHH------hCCChhHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888886655332 223344555554 2233 333 34567788899999988888766555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLK 459 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~ 459 (950)
++++..+...+.++..+...+.++..+++++.++. +-.....+..+.+++-+++.+-
T Consensus 148 l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~~-----------~~~~~l~rHy~~L~~lrI~lSD 204 (237)
T PF13748_consen 148 LALFLLILPRFARRNYRLYRRLNNRLEKEVDIIER-----------RKPASLRRHYRRLSRLRIRLSD 204 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhhc-----------CChHHHHHHHHHHHhhhhhhch
Confidence 55555556667777766666666666666654321 2233445555556655555443
No 408
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.17 E-value=0.0021 Score=70.41 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16196 249 SSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKAL 328 (950)
Q Consensus 249 ~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 328 (950)
+++.++.+.++......-+.+.+.+++.+.+. -+-.++..++..+..+++.....|...++..+.|.-|...+.++-+
T Consensus 33 l~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~--f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl 110 (281)
T PF06472_consen 33 LLLLLARVYLSVRINFWNGDFYNALQQKDLQA--FWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYL 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666666666777777776543211 1112222223333334444444555678899999999999999987
Q ss_pred cccccccCCCC---hhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Q psy16196 329 TISNNARKETT---VGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVL-AGLAVMVILIPVNGYV 402 (950)
Q Consensus 329 ~l~~~~~~~~~---~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l-~gl~~~~~~~p~~~~~ 402 (950)
+=..-+.-... ....=.+++.|+++ .+ .......+...++.++...+.||...|+..+ +.++..++...+..++
T Consensus 111 ~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~i 190 (281)
T PF06472_consen 111 SNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWI 190 (281)
T ss_pred CCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 65532221111 22345699999999 44 5566777888889999999999999887655 4444455555666677
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHH
Q psy16196 403 ATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILK 449 (950)
Q Consensus 403 ~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~ 449 (950)
++...+...+..+.-.+--.....+.++-..|-+|+-|+.-.+++++
T Consensus 191 g~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~ 237 (281)
T PF06472_consen 191 GPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDR 237 (281)
T ss_pred hhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHH
Confidence 77777666555544444444556777888889999888765555443
No 409
>PRK01889 GTPase RsgA; Reviewed
Probab=98.09 E-value=3e-06 Score=95.51 Aligned_cols=87 Identities=23% Similarity=0.356 Sum_probs=69.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------eEEEEeccCcCCCccHHHHHhcCC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------SIAFVPQQAWIQNATLRDNIVFGK 758 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----------~Iayv~Q~pwL~ngTIreNIlfg~ 758 (950)
++.+.-.+++|+.++++|++|+|||||+++|+|+..+..|+|..++ ++.+++|.+++++..-..|+.+..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~ 264 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWD 264 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcccC
Confidence 5666667889999999999999999999999999999999998763 689999999999988888877765
Q ss_pred CCCh-----hHHHHHHHHhcCC
Q psy16196 759 THVP-----RRYNKVIDACALT 775 (950)
Q Consensus 759 ~~d~-----~~y~~Vi~ac~L~ 775 (950)
+.+. ....++.+.|...
T Consensus 265 ~~~~l~~~f~~~~~~~~~c~f~ 286 (356)
T PRK01889 265 AEDGVEETFSDIEELAAQCRFR 286 (356)
T ss_pred chhhHHHhHHHHHHHHccCCCC
Confidence 4321 2344555566543
No 410
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.06 E-value=2e-06 Score=89.00 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=68.9
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-cCCeeEeCCeEEEEeccC-cCCCccHHHHHhcCCCCCh
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTKGSIAFVPQQA-WIQNATLRDNIVFGKTHVP 762 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-~~G~I~i~g~Iayv~Q~p-wL~ngTIreNIlfg~~~d~ 762 (950)
++++++|++++. |+.++|+||+|||||||++.|.|.... ..|. .+.+ -.++.|.. -+.+.|++||+.+|.....
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a-~~~~~q~~~l~~~~~~~d~l~~~~s~~~ 88 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCA-SSFELPPVKIFTSIRVSDDLRDGISYFY 88 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEec-CccCcccceEEEeccchhccccccChHH
Confidence 346888887775 799999999999999999999876532 1232 2222 13455533 3456699999998864322
Q ss_pred hHHHHHHHHhcCCchhhhCC--CCCcccccCCCCCCCHHHhhcccHHHH
Q psy16196 763 RRYNKVIDACALTPDFEMLP--AGDSTEIGEKGINLSGGQKQRVKWQVY 809 (950)
Q Consensus 763 ~~y~~Vi~ac~L~~Di~~Lp--~Gd~T~IGe~G~~LSGGQKQRI~~~vy 809 (950)
+..+++-++. +.+. +-.--.+.|-+..|+-..++++.+.+.
T Consensus 89 ~e~~~~~~iL------~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll 131 (199)
T cd03283 89 AELRRLKEIV------EKAKKGEPVLFLLDEIFKGTNSRERQAASAAVL 131 (199)
T ss_pred HHHHHHHHHH------HhccCCCCeEEEEecccCCCCHHHHHHHHHHHH
Confidence 2222222221 1111 333445567666777666655544443
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.06 E-value=7.5e-06 Score=106.71 Aligned_cols=34 Identities=41% Similarity=0.514 Sum_probs=31.7
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
.-|+||+++||-|.+++|+|.+|||||||++-.|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l 1537 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGF 1537 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHH
Confidence 3599999999999999999999999999998776
No 412
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.99 E-value=3.9e-06 Score=94.26 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=66.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCccc--CC-eeEe-C--------C---eEEEEeccCc-----CCCccHHHHHhc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKI--SG-RVNT-K--------G---SIAFVPQQAW-----IQNATLRDNIVF 756 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~--~G-~I~i-~--------g---~Iayv~Q~pw-----L~ngTIreNIlf 756 (950)
++|.+++|+||+||||||++++|++++... .| .|.. . + ..++|.|... -|..+||+++..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 589999999999999999999999998532 33 4422 1 1 3577888643 466777777653
Q ss_pred -------CCCCChhHHHHHHHHhcCCc-hhhhCCCCCcccccCCCCC-CCHHHhhcc
Q psy16196 757 -------GKTHVPRRYNKVIDACALTP-DFEMLPAGDSTEIGEKGIN-LSGGQKQRV 804 (950)
Q Consensus 757 -------g~~~d~~~y~~Vi~ac~L~~-Di~~Lp~Gd~T~IGe~G~~-LSGGQKQRI 804 (950)
|+--|.+..+.+++|+.--+ -+..+-..+-...=+|-.+ +|||||.-+
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 44446677777777753211 1233333332222233222 667766544
No 413
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.97 E-value=2.5e-05 Score=89.07 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=52.7
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+.++.++++..+.. ...+++.++ +|.+||.++|+||+|||||||++.|.|..+++.|.|..
T Consensus 138 ~~~~r~~v~~~l~T--------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 138 PAMTRARVETGLRT--------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred CCeEeecceEEcCC--------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 46778888877764 456888886 99999999999999999999999999999999887765
No 414
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.92 E-value=7e-06 Score=85.71 Aligned_cols=44 Identities=20% Similarity=0.494 Sum_probs=38.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ng 748 (950)
|+|++++|+||+|||||||+++|.+.+++ +.+++++|+.+..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccccccCh
Confidence 68999999999999999999999998764 457889999987654
No 415
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.92 E-value=7.6e-06 Score=84.94 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=29.4
Q ss_pred ccceeEEeeCCe-EEEEEcCCCCChhHHHHHHc
Q psy16196 689 LQNINMRVREGT-LVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 689 L~~Inl~i~~G~-lvaIVG~vGSGKSTLL~aLL 720 (950)
..++||++.+|+ .++|+||.|||||||++.|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 557899999995 79999999999999999998
No 416
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.90 E-value=1.1e-05 Score=83.45 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=51.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCccc-CCeeEe-C--------CeEEEEec-----cCcCCCccHHHHHhcCCC------
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKI-SGRVNT-K--------GSIAFVPQ-----QAWIQNATLRDNIVFGKT------ 759 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~-~G~I~i-~--------g~Iayv~Q-----~pwL~ngTIreNIlfg~~------ 759 (950)
+++|+||+||||||++++|+++++.. .|.|.. . +...++.| ++.-|...++.++...-+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 78999999999999999999999754 455432 2 23355666 345567778888776433
Q ss_pred -CChhHHHHHHHHhc
Q psy16196 760 -HVPRRYNKVIDACA 773 (950)
Q Consensus 760 -~d~~~y~~Vi~ac~ 773 (950)
-|++..+.+++++.
T Consensus 83 ird~e~~~~~l~~a~ 97 (198)
T cd01131 83 MRDLETIRLALTAAE 97 (198)
T ss_pred CCCHHHHHHHHHHHH
Confidence 36666666777664
No 417
>KOG0062|consensus
Probab=97.90 E-value=1.8e-05 Score=89.00 Aligned_cols=120 Identities=23% Similarity=0.401 Sum_probs=74.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC---CCcccCCeeEeCCeEEEE
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG---EMDKISGRVNTKGSIAFV 739 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG---e~~~~~G~I~i~g~Iayv 739 (950)
..|...|.+.+|.. +..|++-++++.+|-..++|||.|+||||||++|.. ..-+++-++ .|---+.
T Consensus 79 ~Di~~~~fdLa~G~---------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~--~g~~t~~ 147 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV--RGDDTEA 147 (582)
T ss_pred cceeeeeeeeeecc---------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe--eccchHH
Confidence 46888888888863 578999999999999999999999999999999987 111211111 1100000
Q ss_pred eccCcCCCccHHHHHhcCCCC------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 740 PQQAWIQNATLRDNIVFGKTH------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 740 ~Q~pwL~ngTIreNIlfg~~~------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.| .-+-.+|-|.-.+.-.+- -++-|.+++.--+-.+|.+..|-+ +||||=|-|+
T Consensus 148 ~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~----------slSGGWrMrl 207 (582)
T KOG0062|consen 148 LQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTK----------SLSGGWRMRL 207 (582)
T ss_pred Hh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcccc----------ccCcchhhHH
Confidence 11 122233333333332210 012244455555556666666643 7999999998
No 418
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.86 E-value=1.6e-05 Score=83.18 Aligned_cols=31 Identities=39% Similarity=0.635 Sum_probs=24.5
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
+++.++..+| +++|+|++|||||||+.+|.-
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~ 45 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICL 45 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455665555 889999999999999999843
No 419
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.85 E-value=3.2e-05 Score=91.39 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=29.0
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHH
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVS 717 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~ 717 (950)
.-|+|||.+||-|.+++|+|-+|||||||++
T Consensus 615 nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn 645 (935)
T COG0178 615 NNLKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 (935)
T ss_pred cCcccceeecccccEEEEEecCCCCHHHhHH
Confidence 3499999999999999999999999999993
No 420
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.78 E-value=3.5e-05 Score=80.58 Aligned_cols=65 Identities=20% Similarity=0.431 Sum_probs=47.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCc---cH--HHHHhcCCC--CChhHHHHHH
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA---TL--RDNIVFGKT--HVPRRYNKVI 769 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ng---TI--reNIlfg~~--~d~~~y~~Vi 769 (950)
+++.+++|+|++|||||||.+.|.+.+. .+++++++|+.+..+. +. +.++.|+.+ +|.+...+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 75 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--------DESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHL 75 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--------CCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHH
Confidence 4788999999999999999999999872 3568999999998755 33 344455544 3334444433
No 421
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.74 E-value=1.6e-05 Score=82.94 Aligned_cols=60 Identities=33% Similarity=0.547 Sum_probs=43.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc------------ccCCeeEeCC-eEEE---------EeccCcCCCccHHHHH
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD------------KISGRVNTKG-SIAF---------VPQQAWIQNATLRDNI 754 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~------------~~~G~I~i~g-~Iay---------v~Q~pwL~ngTIreNI 754 (950)
++|++++|+||+|||||||++.|.+.++ |..|++ +| ...+ ..|..+++.+|+.+|.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV--DGVDYFFVSKEEFEEMIENGEFLEWAEVFGNY 80 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc--CCCeeEEcCHHHHHHHHHcCCcEEEEEECCcc
Confidence 5899999999999999999999999985 556662 33 1222 2355667788887773
Q ss_pred hcCCC
Q psy16196 755 VFGKT 759 (950)
Q Consensus 755 lfg~~ 759 (950)
+|.+
T Consensus 81 -y~~~ 84 (205)
T PRK00300 81 -YGTP 84 (205)
T ss_pred -ccCc
Confidence 5543
No 422
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=97.74 E-value=0.00012 Score=78.50 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHH
Q psy16196 887 VAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLC 947 (950)
Q Consensus 887 ~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~ 947 (950)
....+.+..+++++++++++++.|.+||++++.|+++||+++|++.+++.+...+..++..
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~ 125 (275)
T PF00664_consen 65 SSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISS 125 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccc
Confidence 3466779999999999999999999999999999999999999999999888777666544
No 423
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.73 E-value=3.4e-05 Score=87.98 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee---EeCC-------------------eEEEEeccC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV---NTKG-------------------SIAFVPQQA 743 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I---~i~g-------------------~Iayv~Q~p 743 (950)
..+++++ |+|.+|++++|+|++|+|||||++.|.|..+++.+.+ -.+| .|+|++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4589999 9999999999999999999999999999988765322 2211 478888885
Q ss_pred c-CCCccHHHHHhc
Q psy16196 744 W-IQNATLRDNIVF 756 (950)
Q Consensus 744 w-L~ngTIreNIlf 756 (950)
- ...-++.+|..+
T Consensus 222 s~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 SPLMRIKATELCHA 235 (434)
T ss_pred ChhhhHHHHHHHHH
Confidence 4 446677888764
No 424
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.72 E-value=1.5e-05 Score=88.08 Aligned_cols=106 Identities=24% Similarity=0.341 Sum_probs=77.6
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe------------------------------CC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT------------------------------KG 734 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i------------------------------~g 734 (950)
+.+.|..+- ..++|+.++|+||.|-||||-++.|.||+.|.=|+-.- --
T Consensus 87 NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~ 165 (591)
T COG1245 87 NGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVH 165 (591)
T ss_pred CceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceec
Confidence 345555443 34689999999999999999999999999998775321 11
Q ss_pred eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++-||.--|-.+.|+++|=+.--.+ ...++++++.-+|+.-++. .-..||||+=||+
T Consensus 166 K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~L~nvl~r-----------~v~~LSGGELQr~ 222 (591)
T COG1245 166 KPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLGLENVLDR-----------DVSELSGGELQRV 222 (591)
T ss_pred chHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhcchhhhhh-----------hhhhcCchHHHHH
Confidence 4566666788999999997754322 2478899998887543321 2246999999999
No 425
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.71 E-value=0.00021 Score=88.68 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 823 AAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFL 902 (950)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~l 902 (950)
..+++.++...+..+..++...-.+.-.. ..+.......+.+++++.++..++..++...+...+.+...++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l 240 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGG----DKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDL 240 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555544432110 00111122234555556666667777777777788889999999999
Q ss_pred HHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHH
Q psy16196 903 LTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLC 947 (950)
Q Consensus 903 l~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~ 947 (950)
++++++.|++||+.+++|.++||+++|++.+++.+...+..++..
T Consensus 241 ~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~ 285 (711)
T TIGR00958 241 FRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRN 285 (711)
T ss_pred HHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877665554443
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.71 E-value=2.5e-05 Score=84.20 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
+-++|+||+|||||||+++|.|++.+.+|+|.++|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g 146 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG 146 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence 67999999999999999999999999999999887
No 427
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=1e-05 Score=93.45 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=65.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhc-CCCCChhHHHH
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVF-GKTHVPRRYNK 767 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlf-g~~~d~~~y~~ 767 (950)
+++.++.+++|+.+++|||+|+||||++.-|.+.+...+|.. +|+++++|+ +..+..||+.+ ++-+.-. ...
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt--~RigA~EQLr~~AeilGVp-v~~ 318 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDS--YRIGGHEQLRIYGKILGVP-VHA 318 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCc--cchhHHHHHHHHHHHhCCC-eec
Confidence 445556677899999999999999999999999887777643 578999998 66778999865 2211100 000
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
+-+...+...+..+.+.|...|..-|.
T Consensus 319 ~~~~~Dl~~aL~~L~d~d~VLIDTaGr 345 (484)
T PRK06995 319 VKDAADLRLALSELRNKHIVLIDTIGM 345 (484)
T ss_pred cCCchhHHHHHHhccCCCeEEeCCCCc
Confidence 000011112344556667777777554
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.65 E-value=5.3e-05 Score=61.69 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=25.5
Q ss_pred ceeEEeeC-CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 691 NINMRVRE-GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 691 ~Inl~i~~-G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
+-++++.+ |..+.|+||+|||||||+.|+.=.
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34566654 679999999999999999988543
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.65 E-value=4.4e-05 Score=84.67 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=38.7
Q ss_pred eeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC
Q psy16196 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733 (950)
Q Consensus 692 Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~ 733 (950)
+++.++.|+.++|+||+|||||||+++|++++++..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 678899999999999999999999999999999998877764
No 430
>PRK15494 era GTPase Era; Provisional
Probab=97.59 E-value=4.7e-05 Score=85.55 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=49.5
Q ss_pred CCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCe-------EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 661 FTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGT-------LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 661 ~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~-------lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..+.+++++++|.|+. .+++++++++++++|+ .++|+|+.|+|||||++.++|+-
T Consensus 15 ~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVREDA--------STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCCC--------CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3467899999999985 5679999999999999 99999999999999999999874
No 431
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00013 Score=79.58 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=25.2
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
+++.++++.+| +++|+||+||||||++.||-
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~ 42 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAIS 42 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556777676 79999999999999999873
No 432
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.53 E-value=0.00076 Score=82.20 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 823 AAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLG---VYGALGLGQVLSVLTSSICVAEGSLLASSVLH 899 (950)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~---vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH 899 (950)
+.+++.++...+.....+++.+..+.-.. + .......+++ +++++.++..++..++.......+.+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 101 (592)
T PRK10790 27 LAVLMLWVAAAAEVSGPLLISYFIDNMVA--K---GNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLR 101 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666667777776653210 0 0111111222 12233333334444455555566778889999
Q ss_pred HHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHH
Q psy16196 900 EFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWL 945 (950)
Q Consensus 900 ~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~ 945 (950)
.+++++++++|++||+..+.|+++||+++|++.+++.....+..++
T Consensus 102 ~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~ 147 (592)
T PRK10790 102 TDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVL 147 (592)
T ss_pred HHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987666554443
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.52 E-value=0.00011 Score=84.48 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=43.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+..+++++ +++++|+.++|+|++|+|||||++.|.|..++..|.|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~ 191 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIAL 191 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 34689999 999999999999999999999999999999999887766
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.50 E-value=7.9e-05 Score=78.17 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC-CCcccCCeeEeC--CeEEEEecc
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG-EMDKISGRVNTK--GSIAFVPQQ 742 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG-e~~~~~G~I~i~--g~Iayv~Q~ 742 (950)
+.++.+|+++.+.+|++++|+||+|+||||+++.+.+ ++.+..|..... -+++|.+|-
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 3578999999999999999999999999999999999 888888876543 256665553
No 435
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.38 E-value=0.00018 Score=75.51 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=52.5
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC-cccCCeeEe--CCeEEEEeccCcCCCccHHHHHhcCCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM-DKISGRVNT--KGSIAFVPQQAWIQNATLRDNIVFGKT 759 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~-~~~~G~I~i--~g~Iayv~Q~pwL~ngTIreNIlfg~~ 759 (950)
++.+.+|+++++++ ++++|+||+||||||+++.+.+.. ....|...- ..+++|+.|- ...-+++||+..|..
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i--~~~~~~~~~ls~g~s 91 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRI--FTRIGASDDLAGGRS 91 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeE--eccCCchhhhccCcc
Confidence 34689999999987 999999999999999999985422 112332211 2468888763 245688999998854
No 436
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.32 E-value=0.00013 Score=73.05 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=26.7
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCe
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~ 729 (950)
+.+.++.+++|+||.||||||+++++..-.-..+|.
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~ 51 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSA 51 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchh
Confidence 344455799999999999999999975544444443
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.31 E-value=0.00017 Score=74.86 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
+.++.+|+++++++|++++|+||+||||||+++.+.+.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999999998755
No 438
>KOG0058|consensus
Probab=97.29 E-value=0.0016 Score=76.89 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHH
Q psy16196 866 LGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWL 945 (950)
Q Consensus 866 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~ 945 (950)
..+-+++.++..++..+|..++-+.+-+...+|-..+++++++--+.|||.|-+|.+++|.|.|...+-+.++..+..++
T Consensus 191 ~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~l 270 (716)
T KOG0058|consen 191 CTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44555666777788888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHh
Q psy16196 946 LCLF 949 (950)
Q Consensus 946 ~~~~ 949 (950)
.++.
T Consensus 271 R~~~ 274 (716)
T KOG0058|consen 271 RNLV 274 (716)
T ss_pred HHHH
Confidence 6653
No 439
>PRK08149 ATP synthase SpaL; Validated
Probab=97.28 E-value=0.00025 Score=80.92 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=37.5
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~ 727 (950)
..+++++ +++.+||.++|+|++|+|||||++.|.|..+++.
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 4689999 9999999999999999999999999999877653
No 440
>PLN02796 D-glycerate 3-kinase
Probab=97.28 E-value=8.5e-05 Score=81.83 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCcccceeEEe---eCCeE-----EEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC
Q psy16196 686 PPTLQNINMRV---REGTL-----VAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG 734 (950)
Q Consensus 686 ~~vL~~Inl~i---~~G~l-----vaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g 734 (950)
..+++++++.+ ++|+. ++|+|++|||||||++.|.+++.+. .|.|.+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 35788888887 56665 9999999999999999999999764 35555554
No 441
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.25 E-value=0.00019 Score=75.72 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=25.7
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHH---cCC
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSAL---CGE 722 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aL---LGe 722 (950)
++..+.+.+ .+++|+||+||||||++.|| ||+
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~ 50 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGG 50 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345555554 49999999999999999999 564
No 442
>KOG0063|consensus
Probab=97.25 E-value=0.00066 Score=74.80 Aligned_cols=109 Identities=22% Similarity=0.345 Sum_probs=74.3
Q ss_pred CCCcccceeEEeeCCe-----EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC-cCCCccHHHHHhc--
Q psy16196 685 SPPTLQNINMRVREGT-----LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA-WIQNATLRDNIVF-- 756 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~-----lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p-wL~ngTIreNIlf-- 756 (950)
.+..+.+..|.|+.|+ .+...|..|-|||||++.+.|.++|++|.=.-.=+|+|=||.- -=+.+|+|.-.-=
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kI 427 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKI 427 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHh
Confidence 4567788888888875 5778999999999999999999999887322223699999962 2577888874310
Q ss_pred -CCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 757 -GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 757 -g~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
..-.++..-.+|++-- -.+-.++..-.+||||+.|||
T Consensus 428 r~ay~~pqF~~dvmkpL-----------~ie~i~dqevq~lSggelQRv 465 (592)
T KOG0063|consen 428 RDAYMHPQFVNDVMKPL-----------QIENIIDQEVQGLSGGELQRV 465 (592)
T ss_pred HhhhcCHHHHHhhhhhh-----------hHHHHHhHHhhcCCchhhHHH
Confidence 0111223333333332 223345566679999999999
No 443
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.23 E-value=0.0021 Score=78.01 Aligned_cols=123 Identities=15% Similarity=0.065 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 821 SMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHE 900 (950)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~ 900 (950)
+++.+++.++..++..+..++++...+.... . ........+.++++++.++..++..++.+.....+.+....+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~ 91 (571)
T TIGR02203 16 LVLAGVAMILVAATESTLAALLKPLLDDGFG--G--RDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRV 91 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--c--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555556666554443210 0 01111223344566666666667777777777888899999999
Q ss_pred HHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHH
Q psy16196 901 FLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLC 947 (950)
Q Consensus 901 ~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~ 947 (950)
.+++++++.|.++|+..+.|+++||++.|++.+++.+...+..++..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~ 138 (571)
T TIGR02203 92 RMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRE 138 (571)
T ss_pred HHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877665555543
No 444
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.21 E-value=2.7e-05 Score=94.69 Aligned_cols=29 Identities=38% Similarity=0.697 Sum_probs=25.2
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
++++| +.++||+||||||+.+++.++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 55667 899999999999999999998753
No 445
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.20 E-value=0.00049 Score=76.88 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=36.6
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
.-++.+..+.|+||+|||||||+++|++++++.++.+.+..
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 34778999999999999999999999999999888887764
No 446
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.00044 Score=71.61 Aligned_cols=42 Identities=14% Similarity=0.455 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccH
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATL 750 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTI 750 (950)
+++|+||+|||||||.+.|.+.+ . .+.+.+++++.+...-+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~------~~~~~v~~~D~~~~~~~~ 42 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--G------NPKVVIISQDSYYKDLSH 42 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--C------CCCeEEEEeccccccccc
Confidence 47999999999999999999987 1 245677888877644443
No 447
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.18 E-value=0.00033 Score=79.97 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=43.2
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
+..+++++ +++.+|+.++|+|++|+|||||++.|.|...++.|.+...|
T Consensus 142 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iG 190 (433)
T PRK07594 142 GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG 190 (433)
T ss_pred Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEEC
Confidence 45689999 99999999999999999999999999999988877655433
No 448
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.18 E-value=0.00038 Score=76.81 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
+..+++++ +.+.+|+.++|+|++|+|||||++.|.|...++.|.+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi 100 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI 100 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 34689999 9999999999999999999999999999998876544
No 449
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.17 E-value=0.00045 Score=72.67 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=47.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHH-h---cC--CCCChhHHHHHHHHhcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNI-V---FG--KTHVPRRYNKVIDACAL 774 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNI-l---fg--~~~d~~~y~~Vi~ac~L 774 (950)
+++|.|++|||||||++.|.+.+.+..+ ++++.+++++.+......++.. . .| ..+|.+.+.++++....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~----~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPD----HPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCC----CCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 4799999999999999999998875321 2467788898886554443332 1 23 23566667777666544
No 450
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.14 E-value=0.00035 Score=68.91 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+|+.++++|++|+|||||++.|++......|.|.-
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~ 68 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE 68 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence 45999999999999999999999998877777753
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.13 E-value=0.00018 Score=74.82 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=36.3
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc-CCCcccCCeeEe--CCeEEEEeccC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC-GEMDKISGRVNT--KGSIAFVPQQA 743 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL-Ge~~~~~G~I~i--~g~Iayv~Q~p 743 (950)
++..| +++.+|++++|+||.|||||||+++|. +.+....|...- ...++|+.|.-
T Consensus 19 ~~~~~--~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~ 76 (202)
T cd03243 19 FVPND--INLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIF 76 (202)
T ss_pred eEeee--EEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEE
Confidence 44444 455589999999999999999999998 333333443221 13456655543
No 452
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.11 E-value=0.00037 Score=70.61 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
+|+.++|+|++|||||||+++|.|.+.+ +.++|
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~g 34 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDG 34 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECC
Confidence 6999999999999999999999998865 45555
No 453
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.10 E-value=0.00064 Score=78.17 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=42.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+..+++++ +.+.+|+.++|+|++|+|||||++.|.|...++.|.+..
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 178 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL 178 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 34689999 999999999999999999999999999999988776644
No 454
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.09 E-value=0.00028 Score=80.73 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc------CcCCCccHHHHHhcCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ------AWIQNATLRDNIVFGK 758 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~------pwL~ngTIreNIlfg~ 758 (950)
+..+++++ |.+.+|++++|+|++|+|||||++.|.|..+++ +.+.|.|+.-..+ ..+-.+.+..++++..
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d---v~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~a 230 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD---IIVVGLIGERGREVKEFIEHILGEEGLKRSVVVAS 230 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEE
Confidence 34689999 999999999999999999999999999987653 4444433332222 1122233333444444
Q ss_pred CCCh---hHHHHHHHHhcCCchhh
Q psy16196 759 THVP---RRYNKVIDACALTPDFE 779 (950)
Q Consensus 759 ~~d~---~~y~~Vi~ac~L~~Di~ 779 (950)
.-|+ +++....-|+...+-+.
T Consensus 231 tsd~~p~~r~~a~~~a~aiAEyfr 254 (451)
T PRK05688 231 PADDAPLMRLRAAMYCTRIAEYFR 254 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4333 55666666666555444
No 455
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.09 E-value=0.00038 Score=81.13 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC------eEEEEeccCcCCC-ccHHHHH
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------SIAFVPQQAWIQN-ATLRDNI 754 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------~Iayv~Q~pwL~n-gTIreNI 754 (950)
-+++|.||+|||||||++.|.+.+ +..|.|..+| .+.|..|+|..++ .++.+|+
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL 126 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNI 126 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecchhhhCccCCChhhcchhHHHHHH
Confidence 589999999999999999999997 4577888876 2455666666654 2555555
No 456
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.08 E-value=0.00048 Score=73.08 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~ 731 (950)
+..+++|+||+|||||||++.|.+.+.+..|.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~ 65 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPA 65 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCce
Confidence 5689999999999999999999999999988743
No 457
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.03 E-value=0.00057 Score=79.86 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=45.9
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
..+++++++.+..|+.++++||+|||||||++.|.|.+++.+|++.+++
T Consensus 197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 4689999999999999999999999999999999999999999987764
No 458
>PTZ00035 Rad51 protein; Provisional
Probab=96.99 E-value=0.00027 Score=79.00 Aligned_cols=75 Identities=17% Similarity=0.353 Sum_probs=54.3
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCc-c-----cCCee-EeCC-------eEEEEeccCcCCCccHHHHHhcCCCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMD-K-----ISGRV-NTKG-------SIAFVPQQAWIQNATLRDNIVFGKTH 760 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-~-----~~G~I-~i~g-------~Iayv~Q~pwL~ngTIreNIlfg~~~ 760 (950)
=+++|+++.|+|+.|||||||+..++.... | ..|.+ ++++ ++..++|..-+...++.+||.+.+++
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 478999999999999999999998876554 2 34554 5543 24444555556666899999999998
Q ss_pred ChhHHHHHH
Q psy16196 761 VPRRYNKVI 769 (950)
Q Consensus 761 d~~~y~~Vi 769 (950)
+.+...+.+
T Consensus 194 ~~e~~~~~l 202 (337)
T PTZ00035 194 NHEHQMQLL 202 (337)
T ss_pred CHHHHHHHH
Confidence 865444433
No 459
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.99 E-value=0.0081 Score=72.54 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 821 SMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHE 900 (950)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~ 900 (950)
+++.+++.++...+..+.-+.++.+.+.... . . ...+..++++.++..++..+..+.....+.+....+..
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~------~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 90 (555)
T TIGR01194 20 TAFSIALGLAGGLAIIALLASINNAIHEENF------L-G--QGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRI 90 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------c-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555556666677777643210 0 0 01233344555555566666666666777788999999
Q ss_pred HHHHHHHcCccccccccccccccccccCchHHhhhhh
Q psy16196 901 FLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAI 937 (950)
Q Consensus 901 ~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~L 937 (950)
++++++++.|+.||++.+.|++++|+++|++.+++.+
T Consensus 91 ~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~ 127 (555)
T TIGR01194 91 ALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFL 127 (555)
T ss_pred HHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999998755
No 460
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.98 E-value=0.00052 Score=70.35 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
|+.++|+||+|||||||++.|.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998764
No 461
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.96 E-value=0.00036 Score=87.38 Aligned_cols=29 Identities=41% Similarity=0.682 Sum_probs=28.1
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
=|||||++||++++|+|+|++|||||||.
T Consensus 15 NLKni~v~iP~~~l~v~TGvSGSGKSSLa 43 (943)
T PRK00349 15 NLKNIDLDIPRDKLVVFTGLSGSGKSSLA 43 (943)
T ss_pred cccccccccCCCceEEEecCCCCCchhHH
Confidence 39999999999999999999999999997
No 462
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.96 E-value=0.00085 Score=76.69 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~ 731 (950)
..+++++ +++.+|+.++|+|++|+|||||++.|.+..+++.|.+.
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~ 169 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIA 169 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEE
Confidence 4579999 99999999999999999999999999999988776543
No 463
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.0005 Score=71.24 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=31.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCccc-CCeeEeCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKI-SGRVNTKG 734 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-~G~I~i~g 734 (950)
++|++++|+|++|||||||.++|.+.+.+. .|.+.++|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 578999999999999999999999977543 35677765
No 464
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.00023 Score=79.92 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=48.6
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNI 754 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNI 754 (950)
.+++++.++.+++|+.++++||+|+||||++..|.+.+....|. .+|+++..+.+-. .-.|++
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----~~V~lit~D~~R~--ga~EqL 186 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----SKVALLTTDSYRI--GGHEQL 186 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----CeEEEEecccccc--cHHHHH
Confidence 35677888899999999999999999999999999876443342 3588888887633 334555
No 465
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.95 E-value=0.00037 Score=87.18 Aligned_cols=29 Identities=45% Similarity=0.711 Sum_probs=28.0
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
=|||||++||++++|+|+|++|||||||.
T Consensus 11 NLKni~v~iP~~~l~v~TGvSGSGKSSLa 39 (924)
T TIGR00630 11 NLKNIDVEIPRDKLVVITGLSGSGKSSLA 39 (924)
T ss_pred cccccccccCCCceEEEecCCCCCchhHH
Confidence 49999999999999999999999999997
No 466
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.94 E-value=0.00089 Score=76.81 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=41.8
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+..+++++ +++.+|+.++|+|++|+|||||++.|.|...++.|.+..
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~ 196 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIAL 196 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEE
Confidence 34689999 999999999999999999999999999999887766544
No 467
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.94 E-value=0.0079 Score=74.99 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=78.8
Q ss_pred cHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy16196 805 KWQVYLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSS 884 (950)
Q Consensus 805 ~~~vy~~Y~~~~G~~~~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~ 884 (950)
++.-++.|++..... ....+++.++.+++.....++++.+.+.-.. + ........+..+++++.++..++..++.
T Consensus 143 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (708)
T TIGR01193 143 SLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIP--H--KMMGTLGIISIGLIIAYIIQQILSYIQI 217 (708)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c--CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666643222 2233334455555566666777766654220 0 0001111222333334444555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhh
Q psy16196 885 ICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNA 936 (950)
Q Consensus 885 ~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~ 936 (950)
+.....+.+...++..++++++++.|++||+..++|.++||++ |.+.+-+.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~ 268 (708)
T TIGR01193 218 FLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDA 268 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHH
Confidence 7777778889999999999999999999999999999999999 66655443
No 468
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.93 E-value=0.00094 Score=73.30 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=49.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC---C-------------eEEEEeccCcC-----CC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK---G-------------SIAFVPQQAWI-----QN 747 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~---g-------------~Iayv~Q~pwL-----~n 747 (950)
++.+...++ ++.++++|++|+|||||+++|+|+..+..|++... | ..+|+.++|-+ ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444554 58999999999999999999999999988888641 2 25688888876 34
Q ss_pred ccHHHHHhc
Q psy16196 748 ATLRDNIVF 756 (950)
Q Consensus 748 gTIreNIlf 756 (950)
.+..|..-+
T Consensus 231 ~~~~~~~~~ 239 (287)
T cd01854 231 IDPEELAHY 239 (287)
T ss_pred CCHHHHHHH
Confidence 555554433
No 469
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.90 E-value=0.0007 Score=77.32 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~ 733 (950)
.++ |.+|++.+|+.++|+|++|+|||||++.|.|..+++.|.|...
T Consensus 129 ~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~i 174 (418)
T TIGR03498 129 RVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALV 174 (418)
T ss_pred EEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEE
Confidence 345 5799999999999999999999999999999999988766543
No 470
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.90 E-value=0.00067 Score=65.32 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+.+++|||+|||||||+++|.|+-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999975
No 471
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.88 E-value=0.0073 Score=72.58 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHH
Q psy16196 865 YLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIK 942 (950)
Q Consensus 865 yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~ 942 (950)
+++++.+++++..++..++.+.....+.+...++..++++++++.|.+||+..++|+++||+++|++.+++.+-..+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~ 123 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLP 123 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555556666666666666777889999999999999999999999999999999999999999976544333
No 472
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.87 E-value=0.013 Score=70.83 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhh
Q psy16196 869 YGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNA 936 (950)
Q Consensus 869 Y~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~ 936 (950)
++++.++..++..+..+.....+.+...++..++++++++.|++||+..++|.++||+++|++.+...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~ 121 (547)
T PRK10522 54 FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIA 121 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHH
Confidence 33333333444555666666677789999999999999999999999999999999999999998864
No 473
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.001 Score=70.13 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
..++.+|+++++++|++++|+||+||||||+++.+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 457899999999999999999999999999999986
No 474
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.84 E-value=0.0008 Score=68.44 Aligned_cols=27 Identities=48% Similarity=0.667 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
|++++|+||+|||||||++.|.+.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 789999999999999999999997643
No 475
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.83 E-value=0.00093 Score=76.40 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~ 731 (950)
..+++++ +++.+|+.++|+|++|+|||||+++|.+..+...+.|.
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~ 189 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVA 189 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEE
Confidence 3478999 99999999999999999999999999998876655544
No 476
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.82 E-value=0.0014 Score=65.54 Aligned_cols=59 Identities=25% Similarity=0.468 Sum_probs=47.0
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE-----e-----------------CCeEEEEeccC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN-----T-----------------KGSIAFVPQQA 743 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~-----i-----------------~g~Iayv~Q~p 743 (950)
..+.+++|++...||+-++||.+|||||-+.++|.|-..- +=.|. . ...|++..|+|
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 3578999999999999999999999999999999997531 21222 1 12699999998
Q ss_pred cC
Q psy16196 744 WI 745 (950)
Q Consensus 744 wL 745 (950)
--
T Consensus 99 ~s 100 (330)
T COG4170 99 QS 100 (330)
T ss_pred hh
Confidence 63
No 477
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.82 E-value=0.00085 Score=77.32 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=39.7
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
..+++++ +++.+|+.++|+|++|+|||||++.|.|..++..|.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 194 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI 194 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 4689888 9999999999999999999999999999998876544
No 478
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.81 E-value=0.0018 Score=65.66 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=38.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTH 760 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~ 760 (950)
++|++++++|+.||||||+.+.|.+.+....+.+. ++. .+.+|+++..+-.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~------~id------~D~~~~~~~~~~~~ 53 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVE------VLD------GDAVRTNLSKGLGF 53 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE------EEc------CccHHHHHhcCCCC
Confidence 58999999999999999999999999875544443 222 23567777655444
No 479
>PRK06315 type III secretion system ATPase; Provisional
Probab=96.80 E-value=0.0012 Score=75.75 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=62.8
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC-CeeEeCC-------------------eEEEE-----ec
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS-GRVNTKG-------------------SIAFV-----PQ 741 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~-G~I~i~g-------------------~Iayv-----~Q 741 (950)
.+++++ +++.+|+.++|+|++|||||||++.|+|..+..+ |.|...| +.+++ .|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 467777 9999999999999999999999999999985433 5554422 35555 88
Q ss_pred cCcC------CCccHHHHHhc-CCC-----CChhHHHHHHHHhcCC
Q psy16196 742 QAWI------QNATLRDNIVF-GKT-----HVPRRYNKVIDACALT 775 (950)
Q Consensus 742 ~pwL------~ngTIreNIlf-g~~-----~d~~~y~~Vi~ac~L~ 775 (950)
+|.. .-.+|.|.+.. |.. .+..+|.++++.++|.
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7642 34467777643 322 1346778888888773
No 480
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.80 E-value=0.0013 Score=75.04 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=36.1
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC---CeeEeCC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS---GRVNTKG 734 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~---G~I~i~g 734 (950)
+++.+|+.++|+|++|+|||||++.|.|..++.. |.|-.+|
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg 213 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERG 213 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECC
Confidence 9999999999999999999999999999998864 5555554
No 481
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.80 E-value=0.0021 Score=70.07 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCc--ccCCeeEeCCeEEEEeccCcCCCccHHHHH
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMD--KISGRVNTKGSIAFVPQQAWIQNATLRDNI 754 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~--~~~G~I~i~g~Iayv~Q~pwL~ngTIreNI 754 (950)
.++||.||+||||||+++.|.+.+. +.+| .+..++++.+...-..++.+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g------~V~vi~~D~f~~~~~~l~~~ 113 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHR------KVELITTDGFLHPNQVLKER 113 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCC------ceEEEecccccccHHHHHHc
Confidence 5999999999999999999988876 4444 46677888877765665543
No 482
>PRK07261 topology modulation protein; Provisional
Probab=96.77 E-value=0.00051 Score=69.32 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.++|+|++|||||||.+.|...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 483
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.77 E-value=0.0011 Score=68.05 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.9
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
+|+++++..+++++ +|+|+.|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 58899999887766 9999999999999999987
No 484
>PRK00098 GTPase RsgA; Reviewed
Probab=96.77 E-value=0.0012 Score=72.96 Aligned_cols=35 Identities=29% Similarity=0.628 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+|+.++++|++|+|||||+++|+|+..+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 59999999999999999999999999999998864
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.74 E-value=0.0011 Score=67.27 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
|++++|+||+|||||||++.|.+.+... |.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~ 31 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRV 31 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcE
Confidence 6789999999999999999998887543 433
No 486
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.72 E-value=0.015 Score=70.89 Aligned_cols=78 Identities=8% Similarity=0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHH
Q psy16196 866 LGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKS 943 (950)
Q Consensus 866 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~ 943 (950)
+.+++++.++..++..++.+.....+.+....+-.++++++++.|++||+..++|.++||+++|++.+++.+...+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~ 143 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQ 143 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444555555566666666677888899999999999999999999999999999999999999866544433
No 487
>PRK05922 type III secretion system ATPase; Validated
Probab=96.67 E-value=0.002 Score=73.70 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=40.0
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
.+++.+ +++.+|+.++|+|++|+|||||++.|.|..++..|.+..
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~l 190 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIAL 190 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEE
Confidence 456665 999999999999999999999999999999988887754
No 488
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.67 E-value=0.0025 Score=66.72 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=67.2
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc--CCCcccCCeeEeC--CeEEEEeccCcCC--CccHHHHHhcCCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC--GEMDKISGRVNTK--GSIAFVPQQAWIQ--NATLRDNIVFGKT 759 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL--Ge~~~~~G~I~i~--g~Iayv~Q~pwL~--ngTIreNIlfg~~ 759 (950)
.+|-+|+++.=..+..++|+||.|+||||||+.+. +.+ ...|..... .+++|..|.---+ +.|+.+++ .
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~----S 90 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQ----S 90 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhcc----c
Confidence 35566666643223899999999999999999997 333 445655432 4789999974433 23555554 2
Q ss_pred CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHHHHHHHHH
Q psy16196 760 HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQVYLHYLK 814 (950)
Q Consensus 760 ~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~vy~~Y~~ 814 (950)
.-....+++..++++.. +..--.+.|=|..+.--+.+.+.+++..+..+
T Consensus 91 ~f~~el~~l~~~l~~~~------~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 91 AFMIDLYQVSKALRLAT------RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred hHHHHHHHHHHHHHhCC------CCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 22234455555554422 22333445555555433333344444444433
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.66 E-value=0.0011 Score=64.12 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+++|+||+|||||||++.|.++++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4789999999999999999999864
No 490
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.65 E-value=0.0018 Score=74.05 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCCCCChhHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRY 765 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y 765 (950)
..++++ .+.+.+|+.++|+|++|+|||||++.|.|+.+++.|. |+++.|.. -+++|.+..
T Consensus 144 iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gv------I~~iGerg----~ev~e~~~~--------- 203 (432)
T PRK06793 144 IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINV------ISLVGERG----REVKDFIRK--------- 203 (432)
T ss_pred CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEE------EEeCCCCc----ccHHHHHHH---------
Confidence 346766 4999999999999999999999999999999887764 44555554 456655431
Q ss_pred HHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc--HHHHHHHHHhcCh
Q psy16196 766 NKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK--WQVYLHYLKSIGL 818 (950)
Q Consensus 766 ~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~--~~vy~~Y~~~~G~ 818 (950)
.+..-+++ .|.|=-.-.+-|.|+|+|+. -.....||+..|.
T Consensus 204 --~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 204 --ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred --Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11111111 11222334677999999993 3456788888774
No 491
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.60 E-value=0.018 Score=70.12 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHH
Q psy16196 866 LGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSW 944 (950)
Q Consensus 866 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~ 944 (950)
+.+++++.++..+...++.+.....+-+....+...+++++++.|.++|+....|+++||+++|++.+++.....+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~ 139 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMA 139 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555566666666778899999999999999999999999999999999999999988765554443
No 492
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.60 E-value=0.019 Score=69.91 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHH
Q psy16196 897 VLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCI 941 (950)
Q Consensus 897 ~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~ 941 (950)
.+-.++++++++.|..+|+..+.|++++|+++|++.+.+.....+
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~ 134 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFM 134 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344589999999999999999999999999999998876443333
No 493
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.56 E-value=0.0021 Score=73.31 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=34.3
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.+++.+ +++.+|+.++|+|++|+|||||++.|.|..++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~ 188 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTA 188 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCC
Confidence 467666 99999999999999999999999999998765
No 494
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.55 E-value=0.022 Score=69.21 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHH
Q psy16196 893 LASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCI 941 (950)
Q Consensus 893 ~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~ 941 (950)
+....+.+++++++++.|++||+..++|.+++|+++|++.+.......+
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~ 134 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFM 134 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555699999999999999999999999999999999986544333
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.001 Score=80.66 Aligned_cols=53 Identities=21% Similarity=0.446 Sum_probs=42.7
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pw 744 (950)
++++.++.+++|+.+++|||+|+||||.+.-|.+.+...+|. .+|+++..|++
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----kkV~lit~Dt~ 226 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----DQLALLTTDSF 226 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----CeEEEecCccc
Confidence 566777778889999999999999999999999988666652 14677777754
No 496
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.53 E-value=0.0024 Score=72.98 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=38.2
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCe
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~ 729 (950)
..+++.+ +++.+|+.++|+|++|+|||||++.|.|...+..|.
T Consensus 125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~v 167 (411)
T TIGR03496 125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVV 167 (411)
T ss_pred EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3578888 999999999999999999999999999998876543
No 497
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.51 E-value=0.003 Score=60.33 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccC-CeeEeC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKIS-GRVNTK 733 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~-G~I~i~ 733 (950)
+|..++|+||+||||||+++.|++.+.... +-+.++
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 467899999999999999999999987765 344444
No 498
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.47 E-value=0.0017 Score=65.07 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcccC---CeeEe
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKIS---GRVNT 732 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~~---G~I~i 732 (950)
.+++|+|++|||||||+..|++++.... |.|..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 4899999999999999999999986532 55544
No 499
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.46 E-value=0.0021 Score=66.19 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=25.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
++++++++.+| +++|+||+|+||||++.+|.
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHH
Confidence 46677777776 99999999999999999884
No 500
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.43 E-value=0.0033 Score=63.20 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC----CcccCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE----MDKISG 728 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe----~~~~~G 728 (950)
-.++|+|+.|||||||++.+.|. +.++.|
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 46999999999999999999997 556666
Done!