Query psy16196
Match_columns 950
No_of_seqs 512 out of 3357
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:12:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.6E-75 5.4E-80 756.2 59.1 529 307-948 159-881 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2.2E-58 7.7E-63 594.8 50.4 591 240-947 45-835 (1284)
3 4a82_A Cystic fibrosis transme 100.0 3E-56 1E-60 533.6 45.5 456 234-804 5-486 (578)
4 3qf4_A ABC transporter, ATP-bi 100.0 9.7E-55 3.3E-59 520.5 49.2 456 233-804 13-488 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 2E-55 6.7E-60 528.1 43.1 453 236-804 30-500 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 3.9E-53 1.4E-57 507.4 56.7 453 234-804 16-489 (582)
7 3b60_A Lipid A export ATP-bind 100.0 6.5E-53 2.2E-57 505.5 52.8 453 234-804 16-489 (582)
8 2yl4_A ATP-binding cassette SU 100.0 3.5E-52 1.2E-56 500.5 53.6 457 234-804 10-492 (595)
9 4f4c_A Multidrug resistance pr 100.0 3.3E-51 1.1E-55 529.3 42.4 454 241-804 750-1226(1321)
10 3g5u_A MCG1178, multidrug resi 100.0 4.2E-43 1.5E-47 452.7 43.8 458 236-804 698-1180(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.7E-33 5.7E-38 307.1 10.0 134 663-804 52-199 (306)
12 2pze_A Cystic fibrosis transme 100.0 2.3E-29 7.7E-34 265.0 14.4 134 664-804 6-139 (229)
13 2cbz_A Multidrug resistance-as 100.0 3.9E-29 1.3E-33 264.5 13.4 134 664-804 3-136 (237)
14 2ff7_A Alpha-hemolysin translo 99.9 1.8E-27 6.1E-32 253.2 13.7 135 663-804 6-154 (247)
15 1mv5_A LMRA, multidrug resista 99.9 1.8E-27 6.3E-32 252.9 13.4 132 665-804 2-148 (243)
16 2ghi_A Transport protein; mult 99.9 1E-26 3.5E-31 249.2 13.5 135 663-804 16-164 (260)
17 3gd7_A Fusion complex of cysti 99.9 3.2E-26 1.1E-30 257.4 13.8 134 663-804 18-164 (390)
18 2bbs_A Cystic fibrosis transme 99.9 3.4E-26 1.2E-30 248.2 11.0 130 663-804 39-168 (290)
19 2ixe_A Antigen peptide transpo 99.9 9.5E-26 3.3E-30 243.1 14.1 136 663-804 15-165 (271)
20 3gfo_A Cobalt import ATP-bindi 99.9 3.8E-23 1.3E-27 222.5 11.0 122 664-804 7-152 (275)
21 3tif_A Uncharacterized ABC tra 99.9 4.4E-23 1.5E-27 217.7 10.5 125 665-804 2-154 (235)
22 1ji0_A ABC transporter; ATP bi 99.9 6E-23 2.1E-27 217.5 11.0 126 664-804 6-148 (240)
23 1sgw_A Putative ABC transporte 99.9 8.6E-23 2.9E-27 211.6 11.5 120 663-804 9-142 (214)
24 2nq2_C Hypothetical ABC transp 99.9 9.7E-23 3.3E-27 217.3 11.7 122 664-804 4-137 (253)
25 2yz2_A Putative ABC transporte 99.9 2E-22 6.9E-27 216.7 12.8 123 665-804 3-147 (266)
26 3fvq_A Fe(3+) IONS import ATP- 99.9 1.4E-22 4.6E-27 224.6 11.7 121 664-804 4-147 (359)
27 2pcj_A ABC transporter, lipopr 99.9 9E-23 3.1E-27 213.9 9.2 121 664-804 4-149 (224)
28 4g1u_C Hemin import ATP-bindin 99.9 2.4E-22 8.3E-27 215.7 12.6 124 663-806 10-152 (266)
29 3rlf_A Maltose/maltodextrin im 99.9 1.3E-22 4.3E-27 226.4 9.4 121 664-804 3-142 (381)
30 2olj_A Amino acid ABC transpor 99.9 2.6E-22 8.9E-27 214.8 11.3 121 664-804 24-168 (263)
31 3tui_C Methionine import ATP-b 99.9 2.1E-22 7.1E-27 223.1 10.1 126 663-804 23-172 (366)
32 1vpl_A ABC transporter, ATP-bi 99.9 4.4E-22 1.5E-26 212.3 11.9 122 663-804 14-155 (256)
33 2yyz_A Sugar ABC transporter, 99.9 4.5E-22 1.5E-26 221.3 12.4 121 664-804 3-142 (359)
34 1z47_A CYSA, putative ABC-tran 99.9 3.1E-22 1.1E-26 222.0 10.8 123 663-804 13-154 (355)
35 1g6h_A High-affinity branched- 99.9 3.9E-22 1.3E-26 213.5 10.1 121 664-804 7-162 (257)
36 2it1_A 362AA long hypothetical 99.9 3.4E-22 1.2E-26 222.4 9.5 121 664-804 3-142 (362)
37 1b0u_A Histidine permease; ABC 99.9 3.3E-22 1.1E-26 214.4 9.0 121 664-804 6-162 (262)
38 1v43_A Sugar-binding transport 99.9 6.8E-22 2.3E-26 220.9 11.4 121 664-804 11-150 (372)
39 3d31_A Sulfate/molybdate ABC t 99.9 5E-22 1.7E-26 220.2 10.3 119 665-804 2-136 (348)
40 1oxx_K GLCV, glucose, ABC tran 99.9 6.6E-22 2.3E-26 220.1 11.0 121 664-804 3-149 (353)
41 2onk_A Molybdate/tungstate ABC 99.9 7.4E-22 2.5E-26 208.6 10.4 117 665-804 2-135 (240)
42 2ihy_A ABC transporter, ATP-bi 99.9 5.9E-22 2E-26 214.1 9.5 121 664-804 21-170 (279)
43 2qi9_C Vitamin B12 import ATP- 99.8 3.3E-21 1.1E-25 204.6 13.4 117 664-805 4-136 (249)
44 2pjz_A Hypothetical protein ST 99.8 1.3E-21 4.5E-26 209.3 9.5 122 665-804 2-137 (263)
45 1g29_1 MALK, maltose transport 99.8 2.1E-21 7.2E-26 217.4 10.4 120 665-804 4-148 (372)
46 2v9p_A Replication protein E1; 99.8 2.3E-24 8E-29 234.0 -15.0 105 665-803 102-208 (305)
47 2d2e_A SUFC protein; ABC-ATPas 99.8 3.6E-21 1.2E-25 205.2 6.9 122 664-804 3-152 (250)
48 2zu0_C Probable ATP-dependent 99.8 3.2E-20 1.1E-24 199.6 10.7 122 663-804 19-173 (267)
49 3bk7_A ABC transporter ATP-bin 99.7 7.6E-17 2.6E-21 192.0 9.2 121 663-804 356-480 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.7 7.5E-17 2.6E-21 190.1 8.0 121 663-804 286-410 (538)
51 3ozx_A RNAse L inhibitor; ATP 99.6 1.5E-16 5.2E-21 186.9 9.6 121 663-804 268-394 (538)
52 2iw3_A Elongation factor 3A; a 99.6 2E-16 6.9E-21 194.4 10.1 85 664-755 671-762 (986)
53 3bk7_A ABC transporter ATP-bin 99.6 2.7E-15 9.4E-20 178.6 8.5 115 668-804 95-237 (607)
54 3j16_B RLI1P; ribosome recycli 99.5 5.4E-15 1.8E-19 175.7 8.7 118 668-804 350-476 (608)
55 1yqt_A RNAse L inhibitor; ATP- 99.5 6.1E-15 2.1E-19 173.8 6.9 115 668-804 25-167 (538)
56 1z6g_A Guanylate kinase; struc 99.5 2E-15 6.8E-20 157.6 -2.3 98 688-806 12-133 (218)
57 2gza_A Type IV secretion syste 99.5 6.3E-16 2.2E-20 173.6 -8.1 130 666-804 137-296 (361)
58 2f1r_A Molybdopterin-guanine d 99.4 1.7E-15 5.8E-20 151.1 -4.7 85 700-804 3-112 (171)
59 3aez_A Pantothenate kinase; tr 99.4 4.1E-15 1.4E-19 163.1 -3.3 115 662-804 41-185 (312)
60 2iw3_A Elongation factor 3A; a 99.4 2.4E-13 8.3E-18 167.2 10.8 120 663-804 434-557 (986)
61 2npi_A Protein CLP1; CLP1-PCF1 99.4 4E-15 1.4E-19 171.4 -7.7 109 689-808 128-248 (460)
62 3j16_B RLI1P; ribosome recycli 99.4 4.8E-13 1.6E-17 159.0 7.4 116 669-804 82-230 (608)
63 3ozx_A RNAse L inhibitor; ATP 99.3 2.8E-13 9.6E-18 159.2 5.0 114 669-804 4-147 (538)
64 2eyu_A Twitching motility prot 99.3 7.2E-14 2.5E-18 149.4 -1.8 114 687-804 15-179 (261)
65 2ewv_A Twitching motility prot 99.3 1.3E-13 4.6E-18 155.1 -0.1 115 686-804 125-290 (372)
66 3ux8_A Excinuclease ABC, A sub 99.3 5.5E-13 1.9E-17 162.2 2.9 74 685-758 30-160 (670)
67 3sop_A Neuronal-specific septi 99.3 1.4E-13 4.6E-18 148.0 -4.6 92 701-804 4-107 (270)
68 2jeo_A Uridine-cytidine kinase 99.2 8.6E-13 3E-17 140.2 -1.2 107 685-805 11-126 (245)
69 1tq4_A IIGP1, interferon-induc 99.2 6.1E-13 2.1E-17 150.4 -2.8 105 686-805 36-166 (413)
70 3ux8_A Excinuclease ABC, A sub 99.2 7.8E-12 2.7E-16 152.1 6.5 36 685-720 334-369 (670)
71 3b85_A Phosphate starvation-in 99.2 1.1E-12 3.8E-17 135.1 -0.8 60 686-757 13-83 (208)
72 1odf_A YGR205W, hypothetical 3 99.1 1.2E-12 4.2E-17 141.9 -3.7 105 697-804 29-143 (290)
73 3pih_A Uvrabc system protein A 99.1 3.1E-11 1.1E-15 148.6 7.5 31 686-716 597-627 (916)
74 1lw7_A Transcriptional regulat 99.1 3.1E-13 1.1E-17 152.4 -10.4 121 688-808 157-309 (365)
75 2dpy_A FLII, flagellum-specifi 99.1 3.5E-13 1.2E-17 154.3 -10.6 86 663-757 130-238 (438)
76 1htw_A HI0065; nucleotide-bind 99.1 1.3E-11 4.5E-16 121.3 1.1 71 686-757 20-99 (158)
77 2vf7_A UVRA2, excinuclease ABC 99.1 8.5E-11 2.9E-15 143.5 7.9 54 663-730 501-562 (842)
78 3c8u_A Fructokinase; YP_612366 99.1 2.7E-12 9.3E-17 132.7 -4.8 95 696-805 19-121 (208)
79 4gp7_A Metallophosphoesterase; 99.0 3.6E-11 1.2E-15 120.2 0.6 34 691-724 1-34 (171)
80 2rcn_A Probable GTPase ENGC; Y 99.0 4.2E-11 1.4E-15 132.6 0.7 116 688-814 205-339 (358)
81 3asz_A Uridine kinase; cytidin 99.0 1.8E-10 6.1E-15 119.1 4.6 93 696-804 3-102 (211)
82 2ygr_A Uvrabc system protein A 99.0 4.9E-10 1.7E-14 137.4 8.0 44 663-720 646-689 (993)
83 4aby_A DNA repair protein RECN 99.0 1.9E-10 6.5E-15 131.9 4.1 68 688-756 50-169 (415)
84 2r6f_A Excinuclease ABC subuni 99.0 2.8E-10 9.7E-15 139.0 5.7 44 663-720 628-671 (972)
85 1e69_A Chromosome segregation 98.9 3.1E-10 1.1E-14 125.4 3.4 116 691-807 17-231 (322)
86 2pt7_A CAG-ALFA; ATPase, prote 98.9 2.4E-10 8.3E-15 126.3 0.0 48 688-735 160-207 (330)
87 1ye8_A Protein THEP1, hypothet 98.9 1.1E-10 3.8E-15 117.2 -2.8 79 701-807 2-88 (178)
88 2obl_A ESCN; ATPase, hydrolase 98.8 6.9E-10 2.4E-14 123.2 1.1 63 663-734 44-106 (347)
89 1tf7_A KAIC; homohexamer, hexa 98.8 2.1E-11 7.3E-16 144.0 -12.0 60 685-744 24-98 (525)
90 2oap_1 GSPE-2, type II secreti 98.8 1.8E-09 6E-14 126.0 3.3 69 686-755 247-327 (511)
91 1p9r_A General secretion pathw 98.8 4.2E-10 1.4E-14 127.8 -2.1 45 687-733 157-201 (418)
92 2qag_B Septin-6, protein NEDD5 98.8 1.3E-09 4.6E-14 122.9 1.8 84 665-761 17-110 (427)
93 2yv5_A YJEQ protein; hydrolase 98.7 1.9E-09 6.4E-14 117.8 1.8 62 694-757 160-245 (302)
94 3b9q_A Chloroplast SRP recepto 98.7 1.9E-09 6.4E-14 117.5 1.3 69 689-757 90-179 (302)
95 1zp6_A Hypothetical protein AT 98.7 1.8E-09 6.2E-14 109.5 0.2 59 695-756 5-74 (191)
96 2i3b_A HCR-ntpase, human cance 98.7 1.6E-09 5.4E-14 109.8 -0.7 82 699-805 1-93 (189)
97 2qnr_A Septin-2, protein NEDD5 98.7 7.3E-10 2.5E-14 121.0 -4.3 99 686-804 11-122 (301)
98 2og2_A Putative signal recogni 98.6 4.7E-09 1.6E-13 116.6 1.5 68 690-757 148-236 (359)
99 2yhs_A FTSY, cell division pro 98.6 7.7E-09 2.6E-13 118.2 1.5 69 689-757 283-371 (503)
100 1znw_A Guanylate kinase, GMP k 98.6 4.5E-09 1.5E-13 108.3 -0.7 70 684-755 7-86 (207)
101 1lvg_A Guanylate kinase, GMP k 98.6 1.5E-09 5E-14 111.2 -4.5 87 697-789 2-111 (198)
102 1u0l_A Probable GTPase ENGC; p 98.6 1.6E-08 5.5E-13 110.4 2.9 81 694-775 164-281 (301)
103 1sq5_A Pantothenate kinase; P- 98.5 2.2E-09 7.7E-14 117.7 -5.6 82 663-756 36-151 (308)
104 3szr_A Interferon-induced GTP- 98.5 6.3E-09 2.2E-13 124.4 -3.0 83 664-756 10-120 (608)
105 3euj_A Chromosome partition pr 98.5 4.3E-08 1.5E-12 112.6 2.8 47 687-734 18-64 (483)
106 1s96_A Guanylate kinase, GMP k 98.5 6.5E-09 2.2E-13 107.9 -3.8 64 694-757 11-90 (219)
107 1t9h_A YLOQ, probable GTPase E 98.4 5.3E-08 1.8E-12 105.7 2.7 61 694-755 168-248 (307)
108 4a74_A DNA repair and recombin 98.4 2.6E-08 8.8E-13 104.0 0.1 68 695-762 21-102 (231)
109 2qm8_A GTPase/ATPase; G protei 98.4 1.4E-08 4.7E-13 112.7 -2.3 61 687-747 43-120 (337)
110 1rj9_A FTSY, signal recognitio 98.3 9.8E-08 3.3E-12 103.9 2.1 60 698-757 101-180 (304)
111 1nij_A Hypothetical protein YJ 98.3 6.7E-09 2.3E-13 114.4 -7.8 61 699-759 4-104 (318)
112 3kta_A Chromosome segregation 98.3 1.3E-07 4.5E-12 94.9 2.2 110 690-804 18-162 (182)
113 3lnc_A Guanylate kinase, GMP k 98.3 9.7E-08 3.3E-12 100.0 1.3 37 687-723 15-52 (231)
114 1pzn_A RAD51, DNA repair and r 98.3 4.7E-08 1.6E-12 108.8 -1.7 83 687-769 118-215 (349)
115 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 2.2E-07 7.4E-12 104.2 3.0 31 689-720 14-44 (365)
116 3jvv_A Twitching mobility prot 98.3 4.8E-07 1.6E-11 100.6 5.5 98 668-772 92-218 (356)
117 2qag_C Septin-7; cell cycle, c 98.3 1.3E-07 4.5E-12 107.2 0.3 83 663-760 10-102 (418)
118 2x8a_A Nuclear valosin-contain 98.2 8.3E-09 2.8E-13 111.1 -9.3 45 686-734 33-77 (274)
119 1in4_A RUVB, holliday junction 98.2 4.5E-08 1.5E-12 108.6 -3.8 69 686-755 31-123 (334)
120 4e22_A Cytidylate kinase; P-lo 98.2 7.5E-08 2.6E-12 102.3 -2.1 65 688-755 19-114 (252)
121 1pui_A ENGB, probable GTP-bind 98.2 2.5E-07 8.6E-12 94.9 1.8 56 665-732 4-64 (210)
122 3e70_C DPA, signal recognition 98.2 3.3E-07 1.1E-11 100.7 2.1 63 695-757 125-207 (328)
123 1nlf_A Regulatory protein REPA 98.2 1.1E-06 3.8E-11 94.7 5.4 95 695-804 26-127 (279)
124 3tr0_A Guanylate kinase, GMP k 98.2 4.2E-07 1.4E-11 92.9 1.8 59 693-755 1-73 (205)
125 3qf4_B Uncharacterized ABC tra 98.2 3.9E-06 1.3E-10 100.4 10.4 123 821-947 39-161 (598)
126 1ewq_A DNA mismatch repair pro 98.1 4.7E-07 1.6E-11 110.1 1.6 85 663-759 549-637 (765)
127 1cke_A CK, MSSA, protein (cyti 98.1 1.3E-07 4.3E-12 98.6 -4.0 95 699-799 5-131 (227)
128 2o8b_B DNA mismatch repair pro 98.1 3.2E-07 1.1E-11 115.1 -1.5 75 663-755 749-836 (1022)
129 1tf7_A KAIC; homohexamer, hexa 98.1 1.1E-06 3.9E-11 103.4 3.1 87 693-804 275-362 (525)
130 3ney_A 55 kDa erythrocyte memb 98.1 4.1E-07 1.4E-11 92.1 -0.9 73 694-771 14-109 (197)
131 3nwj_A ATSK2; P loop, shikimat 98.0 4.6E-07 1.6E-11 95.7 -1.4 52 664-723 17-72 (250)
132 1kgd_A CASK, peripheral plasma 98.0 4E-07 1.4E-11 91.4 -1.8 69 698-770 4-94 (180)
133 3qf4_A ABC transporter, ATP-bi 98.0 9.5E-06 3.3E-10 96.7 9.1 132 808-944 13-144 (587)
134 1udx_A The GTP-binding protein 98.0 2.7E-06 9.1E-11 96.4 3.5 36 688-723 146-181 (416)
135 2j41_A Guanylate kinase; GMP, 97.9 1.9E-06 6.6E-11 88.0 1.5 35 694-728 1-35 (207)
136 1qhl_A Protein (cell division 97.9 3.6E-07 1.2E-11 94.9 -4.6 41 693-734 22-62 (227)
137 2qt1_A Nicotinamide riboside k 97.9 5.8E-06 2E-10 84.7 4.4 50 695-757 17-66 (207)
138 1cr0_A DNA primase/helicase; R 97.9 2.3E-06 7.9E-11 93.0 1.1 43 686-728 22-64 (296)
139 3b60_A Lipid A export ATP-bind 97.9 4.6E-05 1.6E-09 90.8 12.1 133 809-947 16-149 (582)
140 3b5x_A Lipid A export ATP-bind 97.9 6E-05 2.1E-09 89.8 13.1 132 809-946 16-148 (582)
141 3vaa_A Shikimate kinase, SK; s 97.8 4.5E-06 1.6E-10 85.0 1.8 39 685-723 11-49 (199)
142 3uie_A Adenylyl-sulfate kinase 97.8 2.9E-06 9.9E-11 86.5 -0.6 49 685-734 11-61 (200)
143 2bdt_A BH3686; alpha-beta prot 97.7 3.2E-06 1.1E-10 85.3 -0.6 54 699-755 2-63 (189)
144 2ehv_A Hypothetical protein PH 97.7 5.7E-06 1.9E-10 87.2 1.0 39 695-733 26-66 (251)
145 3a00_A Guanylate kinase, GMP k 97.7 5.6E-06 1.9E-10 83.3 0.5 26 699-724 1-26 (186)
146 2bbw_A Adenylate kinase 4, AK4 97.6 3.5E-06 1.2E-10 88.9 -2.3 59 698-756 26-97 (246)
147 1n0w_A DNA repair protein RAD5 97.6 1.5E-05 5.1E-10 83.5 2.0 40 695-734 20-66 (243)
148 2yl4_A ATP-binding cassette SU 97.6 0.00016 5.4E-09 86.4 10.6 120 823-945 23-144 (595)
149 3lda_A DNA repair protein RAD5 97.6 2.3E-05 8E-10 88.3 2.7 70 695-764 174-257 (400)
150 1wb9_A DNA mismatch repair pro 97.5 2E-05 6.7E-10 96.5 2.1 120 685-815 594-717 (800)
151 3tqc_A Pantothenate kinase; bi 97.5 2.6E-05 9E-10 85.0 2.8 83 686-772 73-167 (321)
152 2w0m_A SSO2452; RECA, SSPF, un 97.5 1.8E-05 6.1E-10 82.2 1.0 52 685-742 8-60 (235)
153 3ice_A Transcription terminati 97.5 1.6E-05 5.5E-10 87.4 0.6 55 663-725 132-200 (422)
154 4eun_A Thermoresistant glucoki 97.4 3.7E-05 1.3E-09 78.3 2.0 37 694-734 24-60 (200)
155 2kjq_A DNAA-related protein; s 97.4 4.3E-05 1.5E-09 73.9 2.0 46 688-744 30-75 (149)
156 3tau_A Guanylate kinase, GMP k 97.3 6.9E-05 2.4E-09 76.8 2.7 29 697-725 6-34 (208)
157 1ixz_A ATP-dependent metallopr 97.3 3.8E-05 1.3E-09 81.3 0.6 45 686-734 38-82 (254)
158 1svm_A Large T antigen; AAA+ f 97.3 3.7E-05 1.3E-09 85.9 0.6 55 687-744 157-219 (377)
159 3ec2_A DNA replication protein 97.3 3.3E-05 1.1E-09 77.1 -0.1 37 693-729 32-68 (180)
160 3thx_A DNA mismatch repair pro 97.3 0.0001 3.6E-09 91.3 4.4 62 663-728 630-699 (934)
161 3thx_B DNA mismatch repair pro 97.3 0.0001 3.5E-09 91.1 3.8 37 685-721 659-695 (918)
162 1iy2_A ATP-dependent metallopr 97.3 4.7E-05 1.6E-09 81.8 0.6 45 686-734 62-106 (278)
163 1rz3_A Hypothetical protein rb 97.3 8E-05 2.7E-09 75.8 2.1 37 696-732 19-55 (201)
164 2vp4_A Deoxynucleoside kinase; 97.2 0.00013 4.4E-09 76.0 3.1 35 695-733 16-50 (230)
165 1zu4_A FTSY; GTPase, signal re 97.1 0.0001 3.5E-09 80.6 1.6 45 688-732 94-138 (320)
166 2cvh_A DNA repair and recombin 97.1 0.0002 6.8E-09 73.6 2.9 48 687-743 7-55 (220)
167 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 0.00036 1.2E-08 78.2 4.7 53 695-747 16-97 (392)
168 2vf7_A UVRA2, excinuclease ABC 97.0 0.00027 9.4E-09 86.4 4.0 41 663-717 14-54 (842)
169 1knq_A Gluconate kinase; ALFA/ 97.0 0.0002 6.7E-09 70.9 2.0 34 697-734 6-39 (175)
170 2px0_A Flagellar biosynthesis 97.0 0.00037 1.3E-08 75.4 4.3 52 697-755 103-154 (296)
171 2o5v_A DNA replication and rep 97.0 0.00034 1.2E-08 77.6 3.8 33 688-721 16-48 (359)
172 4a82_A Cystic fibrosis transme 97.0 0.00071 2.4E-08 80.4 6.7 66 872-937 70-135 (578)
173 2ygr_A Uvrabc system protein A 96.9 0.00037 1.3E-08 85.9 3.8 40 663-716 24-63 (993)
174 2r6f_A Excinuclease ABC subuni 96.9 0.00038 1.3E-08 85.5 3.8 29 688-716 33-61 (972)
175 1vma_A Cell division protein F 96.9 0.00024 8.3E-09 77.0 1.8 46 692-743 97-142 (306)
176 2p67_A LAO/AO transport system 96.9 0.00017 5.8E-09 79.9 0.5 46 687-732 44-89 (341)
177 3cr8_A Sulfate adenylyltranfer 96.9 0.00022 7.4E-09 83.6 1.2 41 694-734 364-406 (552)
178 2dy1_A Elongation factor G; tr 96.9 8.4E-05 2.9E-09 89.7 -2.4 81 693-774 3-100 (665)
179 3t34_A Dynamin-related protein 96.9 0.00072 2.5E-08 75.4 5.2 45 686-733 24-70 (360)
180 3k1j_A LON protease, ATP-depen 96.8 0.00027 9.3E-09 84.5 1.8 58 686-743 47-113 (604)
181 3pih_A Uvrabc system protein A 96.8 0.00038 1.3E-08 86.0 2.9 30 687-716 12-41 (916)
182 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00074 2.5E-08 65.1 3.8 29 691-720 16-44 (149)
183 1oix_A RAS-related protein RAB 96.8 0.00056 1.9E-08 68.7 3.0 34 701-734 31-75 (191)
184 4eaq_A DTMP kinase, thymidylat 96.7 0.00061 2.1E-08 70.8 2.8 41 689-730 13-56 (229)
185 1ls1_A Signal recognition part 96.7 0.00049 1.7E-08 74.4 2.1 41 690-732 91-131 (295)
186 1f6b_A SAR1; gtpases, N-termin 96.7 0.00046 1.6E-08 69.8 1.7 36 685-721 12-47 (198)
187 2www_A Methylmalonic aciduria 96.6 0.0006 2.1E-08 75.6 2.4 36 697-732 72-107 (349)
188 2pez_A Bifunctional 3'-phospho 96.6 0.00051 1.7E-08 68.2 1.6 31 697-728 3-33 (179)
189 1m7g_A Adenylylsulfate kinase; 96.6 0.00048 1.6E-08 70.5 0.9 40 694-733 20-61 (211)
190 2f9l_A RAB11B, member RAS onco 96.5 0.00093 3.2E-08 67.4 3.0 34 701-734 7-51 (199)
191 1kag_A SKI, shikimate kinase I 96.5 0.00067 2.3E-08 66.8 1.8 27 698-724 3-29 (173)
192 1y63_A LMAJ004144AAA protein; 96.5 0.0012 4.1E-08 65.9 3.1 32 691-722 2-33 (184)
193 1w1w_A Structural maintenance 96.4 0.0011 3.9E-08 75.7 2.6 34 694-727 21-54 (430)
194 1m2o_B GTP-binding protein SAR 96.4 0.0015 5.1E-08 65.4 3.2 33 688-721 13-45 (190)
195 2dhr_A FTSH; AAA+ protein, hex 96.4 0.00088 3E-08 77.5 1.5 45 686-734 53-97 (499)
196 1sxj_E Activator 1 40 kDa subu 96.2 0.0011 3.9E-08 73.4 1.4 44 702-745 39-94 (354)
197 3m6a_A ATP-dependent protease 96.2 0.00087 3E-08 78.9 0.4 47 687-734 97-143 (543)
198 2qor_A Guanylate kinase; phosp 96.2 0.0014 4.7E-08 66.7 1.7 29 696-724 9-37 (204)
199 2gj8_A MNME, tRNA modification 96.1 0.0028 9.7E-08 62.3 3.3 27 697-723 2-28 (172)
200 2yvu_A Probable adenylyl-sulfa 96.0 0.0018 6.2E-08 64.6 1.8 36 695-730 9-44 (186)
201 2dr3_A UPF0273 protein PH0284; 96.0 0.002 6.9E-08 67.1 1.7 51 686-742 9-60 (247)
202 3qks_A DNA double-strand break 95.9 0.004 1.4E-07 63.2 3.8 29 691-720 16-44 (203)
203 3hr8_A Protein RECA; alpha and 95.9 0.0028 9.5E-08 70.0 2.6 35 695-729 57-91 (356)
204 1ega_A Protein (GTP-binding pr 95.8 0.0031 1.1E-07 68.3 2.7 47 697-743 6-55 (301)
205 1j8m_F SRP54, signal recogniti 95.8 0.0023 7.9E-08 69.1 1.3 47 690-743 89-136 (297)
206 2ffh_A Protein (FFH); SRP54, s 95.7 0.0033 1.1E-07 71.1 2.4 41 690-732 91-131 (425)
207 2ohf_A Protein OLA1, GTP-bindi 95.7 0.0044 1.5E-07 69.2 3.2 40 695-734 18-68 (396)
208 1np6_A Molybdopterin-guanine d 95.7 0.0034 1.2E-07 62.1 2.0 28 699-726 6-33 (174)
209 1mky_A Probable GTP-binding pr 95.6 0.007 2.4E-07 69.3 4.4 36 700-735 181-228 (439)
210 2qag_A Septin-2, protein NEDD5 95.5 0.0017 5.8E-08 72.3 -1.0 52 663-729 16-67 (361)
211 2p5t_B PEZT; postsegregational 95.5 0.0038 1.3E-07 65.7 1.8 38 695-734 28-65 (253)
212 2qtf_A Protein HFLX, GTP-bindi 95.5 0.0092 3.1E-07 66.3 4.8 34 701-734 181-225 (364)
213 3qkt_A DNA double-strand break 95.5 0.0067 2.3E-07 66.8 3.6 28 691-719 16-43 (339)
214 4ad8_A DNA repair protein RECN 95.4 0.0032 1.1E-07 73.7 0.9 31 688-719 50-80 (517)
215 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0045 1.5E-07 69.7 2.0 35 698-732 34-68 (392)
216 1gvn_B Zeta; postsegregational 95.3 0.0073 2.5E-07 64.8 3.3 36 697-734 31-66 (287)
217 2zej_A Dardarin, leucine-rich 95.3 0.0083 2.8E-07 59.5 3.4 25 701-725 4-28 (184)
218 3t61_A Gluconokinase; PSI-biol 95.3 0.0042 1.4E-07 62.8 1.2 25 699-723 18-42 (202)
219 2wjg_A FEOB, ferrous iron tran 95.3 0.0093 3.2E-07 59.0 3.7 23 700-722 8-30 (188)
220 1ex7_A Guanylate kinase; subst 95.2 0.0058 2E-07 61.0 1.8 24 701-724 3-26 (186)
221 1qhx_A CPT, protein (chloramph 95.1 0.0099 3.4E-07 58.5 3.3 27 698-724 2-28 (178)
222 2wji_A Ferrous iron transport 95.1 0.012 4.1E-07 57.1 3.8 24 700-723 4-27 (165)
223 3cm0_A Adenylate kinase; ATP-b 95.1 0.0097 3.3E-07 59.0 3.1 26 697-722 2-27 (186)
224 1jjv_A Dephospho-COA kinase; P 95.1 0.0098 3.4E-07 60.2 3.2 21 701-721 4-24 (206)
225 3lxx_A GTPase IMAP family memb 95.1 0.011 3.9E-07 61.3 3.7 28 701-728 31-58 (239)
226 1lv7_A FTSH; alpha/beta domain 95.0 0.0055 1.9E-07 64.5 1.1 35 688-724 36-70 (257)
227 3r20_A Cytidylate kinase; stru 95.0 0.0064 2.2E-07 63.0 1.4 26 698-723 8-33 (233)
228 2ius_A DNA translocase FTSK; n 95.0 0.0086 2.9E-07 69.2 2.5 42 691-732 159-202 (512)
229 2ga8_A Hypothetical 39.9 kDa p 94.9 0.003 1E-07 69.2 -1.4 38 687-724 10-49 (359)
230 2if2_A Dephospho-COA kinase; a 94.9 0.0093 3.2E-07 60.2 2.2 21 701-721 3-23 (204)
231 3auy_A DNA double-strand break 94.8 0.013 4.3E-07 65.5 3.5 31 689-720 16-46 (371)
232 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.4E-07 57.1 3.1 23 701-723 3-25 (173)
233 2rhm_A Putative kinase; P-loop 94.8 0.013 4.6E-07 58.3 3.1 27 697-723 3-29 (193)
234 1sxj_C Activator 1 40 kDa subu 94.7 0.0024 8.3E-08 70.4 -2.7 44 686-729 31-76 (340)
235 4a1f_A DNAB helicase, replicat 94.7 0.0089 3.1E-07 65.4 1.7 47 688-740 35-81 (338)
236 1gtv_A TMK, thymidylate kinase 94.7 0.0043 1.5E-07 63.2 -0.8 26 701-726 2-27 (214)
237 3llm_A ATP-dependent RNA helic 94.7 0.0061 2.1E-07 63.3 0.3 57 695-754 72-129 (235)
238 1kht_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 57.7 3.2 26 698-723 2-27 (192)
239 3lw7_A Adenylate kinase relate 94.6 0.015 5.2E-07 56.6 3.1 19 701-719 3-21 (179)
240 1uf9_A TT1252 protein; P-loop, 94.6 0.015 5E-07 58.5 3.0 24 699-722 8-31 (203)
241 2v54_A DTMP kinase, thymidylat 94.6 0.015 5.1E-07 58.6 2.9 26 698-723 3-28 (204)
242 2zr9_A Protein RECA, recombina 94.5 0.012 4.3E-07 64.9 2.4 43 695-743 57-99 (349)
243 1xjc_A MOBB protein homolog; s 94.5 0.012 4.1E-07 57.6 2.0 26 700-725 5-30 (169)
244 3a8t_A Adenylate isopentenyltr 94.4 0.021 7.2E-07 62.1 3.8 28 697-724 38-65 (339)
245 3trf_A Shikimate kinase, SK; a 94.4 0.019 6.5E-07 56.9 3.2 26 698-723 4-29 (185)
246 3iij_A Coilin-interacting nucl 94.3 0.013 4.4E-07 57.9 1.7 26 697-722 9-34 (180)
247 2wwf_A Thymidilate kinase, put 94.3 0.02 6.7E-07 58.0 3.2 27 697-723 8-34 (212)
248 2r6a_A DNAB helicase, replicat 94.3 0.0093 3.2E-07 68.5 0.6 51 687-742 191-241 (454)
249 2ze6_A Isopentenyl transferase 94.2 0.013 4.6E-07 61.5 1.7 24 700-723 2-25 (253)
250 2plr_A DTMP kinase, probable t 94.2 0.023 8E-07 57.4 3.4 28 698-725 3-30 (213)
251 1nn5_A Similar to deoxythymidy 94.2 0.022 7.5E-07 57.8 3.1 29 696-724 6-34 (215)
252 1fzq_A ADP-ribosylation factor 94.1 0.03 1E-06 55.2 4.0 23 700-722 17-39 (181)
253 2erx_A GTP-binding protein DI- 94.0 0.038 1.3E-06 53.3 4.4 22 701-722 5-26 (172)
254 2c95_A Adenylate kinase 1; tra 94.0 0.023 8E-07 56.6 2.9 27 697-723 7-33 (196)
255 1vht_A Dephospho-COA kinase; s 94.0 0.027 9.4E-07 57.4 3.5 24 698-721 3-26 (218)
256 3q72_A GTP-binding protein RAD 94.0 0.027 9.3E-07 54.2 3.2 24 701-724 4-27 (166)
257 3lxw_A GTPase IMAP family memb 93.9 0.026 8.9E-07 59.0 3.2 24 701-724 23-46 (247)
258 1q3t_A Cytidylate kinase; nucl 93.9 0.022 7.6E-07 59.0 2.7 27 697-723 14-40 (236)
259 1jal_A YCHF protein; nucleotid 93.9 0.035 1.2E-06 61.3 4.1 24 699-722 2-25 (363)
260 1z2a_A RAS-related protein RAB 93.8 0.025 8.5E-07 54.4 2.6 22 701-722 7-28 (168)
261 1ly1_A Polynucleotide kinase; 93.8 0.03 1E-06 54.9 3.2 22 700-721 3-24 (181)
262 3ihw_A Centg3; RAS, centaurin, 93.8 0.036 1.2E-06 54.9 3.8 28 701-728 22-54 (184)
263 2jaq_A Deoxyguanosine kinase; 93.7 0.029 1E-06 56.2 3.1 23 701-723 2-24 (205)
264 1svi_A GTP-binding protein YSX 93.7 0.029 1E-06 55.7 3.0 23 700-722 24-46 (195)
265 1ypw_A Transitional endoplasmi 93.7 0.019 6.5E-07 70.7 1.9 32 694-725 233-264 (806)
266 2vli_A Antibiotic resistance p 93.7 0.025 8.5E-07 55.8 2.4 27 697-723 3-29 (183)
267 3tw8_B RAS-related protein RAB 93.7 0.034 1.2E-06 54.2 3.4 23 701-723 11-33 (181)
268 1tev_A UMP-CMP kinase; ploop, 93.7 0.033 1.1E-06 55.4 3.3 25 698-722 2-26 (196)
269 2nzj_A GTP-binding protein REM 93.7 0.033 1.1E-06 54.0 3.3 23 701-723 6-28 (175)
270 2lkc_A Translation initiation 93.7 0.036 1.2E-06 53.9 3.5 26 698-723 7-32 (178)
271 3t5d_A Septin-7; GTP-binding p 93.6 0.031 1.1E-06 59.4 3.1 23 701-723 10-32 (274)
272 2bwj_A Adenylate kinase 5; pho 93.6 0.026 8.8E-07 56.5 2.3 28 696-723 9-36 (199)
273 3pqc_A Probable GTP-binding pr 93.6 0.032 1.1E-06 55.2 3.0 23 701-723 25-47 (195)
274 2ce2_X GTPase HRAS; signaling 93.6 0.027 9.3E-07 53.8 2.3 23 701-723 5-27 (166)
275 3cf0_A Transitional endoplasmi 93.5 0.019 6.4E-07 62.1 1.3 31 694-724 44-74 (301)
276 1kao_A RAP2A; GTP-binding prot 93.5 0.028 9.7E-07 53.8 2.4 22 701-722 5-26 (167)
277 2ged_A SR-beta, signal recogni 93.5 0.029 9.8E-07 55.7 2.5 24 700-723 49-72 (193)
278 2dyk_A GTP-binding protein; GT 93.5 0.03 1E-06 53.5 2.6 23 701-723 3-25 (161)
279 3exa_A TRNA delta(2)-isopenten 93.5 0.034 1.2E-06 59.8 3.1 27 698-724 2-28 (322)
280 1z0j_A RAB-22, RAS-related pro 93.5 0.03 1E-06 54.0 2.5 23 701-723 8-30 (170)
281 1u8z_A RAS-related protein RAL 93.5 0.03 1E-06 53.7 2.5 22 701-722 6-27 (168)
282 3q85_A GTP-binding protein REM 93.4 0.038 1.3E-06 53.3 3.2 23 701-723 4-26 (169)
283 2qmh_A HPR kinase/phosphorylas 93.4 0.058 2E-06 54.0 4.4 36 687-723 23-58 (205)
284 1g16_A RAS-related protein SEC 93.4 0.03 1E-06 54.0 2.4 22 701-722 5-26 (170)
285 1z08_A RAS-related protein RAB 93.4 0.033 1.1E-06 53.8 2.6 22 701-722 8-29 (170)
286 1ek0_A Protein (GTP-binding pr 93.4 0.031 1.1E-06 53.8 2.4 22 701-722 5-26 (170)
287 3kl4_A SRP54, signal recogniti 93.3 0.025 8.7E-07 63.9 2.0 33 698-730 96-128 (433)
288 1nks_A Adenylate kinase; therm 93.3 0.039 1.3E-06 54.7 3.1 25 700-724 2-26 (194)
289 1ky3_A GTP-binding protein YPT 93.3 0.033 1.1E-06 54.4 2.5 23 701-723 10-32 (182)
290 2ce7_A Cell division protein F 93.3 0.016 5.3E-07 66.6 0.1 36 687-724 39-74 (476)
291 3k53_A Ferrous iron transport 93.3 0.037 1.3E-06 58.7 3.0 24 701-724 5-28 (271)
292 1c1y_A RAS-related protein RAP 93.3 0.033 1.1E-06 53.5 2.4 22 701-722 5-26 (167)
293 1v5w_A DMC1, meiotic recombina 93.2 0.045 1.5E-06 60.2 3.7 47 695-743 118-166 (343)
294 1aky_A Adenylate kinase; ATP:A 93.2 0.043 1.5E-06 56.1 3.3 27 697-723 2-28 (220)
295 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.034 1.2E-06 54.1 2.4 22 701-722 9-30 (177)
296 2fn4_A P23, RAS-related protei 93.2 0.033 1.1E-06 54.3 2.2 22 701-722 11-32 (181)
297 2cxx_A Probable GTP-binding pr 93.1 0.042 1.4E-06 54.1 3.0 23 701-723 3-25 (190)
298 1wf3_A GTP-binding protein; GT 93.1 0.042 1.4E-06 59.3 3.2 22 701-722 9-30 (301)
299 2cdn_A Adenylate kinase; phosp 93.1 0.046 1.6E-06 54.9 3.3 26 698-723 19-44 (201)
300 1ko7_A HPR kinase/phosphatase; 93.1 0.048 1.6E-06 58.7 3.6 34 687-721 133-166 (314)
301 2z0h_A DTMP kinase, thymidylat 93.1 0.043 1.5E-06 54.7 3.1 23 701-723 2-24 (197)
302 2z43_A DNA repair and recombin 93.1 0.047 1.6E-06 59.6 3.6 46 695-742 103-150 (324)
303 3iev_A GTP-binding protein ERA 93.1 0.044 1.5E-06 59.4 3.2 24 700-723 11-34 (308)
304 1zd8_A GTP:AMP phosphotransfer 93.0 0.042 1.5E-06 56.4 3.0 27 697-723 5-31 (227)
305 1jwy_B Dynamin A GTPase domain 93.0 0.041 1.4E-06 59.6 3.0 23 701-723 26-48 (315)
306 1a7j_A Phosphoribulokinase; tr 93.0 0.03 1E-06 60.1 1.9 42 698-745 4-45 (290)
307 3clv_A RAB5 protein, putative; 93.0 0.038 1.3E-06 55.0 2.5 24 700-723 8-31 (208)
308 1r2q_A RAS-related protein RAB 93.0 0.038 1.3E-06 53.1 2.4 22 701-722 8-29 (170)
309 1ukz_A Uridylate kinase; trans 93.0 0.047 1.6E-06 54.9 3.2 26 698-723 14-39 (203)
310 2xtp_A GTPase IMAP family memb 92.9 0.046 1.6E-06 57.4 3.1 24 700-723 23-46 (260)
311 2y8e_A RAB-protein 6, GH09086P 92.8 0.04 1.4E-06 53.5 2.3 22 701-722 16-37 (179)
312 1via_A Shikimate kinase; struc 92.8 0.048 1.6E-06 53.4 2.9 23 701-723 6-28 (175)
313 4dsu_A GTPase KRAS, isoform 2B 92.8 0.042 1.4E-06 54.0 2.4 23 701-723 6-28 (189)
314 2oil_A CATX-8, RAS-related pro 92.8 0.044 1.5E-06 54.4 2.5 22 701-722 27-48 (193)
315 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.056 1.9E-06 56.9 3.4 27 697-723 2-28 (260)
316 1moz_A ARL1, ADP-ribosylation 92.7 0.049 1.7E-06 53.3 2.9 24 698-721 17-40 (183)
317 3def_A T7I23.11 protein; chlor 92.7 0.051 1.7E-06 57.3 3.0 23 701-723 38-60 (262)
318 3iby_A Ferrous iron transport 92.7 0.052 1.8E-06 57.1 3.1 23 701-723 3-25 (256)
319 2hxs_A RAB-26, RAS-related pro 92.7 0.051 1.7E-06 52.9 2.8 22 701-722 8-29 (178)
320 3bc1_A RAS-related protein RAB 92.7 0.045 1.5E-06 54.0 2.4 22 701-722 13-34 (195)
321 2grj_A Dephospho-COA kinase; T 92.6 0.056 1.9E-06 54.2 3.1 24 699-722 12-35 (192)
322 2fv8_A H6, RHO-related GTP-bin 92.6 0.027 9.1E-07 56.9 0.7 35 689-723 15-49 (207)
323 2g6b_A RAS-related protein RAB 92.5 0.049 1.7E-06 53.1 2.5 23 701-723 12-34 (180)
324 1r8s_A ADP-ribosylation factor 92.5 0.048 1.6E-06 52.2 2.4 21 701-721 2-22 (164)
325 1qf9_A UMP/CMP kinase, protein 92.5 0.053 1.8E-06 53.7 2.8 24 699-722 6-29 (194)
326 3fb4_A Adenylate kinase; psych 92.5 0.057 1.9E-06 54.9 3.1 23 701-723 2-24 (216)
327 2efe_B Small GTP-binding prote 92.5 0.051 1.7E-06 53.1 2.6 23 701-723 14-36 (181)
328 2aka_B Dynamin-1; fusion prote 92.5 0.054 1.8E-06 58.1 3.0 23 701-723 28-50 (299)
329 1z0f_A RAB14, member RAS oncog 92.5 0.048 1.6E-06 53.0 2.4 23 701-723 17-39 (179)
330 2pbr_A DTMP kinase, thymidylat 92.5 0.059 2E-06 53.4 3.1 23 701-723 2-24 (195)
331 2il1_A RAB12; G-protein, GDP, 92.5 0.062 2.1E-06 53.4 3.2 23 701-723 28-50 (192)
332 4dhe_A Probable GTP-binding pr 92.5 0.032 1.1E-06 56.8 1.1 24 700-723 30-53 (223)
333 1zak_A Adenylate kinase; ATP:A 92.5 0.05 1.7E-06 55.7 2.6 26 698-723 4-29 (222)
334 3foz_A TRNA delta(2)-isopenten 92.5 0.064 2.2E-06 57.6 3.4 26 699-724 10-35 (316)
335 3con_A GTPase NRAS; structural 92.5 0.049 1.7E-06 53.8 2.4 22 701-722 23-44 (190)
336 2qu8_A Putative nucleolar GTP- 92.5 0.064 2.2E-06 55.0 3.4 24 700-723 30-53 (228)
337 3t5g_A GTP-binding protein RHE 92.4 0.077 2.6E-06 51.8 3.8 20 701-720 8-27 (181)
338 1upt_A ARL1, ADP-ribosylation 92.4 0.056 1.9E-06 52.1 2.8 23 699-721 7-29 (171)
339 3cbq_A GTP-binding protein REM 92.4 0.059 2E-06 53.8 3.0 22 701-722 25-46 (195)
340 3t1o_A Gliding protein MGLA; G 92.4 0.056 1.9E-06 53.5 2.8 25 701-725 16-40 (198)
341 2a9k_A RAS-related protein RAL 92.4 0.052 1.8E-06 53.2 2.5 22 701-722 20-41 (187)
342 3bos_A Putative DNA replicatio 92.4 0.046 1.6E-06 56.2 2.2 29 698-726 51-79 (242)
343 1ksh_A ARF-like protein 2; sma 92.4 0.074 2.5E-06 52.3 3.6 27 697-723 16-42 (186)
344 3tlx_A Adenylate kinase 2; str 92.4 0.066 2.2E-06 55.8 3.4 26 698-723 28-53 (243)
345 2bme_A RAB4A, RAS-related prot 92.4 0.05 1.7E-06 53.4 2.3 22 701-722 12-33 (186)
346 3b1v_A Ferrous iron uptake tra 92.4 0.061 2.1E-06 57.1 3.1 24 700-723 4-27 (272)
347 2w58_A DNAI, primosome compone 92.3 0.054 1.8E-06 54.4 2.6 27 700-726 55-81 (202)
348 1h65_A Chloroplast outer envel 92.3 0.061 2.1E-06 56.9 3.0 23 701-723 41-63 (270)
349 1zbd_A Rabphilin-3A; G protein 92.3 0.069 2.3E-06 53.4 3.3 23 701-723 10-32 (203)
350 1vg8_A RAS-related protein RAB 92.3 0.054 1.9E-06 54.2 2.5 23 701-723 10-32 (207)
351 2h57_A ADP-ribosylation factor 92.3 0.061 2.1E-06 53.2 2.8 24 700-723 22-45 (190)
352 3i8s_A Ferrous iron transport 92.2 0.061 2.1E-06 57.1 2.9 23 701-723 5-27 (274)
353 2bov_A RAla, RAS-related prote 92.2 0.057 1.9E-06 54.0 2.5 22 701-722 16-37 (206)
354 2gf9_A RAS-related protein RAB 92.2 0.057 2E-06 53.3 2.5 22 701-722 24-45 (189)
355 2fg5_A RAB-22B, RAS-related pr 92.1 0.056 1.9E-06 53.7 2.4 22 701-722 25-46 (192)
356 1e6c_A Shikimate kinase; phosp 92.1 0.059 2E-06 52.4 2.5 23 700-722 3-25 (173)
357 2f6r_A COA synthase, bifunctio 92.1 0.068 2.3E-06 57.0 3.1 23 698-720 74-96 (281)
358 3dl0_A Adenylate kinase; phosp 92.1 0.07 2.4E-06 54.2 3.1 23 701-723 2-24 (216)
359 2iyv_A Shikimate kinase, SK; t 92.1 0.058 2E-06 53.2 2.4 23 700-722 3-25 (184)
360 2pt5_A Shikimate kinase, SK; a 92.1 0.074 2.5E-06 51.5 3.1 22 701-722 2-23 (168)
361 3kkq_A RAS-related protein M-R 92.0 0.072 2.5E-06 52.2 3.0 22 701-722 20-41 (183)
362 1nrj_B SR-beta, signal recogni 92.0 0.061 2.1E-06 54.5 2.5 23 701-723 14-36 (218)
363 3tkl_A RAS-related protein RAB 92.0 0.073 2.5E-06 52.7 3.0 23 701-723 18-40 (196)
364 1z06_A RAS-related protein RAB 92.0 0.061 2.1E-06 53.2 2.4 22 701-722 22-43 (189)
365 2zts_A Putative uncharacterize 92.0 0.084 2.9E-06 54.7 3.6 25 696-720 27-51 (251)
366 2o52_A RAS-related protein RAB 92.0 0.072 2.5E-06 53.3 3.0 22 701-722 27-48 (200)
367 3llu_A RAS-related GTP-binding 92.0 0.081 2.8E-06 52.7 3.3 25 701-725 22-46 (196)
368 2gf0_A GTP-binding protein DI- 91.9 0.058 2E-06 53.6 2.2 23 700-722 9-31 (199)
369 3d3q_A TRNA delta(2)-isopenten 91.9 0.071 2.4E-06 58.2 3.0 25 700-724 8-32 (340)
370 1sky_E F1-ATPase, F1-ATP synth 91.9 0.036 1.2E-06 63.0 0.6 44 688-732 141-184 (473)
371 4bas_A ADP-ribosylation factor 91.9 0.082 2.8E-06 52.5 3.3 23 700-722 18-40 (199)
372 1uj2_A Uridine-cytidine kinase 91.8 0.086 2.9E-06 55.1 3.5 23 700-722 23-45 (252)
373 3ake_A Cytidylate kinase; CMP 91.8 0.078 2.7E-06 53.3 3.1 23 701-723 4-26 (208)
374 3crm_A TRNA delta(2)-isopenten 91.8 0.063 2.1E-06 58.2 2.4 25 700-724 6-30 (323)
375 2p5s_A RAS and EF-hand domain 91.7 0.07 2.4E-06 53.3 2.6 25 699-723 28-52 (199)
376 3oes_A GTPase rhebl1; small GT 91.7 0.064 2.2E-06 53.7 2.2 25 699-723 24-48 (201)
377 3cnl_A YLQF, putative uncharac 91.7 0.084 2.9E-06 55.7 3.3 29 700-728 100-128 (262)
378 1mh1_A RAC1; GTP-binding, GTPa 91.7 0.069 2.4E-06 52.3 2.4 22 701-722 7-28 (186)
379 2a5j_A RAS-related protein RAB 91.7 0.071 2.4E-06 52.8 2.5 22 701-722 23-44 (191)
380 3a1s_A Iron(II) transport prot 91.7 0.082 2.8E-06 55.6 3.1 23 701-723 7-29 (258)
381 2qby_A CDC6 homolog 1, cell di 91.7 0.056 1.9E-06 59.9 2.0 32 697-728 43-74 (386)
382 3cph_A RAS-related protein SEC 91.6 0.072 2.5E-06 53.6 2.6 23 700-722 21-43 (213)
383 3bwd_D RAC-like GTP-binding pr 91.6 0.076 2.6E-06 51.8 2.7 24 699-722 8-31 (182)
384 1zd9_A ADP-ribosylation factor 91.6 0.074 2.5E-06 52.6 2.5 22 701-722 24-45 (188)
385 2h17_A ADP-ribosylation factor 91.6 0.084 2.9E-06 51.8 2.9 23 700-722 22-44 (181)
386 1m7b_A RND3/RHOE small GTP-bin 91.6 0.068 2.3E-06 52.6 2.2 22 701-722 9-30 (184)
387 2bcg_Y Protein YP2, GTP-bindin 91.6 0.07 2.4E-06 53.5 2.4 22 701-722 10-31 (206)
388 3dz8_A RAS-related protein RAB 91.6 0.068 2.3E-06 52.9 2.2 23 701-723 25-47 (191)
389 1zj6_A ADP-ribosylation factor 91.6 0.091 3.1E-06 51.8 3.2 25 698-722 15-39 (187)
390 1zuh_A Shikimate kinase; alpha 91.5 0.09 3.1E-06 51.0 3.1 24 699-722 7-30 (168)
391 1jbk_A CLPB protein; beta barr 91.5 0.094 3.2E-06 51.4 3.2 29 697-725 41-69 (195)
392 3zvl_A Bifunctional polynucleo 91.5 0.077 2.6E-06 60.0 2.9 28 696-723 255-282 (416)
393 4fcw_A Chaperone protein CLPB; 91.5 0.067 2.3E-06 57.6 2.3 32 699-730 47-78 (311)
394 2e87_A Hypothetical protein PH 91.5 0.093 3.2E-06 58.0 3.5 25 699-723 167-191 (357)
395 1x3s_A RAS-related protein RAB 91.5 0.076 2.6E-06 52.5 2.5 22 701-722 17-38 (195)
396 3be4_A Adenylate kinase; malar 91.5 0.082 2.8E-06 53.9 2.8 26 698-723 4-29 (217)
397 2f7s_A C25KG, RAS-related prot 91.5 0.091 3.1E-06 53.2 3.1 23 701-723 27-49 (217)
398 1p5z_B DCK, deoxycytidine kina 91.4 0.066 2.2E-06 56.4 2.1 27 697-723 22-48 (263)
399 2wsm_A Hydrogenase expression/ 91.4 0.071 2.4E-06 54.2 2.3 24 700-723 31-54 (221)
400 2j1l_A RHO-related GTP-binding 91.4 0.088 3E-06 53.4 3.0 22 701-722 36-57 (214)
401 2fu5_C RAS-related protein RAB 91.4 0.063 2.2E-06 52.6 1.8 22 701-722 10-31 (183)
402 2q3h_A RAS homolog gene family 91.4 0.095 3.3E-06 52.2 3.2 23 700-722 21-43 (201)
403 2b6h_A ADP-ribosylation factor 91.4 0.098 3.4E-06 52.0 3.2 25 698-722 28-52 (192)
404 1fnn_A CDC6P, cell division co 91.3 0.11 3.9E-06 57.6 3.9 30 698-727 41-72 (389)
405 2ew1_A RAS-related protein RAB 91.3 0.076 2.6E-06 53.4 2.2 22 701-722 28-49 (201)
406 3bh0_A DNAB-like replicative h 91.2 0.098 3.4E-06 56.8 3.3 50 687-742 56-105 (315)
407 2dby_A GTP-binding protein; GD 91.2 0.072 2.5E-06 59.1 2.2 22 701-722 3-24 (368)
408 2ocp_A DGK, deoxyguanosine kin 91.2 0.1 3.6E-06 54.0 3.3 26 698-723 1-26 (241)
409 2i1q_A DNA repair and recombin 91.1 0.11 3.8E-06 56.4 3.6 28 695-722 94-121 (322)
410 4edh_A DTMP kinase, thymidylat 91.1 0.12 4E-06 52.7 3.5 28 697-724 4-31 (213)
411 3reg_A RHO-like small GTPase; 91.0 0.088 3E-06 52.2 2.4 23 701-723 25-47 (194)
412 3v9p_A DTMP kinase, thymidylat 91.0 0.095 3.3E-06 53.9 2.7 28 697-724 23-50 (227)
413 2orw_A Thymidine kinase; TMTK, 91.0 0.085 2.9E-06 52.4 2.2 26 698-723 2-27 (184)
414 4djt_A GTP-binding nuclear pro 91.0 0.061 2.1E-06 54.5 1.2 22 701-722 13-34 (218)
415 3r7w_A Gtpase1, GTP-binding pr 90.9 0.12 4E-06 56.0 3.5 27 698-724 2-28 (307)
416 1puj_A YLQF, conserved hypothe 90.9 0.13 4.4E-06 54.9 3.7 27 698-724 119-145 (282)
417 2cjw_A GTP-binding protein GEM 90.9 0.092 3.2E-06 52.3 2.4 21 701-721 8-28 (192)
418 3c5c_A RAS-like protein 12; GD 90.9 0.092 3.2E-06 51.9 2.4 22 701-722 23-44 (187)
419 3eph_A TRNA isopentenyltransfe 90.8 0.11 3.8E-06 57.8 3.2 25 699-723 2-26 (409)
420 3ld9_A DTMP kinase, thymidylat 90.8 0.13 4.4E-06 52.8 3.5 29 697-725 19-47 (223)
421 2fh5_B SR-beta, signal recogni 90.8 0.11 3.9E-06 52.3 3.1 24 700-723 8-31 (214)
422 1u94_A RECA protein, recombina 90.8 0.092 3.2E-06 57.9 2.6 49 687-742 49-100 (356)
423 2gco_A H9, RHO-related GTP-bin 90.8 0.09 3.1E-06 52.6 2.2 22 701-722 27-48 (201)
424 2x77_A ADP-ribosylation factor 90.8 0.11 3.6E-06 51.3 2.7 24 698-721 21-44 (189)
425 2atv_A RERG, RAS-like estrogen 90.7 0.11 3.7E-06 51.7 2.8 23 700-722 29-51 (196)
426 1gwn_A RHO-related GTP-binding 90.7 0.095 3.2E-06 52.9 2.3 23 700-722 29-51 (205)
427 1ak2_A Adenylate kinase isoenz 90.6 0.13 4.3E-06 53.1 3.3 26 698-723 15-40 (233)
428 2g3y_A GTP-binding protein GEM 90.6 0.13 4.5E-06 52.2 3.3 22 701-722 39-60 (211)
429 3b9p_A CG5977-PA, isoform A; A 90.6 0.091 3.1E-06 56.3 2.2 27 698-724 53-79 (297)
430 2iwr_A Centaurin gamma 1; ANK 90.5 0.083 2.9E-06 51.4 1.7 23 700-722 8-30 (178)
431 3lv8_A DTMP kinase, thymidylat 90.5 0.13 4.4E-06 53.2 3.2 28 698-725 26-53 (236)
432 2x2e_A Dynamin-1; nitration, h 90.5 0.1 3.5E-06 57.7 2.5 23 701-723 33-55 (353)
433 2xb4_A Adenylate kinase; ATP-b 90.5 0.13 4.3E-06 52.7 3.1 23 701-723 2-24 (223)
434 3tmk_A Thymidylate kinase; pho 90.5 0.13 4.4E-06 52.5 3.1 29 697-725 3-31 (216)
435 2b8t_A Thymidine kinase; deoxy 90.3 0.11 3.8E-06 53.3 2.4 28 697-724 10-37 (223)
436 2atx_A Small GTP binding prote 90.3 0.11 3.7E-06 51.5 2.3 22 701-722 20-41 (194)
437 1l8q_A Chromosomal replication 90.2 0.076 2.6E-06 57.8 1.2 29 698-726 36-64 (324)
438 2p65_A Hypothetical protein PF 90.2 0.12 4E-06 50.6 2.4 28 698-725 42-69 (187)
439 4tmk_A Protein (thymidylate ki 90.1 0.15 5E-06 52.0 3.2 27 698-724 2-28 (213)
440 2yc2_C IFT27, small RAB-relate 90.1 0.071 2.4E-06 53.3 0.8 23 700-722 21-43 (208)
441 2q6t_A DNAB replication FORK h 90.1 0.12 4.1E-06 59.0 2.7 50 688-742 189-238 (444)
442 1e4v_A Adenylate kinase; trans 90.1 0.14 4.7E-06 52.0 2.9 23 701-723 2-24 (214)
443 2r62_A Cell division protease 89.9 0.043 1.5E-06 57.8 -1.1 34 689-724 36-69 (268)
444 3h4m_A Proteasome-activating n 89.8 0.11 3.8E-06 55.2 2.1 27 697-723 49-75 (285)
445 3tqf_A HPR(Ser) kinase; transf 89.8 0.25 8.4E-06 48.2 4.2 33 688-721 6-38 (181)
446 2j69_A Bacterial dynamin-like 89.7 0.15 5.2E-06 61.5 3.4 26 698-723 68-93 (695)
447 3cpj_B GTP-binding protein YPT 89.7 0.14 4.7E-06 52.2 2.6 22 701-722 15-36 (223)
448 1ltq_A Polynucleotide kinase; 89.6 0.16 5.5E-06 54.4 3.2 22 700-721 3-24 (301)
449 4dcu_A GTP-binding protein ENG 89.6 0.13 4.6E-06 58.8 2.7 22 701-722 25-46 (456)
450 2hup_A RAS-related protein RAB 89.6 0.13 4.3E-06 51.6 2.2 22 701-722 31-52 (201)
451 3umf_A Adenylate kinase; rossm 89.6 0.16 5.3E-06 51.9 2.9 27 697-723 27-53 (217)
452 4gzl_A RAS-related C3 botulinu 89.6 0.13 4.4E-06 51.7 2.2 23 699-721 30-52 (204)
453 2hf9_A Probable hydrogenase ni 89.4 0.16 5.5E-06 51.7 2.8 24 700-723 39-62 (226)
454 1tue_A Replication protein E1; 89.4 0.1 3.5E-06 52.4 1.2 28 696-723 55-82 (212)
455 2vhj_A Ntpase P4, P4; non- hyd 89.4 0.19 6.4E-06 54.2 3.4 29 694-722 118-146 (331)
456 3l0i_B RAS-related protein RAB 89.3 0.073 2.5E-06 53.2 0.1 23 701-723 35-57 (199)
457 2qpt_A EH domain-containing pr 89.3 0.16 5.5E-06 59.5 3.0 24 700-723 66-89 (550)
458 2h92_A Cytidylate kinase; ross 88.9 0.17 5.8E-06 51.3 2.6 25 699-723 3-27 (219)
459 3q3j_B RHO-related GTP-binding 88.8 0.17 5.7E-06 51.3 2.4 23 700-722 28-50 (214)
460 3geh_A MNME, tRNA modification 88.8 0.13 4.4E-06 58.9 1.8 25 698-722 223-247 (462)
461 3ec1_A YQEH GTPase; atnos1, at 88.8 0.14 4.8E-06 56.8 2.0 25 698-722 161-185 (369)
462 1xp8_A RECA protein, recombina 88.7 0.16 5.6E-06 56.2 2.4 43 695-743 70-112 (366)
463 2qz4_A Paraplegin; AAA+, SPG7, 88.6 0.14 4.7E-06 53.6 1.6 26 698-723 38-63 (262)
464 2xau_A PRE-mRNA-splicing facto 88.5 0.13 4.3E-06 63.1 1.5 33 695-727 105-137 (773)
465 3h2y_A GTPase family protein; 88.5 0.14 4.9E-06 56.8 1.8 26 698-723 159-184 (368)
466 3n70_A Transport activator; si 88.5 0.19 6.6E-06 47.5 2.5 31 698-728 23-53 (145)
467 2v3c_C SRP54, signal recogniti 88.3 0.091 3.1E-06 59.6 0.1 39 699-743 99-137 (432)
468 2j0v_A RAC-like GTP-binding pr 88.3 0.18 6.1E-06 50.8 2.2 23 700-722 10-32 (212)
469 1f5n_A Interferon-induced guan 88.3 0.21 7E-06 58.7 3.0 33 688-723 30-62 (592)
470 3gj0_A GTP-binding nuclear pro 88.2 0.14 4.8E-06 52.0 1.4 20 701-720 17-36 (221)
471 3gee_A MNME, tRNA modification 88.0 0.18 6E-06 58.0 2.2 25 698-722 232-256 (476)
472 3th5_A RAS-related C3 botulinu 87.6 0.1 3.5E-06 52.2 0.0 24 699-722 30-53 (204)
473 1njg_A DNA polymerase III subu 87.7 0.27 9.3E-06 49.9 3.2 25 701-725 47-71 (250)
474 3p32_A Probable GTPase RV1496/ 87.6 0.23 7.8E-06 54.8 2.7 27 698-724 78-104 (355)
475 2hjg_A GTP-binding protein ENG 87.5 0.26 8.9E-06 56.0 3.2 24 700-723 176-199 (436)
476 1lnz_A SPO0B-associated GTP-bi 87.5 0.27 9.1E-06 53.9 3.1 34 689-722 148-181 (342)
477 1xx6_A Thymidine kinase; NESG, 87.5 0.3 1E-05 48.8 3.2 28 697-724 6-33 (191)
478 4hlc_A DTMP kinase, thymidylat 87.2 0.32 1.1E-05 49.1 3.4 56 699-762 2-59 (205)
479 1xwi_A SKD1 protein; VPS4B, AA 86.9 0.22 7.7E-06 54.1 2.1 27 697-723 43-69 (322)
480 1wxq_A GTP-binding protein; st 86.6 0.3 1E-05 54.8 3.0 23 701-723 2-24 (397)
481 3co5_A Putative two-component 86.6 0.25 8.5E-06 46.6 2.0 26 699-724 27-52 (143)
482 3dm5_A SRP54, signal recogniti 86.5 0.29 9.8E-06 55.4 2.7 41 698-744 99-139 (443)
483 2hjg_A GTP-binding protein ENG 86.4 0.28 9.7E-06 55.7 2.7 23 701-723 5-27 (436)
484 3sjy_A Translation initiation 86.3 0.32 1.1E-05 54.6 3.1 23 701-723 10-32 (403)
485 1sxj_D Activator 1 41 kDa subu 86.3 0.16 5.4E-06 55.7 0.4 38 687-724 44-83 (353)
486 3uk6_A RUVB-like 2; hexameric 86.2 0.27 9.2E-06 54.2 2.4 29 697-725 68-96 (368)
487 2z4s_A Chromosomal replication 86.0 0.21 7.1E-06 56.9 1.2 27 699-725 130-156 (440)
488 3t15_A Ribulose bisphosphate c 86.0 0.22 7.7E-06 53.3 1.5 24 700-723 37-60 (293)
489 2chg_A Replication factor C sm 85.9 0.34 1.2E-05 48.5 2.8 24 701-724 40-63 (226)
490 1p6x_A Thymidine kinase; P-loo 85.8 0.46 1.6E-05 51.7 3.8 29 697-725 5-33 (334)
491 3syl_A Protein CBBX; photosynt 85.8 0.24 8E-06 53.2 1.5 28 698-725 66-93 (309)
492 2qgz_A Helicase loader, putati 85.7 0.4 1.4E-05 51.7 3.3 26 699-724 152-177 (308)
493 4i1u_A Dephospho-COA kinase; s 85.3 0.4 1.4E-05 48.5 2.9 21 701-721 11-31 (210)
494 1d2n_A N-ethylmaleimide-sensit 85.2 0.42 1.4E-05 50.3 3.1 27 697-723 62-88 (272)
495 1ypw_A Transitional endoplasmi 85.0 0.12 4E-06 63.7 -1.5 34 691-724 503-536 (806)
496 1kk1_A EIF2gamma; initiation o 84.8 0.45 1.5E-05 53.6 3.3 23 701-723 12-34 (410)
497 3bgw_A DNAB-like replicative h 84.7 0.43 1.5E-05 54.3 3.1 48 689-742 187-234 (444)
498 3q5d_A Atlastin-1; G protein, 84.6 0.35 1.2E-05 54.8 2.2 23 700-722 68-90 (447)
499 2v1u_A Cell division control p 84.6 0.35 1.2E-05 53.5 2.2 29 697-725 42-70 (387)
500 1x6v_B Bifunctional 3'-phospho 84.4 0.49 1.7E-05 55.9 3.5 26 698-723 51-76 (630)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-75 Score=756.18 Aligned_cols=529 Identities=19% Similarity=0.199 Sum_probs=420.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16196 307 RMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPS 384 (950)
Q Consensus 307 ~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~ 384 (950)
....++.++...++..+|+|+++++..++++.++|+++|++++|+++ .++ ...+..++..++.+++++++++...+..
T Consensus 159 ~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l 238 (1321)
T 4f4c_A 159 CYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQL 238 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888889999999999999999999999999999999999 554 4567888899999888888887766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 385 VLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYL 464 (950)
Q Consensus 385 ~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l 464 (950)
+++.++++++++++..++.+++.+..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+..++..+...+....
T Consensus 239 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1321)
T 4f4c_A 239 TLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLF 318 (1321)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888999999999999999999999999999999999999999998888877666655554444444
Q ss_pred HHHHHHHHHhhhH--HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy16196 465 NAATSFIWSCAPF--LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQE 542 (950)
Q Consensus 465 ~~~~~~~~~~~p~--l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 542 (950)
..+...+..+... .+.++.++++.+.. +.++++.+|+.++++..+..|+..++..+..+.++.+|++||++||+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~--g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 396 (1321)
T 4f4c_A 319 LGISFGAMQASNFISFALAFYIGVGWVHD--GSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333222222222 22334456666554 5799999999999999999999999999999999999999999999765
Q ss_pred cCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccc
Q psy16196 543 DLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSC 622 (950)
Q Consensus 543 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (950)
+..+... + .....
T Consensus 397 ~~~~~~~----------------------------------~--------------------------------~~~~~- 409 (1321)
T 4f4c_A 397 PVIDSSS----------------------------------K--------------------------------AGRKD- 409 (1321)
T ss_dssp CCSSCSS----------------------------------S--------------------------------CCCCC-
T ss_pred ccccccc----------------------------------c--------------------------------ccccC-
Confidence 4321100 0 00000
Q ss_pred cccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEE
Q psy16196 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLV 702 (950)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lv 702 (950)
...++.|+|+||+|+|+.. ++.++|+||||+|++|+++
T Consensus 410 ------------------------------------~~~~g~I~~~nvsF~Y~~~------~~~~vL~~isl~i~~G~~v 447 (1321)
T 4f4c_A 410 ------------------------------------MKIKGDITVENVHFTYPSR------PDVPILRGMNLRVNAGQTV 447 (1321)
T ss_dssp ------------------------------------CCCCCCEEEEEEEECCSSS------TTSCSEEEEEEEECTTCEE
T ss_pred ------------------------------------CCCCCcEEEEEeeeeCCCC------CCCceeeceEEeecCCcEE
Confidence 1123579999999999752 3578999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHH
Q psy16196 703 AIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKV 768 (950)
Q Consensus 703 aIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~V 768 (950)
|||||+|||||||+++|+|+|+|++|+|.++| +||||+|+|||||+||||||+||+| .+++++.++
T Consensus 448 aivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a 527 (1321)
T 4f4c_A 448 ALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAA 527 (1321)
T ss_dssp EEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHH
T ss_pred EEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHH
Confidence 99999999999999999999999999999998 6999999999999999999999987 577889999
Q ss_pred HHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc--------------------------------------------
Q psy16196 769 IDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV-------------------------------------------- 804 (950)
Q Consensus 769 i~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI-------------------------------------------- 804 (950)
++.|++++|++.||+||+|+|||+|.+|||||||||
T Consensus 528 ~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~i 607 (1321)
T 4f4c_A 528 CKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTI 607 (1321)
T ss_dssp HHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEE
T ss_pred HHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16196 805 -------------------------------------------------------------------------------- 804 (950)
Q Consensus 805 -------------------------------------------------------------------------------- 804 (950)
T Consensus 608 iiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1321)
T 4f4c_A 608 IIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQA 687 (1321)
T ss_dssp EECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred EEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----------------------------------cHHHHH---------------HHHHhcChhH-HHHHHHHHHHHHHH
Q psy16196 805 ----------------------------------KWQVYL---------------HYLKSIGLPL-SMAAILLNIAFQGF 834 (950)
Q Consensus 805 ----------------------------------~~~vy~---------------~Y~~~~G~~~-~~~~~~~~~~~~~~ 834 (950)
.++.|+ .|..+.+.+. +++.+++.++..+.
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 767 (1321)
T 4f4c_A 688 SEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFI 767 (1321)
T ss_dssp ----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGH
T ss_pred ccccchhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333 3333333222 22222223333333
Q ss_pred HHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Q psy16196 835 AIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFF 914 (950)
Q Consensus 835 ~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FF 914 (950)
.....+|++.|.+.... +.........+|..+|++++++..++.+++.+++...+.+++++||++|+++++++||+||
T Consensus 768 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ff 845 (1321)
T 4f4c_A 768 YPTYSVFFTSFMNVFAG--NPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFF 845 (1321)
T ss_dssp HHHHHHHHHHHHHHTSS--CSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSST
T ss_pred HHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 33445566666543221 0011123346788999999999999999999999999999999999999999999999999
Q ss_pred cc--cccccccccccCchHHhhhhhHHHHHHHHHHH
Q psy16196 915 DT--TPQGRIISRFSKDVDILDNAIPFCIKSWLLCL 948 (950)
Q Consensus 915 d~--tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~~ 948 (950)
|+ ||+|+|+|||++|++.+|+.+|..+..++.++
T Consensus 846 d~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~ 881 (1321)
T 4f4c_A 846 DSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTL 881 (1321)
T ss_dssp TSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHH
T ss_pred ccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHh
Confidence 97 99999999999999999999998887776654
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-58 Score=594.81 Aligned_cols=591 Identities=16% Similarity=0.172 Sum_probs=420.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CC----------c-hhHHHHHHHHHHHHHHHHHH
Q psy16196 240 TFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPN--------AP----------L-WKGYFYAILLLVTSVVQTLL 300 (950)
Q Consensus 240 ~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~--------~~----------~-~~g~~~~~~l~l~~~~~~~~ 300 (950)
.++..++.++++.++..++..+.|++++.+++.+.... .. . .....++..++.+.++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777778888888888887543110 00 0 01112233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHH
Q psy16196 301 LSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLW 378 (950)
Q Consensus 301 ~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~ 378 (950)
.....+...+.+.++...++..+|+|+++++..++++.++|+++|++++|++. .+. ...+..+...++.++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32233344577888899999999999999999999999999999999999998 543 4445556666666666666665
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHH
Q psy16196 379 GILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVL 458 (950)
Q Consensus 379 ~~lg~~~l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~ 458 (950)
...+..+++.+++++++..+..++.++..+..++..+..++..+.+.|.++||++||.|++|+.+.++..+..++-.+..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 54444455555555566666677788888888888888888899999999999999999999877666655444433332
Q ss_pred ----HHHHHHHHHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 459 ----KEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKR 534 (950)
Q Consensus 459 ----~~~~~l~~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~R 534 (950)
+.......+..++.... .+.++.++.+.+.. +.++++..++.+..+.....|+..+...+..+.++.++.+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~lv~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 360 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYAS--YALAFWYGTSLVIS--KEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--SSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222221 22234455665554 34676666665555556678999999999999999999999
Q ss_pred HHHhcCcccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhh
Q psy16196 535 INSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMV 614 (950)
Q Consensus 535 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (950)
|.++++.++..+... +
T Consensus 361 i~~~l~~~~~~~~~~----------------------------------~------------------------------ 376 (1284)
T 3g5u_A 361 VFKIIDNKPSIDSFS----------------------------------K------------------------------ 376 (1284)
T ss_dssp HHHTTSCCCCCSSCC----------------------------------S------------------------------
T ss_pred HHHHHcCCCcCCccc----------------------------------c------------------------------
Confidence 999997543211100 0
Q ss_pred hhhhcccccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeE
Q psy16196 615 LTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINM 694 (950)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl 694 (950)
..... +...+.|+++|++|+|++. ++.++|+||||
T Consensus 377 --~~~~~-------------------------------------~~~~g~i~~~~v~~~y~~~------~~~~vL~~isl 411 (1284)
T 3g5u_A 377 --SGHKP-------------------------------------DNIQGNLEFKNIHFSYPSR------KEVQILKGLNL 411 (1284)
T ss_dssp --SCCCC-------------------------------------TTCCCCEEEEEEEECCSST------TSCCSEEEEEE
T ss_pred --cCCCC-------------------------------------CCCCCeEEEEEEEEEcCCC------CCCcceecceE
Confidence 00000 1123579999999999751 24579999999
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-C
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-H 760 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~ 760 (950)
+|++||+++||||+|||||||+++|+|+++|++|+|.++| +||||+|+||+|++||||||.||.+ .
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~ 491 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999998 4999999999999999999999976 5
Q ss_pred ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc------------------------------------
Q psy16196 761 VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV------------------------------------ 804 (950)
Q Consensus 761 d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI------------------------------------ 804 (950)
++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||
T Consensus 492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 571 (1284)
T 3g5u_A 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571 (1284)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999
Q ss_pred ------------------------------------------cHHHHHH-------------------------------
Q psy16196 805 ------------------------------------------KWQVYLH------------------------------- 811 (950)
Q Consensus 805 ------------------------------------------~~~vy~~------------------------------- 811 (950)
.-..|..
T Consensus 572 ~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1284)
T 3g5u_A 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSS 651 (1284)
T ss_dssp HHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-------------------------
T ss_pred HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 0001111
Q ss_pred --------------------------------------------HHHhc--ChhHHHHHHHHHHHHHHHHH----hHHHH
Q psy16196 812 --------------------------------------------YLKSI--GLPLSMAAILLNIAFQGFAI----GSNIW 841 (950)
Q Consensus 812 --------------------------------------------Y~~~~--G~~~~~~~~~~~~~~~~~~~----~~~~W 841 (950)
|++.. .++.+++.+++.++..++.. ....|
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1284)
T 3g5u_A 652 KDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731 (1284)
T ss_dssp --------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 11111222222223222222 23344
Q ss_pred HHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--cccc
Q psy16196 842 LSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFD--TTPQ 919 (950)
Q Consensus 842 L~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd--~tp~ 919 (950)
+..|.+.... ........+|..+|++++++..++.+++.+.+...+.+.+.++|.++++++++.|++||| .+|+
T Consensus 732 i~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~ 807 (1284)
T 3g5u_A 732 VGVFTNGGPP----ETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTT 807 (1284)
T ss_dssp HHHHHSSCST----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCH
T ss_pred HHHHhccCcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCH
Confidence 5555543220 001123457888999999999999999999898999999999999999999999999999 5999
Q ss_pred ccccccccCchHHhhhhhHHHHHHHHHH
Q psy16196 920 GRIISRFSKDVDILDNAIPFCIKSWLLC 947 (950)
Q Consensus 920 GrIlNRFS~D~~~iD~~Lp~~~~~~~~~ 947 (950)
|+|+|||++|++.+|..++..+..++..
T Consensus 808 G~l~~rl~~D~~~i~~~~~~~l~~~~~~ 835 (1284)
T 3g5u_A 808 GALTTRLANDAAQVKGATGSRLAVIFQN 835 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776655543
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3e-56 Score=533.61 Aligned_cols=456 Identities=20% Similarity=0.260 Sum_probs=367.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-chhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAP-LWKG-----YFYAILLLVTSVVQTLLLSTYFDR 307 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g-----~~~~~~l~l~~~~~~~~~~~~~~~ 307 (950)
++.+++.+++.++.++++.++..++.++.|++++.++|.+...... .... +.++++++++.++..++.....+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (578)
T 4a82_A 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYL 84 (578)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999999999999999999999999977543221 1111 233344444455555554444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16196 308 MFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSV 385 (950)
Q Consensus 308 ~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~ 385 (950)
..+.+.++...++..+|+|+++++..++++.++|+++|++++|+++ .+. ...++.+|..++.+++++++++...++.+
T Consensus 85 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (578)
T 4a82_A 85 AQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6688999999999999999999999999999999999999999999 554 44567889999998888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 386 LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLN 465 (950)
Q Consensus 386 l~gl~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~ 465 (950)
++.++++++++.+..++.++..+..++..+..+++.+.+.|.++||++||+|++|+.+.+++++.++++.+...+.....
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888999999999999999999999999999999999999999988888877776666555444433
Q ss_pred HHH----HHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy16196 466 AAT----SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQ 541 (950)
Q Consensus 466 ~~~----~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~ 541 (950)
... .++..+.+ +.++.+++|.+.. +.++++..++.+.++..+..|+..++..+..+.++.+|++||.++++.
T Consensus 245 ~~~~~~~~~~~~~~~--~~v~~~g~~~v~~--g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 245 AYSFAAINTVTDIGP--IIVIGVGAYLAIS--GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHH--TSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 332 22222222 2334566666654 468999888888899999999999999999999999999999999976
Q ss_pred ccCCCCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccc
Q psy16196 542 EDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHS 621 (950)
Q Consensus 542 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (950)
++..++.. .....
T Consensus 321 ~~~~~~~~-------------------------------------------------------------------~~~~~ 333 (578)
T 4a82_A 321 DYDIKNGV-------------------------------------------------------------------GAQPI 333 (578)
T ss_dssp CCSSCCCT-------------------------------------------------------------------TCCCC
T ss_pred CCcccCCC-------------------------------------------------------------------Ccccc
Confidence 53221100 00000
Q ss_pred ccccccCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeE
Q psy16196 622 CMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTL 701 (950)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~l 701 (950)
+...+.++++|++|+|++ .++++|+|+||+|++||+
T Consensus 334 -------------------------------------~~~~~~i~~~~v~~~y~~-------~~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 334 -------------------------------------EIKQGRIDIDHVSFQYND-------NEAPILKDINLSIEKGET 369 (578)
T ss_dssp -------------------------------------CCCSCCEEEEEEEECSCS-------SSCCSEEEEEEEECTTCE
T ss_pred -------------------------------------CCCCCeEEEEEEEEEcCC-------CCCcceeeeEEEECCCCE
Confidence 112347999999999975 356899999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCC-ChhHHHH
Q psy16196 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTH-VPRRYNK 767 (950)
Q Consensus 702 vaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~-d~~~y~~ 767 (950)
++||||+|||||||+++|+|+++|++|+|.++| +||||+|+||+|++||+|||.+|.+. ++++..+
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~ 449 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 449 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHH
Confidence 999999999999999999999999999999998 59999999999999999999999764 4566788
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++.|+++++++.+|+|++|.+||+|.+|||||||||
T Consensus 450 ~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 450 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp HHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred HHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 8888899999999999999999999999999999999
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.7e-55 Score=520.51 Aligned_cols=456 Identities=19% Similarity=0.268 Sum_probs=354.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 233 IVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 233 L~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
.++.+++.+++.++.++++.++..++.+++|++++.++|.+..... ....+.+++.++++.++..++.....+...+.+
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778899999999999999999999999999999997643221 111222222333333333333222333345677
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLA 390 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~ 390 (950)
.++...++..+|+|+++++..++++.++|+++|++++|+++ .+. ...+..++..++.+++++++++...+..+++.++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999 554 4455667777877777777766655555556566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy16196 391 VMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILK----IRSKEIKVLKEAAYLNA 466 (950)
Q Consensus 391 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~----~R~~El~~~~~~~~l~~ 466 (950)
++++++.+..++.++..+..++..+..+++.+.++|.++||++||+|++|+.+.+++++ .|+.+++..+.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667778888888888899999999999999999999999999999876555554 45555554444333333
Q ss_pred HHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy16196 467 ATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDR 546 (950)
Q Consensus 467 ~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 546 (950)
+..++... ..+.++.++++.+.. +.++.+..++.+.++..+..|+..++..+..+.++.+|.+||.++++.++..+
T Consensus 252 ~~~~~~~~--~~~~vl~~g~~~v~~--g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 252 LFIFIVNM--GMIAVLWFGGVLVRN--NQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 33222222 233445667776664 46888888888888889999999999999999999999999999997543211
Q ss_pred CcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccc
Q psy16196 547 GFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFF 626 (950)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (950)
+. . .....
T Consensus 328 ~~--------------------------------------~-----------------------------~~~~~----- 335 (587)
T 3qf4_A 328 EA--------------------------------------D-----------------------------NALAL----- 335 (587)
T ss_dssp CC--------------------------------------T-----------------------------TCBCC-----
T ss_pred CC--------------------------------------C-----------------------------Ccccc-----
Confidence 10 0 00000
Q ss_pred cCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEc
Q psy16196 627 DTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVG 706 (950)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG 706 (950)
+...+.|+++|++|+|++ +++++|+|+||+|++||+++|||
T Consensus 336 --------------------------------~~~~~~i~~~~v~~~y~~-------~~~~~l~~isl~i~~Ge~~~ivG 376 (587)
T 3qf4_A 336 --------------------------------PNVEGSVSFENVEFRYFE-------NTDPVLSGVNFSVKPGSLVAVLG 376 (587)
T ss_dssp --------------------------------SCCCCCEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEEC
T ss_pred --------------------------------CCCCCcEEEEEEEEEcCC-------CCCcceeceEEEEcCCCEEEEEC
Confidence 112357999999999975 35689999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHh
Q psy16196 707 SVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDAC 772 (950)
Q Consensus 707 ~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac 772 (950)
|+|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||||||.+|.+ .++++.+++++.|
T Consensus 377 ~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~ 456 (587)
T 3qf4_A 377 ETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIA 456 (587)
T ss_dssp SSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999987 5999999999999999999999976 5667888999999
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.+|+|++|.+||+|.+|||||||||
T Consensus 457 ~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 457 QIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp TCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred CcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-55 Score=528.12 Aligned_cols=453 Identities=18% Similarity=0.252 Sum_probs=366.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 236 ALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRM 315 (950)
Q Consensus 236 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (950)
.+++.+++.++.++++.++..++.+++|++++.+++.+..+.. ......++++++++.++.+++.....+...+.+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (598)
T 3qf4_B 30 GYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDV 108 (598)
T ss_dssp GGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999999998754321 122222333444444444544444444556788899
Q ss_pred HHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16196 316 RSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMV 393 (950)
Q Consensus 316 r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~ 393 (950)
...++..+|+|+++++..++++.++|+++|++++|+++ .+. ...++.++..++.+++++++++...++.+++.+++++
T Consensus 109 ~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~ 188 (598)
T 3qf4_B 109 VFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVP 188 (598)
T ss_dssp HHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 554 4567888999999988888888777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 394 ILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWS 473 (950)
Q Consensus 394 ~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~ 473 (950)
+++.+..++.++.++..++..+..+++.+.+.|.++|+++||+|++|+.+.+++++.+++..+...+..........+..
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (598)
T 3qf4_B 189 LTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMN 268 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999999999999999999999999999999999999998888877766665554333222222
Q ss_pred hhhH--HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccc
Q psy16196 474 CAPF--LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTID 551 (950)
Q Consensus 474 ~~p~--l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 551 (950)
+... .+.++.+++|.+.. +.++++..++.+.+...+..|+..++..+..+.++.++++||.++++.++..+..
T Consensus 269 ~~~~~~~~~~~~~g~~l~~~--g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--- 343 (598)
T 3qf4_B 269 MVNNLGFALISGFGGWLALK--DIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP--- 343 (598)
T ss_dssp HHHHHHHHHHHHHHHHHGGG--TSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS---
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---
Confidence 2211 23344567776664 4688888888888888889999999999999999999999999999765432110
Q ss_pred cccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcc
Q psy16196 552 YSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPL 631 (950)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (950)
.....
T Consensus 344 -----------------------------------------------------------------~~~~~---------- 348 (598)
T 3qf4_B 344 -----------------------------------------------------------------DAVEL---------- 348 (598)
T ss_dssp -----------------------------------------------------------------SCCCC----------
T ss_pred -----------------------------------------------------------------CCCCC----------
Confidence 00000
Q ss_pred cccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCC
Q psy16196 632 GRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAG 711 (950)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSG 711 (950)
+...+.|+++|++|+|++ +.++|+|+||+|++||+++||||+|||
T Consensus 349 ---------------------------~~~~~~i~~~~v~~~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsG 393 (598)
T 3qf4_B 349 ---------------------------REVRGEIEFKNVWFSYDK--------KKPVLKDITFHIKPGQKVALVGPTGSG 393 (598)
T ss_dssp ---------------------------CSCCCCEEEEEEECCSSS--------SSCSCCSEEEECCTTCEEEEECCTTSS
T ss_pred ---------------------------CCCCCeEEEEEEEEECCC--------CCccccceEEEEcCCCEEEEECCCCCc
Confidence 112346999999999975 467999999999999999999999999
Q ss_pred hhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCch
Q psy16196 712 KSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPD 777 (950)
Q Consensus 712 KSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~D 777 (950)
||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.+|.+ .++++.+++++.|+++++
T Consensus 394 KSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~ 473 (598)
T 3qf4_B 394 KTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF 473 (598)
T ss_dssp TTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHH
T ss_pred HHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHH
Confidence 99999999999999999999998 5999999999999999999999976 566778888888899999
Q ss_pred hhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 778 FEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 778 i~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.+|+|++|.+||+|.+|||||||||
T Consensus 474 ~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 474 IKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp HHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred HHhccccccchhcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.9e-53 Score=507.38 Aligned_cols=453 Identities=18% Similarity=0.200 Sum_probs=361.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGM 313 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 313 (950)
++.+++.+++.++.++++.++..++..+.|++++.+++.+..+.. ....+.++++++++.++..++.....+...+.+.
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
T 3b5x_A 16 LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE-SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888999999999999999999997653211 1112222222334444455554444455668889
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 314 RMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 314 ~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
++...++..+|+|+++++...+++.++|++++++++|+++ .+. ...+..++..++.+++++++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 174 (582)
T 3b5x_A 95 NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 553 56678888888888888777776655566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQ----ILKIRSKEIKVLKEAAYLNAA 467 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~----i~~~R~~El~~~~~~~~l~~~ 467 (950)
+++.+.+..++.++..+..++..+..+++.+.+.|.++|+++||.|++|+.+.++ .++.++.+++..+.......+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T 3b5x_A 175 APVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPV 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777888888888888889999999999999999999999999975555 445566666666655555555
Q ss_pred HHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy16196 468 TSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRG 547 (950)
Q Consensus 468 ~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 547 (950)
..++..+... .++.+++|.+.. +.++++..+..+.+...+..|+..++..+..+.++.++++||.++++.++..+.
T Consensus 255 ~~~~~~~~~~--~i~~~g~~~v~~--g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 255 IQMIASLALF--AVLFLASVDSIR--AELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 5444443332 234566676664 468888888888888899999999999999999999999999999975432111
Q ss_pred cccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccccc
Q psy16196 548 FTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFD 627 (950)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (950)
.....
T Consensus 331 ---------------------------------------------------------------------~~~~~------ 335 (582)
T 3b5x_A 331 ---------------------------------------------------------------------GKYEA------ 335 (582)
T ss_pred ---------------------------------------------------------------------CCCCC------
Confidence 00000
Q ss_pred CCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcC
Q psy16196 628 TTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGS 707 (950)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~ 707 (950)
+...+.++++|++|+|++ +++++|+|+||+|++||.++||||
T Consensus 336 -------------------------------~~~~~~i~~~~v~~~y~~-------~~~~~l~~i~l~i~~G~~~~ivG~ 377 (582)
T 3b5x_A 336 -------------------------------ERVNGEVDVKDVTFTYQG-------KEKPALSHVSFSIPQGKTVALVGR 377 (582)
T ss_pred -------------------------------CCCCCeEEEEEEEEEcCC-------CCccccccceEEECCCCEEEEECC
Confidence 111246999999999974 236799999999999999999999
Q ss_pred CCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCC--CCChhHHHHHHHHh
Q psy16196 708 VGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK--THVPRRYNKVIDAC 772 (950)
Q Consensus 708 vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~--~~d~~~y~~Vi~ac 772 (950)
+|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.+|. ..++++.+++++.+
T Consensus 378 sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 457 (582)
T 3b5x_A 378 SGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQA 457 (582)
T ss_pred CCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHC
Confidence 999999999999999999999999987 599999999999999999999986 45677889999999
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.+|+|++|.+||+|.+|||||||||
T Consensus 458 ~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 458 HAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred CCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.5e-53 Score=505.49 Aligned_cols=453 Identities=17% Similarity=0.186 Sum_probs=360.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGM 313 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 313 (950)
+..+++.+++.++.++++.++..++..+.|++++.+++.+.... .....+.++++++++.++.+++.....+...+.+.
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
T 3b60_A 16 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSG 94 (582)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888899999999999999999999765321 11111222222334444455554444455667889
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16196 314 RMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAV 391 (950)
Q Consensus 314 ~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~ 391 (950)
++...++..+|+|+++++...+++.++|+++|++++|+++ .+ +...+..++..++.+++++++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 174 (582)
T 3b60_A 95 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 174 (582)
T ss_dssp HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 55 455678888888888888877777655556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy16196 392 MVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQI----LKIRSKEIKVLKEAAYLNAA 467 (950)
Q Consensus 392 ~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i----~~~R~~El~~~~~~~~l~~~ 467 (950)
+++++.+..++.++..+..++..+..+++.+.+.|.++|+++||.|++|+.+.++. ++.++.+++..+.......+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T 3b60_A 175 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 254 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888888889999999999999999999999999999865554 45566666666655555555
Q ss_pred HHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy16196 468 TSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRG 547 (950)
Q Consensus 468 ~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 547 (950)
..++..+... .++.+++|.+.. +.++++..+..+.+...+..|+..++..+..+.++.++++||.++++.++..+.
T Consensus 255 ~~~~~~~~~~--~~~~~g~~~v~~--g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b60_A 255 IQLIASLALA--FVLYAASFPSVM--DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE 330 (582)
T ss_dssp HHHHHHHHHH--HHHHHHHSSSTT--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 5444443332 234556666554 468888888888888999999999999999999999999999999965432111
Q ss_pred cccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccccc
Q psy16196 548 FTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFD 627 (950)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (950)
.....
T Consensus 331 ---------------------------------------------------------------------~~~~~------ 335 (582)
T 3b60_A 331 ---------------------------------------------------------------------GKRVI------ 335 (582)
T ss_dssp ---------------------------------------------------------------------CCBCC------
T ss_pred ---------------------------------------------------------------------CCCCC------
Confidence 00000
Q ss_pred CCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcC
Q psy16196 628 TTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGS 707 (950)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~ 707 (950)
+...+.++++|++|+|++ +++++|+|+||+|++||.++||||
T Consensus 336 -------------------------------~~~~~~i~~~~v~~~y~~-------~~~~~l~~v~~~i~~G~~~~ivG~ 377 (582)
T 3b60_A 336 -------------------------------DRATGDLEFRNVTFTYPG-------REVPALRNINLKIPAGKTVALVGR 377 (582)
T ss_dssp -------------------------------SCCCCCEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEEEC
T ss_pred -------------------------------CCCCCcEEEEEEEEEcCC-------CCCccccceeEEEcCCCEEEEECC
Confidence 111246999999999974 236799999999999999999999
Q ss_pred CCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCC--CCChhHHHHHHHHh
Q psy16196 708 VGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK--THVPRRYNKVIDAC 772 (950)
Q Consensus 708 vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~--~~d~~~y~~Vi~ac 772 (950)
+|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.+|. ..++++.+++++.+
T Consensus 378 sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~ 457 (582)
T 3b60_A 378 SGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 457 (582)
T ss_dssp TTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHc
Confidence 999999999999999999999999987 599999999999999999999986 45677889999999
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++++.+|+|++|.+||+|.+|||||||||
T Consensus 458 ~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp TCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred CCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.5e-52 Score=500.49 Aligned_cols=457 Identities=18% Similarity=0.203 Sum_probs=354.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 234 VGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNA-PLW-KGYFYAILLLVTSVVQTLLLSTYFDRMFRV 311 (950)
Q Consensus 234 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~-~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 311 (950)
+..+++.+++.++.++++.++..++..+.|++++.+++.+..... ... ..+.++++++++.++..++.....+...+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (595)
T 2yl4_A 10 LLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTS 89 (595)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888999999999999999999997642211 111 112222223333333344333333445678
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16196 312 GMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGL 389 (950)
Q Consensus 312 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl 389 (950)
+.++...++..+|+|+++++...+++.++|+++|++++|+++ .+ +...+..++..++.+++++++++...++.+++.+
T Consensus 90 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 169 (595)
T 2yl4_A 90 GQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVL 169 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999999999999999999999999999999999999 54 4556777888888887777777766566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy16196 390 AVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQI----LKIRSKEIKVLKEAAYLN 465 (950)
Q Consensus 390 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i----~~~R~~El~~~~~~~~l~ 465 (950)
+++++++.+..++.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.++. ++.++.+++..+......
T Consensus 170 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (595)
T 2yl4_A 170 SVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFF 249 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667778888888888888899999999999999999999999999655554 455555665555554444
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Q psy16196 466 AATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLD 545 (950)
Q Consensus 466 ~~~~~~~~~~p~l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 545 (950)
....++..+. .+.++.+++|.+.. +.++++..+..+.+...+..|+..++..+..+.++.++++||.++++.++..
T Consensus 250 ~~~~~~~~~~--~~~~~~~g~~~v~~--g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 325 (595)
T 2yl4_A 250 GATGLSGNLI--VLSVLYKGGLLMGS--AHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKL 325 (595)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHT--TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4443333322 23345567776664 4588888777777888899999999999999999999999999999754321
Q ss_pred CCcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhccccccc
Q psy16196 546 RGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSF 625 (950)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (950)
+.. . .....
T Consensus 326 ~~~--------------------------------------~-----------------------------~~~~~---- 334 (595)
T 2yl4_A 326 PFN--------------------------------------E-----------------------------GVILN---- 334 (595)
T ss_dssp CSS--------------------------------------C-----------------------------SBCCC----
T ss_pred CCC--------------------------------------C-----------------------------CCCCC----
Confidence 110 0 00000
Q ss_pred ccCCcccccccccCCCCcccccccccccccCcCCCCCCc-EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEE
Q psy16196 626 FDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDP-LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAI 704 (950)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaI 704 (950)
+...+. |+++|++|+|++. .+.++|+|+||+|++||+++|
T Consensus 335 ---------------------------------~~~~~~~i~~~~v~~~y~~~------~~~~vl~~isl~i~~G~~~~i 375 (595)
T 2yl4_A 335 ---------------------------------EKSFQGALEFKNVHFAYPAR------PEVPIFQDFSLSIPSGSVTAL 375 (595)
T ss_dssp ---------------------------------TTTCCCCEEEEEEEEECSSC------TTSEEEEEEEEEECTTCEEEE
T ss_pred ---------------------------------cCCCCCeEEEEEEEEEeCCC------CCCccccceEEEEcCCCEEEE
Confidence 011245 9999999999741 134799999999999999999
Q ss_pred EcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCC----CChhHHHH
Q psy16196 705 VGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKT----HVPRRYNK 767 (950)
Q Consensus 705 VG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~----~d~~~y~~ 767 (950)
|||+|||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.+|.+ .++++.++
T Consensus 376 vG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~ 455 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQR 455 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHH
Confidence 999999999999999999999999999988 5999999999999999999999876 46778899
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++.|+++++++.+|+|++|.+||+|.+|||||||||
T Consensus 456 ~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv 492 (595)
T 2yl4_A 456 VAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492 (595)
T ss_dssp HHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 9999999999999999999999999999999999999
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.3e-51 Score=529.33 Aligned_cols=454 Identities=17% Similarity=0.216 Sum_probs=319.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 241 FGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEP-NAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSAL 319 (950)
Q Consensus 241 ~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~r~~L 319 (950)
+++.++.+.+..++..+.....++++...++....+ ......+..+++.++++.++..++.....+...+.+.++...|
T Consensus 750 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~l 829 (1321)
T 4f4c_A 750 HALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDL 829 (1321)
T ss_dssp GHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554455555667777777765433 2222334445555555555544444333344557788888899
Q ss_pred HHHHHHHHhcccccccCC--CChhhHHHHHhhcccc-cc-hHhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16196 320 ISTIYRKALTISNNARKE--TTVGEIVNLMSVDAQR-MD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVIL 395 (950)
Q Consensus 320 ~~~iy~K~L~l~~~~~~~--~~~G~ivnlms~Dv~r-~~-~~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~gl~~~~~~ 395 (950)
+..+|+|+++.+..+++. +++|+++|++++|++. .+ +...+..+....+.+++++.+++...+..+++.+++++++
T Consensus 830 r~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~ 909 (1321)
T 4f4c_A 830 RNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIV 909 (1321)
T ss_dssp HHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHH
Confidence 999999999999998875 6799999999999998 54 3445566666666666666665554444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16196 396 IPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCA 475 (950)
Q Consensus 396 ~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~ 475 (950)
+.+..+..++..+...+..+...+....+.|.++|+++||.|++|+.+.++..+.-+...+...+......+...+....
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1321)
T 4f4c_A 910 AFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSV 989 (1321)
T ss_dssp HHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445556666788999999999999999999988887766655554444433333322222222
Q ss_pred hHH--HHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccccc
Q psy16196 476 PFL--VSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYS 553 (950)
Q Consensus 476 p~l--~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 553 (950)
..+ +.++.++++.+..+...+++..++..+..+.....|+..+....+.+.++.++.+||.++++.++..+...
T Consensus 990 ~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---- 1065 (1321)
T 4f4c_A 990 LYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS---- 1065 (1321)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC----
T ss_pred HHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc----
Confidence 111 12233445555544445666666666555555566888888899999999999999999997543211100
Q ss_pred cccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccccCCcccc
Q psy16196 554 FVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGR 633 (950)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (950)
.....
T Consensus 1066 ---------------------------------------------------------------~~~~~------------ 1070 (1321)
T 4f4c_A 1066 ---------------------------------------------------------------LAGEK------------ 1070 (1321)
T ss_dssp ---------------------------------------------------------------CCSBC------------
T ss_pred ---------------------------------------------------------------CCCCC------------
Confidence 00000
Q ss_pred cccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChh
Q psy16196 634 ILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKS 713 (950)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKS 713 (950)
....+.|+|+|++|+|+++ .+.++|+||||+|+|||++|||||+|||||
T Consensus 1071 -------------------------~~~~g~I~f~nVsf~Y~~~------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKS 1119 (1321)
T 4f4c_A 1071 -------------------------KKLYGKVIFKNVRFAYPER------PEIEILKGLSFSVEPGQTLALVGPSGCGKS 1119 (1321)
T ss_dssp -------------------------CCCCCCEEEEEEEECCTTS------CSSCSEEEEEEEECTTCEEEEECSTTSSTT
T ss_pred -------------------------CCCCCeEEEEEEEEeCCCC------CCCccccceeEEECCCCEEEEECCCCChHH
Confidence 1223579999999999752 245899999999999999999999999999
Q ss_pred HHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCC---CCChhHHHHHHHHhcCCch
Q psy16196 714 SLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK---THVPRRYNKVIDACALTPD 777 (950)
Q Consensus 714 TLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~---~~d~~~y~~Vi~ac~L~~D 777 (950)
||+++|+|+|+|++|+|.+|| +|+||||||+||+|||||||.||. +.++++.+++++.|+++++
T Consensus 1120 TL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~ 1199 (1321)
T 4f4c_A 1120 TVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNF 1199 (1321)
T ss_dssp SHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHH
Confidence 999999999999999999998 699999999999999999999994 3566778888899999999
Q ss_pred hhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 778 FEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 778 i~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.||+|+||.|||+|.||||||||||
T Consensus 1200 I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1200 IAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 999999999999999999999999999
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.2e-43 Score=452.66 Aligned_cols=458 Identities=18% Similarity=0.253 Sum_probs=320.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 236 ALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPL---WKGYFYAILLLVTSVVQTLLLSTYFDRMFRVG 312 (950)
Q Consensus 236 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~---~~g~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 312 (950)
.+.+.+++.++.++++.++..++..+.|+++..+++.+....... .....+++.++++.++..++.....+...+.+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 777 (1284)
T 3g5u_A 698 KLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAG 777 (1284)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888888888999999988765432211 11122222333333333332222223345778
Q ss_pred HHHHHHHHHHHHHHHhcccccccC--CCChhhHHHHHhhcccc-cch-HhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16196 313 MRMRSALISTIYRKALTISNNARK--ETTVGEIVNLMSVDAQR-MDI-TPYLNMLWSAPLQIGLALYFLWGILGPSVLAG 388 (950)
Q Consensus 313 ~~~r~~L~~~iy~K~L~l~~~~~~--~~~~G~ivnlms~Dv~r-~~~-~~~~~~l~~~pl~i~i~~~lL~~~lg~~~l~g 388 (950)
.++...++..+|+|+++++..+++ +.++|+++|++++|++. ... ...+..+....+.+++++.+++..-...+++.
T Consensus 778 ~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~ 857 (1284)
T 3g5u_A 778 EILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLL 857 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 888999999999999999999887 47899999999999998 443 33445555555555555554443322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 389 LAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAAT 468 (950)
Q Consensus 389 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~Rv~~~~E~L~gIk~IK~~~~E~~f~~~i~~~R~~El~~~~~~~~l~~~~ 468 (950)
++++++++.+..+..+...+...+..+..++..+...|.++|+++||.|++|+.+.++..+..+...+...+........
T Consensus 858 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1284)
T 3g5u_A 858 LAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGIT 937 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455556666666666677777888999999999999999999988887766554444333322222221
Q ss_pred HHHHHhhhH--HHHHHHHHhHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy16196 469 SFIWSCAPF--LVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDR 546 (950)
Q Consensus 469 ~~~~~~~p~--l~~~~~f~~y~~~~~~~~L~~~~aF~~lsl~~~l~~Pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 546 (950)
..+...... .+.++.++.+.+.. +.++....+..+.++.....|+..+....+.+.++..+.+|+.++++.++..+
T Consensus 938 ~~~~~~~~~~~~~~~~~~g~~lv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1015 (1284)
T 3g5u_A 938 FSFTQAMMYFSYAAAFRFGAYLVTQ--QLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEID 1015 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSS--SCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 111111111 22333455555543 34666666665555556667888888888889999999999999986543211
Q ss_pred CcccccccccccccccchhhhhhhhcccCCCCCCCCCCCCCCcchhhhhhhhhhchhhHHHHhhhhhhhhhhcccccccc
Q psy16196 547 GFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFF 626 (950)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (950)
.. +. .....
T Consensus 1016 ~~-----------------------------------~~-------------------------------~~~~~----- 1024 (1284)
T 3g5u_A 1016 SY-----------------------------------ST-------------------------------QGLKP----- 1024 (1284)
T ss_dssp SC-----------------------------------CS-------------------------------SCCCT-----
T ss_pred cc-----------------------------------cc-------------------------------ccccc-----
Confidence 10 00 00000
Q ss_pred cCCcccccccccCCCCcccccccccccccCcCCCCCCcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEc
Q psy16196 627 DTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVG 706 (950)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG 706 (950)
....+.|+++|++|+|+.. .+.++|+|+||+|++||.+||||
T Consensus 1025 --------------------------------~~~~g~i~~~~v~~~y~~~------~~~~~l~~vsl~i~~Ge~v~ivG 1066 (1284)
T 3g5u_A 1025 --------------------------------NMLEGNVQFSGVVFNYPTR------PSIPVLQGLSLEVKKGQTLALVG 1066 (1284)
T ss_dssp --------------------------------TTTSCCEEEEEEEBCCSCG------GGCCSBSSCCEEECSSSEEEEEC
T ss_pred --------------------------------cCCCCcEEEEEEEEECCCC------CCCeeecceeEEEcCCCEEEEEC
Confidence 1123569999999999741 23579999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCccHHHHHhcCCCC---ChhHHHHHHH
Q psy16196 707 SVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTH---VPRRYNKVID 770 (950)
Q Consensus 707 ~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIlfg~~~---d~~~y~~Vi~ 770 (950)
|+|||||||+++|+|+++|++|+|.++| +|+||||+|.+|++||||||.+|.+. ++++.+++++
T Consensus 1067 ~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~ 1146 (1284)
T 3g5u_A 1067 SSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146 (1284)
T ss_dssp SSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999987 59999999999999999999999753 4566677788
Q ss_pred HhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 771 ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 771 ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.+++++.++.+|+|++|.|||+|.+|||||||||
T Consensus 1147 ~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv 1180 (1284)
T 3g5u_A 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180 (1284)
T ss_dssp HHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH
T ss_pred HhCcHHHHHhCccccccccCCCCCccCHHHHHHH
Confidence 8889999999999999999999999999999999
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-33 Score=307.11 Aligned_cols=134 Identities=34% Similarity=0.558 Sum_probs=126.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.|+++|++|+|+. +.++|+||||+|++|++++||||+|||||||+++|+|+++|++|+|.++|
T Consensus 52 ~~i~~~~vs~~y~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFSYAD--------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEESST--------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEEcCC--------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH
Confidence 46999999999974 45799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+||||+|+|++|++||+|||.||.+ .+.++.+++++.+++.++++.+|+|++|.+|++|.+|||||||||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred HHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 4999999999999999999999975 566788899999999999999999999999999999999999999
No 12
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=2.3e-29 Score=265.02 Aligned_cols=134 Identities=40% Similarity=0.762 Sum_probs=125.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
.++++|++++|+. .+.++|+|+||+|++|++++|+||+|||||||+++|+|.++|++|+|.++|+|+|++|+|
T Consensus 6 ~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~ 78 (229)
T 2pze_A 6 EVVMENVTAFWEE-------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFS 78 (229)
T ss_dssp EEEEEEEEECSST-------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSC
T ss_pred eEEEEEEEEEeCC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCC
Confidence 5899999999964 246799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 744 WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 744 wL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++++|++|||.++..+++.+++++++++++.++++.+|.+++|.+++++.+|||||||||
T Consensus 79 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv 139 (229)
T 2pze_A 79 WIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 139 (229)
T ss_dssp CCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH
T ss_pred cccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 9999999999999876666677888899999999999999999999999999999999999
No 13
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=264.48 Aligned_cols=134 Identities=63% Similarity=1.042 Sum_probs=125.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
.++++|++++|+. .+.++|+|+||+|++|++++|+||+|||||||+++|+|.++|++|+|.++|+|+||+|+|
T Consensus 3 ~l~~~~l~~~y~~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~ 75 (237)
T 2cbz_A 3 SITVRNATFTWAR-------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA 75 (237)
T ss_dssp CEEEEEEEEESCT-------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC
T ss_pred eEEEEEEEEEeCC-------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC
Confidence 3889999999963 245799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 744 WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 744 wL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++++.|++|||.++..+++++++++.+++++.+++..+|.|++|.+++++.+|||||||||
T Consensus 76 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv 136 (237)
T 2cbz_A 76 WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 136 (237)
T ss_dssp CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH
T ss_pred cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999877666778899999999888999999999999999999999999999
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=1.8e-27 Score=253.19 Aligned_cols=135 Identities=29% Similarity=0.445 Sum_probs=123.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.|+++|++++|+. ++.++|+||||+|++|++++|+||+|||||||+++|+|.++|++|+|.++|
T Consensus 6 ~~~~~~~l~~~y~~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEEEEESST-------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH
T ss_pred CceeEEEEEEEeCC-------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 47999999999942 135799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|+|.+|+.|++|||.++.+ .++++.+++++.+++.+.++.+|+|+++.+++++.+|||||||||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred HHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 4999999999999999999999864 455667788888999999999999999999999999999999999
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=1.8e-27 Score=252.87 Aligned_cols=132 Identities=30% Similarity=0.529 Sum_probs=121.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+. +.++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~y~~--------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYDD--------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSSS--------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEEeCC--------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH
Confidence 689999999943 35799999999999999999999999999999999999999999999986
Q ss_pred ---eEEEEeccCcCCCccHHHHHhcC-C-CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 ---SIAFVPQQAWIQNATLRDNIVFG-K-THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ---~Iayv~Q~pwL~ngTIreNIlfg-~-~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|+|.+|++|++|||.++ . ..++++.+++++.+++.+.++.+|+|++|.+++++.+|||||||||
T Consensus 74 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv 148 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148 (243)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHH
Confidence 48999999999999999999998 3 3455677888999999999999999999999999999999999999
No 16
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=1e-26 Score=249.25 Aligned_cols=135 Identities=32% Similarity=0.511 Sum_probs=121.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++++|+.. ...++|+||||+|++|++++|+||+|||||||+++|+|.+++ +|+|.++|
T Consensus 16 ~~l~i~~l~~~y~~~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTC------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCCC------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCH
Confidence 369999999999641 124799999999999999999999999999999999999987 89999987
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCC-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|+|.+|+.|++|||.++.. .++++.+++++.+++.+.++.+|+|.+|.+++++.+|||||||||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp HHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred HHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 4999999999999999999999854 345567788888899888999999999999999999999999999
No 17
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.2e-26 Score=257.43 Aligned_cols=134 Identities=26% Similarity=0.427 Sum_probs=125.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..|+++|++++|+. .+.++|+||||+|++||+++|+||+||||||||++|.|+++ ++|+|.++|
T Consensus 18 ~~i~~~~l~~~y~~-------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSS-------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecC-------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh
Confidence 57999999999964 25679999999999999999999999999999999999998 999999987
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+||+|++.+|..|++|||.+.....+++.+++++.++|.+.++.+|.+++|.++++|.+|||||||||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv 164 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM 164 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH
Confidence 4999999999999999999987666677888999999999999999999999999999999999999999
No 18
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=3.4e-26 Score=248.23 Aligned_cols=130 Identities=38% Similarity=0.723 Sum_probs=107.0
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
..++++|++|.+ .++|+|+||+|++|++++|+||+|||||||+++|+|.++|++|+|.++|+|+|++|+
T Consensus 39 ~~l~~~~l~~~~-----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp -----------C-----------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSS
T ss_pred ceEEEEEEEEcC-----------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCC
Confidence 358999999852 368999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++|++|++|||. +..+++.+++++++.+++.+.++.+|.+++|.+++++.+|||||||||
T Consensus 108 ~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 108 SWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp CCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred CccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 9999999999999 655555567778888999888999999999999999999999999999
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=9.5e-26 Score=243.06 Aligned_cols=136 Identities=28% Similarity=0.445 Sum_probs=119.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++++|+.. .+.++|+||||+|++|++++|+||+|||||||+++|+|.++|++|+|.++|
T Consensus 15 ~~l~~~~l~~~y~~~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CCEEEEEEEECCTTC------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH
T ss_pred ceEEEEEEEEEeCCC------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH
Confidence 469999999999631 125799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCCccHHHHHhcCCCC-Ch-hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNATLRDNIVFGKTH-VP-RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ngTIreNIlfg~~~-d~-~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|+|.+|+.||+|||.++.+. .. +...+.++...+.+.++.+|+|.++.+++++.+|||||||||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv 165 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAV 165 (271)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHH
T ss_pred HHHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHH
Confidence 49999999999999999999998643 22 334455566677788999999999999999999999999999
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.88 E-value=3.8e-23 Score=222.48 Aligned_cols=122 Identities=28% Similarity=0.427 Sum_probs=101.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+. ..++|+||||+|++||+++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 7 ~l~i~~ls~~y~~--------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 7 ILKVEELNYNYSD--------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEECTT--------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHH
T ss_pred EEEEEEEEEEECC--------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccccc
Confidence 5899999999964 34699999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEeccC--cCCCccHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ------SIAFVPQQA--WIQNATLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ------~Iayv~Q~p--wL~ngTIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.||||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+..+ ....+||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG 147 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFG 147 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHH
Confidence 499999998 5789999999998632 222 34556666666644332 345689999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 148 qkQRv 152 (275)
T 3gfo_A 148 QKKRV 152 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99999
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.88 E-value=4.4e-23 Score=217.72 Aligned_cols=125 Identities=30% Similarity=0.394 Sum_probs=98.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+... ...++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~y~~~~-----~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEETT-----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCCCC-----cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH
Confidence 68999999997410 123699999999999999999999999999999999999999999999987
Q ss_pred -------eEEEEeccCcCCCc-cHHHHHhcCC------CCCh-h---HHHHHHHHhcCCchhhhCCCCCcccccCCCCCC
Q psy16196 735 -------SIAFVPQQAWIQNA-TLRDNIVFGK------THVP-R---RYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796 (950)
Q Consensus 735 -------~Iayv~Q~pwL~ng-TIreNIlfg~------~~d~-~---~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~L 796 (950)
.||||+|+|.++.. |++|||.++. .... + +..++++.++|.+.. .......|
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~L 146 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQL 146 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGS
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhC
Confidence 39999999999876 9999998742 1222 2 233444444553322 13456789
Q ss_pred CHHHhhcc
Q psy16196 797 SGGQKQRV 804 (950)
Q Consensus 797 SGGQKQRI 804 (950)
||||||||
T Consensus 147 SgGq~QRv 154 (235)
T 3tif_A 147 SGGQQQRV 154 (235)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999999
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=6e-23 Score=217.53 Aligned_cols=126 Identities=25% Similarity=0.459 Sum_probs=99.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEECC---------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHH
Confidence 4899999999953 4699999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCCc-cHHHHHhcCC-C-CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -----SIAFVPQQAWIQNA-TLRDNIVFGK-T-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -----~Iayv~Q~pwL~ng-TIreNIlfg~-~-~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|+|.++.+ |++|||.++. + .+.++.++.++.. ++.++ |.....+.+..+|||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~-----l~~~~-~l~~~~~~~~~~LSgGq~qrv 148 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-RLKERLKQLGGTLSGGEQQML 148 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCH-HHHTTTTSBSSSSCHHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHH-----HHHcc-cHhhHhcCChhhCCHHHHHHH
Confidence 29999999999887 9999999874 1 1222222221111 22222 222335567789999999999
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.88 E-value=8.6e-23 Score=211.64 Aligned_cols=120 Identities=21% Similarity=0.370 Sum_probs=101.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++++|+ + ++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 9 ~~l~~~~ls~~y~---------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEESS---------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGG
T ss_pred ceEEEEEEEEEeC---------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcC
Confidence 3699999999994 4 799999999999999999999999999999999999999999999988
Q ss_pred eEEEEeccCcCCCc-cHHHHHhcCC-----CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIAFVPQQAWIQNA-TLRDNIVFGK-----THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Iayv~Q~pwL~ng-TIreNIlfg~-----~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.|+|++|+|.++.+ |++|||.++. +.++++.+++++.++|.+ . +.+..+|||||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~-~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-----------L-KKKLGELSQGTIRRV 142 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-----------T-TSBGGGSCHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-----------C-CCChhhCCHHHHHHH
Confidence 48999999998876 9999998852 122345566666665432 2 456789999999999
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=9.7e-23 Score=217.31 Aligned_cols=122 Identities=30% Similarity=0.434 Sum_probs=101.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
.++++|++++|+. +.++|+|+||+|++|+.++|+||+|||||||+++|.|.++|++|+|....+|+|++|+|
T Consensus 4 ~l~i~~l~~~y~~--------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~ 75 (253)
T 2nq2_C 4 ALSVENLGFYYQA--------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFF 75 (253)
T ss_dssp EEEEEEEEEEETT--------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCC
T ss_pred eEEEeeEEEEeCC--------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCC
Confidence 4889999999962 34699999999999999999999999999999999999999999999888999999999
Q ss_pred cCC-CccHHHHHhcCCC-C-------C---hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 744 WIQ-NATLRDNIVFGKT-H-------V---PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 744 wL~-ngTIreNIlfg~~-~-------d---~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++ +.|++|||.++.. . . +++.+++++.++|.+..+ .+..+|||||||||
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLI 137 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHH
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHH
Confidence 887 7799999998641 1 1 234556666666654332 34678999999999
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.87 E-value=2e-22 Score=216.73 Aligned_cols=123 Identities=25% Similarity=0.415 Sum_probs=103.5
Q ss_pred EEEEeeEEEecCCCCCCCCCC--CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 665 LVIENGTFTWERNTEGEGAES--PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~--~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
++++|++++|..+ .. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~------~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 3 IEVVNVSHIFHRG------TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI 76 (266)
T ss_dssp EEEEEEEEEESTT------STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHH
T ss_pred EEEEEEEEEecCC------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHh
Confidence 7899999999620 11 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccC--cCCCccHHHHHhcCCCC------ChhHHHHHHHHhcCC--chhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 --SIAFVPQQA--WIQNATLRDNIVFGKTH------VPRRYNKVIDACALT--PDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 --~Iayv~Q~p--wL~ngTIreNIlfg~~~------d~~~y~~Vi~ac~L~--~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
+|+|++|+| .+++.|++|||.++... ..++.+++++.++|. +..+..| .+|||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~q 145 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKR 145 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHH
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHH
Confidence 489999996 67889999999987421 134567788888887 5554444 589999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
||
T Consensus 146 Rv 147 (266)
T 2yz2_A 146 RV 147 (266)
T ss_dssp HH
T ss_pred HH
Confidence 99
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.87 E-value=1.4e-22 Score=224.61 Aligned_cols=121 Identities=26% Similarity=0.468 Sum_probs=103.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++||+++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 4 ~l~i~~ls~~y~~---------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEECC---------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 4899999999953 5699999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcCCC-ccHHHHHhcCCCC-------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHH
Q psy16196 735 ------SIAFVPQQAWIQN-ATLRDNIVFGKTH-------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQ 800 (950)
Q Consensus 735 ------~Iayv~Q~pwL~n-gTIreNIlfg~~~-------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQ 800 (950)
+||||+|++-+|. .||+|||.||... ..++.+++++.++|.+..+..| ..|||||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq 143 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQ 143 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHH
Confidence 4899999999885 5999999998532 1235566777777765544443 5899999
Q ss_pred hhcc
Q psy16196 801 KQRV 804 (950)
Q Consensus 801 KQRI 804 (950)
||||
T Consensus 144 ~QRV 147 (359)
T 3fvq_A 144 QQRA 147 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9999
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.87 E-value=9e-23 Score=213.87 Aligned_cols=121 Identities=28% Similarity=0.367 Sum_probs=99.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~y~~---------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVIRG---------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEECC---------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH
Confidence 4889999999953 4699999999999999999999999999999999999999999999876
Q ss_pred --------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 --------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 --------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
+|+|++|+|.++. .|++|||.++.. .. +++.+++++.++|.+..+ .+..+|||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 143 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-----------RKPYELSG 143 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCH
Confidence 2999999998876 599999988531 11 234556666666654333 23468999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 144 Gq~qrv 149 (224)
T 2pcj_A 144 GEQQRV 149 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.87 E-value=2.4e-22 Score=215.70 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=103.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|+++.|.. .++|+||||+|++||+++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~---------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ---------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEeCC---------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH
Confidence 35899999999963 5799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcC-CCccHHHHHhcCCC-----CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 -----SIAFVPQQAWI-QNATLRDNIVFGKT-----HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 -----~Iayv~Q~pwL-~ngTIreNIlfg~~-----~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
.++|++|++-+ ++.|++|||.++.. .+.++.+++++.++|.+..+. +..+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QR 149 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQR 149 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHH
Confidence 39999999876 77899999998743 123456667777776543322 335799999999
Q ss_pred ccH
Q psy16196 804 VKW 806 (950)
Q Consensus 804 I~~ 806 (950)
|..
T Consensus 150 v~i 152 (266)
T 4g1u_C 150 VQL 152 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 844
No 29
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.87 E-value=1.3e-22 Score=226.37 Aligned_cols=121 Identities=30% Similarity=0.457 Sum_probs=102.7
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. ..+|+||||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~yg~---------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEECC---------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH
Confidence 4899999999963 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.||||+|++-+|. .||+|||.||.. .+ .++.+++++.++|.+..+..| .+|||||||||
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRV 142 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRV 142 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHH
Confidence 4999999999885 599999999732 22 234566677777765555444 58999999999
No 30
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.87 E-value=2.6e-22 Score=214.75 Aligned_cols=121 Identities=26% Similarity=0.347 Sum_probs=100.5
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 24 ~l~i~~l~~~y~~---------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSFGS---------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEECC---------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCcccc
Confidence 5999999999953 4699999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEeccCcCCCc-cHHHHHhcCC----CCC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 ------SIAFVPQQAWIQNA-TLRDNIVFGK----THV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 ------~Iayv~Q~pwL~ng-TIreNIlfg~----~~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
+|+||+|++.++.. |++|||.|+. ..+ +++.+++++.++|.+..+ .+..+||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG 163 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGG 163 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHH
Confidence 28999999988876 9999998852 122 234456666666654332 345689999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 164 qkQRv 168 (263)
T 2olj_A 164 QAQRV 168 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99999
No 31
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.86 E-value=2.1e-22 Score=223.14 Aligned_cols=126 Identities=28% Similarity=0.415 Sum_probs=103.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..|+++|++++|..+. ...++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 23 ~mi~v~~ls~~y~~~~-----~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp CCEEEEEEEEEEECSS-----SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred ceEEEEeEEEEeCCCC-----CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 4699999999997410 124689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeccCcCCCc-cHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 --------SIAFVPQQAWIQNA-TLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 --------~Iayv~Q~pwL~ng-TIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
+||||+|++.++.. ||+|||.|+.. .+ .++.+++++.++|.+..+..| .+|||
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSG 166 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSG 166 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCH
Confidence 49999999988865 99999998621 22 234566677777765444443 58999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 167 GqkQRV 172 (366)
T 3tui_C 167 GQKQRV 172 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 32
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=4.4e-22 Score=212.32 Aligned_cols=122 Identities=17% Similarity=0.306 Sum_probs=102.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.++++|++++|.. .++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 14 ~~l~i~~l~~~y~~---------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH
T ss_pred CeEEEEEEEEEECC---------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHH
Confidence 57999999999953 4699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCC---CCh----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhh
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKT---HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~---~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQ 802 (950)
.|+|++|+|.++.. |++|||.++.. .+. ++.+++++.++|.+..+ .+..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~q 153 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVR 153 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHH
Confidence 49999999988876 99999987531 121 34556677777754433 345689999999
Q ss_pred cc
Q psy16196 803 RV 804 (950)
Q Consensus 803 RI 804 (950)
||
T Consensus 154 Rv 155 (256)
T 1vpl_A 154 KL 155 (256)
T ss_dssp HH
T ss_pred HH
Confidence 99
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.86 E-value=4.5e-22 Score=221.28 Aligned_cols=121 Identities=25% Similarity=0.392 Sum_probs=104.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++|++++|+||+||||||||++|.|..+|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEECC---------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh
Confidence 3889999999953 4689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCCC-------ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKTH-------VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~~-------d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|++.+|. .|++|||.|+... .+++.+++++.++|.+..+..| .+|||||||||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRv 142 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRV 142 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 4999999998885 5999999997432 1245677788888866555554 48999999999
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.86 E-value=3.1e-22 Score=221.98 Aligned_cols=123 Identities=24% Similarity=0.403 Sum_probs=103.4
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
..++++|++++|+. +.++|+||||+|++|++++|+||+||||||||++|.|..+|++|+|.++|
T Consensus 13 ~~l~~~~l~~~y~g--------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp EEEEEEEEEECCTT--------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG
T ss_pred ceEEEEEEEEEEcC--------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh
Confidence 46999999999932 34699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhc
Q psy16196 735 ---SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 735 ---~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
+|+||+|++.+|. .|++|||.|+.. .+ +++.+++++.++|.+..+..| .+||||||||
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QR 153 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQR 153 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHH
Confidence 4999999998886 599999998632 22 235566777777765555444 5899999999
Q ss_pred c
Q psy16196 804 V 804 (950)
Q Consensus 804 I 804 (950)
|
T Consensus 154 v 154 (355)
T 1z47_A 154 V 154 (355)
T ss_dssp H
T ss_pred H
Confidence 9
No 35
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.86 E-value=3.9e-22 Score=213.53 Aligned_cols=121 Identities=26% Similarity=0.333 Sum_probs=98.8
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++|+.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 7 ~l~i~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYFGE---------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEETT---------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEECC---------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 5899999999953 4699999999999999999999999999999999999999999999986
Q ss_pred -----eEEEEeccCcCCC-ccHHHHHhcCCCC----------------Ch----hHHHHHHHHhcCCchhhhCCCCCccc
Q psy16196 735 -----SIAFVPQQAWIQN-ATLRDNIVFGKTH----------------VP----RRYNKVIDACALTPDFEMLPAGDSTE 788 (950)
Q Consensus 735 -----~Iayv~Q~pwL~n-gTIreNIlfg~~~----------------d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~ 788 (950)
.|+||+|++.++. .|++|||.++... +. ++.+++++.++|. ..
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~ 146 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-----------HL 146 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-----------GG
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-----------hh
Confidence 3999999998875 6999999986321 11 1233444444443 33
Q ss_pred ccCCCCCCCHHHhhcc
Q psy16196 789 IGEKGINLSGGQKQRV 804 (950)
Q Consensus 789 IGe~G~~LSGGQKQRI 804 (950)
...+..+|||||||||
T Consensus 147 ~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 147 YDRKAGELSGGQMKLV 162 (257)
T ss_dssp TTSBGGGSCHHHHHHH
T ss_pred hCCCchhCCHHHHHHH
Confidence 4556679999999999
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.86 E-value=3.4e-22 Score=222.44 Aligned_cols=121 Identities=27% Similarity=0.436 Sum_probs=102.0
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++|++++|+||+||||||||++|.|..+|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFGN---------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESSS---------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEECC---------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh
Confidence 3889999999953 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|++-+|. .|++|||.|+.. .. .++.+++++.++|.+..+..| .+|||||||||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRv 142 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRV 142 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHH
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHH
Confidence 4999999999886 599999999631 22 234566777777765555444 58999999999
No 37
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.86 E-value=3.3e-22 Score=214.43 Aligned_cols=121 Identities=22% Similarity=0.326 Sum_probs=100.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 6 ~l~i~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEECC---------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccc
Confidence 5899999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -----------------eEEEEeccCcCCCc-cHHHHHhcCC----CCC----hhHHHHHHHHhcCCch-hhhCCCCCcc
Q psy16196 735 -----------------SIAFVPQQAWIQNA-TLRDNIVFGK----THV----PRRYNKVIDACALTPD-FEMLPAGDST 787 (950)
Q Consensus 735 -----------------~Iayv~Q~pwL~ng-TIreNIlfg~----~~d----~~~y~~Vi~ac~L~~D-i~~Lp~Gd~T 787 (950)
.|+||+|++.++.. |++|||.++. ..+ +++.+++++.++|.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------- 148 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-------- 148 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT--------
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc--------
Confidence 28999999988876 9999998852 122 2344566666666544 33
Q ss_pred cccCCCCCCCHHHhhcc
Q psy16196 788 EIGEKGINLSGGQKQRV 804 (950)
Q Consensus 788 ~IGe~G~~LSGGQKQRI 804 (950)
.+..+|||||||||
T Consensus 149 ---~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 149 ---KYPVHLSGGQQQRV 162 (262)
T ss_dssp ---SCGGGSCHHHHHHH
T ss_pred ---CCcccCCHHHHHHH
Confidence 34568999999999
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.86 E-value=6.8e-22 Score=220.87 Aligned_cols=121 Identities=24% Similarity=0.393 Sum_probs=98.1
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|.. .++|+||||+|++|++++|+||+||||||||++|.|.++|++|+|.++|
T Consensus 11 ~l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFGN---------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEECC---------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh
Confidence 4899999999953 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeccCcCCC-ccHHHHHhcCCCC---Ch----hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 --SIAFVPQQAWIQN-ATLRDNIVFGKTH---VP----RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 --~Iayv~Q~pwL~n-gTIreNIlfg~~~---d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|++.+|. .|++|||.|+... .. ++.+++++.++|.+..+..| .+|||||||||
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRv 150 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRV 150 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHH
Confidence 4999999998885 5999999998542 21 34566777777766555544 58999999999
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.86 E-value=5e-22 Score=220.18 Aligned_cols=119 Identities=30% Similarity=0.495 Sum_probs=102.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|.. . +|+||||+|++|++++|+||+||||||||++|.|..+|++|+|.++|
T Consensus 2 l~~~~l~~~y~~---------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWKN---------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEECSS---------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEECC---------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhh
Confidence 678999999953 4 99999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCCc-cHHHHHhcCCC----CChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQNA-TLRDNIVFGKT----HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~ng-TIreNIlfg~~----~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+||+|++.+|.. |++|||.|+.. ..+++.+++++.++|++..+..| .+|||||||||
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 136 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRV 136 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 48999999999875 99999999632 12256677788887765555444 58999999999
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.85 E-value=6.6e-22 Score=220.12 Aligned_cols=121 Identities=26% Similarity=0.399 Sum_probs=102.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCC--cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPP--TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~--vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g------- 734 (950)
.++++|++++|.. .+ +|+||||+|++|++++|+||+||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~l~i~~l~~~y~~---------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGG---------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECC---------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc
Confidence 3889999999963 45 99999999999999999999999999999999999999999999876
Q ss_pred ---------eEEEEeccCcCCCc-cHHHHHhcCCCC---C----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCC
Q psy16196 735 ---------SIAFVPQQAWIQNA-TLRDNIVFGKTH---V----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797 (950)
Q Consensus 735 ---------~Iayv~Q~pwL~ng-TIreNIlfg~~~---d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LS 797 (950)
+|+||+|++-+|.. |++|||.|+... + +++.+++++.++|.+..+..| .+||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LS 142 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELS 142 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSC
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCC
Confidence 38999999998865 999999997532 2 234566777777765555444 5899
Q ss_pred HHHhhcc
Q psy16196 798 GGQKQRV 804 (950)
Q Consensus 798 GGQKQRI 804 (950)
|||||||
T Consensus 143 GGq~QRv 149 (353)
T 1oxx_K 143 GAQQQRV 149 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999999
No 41
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=7.4e-22 Score=208.64 Aligned_cols=117 Identities=26% Similarity=0.424 Sum_probs=96.9
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|.. +|+||||+|++ ++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~y~~-----------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLGN-----------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEETT-----------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEeCC-----------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhh
Confidence 578999999942 59999999999 99999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCCc-cHHHHHhcCCCCC-----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 -SIAFVPQQAWIQNA-TLRDNIVFGKTHV-----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 -~Iayv~Q~pwL~ng-TIreNIlfg~~~d-----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+|++|++.++.. |++|||.|+.... +++.+++++.++|.+..+. +..+|||||||||
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv 135 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-----------KPARLSGGERQRV 135 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTC-----------CGGGSCHHHHHHH
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHH
Confidence 48999999998876 9999999975421 2344555666666443332 3358999999999
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=5.9e-22 Score=214.06 Aligned_cols=121 Identities=22% Similarity=0.254 Sum_probs=98.4
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++|+. .++|+||||+|++|++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 21 ~l~~~~l~~~y~~---------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CC
T ss_pred eEEEEeEEEEECC---------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCC
Confidence 5899999999953 4699999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEeccCcC-CCc--cHHHHHhcCCC--------CCh---hHHHHHHHHhcCCchhhhCCCCCcccccCCCC
Q psy16196 735 ------SIAFVPQQAWI-QNA--TLRDNIVFGKT--------HVP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794 (950)
Q Consensus 735 ------~Iayv~Q~pwL-~ng--TIreNIlfg~~--------~d~---~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~ 794 (950)
+|+|++|++.+ ++. |++|||.++.. ..+ ++.+++++.++|.+.. ..+..
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~ 160 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIG 160 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChh
Confidence 38999999865 554 99999998741 122 2344555666554332 34556
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
+|||||||||
T Consensus 161 ~LSgGqkqRv 170 (279)
T 2ihy_A 161 YLSTGEKQRV 170 (279)
T ss_dssp GSCHHHHHHH
T ss_pred hCCHHHHHHH
Confidence 8999999999
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.85 E-value=3.3e-21 Score=204.61 Aligned_cols=117 Identities=27% Similarity=0.394 Sum_probs=99.2
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC---------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--------- 734 (950)
.++++|++++ ++|+|+||+|++|+.++|+||+|||||||+++|.|.++|+ |+|.++|
T Consensus 4 ~l~~~~l~~~-------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES-------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET-------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHH
T ss_pred EEEEEceEEE-------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHH
Confidence 3789999873 4899999999999999999999999999999999999999 9999987
Q ss_pred ----eEEEEeccCcCCCc-cHHHHHhcCCCC--ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 735 ----SIAFVPQQAWIQNA-TLRDNIVFGKTH--VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 735 ----~Iayv~Q~pwL~ng-TIreNIlfg~~~--d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
+|+|++|++.++.. |++|||.++... ++++.+++++.++|.+.. ..+..+|||||||||.
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 136 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVR 136 (249)
T ss_dssp HHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHH
T ss_pred HHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHH
Confidence 39999999998765 999999997532 345667777877775443 2456789999999983
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.84 E-value=1.3e-21 Score=209.29 Aligned_cols=122 Identities=26% Similarity=0.342 Sum_probs=101.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|+... ...++|+|+||+|+ |+.++|+||+|||||||+++|.|.+ |++|+|.++|
T Consensus 2 l~~~~l~~~y~~~~-----~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-----YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEET-----TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCCC-----ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhh
Confidence 67899999996300 01569999999999 9999999999999999999999999 9999999988
Q ss_pred eEE-EEeccCcCCCccHHHHHhcCC---CCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 735 SIA-FVPQQAWIQNATLRDNIVFGK---THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 735 ~Ia-yv~Q~pwL~ngTIreNIlfg~---~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+|+ |++|+|.+ +.|++|||.++. ..++++.+++++..+|.. .....+..+|||||||||
T Consensus 75 ~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 75 RYSTNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp TEEECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHH
T ss_pred heEEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHH
Confidence 599 99999999 999999998863 234556667777766651 223456779999999999
No 45
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.84 E-value=2.1e-21 Score=217.40 Aligned_cols=120 Identities=25% Similarity=0.386 Sum_probs=101.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g---------- 734 (950)
++++|++++|.. .++|+||||+|++|++++|+||+||||||||++|.|..+|++|+|.++|
T Consensus 4 l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 4 VRLVDVWKVFGE---------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTE
T ss_pred EEEEeEEEEECC---------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccc
Confidence 789999999953 4699999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEeccCcCCC-ccHHHHHhcCCC---CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -------SIAFVPQQAWIQN-ATLRDNIVFGKT---HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -------~Iayv~Q~pwL~n-gTIreNIlfg~~---~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
+|+||+|++.+|. .|++|||.|+.. .. +++.+++++.++|.+..+..| .+||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGG 143 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGG 143 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHH
Confidence 3899999998874 699999999632 22 234566777777765554444 589999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 144 q~QRv 148 (372)
T 1g29_1 144 QRQRV 148 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99999
No 46
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=2.3e-24 Score=234.02 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=89.7
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCc
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pw 744 (950)
|+++|++|.|+. ++|+|+||+|++|++++||||+|||||||+++|+|++ +|+| ++|++|+|+
T Consensus 102 i~~~~vs~~y~~----------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~ 163 (305)
T 2v9p_A 102 FNYQNIELITFI----------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSH 163 (305)
T ss_dssp HHHTTCCHHHHH----------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSG
T ss_pred EEEEEEEEEcCh----------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccc
Confidence 667889998852 5899999999999999999999999999999999998 8988 678999999
Q ss_pred CCCccHHH-HHhcCCCCChhHHHHHHHHhcCCchhhh-CCCCCcccccCCCCCCCHHHhhc
Q psy16196 745 IQNATLRD-NIVFGKTHVPRRYNKVIDACALTPDFEM-LPAGDSTEIGEKGINLSGGQKQR 803 (950)
Q Consensus 745 L~ngTIre-NIlfg~~~d~~~y~~Vi~ac~L~~Di~~-Lp~Gd~T~IGe~G~~LSGGQKQR 803 (950)
+|++|++| ||.++...++ ++.+.++. ||+|++ |.+||||||||
T Consensus 164 lf~~ti~~~ni~~~~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR 208 (305)
T 2v9p_A 164 FWLASLADTRAALVDDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK 208 (305)
T ss_dssp GGGGGGTTCSCEEEEEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC
T ss_pred cccccHHHHhhccCccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH
Confidence 99999998 9999743322 12345565 888877 78999999999
No 47
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.82 E-value=3.6e-21 Score=205.17 Aligned_cols=122 Identities=21% Similarity=0.254 Sum_probs=91.3
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC--CcccCCeeEeCC-------
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKG------- 734 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe--~~~~~G~I~i~g------- 734 (950)
.++++|++++|.. .++|+||||+|++|++++|+||+|||||||+++|.|. ++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASIDG---------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEECC---------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC
Confidence 3789999999953 4699999999999999999999999999999999998 899999999987
Q ss_pred -------eEEEEeccCcCCCc-cHHHHHhcCCC------CC----hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCC-
Q psy16196 735 -------SIAFVPQQAWIQNA-TLRDNIVFGKT------HV----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN- 795 (950)
Q Consensus 735 -------~Iayv~Q~pwL~ng-TIreNIlfg~~------~d----~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~- 795 (950)
.++|++|+|.++.+ |++||+.++.. .. .++.+++++..+|..++.. . +-.+
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~------~----~~~~~ 143 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS------R----YLNEG 143 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG------S----BTTCC
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc------C----CcccC
Confidence 27899999998875 99999987521 11 1234555666666322211 1 1124
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 144 LSgGqkQrv 152 (250)
T 2d2e_A 144 FSGGEKKRN 152 (250)
T ss_dssp ----HHHHH
T ss_pred CCHHHHHHH
Confidence 999999999
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.81 E-value=3.2e-20 Score=199.62 Aligned_cols=122 Identities=24% Similarity=0.303 Sum_probs=94.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC--CcccCCeeEeCC------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKG------ 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe--~~~~~G~I~i~g------ 734 (950)
..++++|++++|.. .++|+||||+|++|++++|+||+|||||||+++|.|. ++|++|+|.++|
T Consensus 19 ~~l~~~~l~~~y~~---------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~ 89 (267)
T 2zu0_C 19 HMLSIKDLHVSVED---------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89 (267)
T ss_dssp -CEEEEEEEEEETT---------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS
T ss_pred ceEEEEeEEEEECC---------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC
Confidence 46999999999953 4699999999999999999999999999999999998 578999999987
Q ss_pred --------eEEEEeccCcCCCc-cHHHHHhcCC---------C-CCh----hHHHHHHHHhcCCchhhhCCCCCcccccC
Q psy16196 735 --------SIAFVPQQAWIQNA-TLRDNIVFGK---------T-HVP----RRYNKVIDACALTPDFEMLPAGDSTEIGE 791 (950)
Q Consensus 735 --------~Iayv~Q~pwL~ng-TIreNIlfg~---------~-~d~----~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe 791 (950)
.|+|++|+|.++.+ |++||+.++. + .+. ++.+++++..+|.++ ..+
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~ 158 (267)
T 2zu0_C 90 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED-----------LLT 158 (267)
T ss_dssp CHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT-----------TTT
T ss_pred CHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh-----------Hhc
Confidence 28999999988765 8999997532 1 121 233444555555322 222
Q ss_pred CCC--CCCHHHhhcc
Q psy16196 792 KGI--NLSGGQKQRV 804 (950)
Q Consensus 792 ~G~--~LSGGQKQRI 804 (950)
+.. +|||||||||
T Consensus 159 ~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRN 173 (267)
T ss_dssp SBTTTTCCHHHHHHH
T ss_pred CCcccCCCHHHHHHH
Confidence 322 5999999999
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.66 E-value=7.6e-17 Score=191.97 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=97.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
..++++|+++.|.+ ..|+++||+|++||.++|+||+|||||||+++|.|.++|++|+|.++.+|||++|+
T Consensus 356 ~~l~~~~l~~~~~~----------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~ 425 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY 425 (607)
T ss_dssp EEEEECCEEEECSS----------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSS
T ss_pred eEEEEeceEEEecc----------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecC
Confidence 35889999999853 46999999999999999999999999999999999999999999988899999999
Q ss_pred CcC-CCccHHHHHhcC-C-CC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AWI-QNATLRDNIVFG-K-TH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pwL-~ngTIreNIlfg-~-~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+.. ++.|++||+.+. . .+ ++++.+++++..++.+.. ..+-.+|||||||||
T Consensus 426 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-----------DRNVEDLSGGELQRV 480 (607)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-----------TSBGGGCCHHHHHHH
T ss_pred ccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHH
Confidence 865 678999998764 1 11 233445566666554322 233458999999999
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.65 E-value=7.5e-17 Score=190.11 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=94.6
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
..++++|+++.|.+ ..|+++||+|++||.++|+||+|||||||+++|.|.++|++|+|.+..+|+|++|+
T Consensus 286 ~~l~~~~l~~~~~~----------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~ 355 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQY 355 (538)
T ss_dssp EEEEECCEEEEETT----------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSS
T ss_pred eEEEEeeEEEEECC----------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecC
Confidence 35889999999853 36999999999999999999999999999999999999999999998889999999
Q ss_pred CcC-CCccHHHHHhcC-C-CC-ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AWI-QNATLRDNIVFG-K-TH-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pwL-~ngTIreNIlfg-~-~~-d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+.. ++.|++||+... . .+ +.++.+++++..++. .....+..+|||||||||
T Consensus 356 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 356 IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-----------DLYDREVNELSGGELQRV 410 (538)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-----------GGTTSBGGGCCHHHHHHH
T ss_pred CcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHH
Confidence 865 678999998753 1 11 122223333333332 223345568999999999
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.65 E-value=1.5e-16 Score=186.91 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=95.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-eEEEEec
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQ 741 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-~Iayv~Q 741 (950)
..++++|++..|.+ ..|+++||+|++||+++|+||+|||||||+++|.|.++|++|+|.+++ .|+|++|
T Consensus 268 ~~l~~~~l~~~~~~----------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337 (538)
T ss_dssp EEEEECCEEEEETT----------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECS
T ss_pred ceEEEcceEEEECC----------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeech
Confidence 35788999988853 468888999999999999999999999999999999999999999886 6999999
Q ss_pred cCcC-CCccHHHHHhcCCC-C---ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 742 QAWI-QNATLRDNIVFGKT-H---VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 742 ~pwL-~ngTIreNIlfg~~-~---d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++.. +..|++||+.+... + ...+.+++++..+|.+. ......+|||||||||
T Consensus 338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv 394 (538)
T 3ozx_A 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKL 394 (538)
T ss_dssp SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHH
T ss_pred hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHH
Confidence 9764 57899999986422 1 22233444444444332 2334568999999999
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.64 E-value=2e-16 Score=194.36 Aligned_cols=85 Identities=32% Similarity=0.514 Sum_probs=74.6
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--eEEEEec
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQ 741 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g--~Iayv~Q 741 (950)
.++++|++|+|+. .+.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++| +|+|++|
T Consensus 671 mL~v~nLs~~Y~g-------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q 743 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743 (986)
T ss_dssp EEEEEEEEECCTT-------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECH
T ss_pred eEEEEeeEEEeCC-------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeecc
Confidence 5899999999964 235799999999999999999999999999999999999999999999986 6999999
Q ss_pred cCcC-----CCccHHHHHh
Q psy16196 742 QAWI-----QNATLRDNIV 755 (950)
Q Consensus 742 ~pwL-----~ngTIreNIl 755 (950)
++.. .+.|+++||.
T Consensus 744 ~~~~~l~~~~~~t~~e~i~ 762 (986)
T 2iw3_A 744 HAFAHIESHLDKTPSEYIQ 762 (986)
T ss_dssp HHHHHGGGCTTSCHHHHHH
T ss_pred chhhhhhcccccCHHHHHH
Confidence 8742 2457777764
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.56 E-value=2.7e-15 Score=178.58 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=91.7
Q ss_pred EeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee---------EeCC----
Q psy16196 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV---------NTKG---- 734 (950)
Q Consensus 668 ~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I---------~i~g---- 734 (950)
+|++++|.. ..++|+|+| +|++||.++|+||+|||||||+++|.|+++|++|++ .++|
T Consensus 95 ~~ls~~yg~--------~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~ 165 (607)
T 3bk7_A 95 EDCVHRYGV--------NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165 (607)
T ss_dssp GSEEEECST--------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHH
T ss_pred CCeEEEECC--------CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehh
Confidence 889999964 336899999 999999999999999999999999999999999996 2333
Q ss_pred -----------eEEEEecc----CcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -----------SIAFVPQQ----AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -----------~Iayv~Q~----pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.++|++|. |.++.+|++||+..... .++.+++++..+|.+..+.. -.+||||
T Consensus 166 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~--~~~~~~~L~~lgL~~~~~~~-----------~~~LSGG 232 (607)
T 3bk7_A 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELENVLDRE-----------LHQLSGG 232 (607)
T ss_dssp HHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC--SSCHHHHHHHTTCTTGGGSB-----------GGGCCHH
T ss_pred hhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH--HHHHHHHHHHcCCCchhCCC-----------hhhCCHH
Confidence 37888886 34456799999976332 34567888888876544332 3479999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 233 ekQRv 237 (607)
T 3bk7_A 233 ELQRV 237 (607)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99999
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.4e-15 Score=175.67 Aligned_cols=118 Identities=23% Similarity=0.355 Sum_probs=92.4
Q ss_pred EeeEEEecCCCCCCCCCCCCcccceeEEeeCC-----eEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREG-----TLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 668 ~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G-----~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
++.+|+|+. ...+++|+||++++| |.++|+||+|||||||+++|.|..+|++|+..-.-.++|++|+
T Consensus 350 ~~~~~~y~~--------~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~ 421 (608)
T 3j16_B 350 ASRAFSYPS--------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK 421 (608)
T ss_dssp SSSCCEECC--------EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSS
T ss_pred cceeEEecC--------cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccc
Confidence 566777864 345799999999999 7799999999999999999999999999986444579999999
Q ss_pred Cc-CCCccHHHHHhcC---CCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 743 AW-IQNATLRDNIVFG---KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 743 pw-L~ngTIreNIlfg---~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+. .++.|++||+... ...+++..+++++..+|.+..+ ..-.+|||||||||
T Consensus 422 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGqkQRv 476 (608)
T 3j16_B 422 IAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-----------QEVQHLSGGELQRV 476 (608)
T ss_dssp CCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-----------SBSSSCCHHHHHHH
T ss_pred ccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHH
Confidence 65 5678999998643 2234455567777777654332 23458999999999
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.52 E-value=6.1e-15 Score=173.83 Aligned_cols=115 Identities=26% Similarity=0.307 Sum_probs=90.0
Q ss_pred EeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee---------EeCC----
Q psy16196 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV---------NTKG---- 734 (950)
Q Consensus 668 ~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I---------~i~g---- 734 (950)
+|++++|.. ..++|+|+| +|++||.++|+||+|||||||+++|.|+++|++|++ .++|
T Consensus 25 ~~ls~~yg~--------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~ 95 (538)
T 1yqt_A 25 EDCVHRYGV--------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95 (538)
T ss_dssp CCEEEECST--------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHH
T ss_pred cCcEEEECC--------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHH
Confidence 588999964 236899999 999999999999999999999999999999999995 2333
Q ss_pred -----------eEEEEeccCc----CCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH
Q psy16196 735 -----------SIAFVPQQAW----IQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799 (950)
Q Consensus 735 -----------~Iayv~Q~pw----L~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG 799 (950)
.++|++|... ++.+|++||+..... .++.+++++..++.++.+. .-.+||||
T Consensus 96 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~--~~~~~~~l~~lgl~~~~~~-----------~~~~LSgG 162 (538)
T 1yqt_A 96 NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE--TGKLEEVVKALELENVLER-----------EIQHLSGG 162 (538)
T ss_dssp HHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS--SSCHHHHHHHTTCTTTTTS-----------BGGGCCHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH--HHHHHHHHHHcCCChhhhC-----------ChhhCCHH
Confidence 3789998743 344699999865322 3456788888877544332 23579999
Q ss_pred Hhhcc
Q psy16196 800 QKQRV 804 (950)
Q Consensus 800 QKQRI 804 (950)
|||||
T Consensus 163 ekQRv 167 (538)
T 1yqt_A 163 ELQRV 167 (538)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99999
No 56
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.47 E-value=2e-15 Score=157.55 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=63.8
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC-------------CeEEEEeccCcC---------
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK-------------GSIAFVPQQAWI--------- 745 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~-------------g~Iayv~Q~pwL--------- 745 (950)
.|+||||+|++|++++|+||+|||||||+++|+|++ | |+|.+. ..++|++|++.+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 599999999999999999999999999999999998 4 888761 257899998744
Q ss_pred --CCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccH
Q psy16196 746 --QNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806 (950)
Q Consensus 746 --~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~ 806 (950)
+++++++| .+|.+ .+..+++++++.+ ..++ .+||||||||+..
T Consensus 89 ~l~~~~~~~~-~~g~~--~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i 133 (218)
T 1z6g_A 89 FLEYDNYANN-FYGTL--KSEYDKAKEQNKI------------CLFE---MNINGVKQLKKST 133 (218)
T ss_dssp EEEEEEETTE-EEEEE--HHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCS
T ss_pred hhhhhhcccc-cCCCc--HHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHh
Confidence 44555666 44433 2345555554322 1222 6899999999855
No 57
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=6.3e-16 Score=173.57 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=98.7
Q ss_pred EEEeeEEE---ecCCCCCCCCCCCCcc---------cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC
Q psy16196 666 VIENGTFT---WERNTEGEGAESPPTL---------QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733 (950)
Q Consensus 666 ~~~~~sf~---w~~~~~~~~~~~~~vL---------~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~ 733 (950)
.|+|++|+ |++ .++++| +++||.|++|+.++|+||+|||||||+++|+|++++.+|.|.++
T Consensus 137 ~f~~v~f~~~~Y~~-------~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 137 FFKHVRPMSKSLTP-------FEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTSCCCCSCSCCCH-------HHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CcCccccccccccc-------hhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 67788888 743 123455 99999999999999999999999999999999999999999886
Q ss_pred C-----------eEEEEe-ccCcC---CCccHHHHHhcCCCCChhHHHHHHHH---hcCCchhhhCCCCCcccccCCCCC
Q psy16196 734 G-----------SIAFVP-QQAWI---QNATLRDNIVFGKTHVPRRYNKVIDA---CALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 734 g-----------~Iayv~-Q~pwL---~ngTIreNIlfg~~~d~~~y~~Vi~a---c~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
| .++|++ |++.+ +..|+++||..+...+++. .++.+ .+..+.++.+|.|.+|.+|+-+.+
T Consensus 210 ~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~--~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~ 287 (361)
T 2gza_A 210 DVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR--ILLAELRGGEAYDFINVAASGHGGSITSCHAG 287 (361)
T ss_dssp SSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE--EEESCCCSTHHHHHHHHHHTTCCSCEEEEECS
T ss_pred CccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE--EEEcCchHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4 589999 99886 8899999999876543321 11111 122346888999999999999999
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
-..++.+|+
T Consensus 288 ~~~~~~~Rl 296 (361)
T 2gza_A 288 SCELTFERL 296 (361)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 889999998
No 58
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.44 E-value=1.7e-15 Score=151.07 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCccc---CCeeEeCC-----------------eEE----EEeccCcCCCccHHHHHh
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKI---SGRVNTKG-----------------SIA----FVPQQAWIQNATLRDNIV 755 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~---~G~I~i~g-----------------~Ia----yv~Q~pwL~ngTIreNIl 755 (950)
+.++|||++|||||||+++|+|++++. .|.|.++| .++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 89998764 244 778888776 221
Q ss_pred cCCCCChhHHHHHHHHhcCCchhhh-CCCCCcccccCCCCCCCHHHhhcc
Q psy16196 756 FGKTHVPRRYNKVIDACALTPDFEM-LPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 756 fg~~~d~~~y~~Vi~ac~L~~Di~~-Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+ +++ . .+++++.++. || |++|.|||+ |||||||||
T Consensus 77 -~---~~~----~--~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri 112 (171)
T 2f1r_A 77 -V---SEE----E--GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRI 112 (171)
T ss_dssp -C---CHH----H--HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEE
T ss_pred -C---Chh----h--hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEE
Confidence 1 111 1 6688888998 99 999999996 999999999
No 59
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.43 E-value=4.1e-15 Score=163.15 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=88.5
Q ss_pred CCcEEEEeeEEEecCCCCCCCCCCCCcccceeEE-----------------------eeCCeEEEEEcCCCCChhHHHHH
Q psy16196 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMR-----------------------VREGTLVAIVGSVGAGKSSLVSA 718 (950)
Q Consensus 662 ~~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~-----------------------i~~G~lvaIVG~vGSGKSTLL~a 718 (950)
++.|+++|+++.|. |+++++++. +++|++++|+||+|||||||+++
T Consensus 41 ~~~i~~~~v~~~y~-----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp TCCCCHHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEeeehhhhhh-----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHH
Confidence 45689999999985 366777664 89999999999999999999999
Q ss_pred HcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCC----C--CChhHHHHHHHHhcCCchhhhCCCCCc-ccccC
Q psy16196 719 LCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGK----T--HVPRRYNKVIDACALTPDFEMLPAGDS-TEIGE 791 (950)
Q Consensus 719 LLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~----~--~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~-T~IGe 791 (950)
|.|.+++..|. .+|+|++|++.++..|++||+.+.. + +|.+...++++.. ..|.. ..+
T Consensus 110 L~gll~~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l---------~~~~~~~~~-- 174 (312)
T 3aez_A 110 LQALLARWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV---------KSGSDYACA-- 174 (312)
T ss_dssp HHHHHHTSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH---------HTTCSCEEE--
T ss_pred HHhhccccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh---------CCCcccCCc--
Confidence 99999998775 4699999999999889999997532 2 2333344444333 23332 333
Q ss_pred CCCCCCHHHhhcc
Q psy16196 792 KGINLSGGQKQRV 804 (950)
Q Consensus 792 ~G~~LSGGQKQRI 804 (950)
-.||||||||+
T Consensus 175 --~~lS~G~~qRv 185 (312)
T 3aez_A 175 --PVYSHLHYDII 185 (312)
T ss_dssp --EEEETTTTEEE
T ss_pred --ccCChhhhhhh
Confidence 47999999998
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.42 E-value=2.4e-13 Score=167.19 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=86.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc-CCCcccCCee-EeCCeEEEEe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC-GEMDKISGRV-NTKGSIAFVP 740 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL-Ge~~~~~G~I-~i~g~Iayv~ 740 (950)
..+...|++++|+. .++|+|+||+|++|+.++|+||+|||||||+++|. |++ .|.- .-..+++|++
T Consensus 434 ~~L~~~~ls~~yg~---------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~ 501 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVE 501 (986)
T ss_dssp CEEEEEEEEEEETT---------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETT
T ss_pred ceeEEeeEEEEECC---------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEc
Confidence 35777789999953 46999999999999999999999999999999999 433 1210 0012478999
Q ss_pred ccC--cCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 741 QQA--WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 741 Q~p--wL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
|++ ...+.|++||+.+.....+++.+++++..++.++.. ...-.+||||||||+
T Consensus 502 q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~----------~~~~~~LSGGqkQRv 557 (986)
T 2iw3_A 502 HDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI----------AMPISALSGGWKMKL 557 (986)
T ss_dssp CCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHH----------HSBGGGCCHHHHHHH
T ss_pred ccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhh----------cCCcccCCHHHHHHH
Confidence 985 455779999998621101456677777777743321 122357999999999
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.38 E-value=4e-15 Score=171.40 Aligned_cols=109 Identities=22% Similarity=0.182 Sum_probs=79.0
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC-e-eEeCC----eEEEEeccCcCC----CccHHHHHhcCC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-R-VNTKG----SIAFVPQQAWIQ----NATLRDNIVFGK 758 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G-~-I~i~g----~Iayv~Q~pwL~----ngTIreNIlfg~ 758 (950)
+.|+||++++|+.++|+||+|||||||+++|+|.+.+++| + |.++| .++|++|++-++ ..|++||+ |+.
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQ 206 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccc
Confidence 3478999999999999999999999999999999999999 9 99876 699999998433 46999999 764
Q ss_pred CC-Ch-hHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHHH
Q psy16196 759 TH-VP-RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQV 808 (950)
Q Consensus 759 ~~-d~-~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~v 808 (950)
.. .. ...++ ..+-++.+ |.+.... ..+|||||||||....
T Consensus 207 ~~~~~~~~~~~------~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAr 248 (460)
T 2npi_A 207 SLTSGATLLHN------KQPMVKNF--GLERINE--NKDLYLECISQLGQVV 248 (460)
T ss_dssp BCBSSCCSSCC------BCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHH
T ss_pred ccccCcchHHH------HHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHH
Confidence 32 10 00000 11111111 2222222 6789999999996554
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.8e-13 Score=158.97 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=86.1
Q ss_pred eeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE-----------eCC---
Q psy16196 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN-----------TKG--- 734 (950)
Q Consensus 669 ~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~-----------i~g--- 734 (950)
|++++|.. ..+.|++++ .+++|+.++|+||+|||||||+++|.|+++|++|+|. +.|
T Consensus 82 ~~~~~Y~~--------~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~ 152 (608)
T 3j16_B 82 HVTHRYSA--------NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSEL 152 (608)
T ss_dssp TEEEECST--------TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTH
T ss_pred CeEEEECC--------CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhh
Confidence 56788864 456788888 6899999999999999999999999999999999982 333
Q ss_pred ------------eEEEEeccC----cCC---CccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCC
Q psy16196 735 ------------SIAFVPQQA----WIQ---NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 735 ------------~Iayv~Q~p----wL~---ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~ 795 (950)
...+.+|.. ... ..++++++......+.++.+++++..+|.++.+..+ .+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~ 221 (608)
T 3j16_B 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDI-----------EK 221 (608)
T ss_dssp HHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCT-----------TT
T ss_pred hhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCCh-----------HH
Confidence 112333321 111 126777776555556677888999988876655443 58
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
|||||||||
T Consensus 222 LSgGe~Qrv 230 (608)
T 3j16_B 222 LSGGELQRF 230 (608)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999999
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.35 E-value=2.8e-13 Score=159.20 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=85.5
Q ss_pred eeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee-----------EeCC---
Q psy16196 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-----------NTKG--- 734 (950)
Q Consensus 669 ~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I-----------~i~g--- 734 (950)
+.+..|.. +.+.|.++. .+++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 4 ~~~~~~~~--------~~f~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKV--------NGFKLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESST--------TSCEEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCceecCC--------CceeecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeH
Confidence 45667765 445665544 245999999999999999999999999999999998 3333
Q ss_pred ----------------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCH
Q psy16196 735 ----------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798 (950)
Q Consensus 735 ----------------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSG 798 (950)
.+.|++|.+.++.+|+++++.... +.++.+++++.+++..+.+. .-.+|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~-----------~~~~LSg 141 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNK-----------DANILSG 141 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTS-----------BGGGCCH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcC-----------ChhhCCH
Confidence 234566677888899999886433 23467888998888655432 2357999
Q ss_pred HHhhcc
Q psy16196 799 GQKQRV 804 (950)
Q Consensus 799 GQKQRI 804 (950)
||||||
T Consensus 142 Ge~Qrv 147 (538)
T 3ozx_A 142 GGLQRL 147 (538)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 64
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.33 E-value=7.2e-14 Score=149.40 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=88.6
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-CCeeEeCC---------eEEEEec-----cCcCCCccHH
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-SGRVNTKG---------SIAFVPQ-----QAWIQNATLR 751 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-~G~I~i~g---------~Iayv~Q-----~pwL~ngTIr 751 (950)
++|+|+| +++|++++|+||+|||||||+++|+|++++. +|+|.+.| .+++++| ++.-|..+|+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la 92 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 92 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHH
Confidence 5899999 9999999999999999999999999999998 99998764 2455666 4555677888
Q ss_pred HHHhcC-------CCCChhHHHHHHHHhcCCc---------------h--------------hhhCCCCCcccccCCCCC
Q psy16196 752 DNIVFG-------KTHVPRRYNKVIDACALTP---------------D--------------FEMLPAGDSTEIGEKGIN 795 (950)
Q Consensus 752 eNIlfg-------~~~d~~~y~~Vi~ac~L~~---------------D--------------i~~Lp~Gd~T~IGe~G~~ 795 (950)
.++... +|.|++..+++++++.-.. | -..++++++++|++++..
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~ 172 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 172 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEeEe
Confidence 887764 3447777777776653110 0 013567899999999999
Q ss_pred CCHHHhhcc
Q psy16196 796 LSGGQKQRV 804 (950)
Q Consensus 796 LSGGQKQRI 804 (950)
+||| ||+
T Consensus 173 ~~~G--~R~ 179 (261)
T 2eyu_A 173 KIGG--GRV 179 (261)
T ss_dssp CSSS--SSE
T ss_pred cCCC--CEE
Confidence 9999 666
No 65
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.32 E-value=1.3e-13 Score=155.06 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=93.6
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-CCeeEeC---------CeEEEEec-----cCcCCCccH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-SGRVNTK---------GSIAFVPQ-----QAWIQNATL 750 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-~G~I~i~---------g~Iayv~Q-----~pwL~ngTI 750 (950)
+++|++++ +++|++++|+||+|||||||+++|+|++++. +|+|.+. +.++||+| ++..|+++|
T Consensus 125 ~~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 125 PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp CSSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CHHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHH
Confidence 35788876 8999999999999999999999999999998 8998542 46889999 899999999
Q ss_pred HHHHhcCCCC-------ChhHHHHHHHHhcCCch----------------h-------------hhCCCCCcccccCCCC
Q psy16196 751 RDNIVFGKTH-------VPRRYNKVIDACALTPD----------------F-------------EMLPAGDSTEIGEKGI 794 (950)
Q Consensus 751 reNIlfg~~~-------d~~~y~~Vi~ac~L~~D----------------i-------------~~Lp~Gd~T~IGe~G~ 794 (950)
++|+..+-+. |++..+.+++++..... + ..++++.+++|+++++
T Consensus 203 ~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~ 282 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLL 282 (372)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEE
T ss_pred HHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeE
Confidence 9999874333 77777777877643211 1 1257789999999999
Q ss_pred CCCHHHhhcc
Q psy16196 795 NLSGGQKQRV 804 (950)
Q Consensus 795 ~LSGGQKQRI 804 (950)
.+||| ||+
T Consensus 283 ~~~~G--~R~ 290 (372)
T 2ewv_A 283 PKIGG--GRV 290 (372)
T ss_dssp ECSSS--SEE
T ss_pred ecCCC--CEE
Confidence 99999 676
No 66
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.29 E-value=5.5e-13 Score=162.21 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=42.0
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHH---------------------HHHcCCCcccCC-------eeEeCC--
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLV---------------------SALCGEMDKISG-------RVNTKG-- 734 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL---------------------~aLLGe~~~~~G-------~I~i~g-- 734 (950)
...+|+||||+|++|++++|+||+|||||||+ +.+.|...|+.| .|.+++
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777777744 444433
Q ss_pred -------eEEEEeccCcC--------------------CCccHHHHHhcCC
Q psy16196 735 -------SIAFVPQQAWI--------------------QNATLRDNIVFGK 758 (950)
Q Consensus 735 -------~Iayv~Q~pwL--------------------~ngTIreNIlfg~ 758 (950)
.++|++|.+-+ ...|++||+.+..
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~ 160 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFD 160 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhh
Confidence 35666665433 2458999998753
No 67
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.25 E-value=1.4e-13 Score=148.02 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=54.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------eEEEEeccCcCCCc-cHHHHHhcCCCCChhH-HHHH
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------SIAFVPQQAWIQNA-TLRDNIVFGKTHVPRR-YNKV 768 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----------~Iayv~Q~pwL~ng-TIreNIlfg~~~d~~~-y~~V 768 (950)
.++||||+|||||||+++|.|...|++|+|.++| .++|++|++.++.. ||.||+.||...+.+. .+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4899999999999999999999999999998765 59999999987754 9999999987543221 1222
Q ss_pred HHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 769 IDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 769 i~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.+.. ..+..+.++ ..||||||||+
T Consensus 84 ~~~~-~~~~~~~~~-----------~~LS~G~~qrv 107 (270)
T 3sop_A 84 EKYI-NEQYEKFLK-----------EEVNIARKKRI 107 (270)
T ss_dssp HHHH-HHHHHHHHH-----------HHSCTTCCSSC
T ss_pred HHHH-HHHHHhhhH-----------HhcCcccchhh
Confidence 2221 111112111 26999999998
No 68
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.21 E-value=8.6e-13 Score=140.15 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe---CCeEEEEeccCcCCCccHHHHHhcCC---
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT---KGSIAFVPQQAWIQNATLRDNIVFGK--- 758 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i---~g~Iayv~Q~pwL~ngTIreNIlfg~--- 758 (950)
+.++|+|+||++++|++++|+||+|||||||++.|.|.+ |.+.+ ...++|++|++....-|.++|+.+..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~ 86 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCC
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccCC
Confidence 457999999999999999999999999999999998866 55543 35799999998666679999986532
Q ss_pred CCC-hhH--HHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 759 THV-PRR--YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 759 ~~d-~~~--y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
.++ ++. .+++.+. ++.+.++....+ ..|||||+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~------L~~l~~~~~~~~----~~ls~g~~~r~~ 126 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHRT------LKNIVEGKTVEV----PTYDFVTHSRLP 126 (245)
T ss_dssp CTTSGGGBCHHHHHHH------HHHHHTTCCEEE----CCEETTTTEECS
T ss_pred CCCCcccccHHHHHHH------HHHHHCCCCeec----ccccccccCccC
Confidence 111 111 1222222 221223333333 479999999983
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.21 E-value=6.1e-13 Score=150.42 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=86.2
Q ss_pred CCcccceeEEeeCCe--------------------EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe----EEEEec
Q psy16196 686 PPTLQNINMRVREGT--------------------LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----IAFVPQ 741 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~--------------------lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~----Iayv~Q 741 (950)
..+|+||||++++|+ .++|+||+|||||||+++|+|..+|++|+|.++|. .+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 99999999999999999999999999999998872 389999
Q ss_pred cCcCCCccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHH--Hhhccc
Q psy16196 742 QAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG--QKQRVK 805 (950)
Q Consensus 742 ~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGG--QKQRI~ 805 (950)
++...+-|++||+-++.+ .++.++.++..++.+. +..+ . |||| ||||+.
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~ 166 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDID 166 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHH
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHH
Confidence 987678899999987754 3456777777776431 1122 2 8999 999993
No 70
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.20 E-value=7.8e-12 Score=152.10 Aligned_cols=36 Identities=36% Similarity=0.649 Sum_probs=33.1
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
..++|+||||+|++||+++|+||+|||||||+++|+
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 346899999999999999999999999999998764
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.20 E-value=1.1e-12 Score=135.11 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=46.8
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe----------CCeEEEEeccCcCCCccHHHHH-
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT----------KGSIAFVPQQAWIQNATLRDNI- 754 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i----------~g~Iayv~Q~pwL~ngTIreNI- 754 (950)
..+|+|| ++|+.++|+||+|||||||+++|.|. +|++|+|.. ...|+|++|++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4589996 89999999999999999999999999 999999853 13699999988 7888
Q ss_pred hcC
Q psy16196 755 VFG 757 (950)
Q Consensus 755 lfg 757 (950)
.++
T Consensus 81 ~~~ 83 (208)
T 3b85_A 81 PYL 83 (208)
T ss_dssp TTT
T ss_pred HHH
Confidence 454
No 72
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.15 E-value=1.2e-12 Score=141.91 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=73.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcCCCCCh----hHHHHHHHHh
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVP----RRYNKVIDAC 772 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~----~~y~~Vi~ac 772 (950)
+++.+++|+|++|||||||++.|.+.+.+.... ...+.+|+|++++++.++++|+.++.+... ....+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 367899999999999999999999998764211 124567799999999999999987642100 0000111123
Q ss_pred cCCchhhhCCCCCcc------cccCCCCCCCHHHhhcc
Q psy16196 773 ALTPDFEMLPAGDST------EIGEKGINLSGGQKQRV 804 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T------~IGe~G~~LSGGQKQRI 804 (950)
.+.++++.+++|++| .+++.+.++||||+||+
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~ 143 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC 143 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEEC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCcccccc
Confidence 455678889999655 46778899999999997
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=3.1e-11 Score=148.60 Aligned_cols=31 Identities=42% Similarity=0.698 Sum_probs=29.4
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
...|+||||+|++|++++|+|++|||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 3579999999999999999999999999997
No 74
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.12 E-value=3.1e-13 Score=152.38 Aligned_cols=121 Identities=25% Similarity=0.235 Sum_probs=78.8
Q ss_pred cccceeEEeeC--CeEEEEEcCCCCChhHHHHHHcCCCcccC----CeeEeC----C-----------eEEEEeccCcCC
Q psy16196 688 TLQNINMRVRE--GTLVAIVGSVGAGKSSLVSALCGEMDKIS----GRVNTK----G-----------SIAFVPQQAWIQ 746 (950)
Q Consensus 688 vL~~Inl~i~~--G~lvaIVG~vGSGKSTLL~aLLGe~~~~~----G~I~i~----g-----------~Iayv~Q~pwL~ 746 (950)
+.+.|+++|++ |+.++|+||+|||||||+++|.|.+++.+ |++.++ | +|+|++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 988762 2 388999999999
Q ss_pred CccHHHHHhcCCCCC-hhHHHHHHHHhcCCchhhhCCCC--Ccc--------cccCCCCCCCHHHhhcccHHH
Q psy16196 747 NATLRDNIVFGKTHV-PRRYNKVIDACALTPDFEMLPAG--DST--------EIGEKGINLSGGQKQRVKWQV 808 (950)
Q Consensus 747 ngTIreNIlfg~~~d-~~~y~~Vi~ac~L~~Di~~Lp~G--d~T--------~IGe~G~~LSGGQKQRI~~~v 808 (950)
++|++|||.++.... ................+..++.+ .+. ...++|.++||||+||+...-
T Consensus 237 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~ 309 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQ 309 (365)
T ss_dssp HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHH
T ss_pred HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHH
Confidence 999999999875421 11111111111223334444322 222 223788999999999996543
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.11 E-value=3.5e-13 Score=154.32 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=74.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC--------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------- 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------- 734 (950)
+.++++|+++.|.. +..+|+++ |+|++|+.++|+||+|||||||+++|.|..+++.|.|.+.|
T Consensus 130 ~~l~~~~v~~~~~t--------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSBCCC--------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHH
T ss_pred CceEEeccceecCC--------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHH
Confidence 45778889888863 35699999 99999999999999999999999999999999999998766
Q ss_pred -------------eEEEEecc--CcCCCccHHHHHhcC
Q psy16196 735 -------------SIAFVPQQ--AWIQNATLRDNIVFG 757 (950)
Q Consensus 735 -------------~Iayv~Q~--pwL~ngTIreNIlfg 757 (950)
.|+||+|+ |...+-|+.+|+.+.
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 37999994 556678999999875
No 76
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.09 E-value=1.3e-11 Score=121.27 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe-E-------EEEeccCcCCCccHHHHHh-c
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-I-------AFVPQQAWIQNATLRDNIV-F 756 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~-I-------ayv~Q~pwL~ngTIreNIl-f 756 (950)
..+++++||+|++|+.++++||+|||||||+++|.|.+ |.+|+|.++|. + .|++|++-+++-|++||+. +
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~~ 98 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFM 98 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHHS
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccccCCcHHHHHHc
Confidence 36899999999999999999999999999999999999 99999998761 1 2789998888889999995 4
Q ss_pred C
Q psy16196 757 G 757 (950)
Q Consensus 757 g 757 (950)
|
T Consensus 99 g 99 (158)
T 1htw_A 99 G 99 (158)
T ss_dssp T
T ss_pred C
Confidence 5
No 77
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.08 E-value=8.5e-11 Score=143.52 Aligned_cols=54 Identities=30% Similarity=0.394 Sum_probs=40.0
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHH-Hc-------CCCcccCCee
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSA-LC-------GEMDKISGRV 730 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~a-LL-------Ge~~~~~G~I 730 (950)
..++++|+++ ..|+||||+|++|++++|+|++|||||||++. |. |+..+..|.+
T Consensus 501 ~~L~v~~l~~--------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~ 562 (842)
T 2vf7_A 501 GWLELNGVTR--------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPED 562 (842)
T ss_dssp CEEEEEEEEE--------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------
T ss_pred ceEEEEeeee--------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 4689999875 15999999999999999999999999999997 54 4444545544
No 78
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.08 E-value=2.7e-12 Score=132.70 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=72.8
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhc----CCC--CChhHHHHHH
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVF----GKT--HVPRRYNKVI 769 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlf----g~~--~d~~~y~~Vi 769 (950)
.++|++++|+||+|||||||+++|.|.+++. | ..+++++|+.+.++.+.++|+.. +.+ ++.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEG----- 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHH-----
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHH-----
Confidence 4789999999999999999999999999875 4 35899999999999998888631 111 22222
Q ss_pred HHhcCCchhhhCCCC--CcccccCCCCCCCHHHhhccc
Q psy16196 770 DACALTPDFEMLPAG--DSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 770 ~ac~L~~Di~~Lp~G--d~T~IGe~G~~LSGGQKQRI~ 805 (950)
+.+.+..|+.| .++.++++|..+||||+|||.
T Consensus 88 ----~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~ 121 (208)
T 3c8u_A 88 ----FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVG 121 (208)
T ss_dssp ----HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEEC
T ss_pred ----HHHHHHHHhcCCceecccCCccccCCCCCceEEc
Confidence 22334444545 456789999999999999984
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.02 E-value=3.6e-11 Score=120.16 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=30.7
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
||||++++|++++|+||+|||||||++++.+..+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~ 34 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE 34 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe
Confidence 6899999999999999999999999999775443
No 80
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.01 E-value=4.2e-11 Score=132.56 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=75.4
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-ccCCeeEeC-C---------eEEEEeccCcCCCc-cHHHHHh
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTK-G---------SIAFVPQQAWIQNA-TLRDNIV 755 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-~~~G~I~i~-g---------~Iayv~Q~pwL~ng-TIreNIl 755 (950)
-++++++. .+|+.++|+||+|+|||||+++|+|+.. +..|+|.+. | .++|++|+++++.. |++++-+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 47788875 4899999999999999999999999999 999999875 4 68999999988754 8999644
Q ss_pred cCCCCChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc-------cHHHHHHHHH
Q psy16196 756 FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV-------KWQVYLHYLK 814 (950)
Q Consensus 756 fg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI-------~~~vy~~Y~~ 814 (950)
.+ .+++. +.+. ..+.++.+ |..-.-+..-.+|| ||+||+ +..-|..|.+
T Consensus 284 ~~--l~~~e---~~~~--~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R~~~y~~ 339 (358)
T 2rcn_A 284 WH--LEPEQ---ITQG--FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAIAETRFENYHR 339 (358)
T ss_dssp CC--CCHHH---HHHT--SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHHHHHHHH
T ss_pred cC--CCHHH---HHHH--HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCCCHHHHHHHHH
Confidence 32 22221 1111 11112221 22222344557899 999999 3345555554
No 81
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.99 E-value=1.8e-10 Score=119.07 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=64.8
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCc---cHHHHHhc--CCC--CChhHHHHH
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA---TLRDNIVF--GKT--HVPRRYNKV 768 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ng---TIreNIlf--g~~--~d~~~y~~V 768 (950)
.++|++++|+||+|||||||++.|.|.+.+ +++|++|++.+++. |+++|+.+ +.+ ++.++..++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 579999999999999999999999998875 68999999998743 67776654 332 455667777
Q ss_pred HHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 769 IDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 769 i~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
++..++.+.+.. | +.++..|+++. |+||+
T Consensus 74 l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~ 102 (211)
T 3asz_A 74 AQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPV 102 (211)
T ss_dssp HHHHHTTCCEEE-C-CEETTTTEECS-----SCEEE
T ss_pred HHHHHcCCCcCC-C-cccCcccCCCC-----CeEEe
Confidence 777766655543 3 33333333322 45666
No 82
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.97 E-value=4.9e-10 Score=137.44 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=38.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
..++++|++. ..|+||||+|++|++++|+|++|||||||+++|+
T Consensus 646 ~~L~v~~l~~--------------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE--------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS--------------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc--------------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3578888741 3699999999999999999999999999999864
No 83
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.97 E-value=1.9e-10 Score=131.93 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=55.9
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc--------------------------------------ccCCe
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--------------------------------------KISGR 729 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~--------------------------------------~~~G~ 729 (950)
.++|++|++++| +++|+||+|||||||+++|.+... +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999844432 34677
Q ss_pred eEeCCe--------------EEEEeccCcCCCccHHHHHhc
Q psy16196 730 VNTKGS--------------IAFVPQQAWIQNATLRDNIVF 756 (950)
Q Consensus 730 I~i~g~--------------Iayv~Q~pwL~ngTIreNIlf 756 (950)
+.++|. +++++|++-++-.+-.++..|
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 888872 899999998887777665544
No 84
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.96 E-value=2.8e-10 Score=138.98 Aligned_cols=44 Identities=32% Similarity=0.498 Sum_probs=38.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
..++++|++. ..|+||||+|++|++++|+|++|||||||++.|+
T Consensus 628 ~~L~v~~l~~--------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE--------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS--------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc--------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3578887741 3699999999999999999999999999999865
No 85
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.92 E-value=3.1e-10 Score=125.45 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=68.9
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC-----------------------------------------------
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEM----------------------------------------------- 723 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~----------------------------------------------- 723 (950)
++++++.+| +++|+||+|||||||+.+|...+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578888999 99999999999999999997221
Q ss_pred ---cccCCeeEeCC-------------eEEEEeccCcCC-CccHHHHHhcCCC-------------CChhHHHHHHHHhc
Q psy16196 724 ---DKISGRVNTKG-------------SIAFVPQQAWIQ-NATLRDNIVFGKT-------------HVPRRYNKVIDACA 773 (950)
Q Consensus 724 ---~~~~G~I~i~g-------------~Iayv~Q~pwL~-ngTIreNIlfg~~-------------~d~~~y~~Vi~ac~ 773 (950)
.+.+|.+.++| .+++++|+..+. .|+|.+|+..... .....|+++.+.+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22235666776 356667765544 8899998865321 00124555655421
Q ss_pred -------------C--C-chhhhCCCCCcccccC------CCCCCCHHHhhcccHH
Q psy16196 774 -------------L--T-PDFEMLPAGDSTEIGE------KGINLSGGQKQRVKWQ 807 (950)
Q Consensus 774 -------------L--~-~Di~~Lp~Gd~T~IGe------~G~~LSGGQKQRI~~~ 807 (950)
+ . +..+.++.|.++.+++ +...||||||||+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia 231 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLA 231 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHH
Confidence 1 1 1123466676665442 3568999999998443
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.86 E-value=2.4e-10 Score=126.32 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=46.4
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCe
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~ 735 (950)
+++++|+.+++|+.++|+||+|||||||+++|+|+++|.+|.|.++|.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 799999999999999999999999999999999999999999999874
No 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.86 E-value=1.1e-10 Score=117.19 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=53.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCccc-CCeeE-------eCCeEEEEeccCcCCCccHHHHHhcCCCCChhHHHHHHHHh
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKI-SGRVN-------TKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC 772 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~-~G~I~-------i~g~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~Vi~ac 772 (950)
.++|+||+|||||||+++|+|++... .|... ...+++|++|++ +.++|++ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~--------------- 60 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-S--------------- 60 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-E---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-H---------------
Confidence 58999999999999999999998532 33211 123689999986 3333331 1
Q ss_pred cCCchhhhCCCCCcccccCCCCCCCHHHhhcccHH
Q psy16196 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQ 807 (950)
Q Consensus 773 ~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~ 807 (950)
.+. ++ .+..++.++.+||||||||+...
T Consensus 61 ~~~-----~~--~~~~~~~~~~~lSgG~~qr~~la 88 (178)
T 1ye8_A 61 SKF-----FT--SKKLVGSYGVNVQYFEELAIPIL 88 (178)
T ss_dssp ETT-----CC--CSSEETTEEECHHHHHHHHHHHH
T ss_pred hhc-----CC--ccccccccccCcCHHHHHHHHHH
Confidence 000 01 12467888999999999998654
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.80 E-value=6.9e-10 Score=123.23 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=54.8
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
+.++.++++..|.. +..+|+++ |+|.+|+.++|+||+|||||||++.|.|..+++.|.|.+.|
T Consensus 44 ~~i~~~~l~~~~~t--------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp CSTTCCCCCSEECC--------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCeeecccceecCC--------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 35777888888863 45699999 99999999999999999999999999999999988776654
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.80 E-value=2.1e-11 Score=143.96 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCCcccceeE-EeeCCeEEEEEcCCCCChhHHHHH--HcCCCcccCCeeEeCC------------eEEEEeccCc
Q psy16196 685 SPPTLQNINM-RVREGTLVAIVGSVGAGKSSLVSA--LCGEMDKISGRVNTKG------------SIAFVPQQAW 744 (950)
Q Consensus 685 ~~~vL~~Inl-~i~~G~lvaIVG~vGSGKSTLL~a--LLGe~~~~~G~I~i~g------------~Iayv~Q~pw 744 (950)
+.++|+||++ .|++|+.++|+||+|||||||++. +.|..+|.+|.|.++| +++|++|++.
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 4679999999 999999999999999999999999 6799999999999976 4788888765
No 90
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.77 E-value=1.8e-09 Score=125.99 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=57.3
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC----------eEEEEeccCcCCC--ccHHHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------SIAFVPQQAWIQN--ATLRDN 753 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g----------~Iayv~Q~pwL~n--gTIreN 753 (950)
+.+++++++.+++|+.++|+||+|||||||+++|+|++++.+|.|.+.| .++++.|++. .. .|++++
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~-~~~~~~~~~~ 325 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM-GEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS-SSCCBCHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc-ccCCcCHHHH
Confidence 3578999999999999999999999999999999999999999999865 2466666654 22 377777
Q ss_pred Hh
Q psy16196 754 IV 755 (950)
Q Consensus 754 Il 755 (950)
+.
T Consensus 326 l~ 327 (511)
T 2oap_1 326 LR 327 (511)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 91
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.77 E-value=4.2e-10 Score=127.79 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=40.2
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~ 733 (950)
.+|+++ + .++|++++|+||+|||||||+++|+|++++.+|+|.+.
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 367777 5 38999999999999999999999999999999998764
No 92
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=1.3e-09 Score=122.91 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=60.0
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeE--EEEEcCCCCChhHHHHHHcCCCcccCCeeEe-------CCe
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTL--VAIVGSVGAGKSSLVSALCGEMDKISGRVNT-------KGS 735 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~l--vaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i-------~g~ 735 (950)
+++++ +++|+. .+ |+|+||++++|+. ++||||+|||||||+++|+|..- .|.-.. ...
T Consensus 17 l~~~~-~~~y~~---------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFDS---------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-----------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEE
T ss_pred EEEee-EEEECC---------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEee
Confidence 44555 666643 35 9999999999999 99999999999999999999841 221110 126
Q ss_pred EEEEeccCcCC-CccHHHHHhcCCCCC
Q psy16196 736 IAFVPQQAWIQ-NATLRDNIVFGKTHV 761 (950)
Q Consensus 736 Iayv~Q~pwL~-ngTIreNIlfg~~~d 761 (950)
++|++|++-++ +-|+.||+.||...+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~ 110 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQIN 110 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CC
T ss_pred EEEEeecCccccccchhhhhhhhhccc
Confidence 99999998876 679999999997654
No 93
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.74 E-value=1.9e-09 Score=117.82 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=50.1
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe---CC-------------eEEEEeccCcCC------CccHH
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT---KG-------------SIAFVPQQAWIQ------NATLR 751 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i---~g-------------~Iayv~Q~pwL~------ngTIr 751 (950)
+++.+|++++++||+|||||||+++|+ ..++.+|+|.+ +| .++|++|+|-+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 345679999999999999999999999 99999999998 54 379999999763 5688
Q ss_pred HHH--hcC
Q psy16196 752 DNI--VFG 757 (950)
Q Consensus 752 eNI--lfg 757 (950)
||+ .|+
T Consensus 238 e~l~~~f~ 245 (302)
T 2yv5_A 238 REVRNYFR 245 (302)
T ss_dssp GGGGGGCG
T ss_pred HHHHHHHH
Confidence 998 554
No 94
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.72 E-value=1.9e-09 Score=117.53 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=59.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------------eEEEEeccCc-C-CC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------------SIAFVPQQAW-I-QN 747 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------------~Iayv~Q~pw-L-~n 747 (950)
+.++||++++|+.+++|||+||||||+++.|.|.+.+.+|+|.+.| .|+|++|++- + ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 3468899999999999999999999999999999999999998864 3899999986 4 45
Q ss_pred ccHHHHHhcC
Q psy16196 748 ATLRDNIVFG 757 (950)
Q Consensus 748 gTIreNIlfg 757 (950)
.|++|||.++
T Consensus 170 ~~v~e~l~~~ 179 (302)
T 3b9q_A 170 TVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6999999875
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.70 E-value=1.8e-09 Score=109.48 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=48.1
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------eEEEEeccCcCCCccHHHHHhc
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIAFVPQQAWIQNATLRDNIVF 756 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------~Iayv~Q~pwL~ngTIreNIlf 756 (950)
.+++|++++|+||+|||||||++.|.|. +..|.|.++| .++|++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 6789888875 2467777654 46788888865
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.69 E-value=1.6e-09 Score=109.75 Aligned_cols=82 Identities=22% Similarity=0.337 Sum_probs=59.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------eEEEEeccCcCCCccHHHHHhcCCCCChhHHHH
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNK 767 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------~Iayv~Q~pwL~ngTIreNIlfg~~~d~~~y~~ 767 (950)
|+.++|+||+|||||||++.|+|+++ ++| |.++| +++|++|+. +++ ++|+.-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~----------- 63 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSR----------- 63 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEE-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhc-----------
Confidence 78999999999999999999999999 999 87755 578998885 443 222210
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhccc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~ 805 (950)
+. ...-+......+|+.|..+|||||+++.
T Consensus 64 ------~~--~~~~~~~~~~~v~~~~~~ls~~er~~~~ 93 (189)
T 2i3b_A 64 ------VG--LEPPPGKRECRVGQYVVDLTSFEQLALP 93 (189)
T ss_dssp ------CC--CCCCSSSCCEESSSSEECHHHHHTTTTT
T ss_pred ------cc--ccCCccccccccceEEEcchHHHHHHHH
Confidence 00 0000011234899999999999998873
No 97
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.66 E-value=7.3e-10 Score=121.03 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=48.2
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC-CcccCCeeEeC----------CeEEEEeccCcC-CCccHHHH
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE-MDKISGRVNTK----------GSIAFVPQQAWI-QNATLRDN 753 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe-~~~~~G~I~i~----------g~Iayv~Q~pwL-~ngTIreN 753 (950)
..+++|++|+| +|+||+|+|||||++.|.|. ..+.+| +.++ ..++|++|++-+ .+-||.||
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt 83 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDT 83 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhh
Confidence 56899999998 99999999999999999997 888888 5432 247899997654 35688888
Q ss_pred HhcCCCCC-hhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 754 IVFGKTHV-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 754 Ilfg~~~d-~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.-+|...+ +++++.+++. +.+.. ...-.++|||||||+
T Consensus 84 ~g~~~~~~~~e~~~~l~~~--l~~~~-----------~~~~~~~sgg~rqrv 122 (301)
T 2qnr_A 84 PGYGDAINCRDCFKTIISY--IDEQF-----------ERYLHDESGLNRRHI 122 (301)
T ss_dssp C-----------CTTHHHH--HHHHH-----------HHHHHHHTSSCCTTC
T ss_pred hhhhhhcCcHHHHHHHHHH--HHHHH-----------HHHHHHhCHHhhhhh
Confidence 87765432 1223333322 11111 112246899999998
No 98
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.65 E-value=4.7e-09 Score=116.56 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=60.3
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------------eEEEEeccCc--CCCc
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------------SIAFVPQQAW--IQNA 748 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------------~Iayv~Q~pw--L~ng 748 (950)
.++||++++|+.++||||+||||||+++.|.|.+.+.+|+|.+.| .|+|++|++- ....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 357899999999999999999999999999999999999998754 3899999986 4567
Q ss_pred cHHHHHhcC
Q psy16196 749 TLRDNIVFG 757 (950)
Q Consensus 749 TIreNIlfg 757 (950)
|++|||.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999999875
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.60 E-value=7.7e-09 Score=118.16 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=60.4
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------------eEEEEeccCcC-CCc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------------SIAFVPQQAWI-QNA 748 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------------~Iayv~Q~pwL-~ng 748 (950)
-+++||++++|++++|||++|||||||++.|.|.+.+.+|+|.+.| .|+|++|++-+ ...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 3578999999999999999999999999999999999999998852 37899998764 467
Q ss_pred cHHHHHhcC
Q psy16196 749 TLRDNIVFG 757 (950)
Q Consensus 749 TIreNIlfg 757 (950)
|+++||.++
T Consensus 363 tV~e~l~~a 371 (503)
T 2yhs_A 363 VIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999875
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.59 E-value=4.5e-09 Score=108.28 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=42.7
Q ss_pred CCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe---------CCeEEEEeccCcCCC-ccHHHH
Q psy16196 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT---------KGSIAFVPQQAWIQN-ATLRDN 753 (950)
Q Consensus 684 ~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i---------~g~Iayv~Q~pwL~n-gTIreN 753 (950)
+..++++| .+|++|++++|+||+|||||||+++|.|.++...+.+.+ ...++|++|++.+|. -|+++|
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCC
Confidence 35689999 799999999999999999999999999998522221111 125899999987654 355566
Q ss_pred Hh
Q psy16196 754 IV 755 (950)
Q Consensus 754 Il 755 (950)
+.
T Consensus 85 l~ 86 (207)
T 1znw_A 85 LL 86 (207)
T ss_dssp EE
T ss_pred ce
Confidence 53
No 101
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.58 E-value=1.5e-09 Score=111.16 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=57.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc-------------ccCCeeEeCCe-EEE---------EeccCcCCCccHHHH
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD-------------KISGRVNTKGS-IAF---------VPQQAWIQNATLRDN 753 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~-------------~~~G~I~i~g~-Iay---------v~Q~pwL~ngTIreN 753 (950)
++|++++|+||+|||||||+++|+|+++ |..|+ ++|. +-+ ++|+++++++|+++|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5899999999999999999999999886 66776 3441 212 257889999999999
Q ss_pred HhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccc
Q psy16196 754 IVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789 (950)
Q Consensus 754 Ilfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~I 789 (950)
+ +|.+ .+..+++++.... ..++..|+|.++..
T Consensus 80 ~-~g~~--~~~i~~~~~~~~~-~~~~~~~~g~~~~~ 111 (198)
T 1lvg_A 80 L-YGTS--KEAVRAVQAMNRI-CVLDVDLQGVRSIK 111 (198)
T ss_dssp E-EEEE--HHHHHHHHHTTCE-EEEECCHHHHHHHT
T ss_pred c-CCCC--HHHHHHHHHcCCc-EEEECCHHHHHHHH
Confidence 8 7753 3445555554211 11123456666654
No 102
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=1.6e-08 Score=110.40 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=58.1
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe---CC-------------eEEEEeccCc-------------
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT---KG-------------SIAFVPQQAW------------- 744 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i---~g-------------~Iayv~Q~pw------------- 744 (950)
|++.+|+.++++||+|||||||+++|+|...|.+|+|.+ +| .++|+.|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999987 44 3799999985
Q ss_pred ----CCCccHHHHHhcCCC----CChhHHHHHHHHhcCC
Q psy16196 745 ----IQNATLRDNIVFGKT----HVPRRYNKVIDACALT 775 (950)
Q Consensus 745 ----L~ngTIreNIlfg~~----~d~~~y~~Vi~ac~L~ 775 (950)
+..-|+ +|+.|+.- ....+-+++++..+|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIA 281 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSC
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCC
Confidence 335577 89988521 1234567777777775
No 103
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.52 E-value=2.2e-09 Score=117.67 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=65.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEe-------------------eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRV-------------------REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i-------------------~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+.|+++|+++.|. +++++|++.+ ++|++++|+||+|||||||++.|.|.+
T Consensus 36 ~~i~~~~v~~~y~-----------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp TTCCHHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccchHhHHHHHH-----------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588899998884 4899999988 999999999999999999999999998
Q ss_pred c--ccCCeeEe---CC---------eEEEEeccCcC-CCccHHHHHhc
Q psy16196 724 D--KISGRVNT---KG---------SIAFVPQQAWI-QNATLRDNIVF 756 (950)
Q Consensus 724 ~--~~~G~I~i---~g---------~Iayv~Q~pwL-~ngTIreNIlf 756 (950)
. |++|+|.+ +| .++|+ |+.-+ .+-|+.+|+.+
T Consensus 105 ~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 105 SRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp TTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred hhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 8 89999988 65 24455 44332 23366666643
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.49 E-value=6.3e-09 Score=124.45 Aligned_cols=83 Identities=22% Similarity=0.299 Sum_probs=49.9
Q ss_pred cEEEEeeEEEecCCCCCCCCCCCCcccce----------eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-cCCeeEe
Q psy16196 664 PLVIENGTFTWERNTEGEGAESPPTLQNI----------NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNT 732 (950)
Q Consensus 664 ~I~~~~~sf~w~~~~~~~~~~~~~vL~~I----------nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-~~G~I~i 732 (950)
.+.++|+++.|+. ...++|+.+ ++++|. ++||||+|||||||+++|.|...| .+|.|.+
T Consensus 10 ~i~~~~l~~~~~~-------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEE-------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTR 79 (608)
T ss_dssp ----------CHH-------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCC
T ss_pred hhhhhhhhHHHHH-------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEE
Confidence 5788999999864 123455544 377775 999999999999999999999988 7999887
Q ss_pred CC----------------eEEEEeccCcCC-CccHHHHHhc
Q psy16196 733 KG----------------SIAFVPQQAWIQ-NATLRDNIVF 756 (950)
Q Consensus 733 ~g----------------~Iayv~Q~pwL~-ngTIreNIlf 756 (950)
+| .|+|++|++.++ ..||+|||.+
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 65 579999998775 4599999965
No 105
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.46 E-value=4.3e-08 Score=112.57 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=44.9
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
.+|+|+||+|++ ++++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 469999999999 99999999999999999999999999999999876
No 106
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.46 E-value=6.5e-09 Score=107.85 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=50.5
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc--cCCeeEeCC---------eEEEEeccCcCCCc-cH----HHHHhcC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDK--ISGRVNTKG---------SIAFVPQQAWIQNA-TL----RDNIVFG 757 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~--~~G~I~i~g---------~Iayv~Q~pwL~ng-TI----reNIlfg 757 (950)
-..++|++++|+||+|||||||+++|+|.++| ..|+|.+.+ .++|++|++-.|.. |+ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 35689999999999999999999999999985 788887653 48999999887765 33 5777653
No 107
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.44 E-value=5.3e-08 Score=105.72 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=42.1
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe---CC------------eEEEEeccCcCCC-----ccHHHH
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT---KG------------SIAFVPQQAWIQN-----ATLRDN 753 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i---~g------------~Iayv~Q~pwL~n-----gTIreN 753 (950)
+++.+|+.++|+||+|+|||||+++|+|+..+..|+|.+ +| .++|+.|+|-+.. -|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567799999999999999999999999999999999987 44 1699999997764 578 99
Q ss_pred Hh
Q psy16196 754 IV 755 (950)
Q Consensus 754 Il 755 (950)
|.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 94
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.43 E-value=2.6e-08 Score=103.98 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=53.9
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-------cCCeeEeCC-------eEEEEeccCcCCCccHHHHHhcCCCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDK-------ISGRVNTKG-------SIAFVPQQAWIQNATLRDNIVFGKTH 760 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-------~~G~I~i~g-------~Iayv~Q~pwL~ngTIreNIlfg~~~ 760 (950)
-+++|++++|+||+|||||||++.|+|.+.+ ..|.+.+++ +++++.|+.-++..|+.||+.+....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 6899999999999999999999999996555 233555554 35677777777777999999988776
Q ss_pred Ch
Q psy16196 761 VP 762 (950)
Q Consensus 761 d~ 762 (950)
+.
T Consensus 101 ~~ 102 (231)
T 4a74_A 101 NS 102 (231)
T ss_dssp SH
T ss_pred Ch
Confidence 54
No 109
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.43 E-value=1.4e-08 Score=112.67 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=55.3
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-----------------eEEEEeccCcCCC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------------SIAFVPQQAWIQN 747 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-----------------~Iayv~Q~pwL~n 747 (950)
.+|+++|+++++|+.++|+||+|||||||+++|.|.+.+.+|+|.+.| +++|++|++.+|.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 589999999999999999999999999999999999999999987643 4789999988874
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.35 E-value=9.8e-08 Score=103.94 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------------eEEEEeccCcCCC-ccHHHHHhcC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------------SIAFVPQQAWIQN-ATLRDNIVFG 757 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------------~Iayv~Q~pwL~n-gTIreNIlfg 757 (950)
+|+.++|+||+|||||||++.|.|.+.+.+|+|.+.| .|+|++|++-++. .|++|||.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998754 3789999876543 4788888653
No 111
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.33 E-value=6.7e-09 Score=114.40 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC--------cccCCeeEeCCe----------------------------EEEE---
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM--------DKISGRVNTKGS----------------------------IAFV--- 739 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~--------~~~~G~I~i~g~----------------------------Iayv--- 739 (950)
=++++|+|++|||||||++.|+|.. .++.|+|.++|. ++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999997 788999988651 4455
Q ss_pred eccCc-CCCccHHHHHhcCCC
Q psy16196 740 PQQAW-IQNATLRDNIVFGKT 759 (950)
Q Consensus 740 ~Q~pw-L~ngTIreNIlfg~~ 759 (950)
+|++- .++.++.||+.++.|
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p 104 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADP 104 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCH
T ss_pred HhcCCCCCCEEEEeCCCCCCH
Confidence 57664 468889999888764
No 112
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.32 E-value=1.3e-07 Score=94.91 Aligned_cols=110 Identities=18% Similarity=0.308 Sum_probs=71.6
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeE---------e----------CCeEEEEeccCc------
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN---------T----------KGSIAFVPQQAW------ 744 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~---------i----------~g~Iayv~Q~pw------ 744 (950)
+++++++.+| +++|+||+|||||||+.+|.+.+.+..|... - ...|.++.|+|-
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 9999999999999999999887766555321 1 125888888752
Q ss_pred ----CCCccHHHH----H-hcCCCCChhHHHHHHHHhcCCch-hhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 745 ----IQNATLRDN----I-VFGKTHVPRRYNKVIDACALTPD-FEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 745 ----L~ngTIreN----I-lfg~~~d~~~y~~Vi~ac~L~~D-i~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
....++..+ + +-|.+...+.+.+.++...+..| +..+++|+.+.+- .+|+++|+|+
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~l~----~~~~~~r~~~ 162 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFI----KMSPLERRLL 162 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTTEECTTCTTHHH----HSCHHHHHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCEEEEcccHHHHH----hCCHHHHHHH
Confidence 111112111 0 11233445677788888777654 5566666665542 3577777765
No 113
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.32 E-value=9.7e-08 Score=99.97 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=22.9
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHc-CCC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC-GEM 723 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL-Ge~ 723 (950)
...+++||++++|++++|+||+|||||||++.|. |.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.31 E-value=4.7e-08 Score=108.84 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=67.0
Q ss_pred Ccccce-eEEeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccC----Ce-eEeCC-------eEEEEeccCcCCCccHH
Q psy16196 687 PTLQNI-NMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKIS----GR-VNTKG-------SIAFVPQQAWIQNATLR 751 (950)
Q Consensus 687 ~vL~~I-nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~----G~-I~i~g-------~Iayv~Q~pwL~ngTIr 751 (950)
+.|+++ ++.+++|++++|+||+|||||||++.+++.. +|.+ |+ |++++ +++|++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 456665 6899999999999999999999999999998 6666 57 77765 47788899888888999
Q ss_pred HHHhcCCCCChhHHHHHH
Q psy16196 752 DNIVFGKTHVPRRYNKVI 769 (950)
Q Consensus 752 eNIlfg~~~d~~~y~~Vi 769 (950)
|||.+...++.+...+.+
T Consensus 198 ~ni~~~~~~~~~~~~~~l 215 (349)
T 1pzn_A 198 KHIYVARAFNSNHQMLLV 215 (349)
T ss_dssp GGEEEEECCSHHHHHHHH
T ss_pred hCEEEEecCChHHHHHHH
Confidence 999998776644333333
No 115
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.28 E-value=2.2e-07 Score=104.20 Aligned_cols=31 Identities=39% Similarity=0.727 Sum_probs=28.7
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
++++++++++| +++|+||+|||||||+.+|.
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 67889999999 89999999999999999986
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.27 E-value=4.8e-07 Score=100.63 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=67.4
Q ss_pred EeeEEEecCCCCCCCCCCCCcccceeE-------EeeCCeEEEEEcCCCCChhHHHHHHcCCCccc-CCeeEeC------
Q psy16196 668 ENGTFTWERNTEGEGAESPPTLQNINM-------RVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-SGRVNTK------ 733 (950)
Q Consensus 668 ~~~sf~w~~~~~~~~~~~~~vL~~Inl-------~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~-~G~I~i~------ 733 (950)
.++++.+.+ ...+.|+++.+ .+++|++++|+||+|||||||+++|+|++++. +|.|...
T Consensus 92 ~~~~iR~~~-------~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~ 164 (356)
T 3jvv_A 92 AGAVFRTIP-------SKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF 164 (356)
T ss_dssp EEEEEEEEC-------CSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS
T ss_pred cEEEEEECC-------CCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh
Confidence 356666654 24456666665 77899999999999999999999999999998 5665431
Q ss_pred ---CeEEEEeccCcCC-CccHHHH-----------HhcCCCCChhHHHHHHHHh
Q psy16196 734 ---GSIAFVPQQAWIQ-NATLRDN-----------IVFGKTHVPRRYNKVIDAC 772 (950)
Q Consensus 734 ---g~Iayv~Q~pwL~-ngTIreN-----------Ilfg~~~d~~~y~~Vi~ac 772 (950)
...++++|.+.-. ..|..+- |++|+|.|.+..+.+++++
T Consensus 165 ~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~ 218 (356)
T 3jvv_A 165 VHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAA 218 (356)
T ss_dssp CCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH
T ss_pred hhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH
Confidence 2456777765432 2344433 3356777777766666664
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.25 E-value=1.3e-07 Score=107.23 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=52.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC--eeEeC-------
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--RVNTK------- 733 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G--~I~i~------- 733 (950)
+.|.++|+++.|.. .++++|++|+| +|+|++|||||||++.|.|...+..| .+.++
T Consensus 10 ~~l~~~~l~~~y~~---------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR---------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT---------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEE
T ss_pred CcEEEEecceeECC---------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceee
Confidence 35889999998853 57999999998 99999999999999999999875443 22111
Q ss_pred CeEEEEeccCcCC-CccHHHHHhcCCCC
Q psy16196 734 GSIAFVPQQAWIQ-NATLRDNIVFGKTH 760 (950)
Q Consensus 734 g~Iayv~Q~pwL~-ngTIreNIlfg~~~ 760 (950)
..++|++|++-++ +-||.||+-+|...
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~ 102 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAV 102 (418)
T ss_dssp EEEECC------CEEEEEEECC------
T ss_pred eeEEEEEecCCcccceeeeechhhhhhc
Confidence 2489999987765 67999999988653
No 118
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.25 E-value=8.3e-09 Score=111.07 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=39.8
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
+.+++++++++++| ++++||+|||||||+++|.|+..+ |.+.++|
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g 77 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKG 77 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEET
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEc
Confidence 35799999999999 999999999999999999999876 5677665
No 119
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.24 E-value=4.5e-08 Score=108.62 Aligned_cols=69 Identities=17% Similarity=0.391 Sum_probs=58.0
Q ss_pred CCcccceeEEeeCC-------eEEEEEcCCCCChhHHHHHHcCCC----cccCCeeEe-------------CCeEEEEec
Q psy16196 686 PPTLQNINMRVREG-------TLVAIVGSVGAGKSSLVSALCGEM----DKISGRVNT-------------KGSIAFVPQ 741 (950)
Q Consensus 686 ~~vL~~Inl~i~~G-------~lvaIVG~vGSGKSTLL~aLLGe~----~~~~G~I~i-------------~g~Iayv~Q 741 (950)
+.+++++++.+++| +.++++||+|+|||||+++|.|++ .+.+|.+.. .+.|.|++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35899999999877 889999999999999999999998 777887653 246999999
Q ss_pred cCcCCCccHHHHHh
Q psy16196 742 QAWIQNATLRDNIV 755 (950)
Q Consensus 742 ~pwL~ngTIreNIl 755 (950)
..-+.. ++.|++.
T Consensus 111 ~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 111 IHRLNK-AVEELLY 123 (334)
T ss_dssp GGGCCH-HHHHHHH
T ss_pred hhhcCH-HHHHHHH
Confidence 887765 7888774
No 120
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.23 E-value=7.5e-08 Score=102.31 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=51.4
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHc---CCCcccCCeeE--------eCC--------------eEEEEec-
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALC---GEMDKISGRVN--------TKG--------------SIAFVPQ- 741 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL---Ge~~~~~G~I~--------i~g--------------~Iayv~Q- 741 (950)
++++.+ ++|+.++|+||+||||||++++|. |...+++|.+. .+| .++++.|
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999987 433 4778884
Q ss_pred -----cCcCCCccHHHHHh
Q psy16196 742 -----QAWIQNATLRDNIV 755 (950)
Q Consensus 742 -----~pwL~ngTIreNIl 755 (950)
..++++.++.+||.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp ETTEEEEEETTEECTTGGG
T ss_pred CCCCceEEECCeehhHHHH
Confidence 46788888888875
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.23 E-value=2.5e-07 Score=94.89 Aligned_cols=56 Identities=29% Similarity=0.443 Sum_probs=37.1
Q ss_pred EEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC-----cccCCeeEe
Q psy16196 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM-----DKISGRVNT 732 (950)
Q Consensus 665 I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~-----~~~~G~I~i 732 (950)
++++|++|.|.. ++|++ |++++|..++|+|++|||||||++.|+|.. .++.|.+..
T Consensus 4 l~~~~~~~~~~~----------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMSA----------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEEE----------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhhhhheeec----------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 678999999852 57888 899999999999999999999999999998 788887654
No 122
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=3.3e-07 Score=100.75 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=53.5
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------------eEEEEeccCcCC-CccHHHHH
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------------SIAFVPQQAWIQ-NATLRDNI 754 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------------~Iayv~Q~pwL~-ngTIreNI 754 (950)
..++|+.++++||+||||||+++.|.|.+.+.+|+|.+.| .+.|++|+.-+. ..|++|||
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4578999999999999999999999999999999998754 256888887665 46889998
Q ss_pred hcC
Q psy16196 755 VFG 757 (950)
Q Consensus 755 lfg 757 (950)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.17 E-value=1.1e-06 Score=94.68 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=63.7
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe------CCeEEEEeccCcCCCccHHHHHh-cCCCCChhHHHH
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT------KGSIAFVPQQAWIQNATLRDNIV-FGKTHVPRRYNK 767 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i------~g~Iayv~Q~pwL~ngTIreNIl-fg~~~d~~~y~~ 767 (950)
.+++|++++|+||+|||||||++.+++.+. .|.+.. .+.+.|++.+.-. ..+++++. .|...+....++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 378999999999999999999999998654 454432 3578898876432 23433432 344455555555
Q ss_pred HHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 768 Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
+++.+.+.+. .+.....||+||+||+
T Consensus 102 ~~~~l~l~~~-----------~~~~~~~ls~g~~~~i 127 (279)
T 1nlf_A 102 VADGLLIQPL-----------IGSLPNIMAPEWFDGL 127 (279)
T ss_dssp HHHHEEECCC-----------TTSCCCTTSHHHHHHH
T ss_pred ccCceEEeec-----------CCCCcccCCHHHHHHH
Confidence 5665554321 2344567999999987
No 124
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.16 E-value=4.2e-07 Score=92.93 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=41.8
Q ss_pred eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------------eEEEEeccCcCCCc-cHHHHHh
Q psy16196 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------SIAFVPQQAWIQNA-TLRDNIV 755 (950)
Q Consensus 693 nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------------~Iayv~Q~pwL~ng-TIreNIl 755 (950)
|+++++|++++|+||+|||||||++.|.|.++ .+.+.+ .++|++|++-.|.. +.++|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999874 233322 47899998876543 3444443
No 125
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.16 E-value=3.9e-06 Score=100.36 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 821 SMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHE 900 (950)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~ 900 (950)
+++.+++.++..++.....++++.+.+.-.. ..+......|+.+|+++.++..++..++.+.....+.+...++|.
T Consensus 39 ~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 114 (598)
T 3qf4_B 39 LIMVFVFVTVSSILGVLSPYLIGKTIDVVFV----PRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRK 114 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666677777777888877764321 001122344667777777777777778888888888899999999
Q ss_pred HHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHH
Q psy16196 901 FLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLC 947 (950)
Q Consensus 901 ~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~ 947 (950)
++++++++.|++||+.+++|+++||+++|++.+++.++..+..++..
T Consensus 115 ~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~ 161 (598)
T 3qf4_B 115 ELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSG 161 (598)
T ss_dssp HHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887666555443
No 126
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.13 E-value=4.7e-07 Score=110.11 Aligned_cols=85 Identities=22% Similarity=0.230 Sum_probs=57.2
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-ccCCeeEeC--CeEEEE
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTK--GSIAFV 739 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-~~~G~I~i~--g~Iayv 739 (950)
+.+.++++. ++- -+. .+.++++|+||+ |+.++|+||+|||||||++.|.|... +..|.+.-. ..++|+
T Consensus 549 ~~i~i~~~r--HP~-le~---~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v 619 (765)
T 1ewq_A 549 DRLQIRAGR--HPV-VER---RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLF 619 (765)
T ss_dssp SSEEEEEEC--CTT-GGG---TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCC
T ss_pred CcEEEEEeE--Cce-Ecc---CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeH
Confidence 467777762 221 000 246899999999 99999999999999999999999864 677875322 357888
Q ss_pred eccCcCCC-ccHHHHHhcCCC
Q psy16196 740 PQQAWIQN-ATLRDNIVFGKT 759 (950)
Q Consensus 740 ~Q~pwL~n-gTIreNIlfg~~ 759 (950)
+| +|. -+++|||.+|..
T Consensus 620 ~~---i~~~~~~~d~l~~g~S 637 (765)
T 1ewq_A 620 DG---IYTRIGASDDLAGGKS 637 (765)
T ss_dssp SE---EEEECCC------CCS
T ss_pred HH---hhccCCHHHHHHhccc
Confidence 77 443 588999887753
No 127
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.09 E-value=1.3e-07 Score=98.60 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC---cccCCeeEe--------CC--------------eEEEEeccC------cCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM---DKISGRVNT--------KG--------------SIAFVPQQA------WIQN 747 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~---~~~~G~I~i--------~g--------------~Iayv~Q~p------wL~n 747 (950)
+..++|+||+||||||+.+.|.+.+ .++.|.+.. +| .++++.|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999998776 777787765 33 367788876 5566
Q ss_pred ccHHHHHhcCCCCChhHHHHHHHHhcCCchhhhCCCCCcccc-cCCCCCCCHH
Q psy16196 748 ATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI-GEKGINLSGG 799 (950)
Q Consensus 748 gTIreNIlfg~~~d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~I-Ge~G~~LSGG 799 (950)
.++.+++. .+..++++..|...+.+.....+.++.+ .++|+-++|+
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~ 131 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR 131 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC
Confidence 77778763 3456778888888877776666655555 3567777776
No 128
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.07 E-value=3.2e-07 Score=115.08 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=57.4
Q ss_pred CcEEEEe-----eEEEecCCCCCCCCCCCCcccceeEEeeC-------CeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 663 DPLVIEN-----GTFTWERNTEGEGAESPPTLQNINMRVRE-------GTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 663 ~~I~~~~-----~sf~w~~~~~~~~~~~~~vL~~Inl~i~~-------G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
..++++| +++.|.. +.++++|++|++++ |++++|+||+||||||||+.+ |...+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--------~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--------DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---- 815 (1022)
T ss_dssp CCEEEEEECCCC------C--------CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----
T ss_pred ceEEEEeccccEEEEEecC--------CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----
Confidence 4689999 8888743 46899999999987 999999999999999999999 988752
Q ss_pred EeCCeEE-EEeccCcCCCccHHHHHh
Q psy16196 731 NTKGSIA-FVPQQAWIQNATLRDNIV 755 (950)
Q Consensus 731 ~i~g~Ia-yv~Q~pwL~ngTIreNIl 755 (950)
.+++ ||||++. .-|+.|||.
T Consensus 816 ---aqiG~~Vpq~~~--~l~v~d~I~ 836 (1022)
T 2o8b_B 816 ---AQMGCYVPAEVC--RLTPIDRVF 836 (1022)
T ss_dssp ---HTTTCCEESSEE--EECCCSBEE
T ss_pred ---hheeEEeccCcC--CCCHHHHHH
Confidence 2455 9999974 567777774
No 129
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.07 E-value=1.1e-06 Score=103.42 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=58.7
Q ss_pred eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHh-cCCCCChhHHHHHHHH
Q psy16196 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIV-FGKTHVPRRYNKVIDA 771 (950)
Q Consensus 693 nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIl-fg~~~d~~~y~~Vi~a 771 (950)
+..+++|+.++|+||+|||||||++.++|...+. |.- .+.|++|++- .++++|.. +|- +. ++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~----vi~~~~ee~~---~~l~~~~~~~g~--~~---~~~~-~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KER----AILFAYEESR---AQLLRNAYSWGM--DF---EEME-R 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCC----EEEEESSSCH---HHHHHHHHTTSC--CH---HHHH-H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCC----EEEEEEeCCH---HHHHHHHHHcCC--CH---HHHH-h
Confidence 4589999999999999999999999999998774 431 1567788862 36777753 332 21 1111 1
Q ss_pred hcCCchhhhCCCCCcccccCCCCCCCHHHhhcc
Q psy16196 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804 (950)
Q Consensus 772 c~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI 804 (950)
.++ ......+-..|||||+||+
T Consensus 341 ~g~-----------~~~~~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 341 QNL-----------LKIVCAYPESAGLEDHLQI 362 (525)
T ss_dssp TTS-----------EEECCCCGGGSCHHHHHHH
T ss_pred CCC-----------EEEEEeccccCCHHHHHHH
Confidence 122 1222233457999999998
No 130
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.05 E-value=4.1e-07 Score=92.11 Aligned_cols=73 Identities=14% Similarity=0.337 Sum_probs=52.9
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCc-------------ccCCeeEeCCe-E---------EEEeccCcCCCccH
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMD-------------KISGRVNTKGS-I---------AFVPQQAWIQNATL 750 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~-------------~~~G~I~i~g~-I---------ayv~Q~pwL~ngTI 750 (950)
+..-+|++++|+||+|||||||+++|+++++ |..|+ ++|. . ..+.|+.+++.+++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~~ 91 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGSY 91 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhhh
Confidence 3445899999999999999999999999886 44554 3331 0 12367889999999
Q ss_pred HHHHhcCCCCChhHHHHHHHH
Q psy16196 751 RDNIVFGKTHVPRRYNKVIDA 771 (950)
Q Consensus 751 reNIlfg~~~d~~~y~~Vi~a 771 (950)
.+| .||.+. +..++++++
T Consensus 92 ~~n-~YGt~~--~~v~~~l~~ 109 (197)
T 3ney_A 92 QGN-MFGTKF--ETVHQIHKQ 109 (197)
T ss_dssp TTE-EEEEEH--HHHHHHHHT
T ss_pred hce-ecccch--hhHHHHHhc
Confidence 999 588652 345666665
No 131
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.02 E-value=4.6e-07 Score=95.69 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=35.5
Q ss_pred cEEEEee-EEEecCCCCCCCCCCCCcccceeEEeeC---CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 664 PLVIENG-TFTWERNTEGEGAESPPTLQNINMRVRE---GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 664 ~I~~~~~-sf~w~~~~~~~~~~~~~vL~~Inl~i~~---G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|+ +++|+. +.++|+|+||+|++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--------~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--------EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--------cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 999932 45799999999999 9999999999999999999997754
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=4e-07 Score=91.37 Aligned_cols=69 Identities=12% Similarity=0.348 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcc-cCCeeEe----------CCeEEE-----------EeccCcCCCccHHHHHh
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNT----------KGSIAF-----------VPQQAWIQNATLRDNIV 755 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~-~~G~I~i----------~g~Iay-----------v~Q~pwL~ngTIreNIl 755 (950)
+|++++|+||+|||||||++.|++++++ ..|.|.. +| +.| +.|..+++.+++.+| .
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~~n-~ 81 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENG-KNYYFVSHDQMMQDISNNEYLEYGSHEDA-M 81 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBT-TTBEECCHHHHHHHHHTTCEEEEEEETTE-E
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCC-CeeEEeCHHHHHHHHHcCCceEEEEEcCc-c
Confidence 6899999999999999999999998863 4555532 12 222 235677888888888 5
Q ss_pred cCCCCChhHHHHHHH
Q psy16196 756 FGKTHVPRRYNKVID 770 (950)
Q Consensus 756 fg~~~d~~~y~~Vi~ 770 (950)
+|.+ .+..+++++
T Consensus 82 yg~~--~~~i~~~l~ 94 (180)
T 1kgd_A 82 YGTK--LETIRKIHE 94 (180)
T ss_dssp EEEE--HHHHHHHHH
T ss_pred cccc--HHHHHHHHH
Confidence 6654 233444444
No 133
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.99 E-value=9.5e-06 Score=96.70 Aligned_cols=132 Identities=15% Similarity=0.093 Sum_probs=92.0
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 808 VYLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICV 887 (950)
Q Consensus 808 vy~~Y~~~~G~~~~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~vY~~l~~~~~~~~~~~~~~~ 887 (950)
.++.|++... ..+++.+++.++..++.....+++++|.+.... + .+......+..+++++.++..++..++.+..
T Consensus 13 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (587)
T 3qf4_A 13 TLARYLKPYW-IFAVLAPLFMVVEVICDLSQPTLLARIVDEGIA--R--GDFSLVLKTGILMLIVALIGAVGGIGCTVFA 87 (587)
T ss_dssp CGGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--T--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555432 233344455667777888889999999875421 0 0101112233444445555556666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHH
Q psy16196 888 AEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSW 944 (950)
Q Consensus 888 ~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~ 944 (950)
...+.+...+++.++++++++.|++||+.+++|+++||+++|++.+++.+...+..+
T Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~ 144 (587)
T 3qf4_A 88 SYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIV 144 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999999999776554443
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.96 E-value=2.7e-06 Score=96.42 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=33.9
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
--++|+|++++|+.++|||++|||||||+++|.|..
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 458999999999999999999999999999999984
No 135
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.93 E-value=1.9e-06 Score=88.02 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.3
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
++|++|++++|+||+||||||+++.|.+.+.+..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999866555
No 136
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.91 E-value=3.6e-07 Score=94.87 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=33.9
Q ss_pred eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 693 nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
++++++ ++++|+||+|||||||+++|.|.+.|++|.|.++|
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 456666 89999999999999999999999999999998765
No 137
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.90 E-value=5.8e-06 Score=84.69 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=43.3
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHhcC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFG 757 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIlfg 757 (950)
++++|++++|+|++||||||+++.|.+.++ .+.|++|++.++++ +|+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH---hHhhcc
Confidence 467899999999999999999999999875 38899999999876 677554
No 138
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.89 E-value=2.3e-06 Score=93.02 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=40.4
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
-++|+++++.+++|++++|+||+|||||||++.|+|.+.+.+|
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 3579999999999999999999999999999999999998876
No 139
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.87 E-value=4.6e-05 Score=90.82 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=91.8
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHH-HHHHHHHHHHHHHHHHHHHHH
Q psy16196 809 YLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYL-GVYGALGLGQVLSVLTSSICV 887 (950)
Q Consensus 809 y~~Y~~~~G~~~~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl-~vY~~l~~~~~~~~~~~~~~~ 887 (950)
++.|++... ..+++.+++.++..++.....++++++.+.-.. ..+.....++ .+++++.++..++..++.+..
T Consensus 16 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 16 LWPTIAPFK-AGLIVAGIALILNAASDTFMLSLLKPLLDDGFG-----KTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp HHHHHGGGH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTT-----STTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554432 233334455566677777778888888865321 0111111222 234555556666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHHH
Q psy16196 888 AEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLLC 947 (950)
Q Consensus 888 ~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~~ 947 (950)
...+.+....++.++++++++.|++||+.+++|.++||+++|++.++..+...+..++..
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~ 149 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVRE 149 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999999999877666555443
No 140
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.87 E-value=6e-05 Score=89.80 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=89.5
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCCCcchHHH-HHHHHHHHHHHHHHHHHHHH
Q psy16196 809 YLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLG-VYGALGLGQVLSVLTSSICV 887 (950)
Q Consensus 809 y~~Y~~~~G~~~~~~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~~~~~yl~-vY~~l~~~~~~~~~~~~~~~ 887 (950)
++.|++...+ .+++.+++.++..++.....+++.++.+.-.. ..+.....++. +++++.++..++..++.+..
T Consensus 16 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 16 LWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFG-----NAESNFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544322 23333445566666777777888877764220 01111122232 24555555666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHHH
Q psy16196 888 AEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWLL 946 (950)
Q Consensus 888 ~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~~ 946 (950)
...+.+....++.++++++++.|++||+.+++|+++||+++|++.+++.+...+..++.
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~ 148 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVR 148 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999987665555444
No 141
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=4.5e-06 Score=85.00 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..+.++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567999999999999999999999999999999998765
No 142
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.77 E-value=2.9e-06 Score=86.54 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=42.3
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee--EeCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--NTKG 734 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I--~i~g 734 (950)
.....++.++..++|++++|+||+||||||++++|.+.+. ..|.+ .++|
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 3456788889999999999999999999999999999987 77877 5553
No 143
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.75 E-value=3.2e-06 Score=85.27 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=39.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC-------eEEEEeccCcC-CCccHHHHHh
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------SIAFVPQQAWI-QNATLRDNIV 755 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g-------~Iayv~Q~pwL-~ngTIreNIl 755 (950)
|++++|+||+|||||||++.|.+ +.+|.+.++| .+++++|.... .+.|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHH
Confidence 68999999999999999999986 6678888865 24556654321 2345666654
No 144
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=5.7e-06 Score=87.16 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=31.9
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHc--CCCcccCCeeEeC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALC--GEMDKISGRVNTK 733 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLL--Ge~~~~~G~I~i~ 733 (950)
.|++|++++|+||+|||||||++.|+ |..++.+|.+.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78999999999999999999999999 5545555555443
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.71 E-value=5.6e-06 Score=83.34 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
|+.++|+||+|||||||++.|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999998
No 146
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.64 E-value=3.5e-06 Score=88.95 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHc---CCCcccCCeeEeCC---------eEEEEeccCcC-CCccHHHHHhc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALC---GEMDKISGRVNTKG---------SIAFVPQQAWI-QNATLRDNIVF 756 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLL---Ge~~~~~G~I~i~g---------~Iayv~Q~pwL-~ngTIreNIlf 756 (950)
++++++|+||+|||||||++.|. |...++.|+|..+| .+.++.|++.+ ++.|+.+||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47899999999999999999999 99999999887653 23445565544 34578888753
No 147
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.61 E-value=1.5e-05 Score=83.50 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=32.2
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCC--Ccc-----cCCeeEeCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGE--MDK-----ISGRVNTKG 734 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe--~~~-----~~G~I~i~g 734 (950)
-+++|++++|+||+|||||||++.|++. .++ ..|.+.+++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4889999999999999999999999994 544 345555543
No 148
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.58 E-value=0.00016 Score=86.40 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCCCCcccCcccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16196 823 AAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVG--KRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHE 900 (950)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~WL~~W~~~~~~~~~~~~~~~--~~~~yl~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lH~ 900 (950)
+.+++.++..++.....++++++.+.-.. . ..... ....++.+++++.++..++..++.+.....+.+...+++.
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 99 (595)
T 2yl4_A 23 AAVGFLTMSSVISMSAPFFLGKIIDVIYT--N-PTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRT 99 (595)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--C-TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666667777766653210 0 00000 1122334455555555566666666666778899999999
Q ss_pred HHHHHHHcCccccccccccccccccccCchHHhhhhhHHHHHHHH
Q psy16196 901 FLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCIKSWL 945 (950)
Q Consensus 901 ~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~Lp~~~~~~~ 945 (950)
++++++++.|++||+.+++|+++||+++|++.+++.+...+..++
T Consensus 100 ~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~ 144 (595)
T 2yl4_A 100 SLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGL 144 (595)
T ss_dssp HHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999977655444443
No 149
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.55 E-value=2.3e-05 Score=88.29 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=46.0
Q ss_pred EeeCCeEEEEEcCCCCChhHHHH--HHcCCCcccCC-----eeEeCCeEEEE-------eccCcCCCccHHHHHhcCCCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVS--ALCGEMDKISG-----RVNTKGSIAFV-------PQQAWIQNATLRDNIVFGKTH 760 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~--aLLGe~~~~~G-----~I~i~g~Iayv-------~Q~pwL~ngTIreNIlfg~~~ 760 (950)
-|++|++++|+||+|||||||++ ++.+..++..| .+++++.-.+- .+..-+...++.+||.+..++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 58899999999999999999999 55677777555 45554311000 000011123678899888877
Q ss_pred ChhH
Q psy16196 761 VPRR 764 (950)
Q Consensus 761 d~~~ 764 (950)
+.+.
T Consensus 254 ~~~~ 257 (400)
T 3lda_A 254 NADH 257 (400)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 6543
No 150
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.55 E-value=2e-05 Score=96.55 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=64.2
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc-cCCeeEeC---CeEEEEeccCcCCCccHHHHHhcCCCC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTK---GSIAFVPQQAWIQNATLRDNIVFGKTH 760 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~-~~G~I~i~---g~Iayv~Q~pwL~ngTIreNIlfg~~~ 760 (950)
+.++++|++|+ ++|++++|+||+|||||||++.|.|...+ ..|.. +. ..++++.| .+..-++.||+..+...
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~--i~~~~~~~d~l~~~~st 669 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR--IFTRVGAADDLASGRST 669 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE--EEEEEC-----------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH--HHhhCCHHHHHHhhhhh
Confidence 46799999999 99999999999999999999999886432 23421 11 24666666 22344788999876432
Q ss_pred ChhHHHHHHHHhcCCchhhhCCCCCcccccCCCCCCCHHHhhcccHHHHHHHHHh
Q psy16196 761 VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQVYLHYLKS 815 (950)
Q Consensus 761 d~~~y~~Vi~ac~L~~Di~~Lp~Gd~T~IGe~G~~LSGGQKQRI~~~vy~~Y~~~ 815 (950)
-.....++..+.. ...+..-=.+.|=|..++.-.+..+.+.+. .++..
T Consensus 670 f~~e~~~~~~il~------~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll-~~l~~ 717 (800)
T 1wb9_A 670 FMVEMTETANILH------NATEYSLVLMDEIGRGTSTYDGLSLAWACA-ENLAN 717 (800)
T ss_dssp CHHHHHHHHHHHH------HCCTTEEEEEESCCCCSSSSHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHHHH------hccCCCEEEEECCCCCCChhHHHHHHHHHH-HHHHh
Confidence 1122223332222 122233334566666666544444434443 44443
No 151
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.54 E-value=2.6e-05 Score=85.03 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCcccceeEEeeCCe------EEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHH----h
Q psy16196 686 PPTLQNINMRVREGT------LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNI----V 755 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~------lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNI----l 755 (950)
...|++++..+.+++ +++|+||+|||||||++.|.+.+....+ .|.+++++|+.+..+...++.. .
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~----~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD----HPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC----CCeEEEEeecccccchhhhhhHHHHhh
Confidence 356888888888776 9999999999999999999988764211 2468889999887765554432 1
Q ss_pred cCC--CCChhHHHHHHHHh
Q psy16196 756 FGK--THVPRRYNKVIDAC 772 (950)
Q Consensus 756 fg~--~~d~~~y~~Vi~ac 772 (950)
+|. .+|.+...++++..
T Consensus 149 ~g~P~~~D~~~l~~~L~~L 167 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNAI 167 (321)
T ss_dssp TTSGGGBCHHHHHHHHHHH
T ss_pred ccCcccccHHHHHHHHHhh
Confidence 343 35666666666554
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.52 E-value=1.8e-05 Score=82.17 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCcccceeE-EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 685 SPPTLQNINM-RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 685 ~~~vL~~Inl-~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
+-+.|+++.. .+++|++++|+||+|||||||++.|++...+.+|. +.|+..+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~------v~~~~~~ 60 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP------CIYVTTE 60 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCC------EEEEESS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCe------EEEEEcc
Confidence 3457888888 89999999999999999999999999988766554 5565544
No 153
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.51 E-value=1.6e-05 Score=87.41 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=49.0
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCccc--------------ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQ--------------NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~--------------~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+.+.|+|++|.|+. ++.+|+ |+++.|.+|+.++|+||+|+|||||++.|.+....
T Consensus 132 ~ri~Fe~ltp~yP~--------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 132 NKILFENLTPLHAN--------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TSCCTTTSCEESCC--------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCceeccccccCCC--------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 56899999999985 556788 99999999999999999999999999999887643
No 154
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.43 E-value=3.7e-05 Score=78.26 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=29.4
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
++.++|++++|+||+|||||||+++|.|.+ |.+.++|
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 566789999999999999999999999876 6666654
No 155
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.40 E-value=4.3e-05 Score=73.87 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=35.8
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pw 744 (950)
+|+++ +|+.++|+||+|||||||++++.|++.+ +|. ++.|++....
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~ 75 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASM 75 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTS
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHh
Confidence 46666 8999999999999999999999999876 451 3455555443
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.33 E-value=6.9e-05 Score=76.76 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
++|++++|+||+|||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.33 E-value=3.8e-05 Score=81.29 Aligned_cols=45 Identities=31% Similarity=0.616 Sum_probs=39.4
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
..+++++++++++| ++|+||+|||||||+++|.++.. .|.+.++|
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 35799999999999 99999999999999999999875 67776654
No 158
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.33 E-value=3.7e-05 Score=85.86 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=45.4
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe-C----C---eEEEEeccCc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT-K----G---SIAFVPQQAW 744 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i-~----g---~Iayv~Q~pw 744 (950)
.+|+++++.+++|+.++|+||+|||||||+++|.|+ .+|.+.. . + .+++++|...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhH
Confidence 579999999999999999999999999999999985 3677655 2 2 3666777654
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.31 E-value=3.3e-05 Score=77.10 Aligned_cols=37 Identities=32% Similarity=0.420 Sum_probs=33.1
Q ss_pred eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCe
Q psy16196 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729 (950)
Q Consensus 693 nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~ 729 (950)
++++++|+.++|+||+|+|||||+++|.+++.+.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4567789999999999999999999999999877774
No 160
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.31 E-value=0.0001 Score=91.31 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=45.5
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHH--------cCCCcccCC
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL--------CGEMDKISG 728 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aL--------LGe~~~~~G 728 (950)
..+.++++..-+-.. ..++.++++|++|++++|++++|+||+||||||+++.+ .|.+.|.++
T Consensus 630 ~~i~i~~~rHP~le~----~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 630 GRIILKASRHACVEV----QDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CEEEEEEECCTTTTT----C--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred cceEeecCccchhhh----cCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 357777654322110 01246899999999999999999999999999999999 776655543
No 161
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.28 E-value=0.0001 Score=91.11 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
+.++++|++|++++|++++|+||+||||||||+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 4689999999999999999999999999999999864
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.27 E-value=4.7e-05 Score=81.82 Aligned_cols=45 Identities=31% Similarity=0.616 Sum_probs=39.5
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
..+++++++++++| ++|+||+|||||||+++|.++.. .|.+.+++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 35799999999999 99999999999999999999875 67777654
No 163
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.25 E-value=8e-05 Score=75.81 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.3
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
.++|++++|+|++||||||+++.|.+.+++..|.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5689999999999999999999999998877766543
No 164
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00013 Score=75.99 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.8
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~ 733 (950)
+.++|++++|+|++|||||||+++|.|. .|+|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 4468999999999999999999999987 5666554
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.14 E-value=0.0001 Score=80.63 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=38.8
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+++++||++++|+.++|+|+.|+||||++..|.+.+.+..|+|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 357899999999999999999999999999999999887766544
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.07 E-value=0.0002 Score=73.56 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.8
Q ss_pred CcccceeE-EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 687 PTLQNINM-RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 687 ~vL~~Inl-~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
+.|+++.. .+++|++++|+||+|||||||++.+++ .. .+.+.|++.+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-------~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-------GKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-------CSEEEEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-------CCcEEEEECCC
Confidence 45777665 799999999999999999999999998 22 23566666554
No 167
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.03 E-value=0.00036 Score=78.18 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=43.9
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcC------------CCcccCCeeEeCC-----------------eEEEEeccCcC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCG------------EMDKISGRVNTKG-----------------SIAFVPQQAWI 745 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLG------------e~~~~~G~I~i~g-----------------~Iayv~Q~pwL 745 (950)
.+++|..++|||+.|+|||||+++|.| -.+|+.|.+.+.| ...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 4568889998876 24577788776
Q ss_pred CC
Q psy16196 746 QN 747 (950)
Q Consensus 746 ~n 747 (950)
..
T Consensus 96 ~~ 97 (392)
T 1ni3_A 96 TK 97 (392)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 168
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.03 E-value=0.00027 Score=86.44 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=35.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHH
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS 717 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~ 717 (950)
..|.++++. ..=|||||++||+|++|+|+|.+|||||||..
T Consensus 14 ~~I~i~gar--------------~hNLkni~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 14 GFVQVRGAR--------------QHNLKDISVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TEEEEEEEC--------------STTCCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred CeEEEeecc--------------ccCCCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 358888763 23499999999999999999999999999973
No 169
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.0002 Score=70.93 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=28.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
.+|++++|+|++||||||+++.|.+.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 469999999999999999999998764 5555543
No 170
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.00 E-value=0.00037 Score=75.35 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=43.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcCCCccHHHHHh
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIV 755 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL~ngTIreNIl 755 (950)
++|+.++++||+||||||++..|.+.+.+.+|. +|.++.++++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----~V~lv~~D~~--r~~a~eqL~ 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----KIAFITTDTY--RIAAVEQLK 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----CEEEEECCCS--STTHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----EEEEEecCcc--cchHHHHHH
Confidence 479999999999999999999999999887772 6889999984 556666654
No 171
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.98 E-value=0.00034 Score=77.62 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=31.0
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++++++++++| +++|+||+|||||||+.+|.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 478999999999 999999999999999999986
No 172
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.97 E-value=0.00071 Score=80.40 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccCchHHhhhhh
Q psy16196 872 LGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAI 937 (950)
Q Consensus 872 l~~~~~~~~~~~~~~~~~~~~~as~~lH~~ll~~vl~aP~~FFd~tp~GrIlNRFS~D~~~iD~~L 937 (950)
+.++..++..++.+.....+.+....++.++++++++.|++||+.+++|.++||+++|++.+++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~ 135 (578)
T 4a82_A 70 FVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFI 135 (578)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 333444445555666667778999999999999999999999999999999999999999988754
No 173
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.92 E-value=0.00037 Score=85.91 Aligned_cols=40 Identities=28% Similarity=0.573 Sum_probs=34.3
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
..|.++++. ..=|||||++||++++|+|+|.+|||||||.
T Consensus 24 ~~I~i~gar--------------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 24 DRLIVKGAR--------------EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CEEEEEEEC--------------SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred CcEEEeccc--------------ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 357888762 2349999999999999999999999999996
No 174
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.91 E-value=0.00038 Score=85.52 Aligned_cols=29 Identities=45% Similarity=0.771 Sum_probs=28.0
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
=|||||++||++++|+|+|.+|||||||.
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 49999999999999999999999999996
No 175
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.91 E-value=0.00024 Score=77.04 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=37.7
Q ss_pred eeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 692 Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
++++.++|+.++|+|++||||||++..|.+.+.+..|+| .++..++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV------~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV------VLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE------EEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE------EEEcccc
Confidence 456678999999999999999999999999998866654 4555554
No 176
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.90 E-value=0.00017 Score=79.87 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=40.7
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
.+++++++++++|..++|+|+.|+|||||++.|++.+.+..|++.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4788999999999999999999999999999999988776665543
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.88 E-value=0.00022 Score=83.65 Aligned_cols=41 Identities=39% Similarity=0.551 Sum_probs=35.9
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC-eeE-eCC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-RVN-TKG 734 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G-~I~-i~g 734 (950)
..+++|+.++|+|++|||||||+++|.|.+.+.+| ++. ++|
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 35789999999999999999999999999998886 564 555
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.87 E-value=8.4e-05 Score=89.72 Aligned_cols=81 Identities=22% Similarity=0.182 Sum_probs=56.8
Q ss_pred eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc--cCCeeEeCC-------------eEEEEeccCcCCCccHHHHHh--
Q psy16196 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK--ISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIV-- 755 (950)
Q Consensus 693 nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~--~~G~I~i~g-------------~Iayv~Q~pwL~ngTIreNIl-- 755 (950)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+| .|++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999976544 56766 222 478889998888889999986
Q ss_pred cCCCCChhHHHHHHHHhcC
Q psy16196 756 FGKTHVPRRYNKVIDACAL 774 (950)
Q Consensus 756 fg~~~d~~~y~~Vi~ac~L 774 (950)
.|...-.....+.++.|..
T Consensus 82 pG~~~f~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADA 100 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSE
T ss_pred CCccchHHHHHHHHhhcCc
Confidence 3433112334445555543
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.86 E-value=0.00072 Score=75.41 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=35.0
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC--CCcccCCeeEeC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDKISGRVNTK 733 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG--e~~~~~G~I~i~ 733 (950)
..+|+++++++| .++|||++|||||||+++|.| +++..+|.++..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 357999999998 999999999999999999999 667777766543
No 180
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.85 E-value=0.00027 Score=84.51 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC-CeeEeCC--------eEEEEeccC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS-GRVNTKG--------SIAFVPQQA 743 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~-G~I~i~g--------~Iayv~Q~p 743 (950)
..+++++++.+++|+.+.|+||+|+|||||+++|.|.+++.. |.+.+.+ .++||||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecch
Confidence 468999999999999999999999999999999999999887 6666532 578887653
No 181
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.83 E-value=0.00038 Score=85.97 Aligned_cols=30 Identities=47% Similarity=0.725 Sum_probs=28.4
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHH
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLV 716 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL 716 (950)
.=|||||++||++++|+|+|++|||||||.
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 349999999999999999999999999997
No 182
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.76 E-value=0.00074 Score=65.11 Aligned_cols=29 Identities=38% Similarity=0.660 Sum_probs=23.6
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
+..+++.+| +++|+||+||||||++.||.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 444555554 99999999999999999985
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.76 E-value=0.00056 Score=68.72 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=29.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcc-----------cCCeeEeCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDK-----------ISGRVNTKG 734 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~-----------~~G~I~i~g 734 (950)
.++|+|+.|||||||++.+.|...+ ..|+|.++|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC
Confidence 6899999999999999999997654 467777776
No 184
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.69 E-value=0.00061 Score=70.77 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=29.8
Q ss_pred ccceeEEee---CCeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 689 LQNINMRVR---EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 689 L~~Inl~i~---~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
|.++|+.+. +|.+++|.|+.||||||+++.|...+.. .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 555666665 8999999999999999999999998876 5444
No 185
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.69 E-value=0.00049 Score=74.41 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=36.2
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
++++|+ +|+.++|+|+.||||||++..|.+.+.+..|+|.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l 131 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 678888 99999999999999999999999999887766544
No 186
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.67 E-value=0.00046 Score=69.76 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 685 ~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
-..++++++++.+++ .++++|+.|+|||||++.+.+
T Consensus 12 ~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 346899999998887 579999999999999999987
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.63 E-value=0.0006 Score=75.59 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+++..++|+|++|||||||++.|+|.+.+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 357899999999999999999999988887776654
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.63 E-value=0.00051 Score=68.23 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=27.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
++|++++|+|+.||||||+.+.|.+.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999987765 55
No 189
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.56 E-value=0.00048 Score=70.53 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCC--eeEeC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--RVNTK 733 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G--~I~i~ 733 (950)
+.+++|.+++|+|+.||||||+.+.|.+.+.+..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44678999999999999999999999999887778 66555
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.55 E-value=0.00093 Score=67.44 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc-----c------cCCeeEeCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD-----K------ISGRVNTKG 734 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~-----~------~~G~I~i~g 734 (950)
.++|+|+.|||||||++.+.|... + ..|++.++|
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g 51 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC
Confidence 689999999999999999998742 3 356777777
No 191
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.54 E-value=0.00067 Score=66.78 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.|+.++|+|++||||||+++.|.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988764
No 192
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.46 E-value=0.0012 Score=65.90 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.2
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
++|++.++|..++|+|+.||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999754
No 193
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.37 E-value=0.0011 Score=75.66 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.1
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~ 727 (950)
+++.+|++++|+||+|||||||+.+|.+.+.+.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5577899999999999999999999998877655
No 194
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.37 E-value=0.0015 Score=65.42 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=20.7
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
++++++++.++. .++|+|+.|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 688999998877 789999999999999999987
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.35 E-value=0.00088 Score=77.50 Aligned_cols=45 Identities=31% Similarity=0.616 Sum_probs=38.8
Q ss_pred CCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
+..++++++++++| +.|+||+|+|||||+++|.++.. .|.+.++|
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 35789999999999 99999999999999999999875 56666654
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0011 Score=73.38 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred EEEEcCCCCChhHHHHHHcC-CCcccCCeeEeCC-----------eEEEEeccCcC
Q psy16196 702 VAIVGSVGAGKSSLVSALCG-EMDKISGRVNTKG-----------SIAFVPQQAWI 745 (950)
Q Consensus 702 vaIVG~vGSGKSTLL~aLLG-e~~~~~G~I~i~g-----------~Iayv~Q~pwL 745 (950)
+.++||+|+||||++++|.| .+.+..|.+.++| .++|++|.+++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE
Confidence 89999999999999999999 5788889887764 47788888765
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.20 E-value=0.00087 Score=78.92 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=41.9
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
.+++++++++ +|+.+.++||+|+|||||+++|.+++.+..|.|.+.|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4678888888 8999999999999999999999999988888887765
No 198
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.18 E-value=0.0014 Score=66.67 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=26.0
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
..+|.+++|+||+|||||||.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999988764
No 199
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.07 E-value=0.0028 Score=62.28 Aligned_cols=27 Identities=48% Similarity=0.641 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999874
No 200
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0018 Score=64.60 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=30.5
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
..++|.+++|+|+.||||||+.+.|.+.+....|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345799999999999999999999999887665554
No 201
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.002 Score=67.12 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=36.9
Q ss_pred CCcccce-eEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 686 PPTLQNI-NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 686 ~~vL~~I-nl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
-+.|+++ +--+++|++++|+||+|||||||+..++....+.. +++.|++-+
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~------~~v~~~~~e 60 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG------EPGIYVALE 60 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT------CCEEEEESS
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC------CeEEEEEcc
Confidence 3457766 66799999999999999999999776665543322 345566554
No 202
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.92 E-value=0.004 Score=63.22 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=23.4
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
+.++++.+ .+++|+||+||||||++.||.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 499999999999999999984
No 203
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.90 E-value=0.0028 Score=70.01 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=31.0
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCe
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~ 729 (950)
-+++|+++.|.||.|||||||+..++++..+..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 37899999999999999999999999988765553
No 204
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.84 E-value=0.0031 Score=68.29 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=32.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc-ccCCee--EeCCeEEEEeccC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRV--NTKGSIAFVPQQA 743 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~-~~~G~I--~i~g~Iayv~Q~p 743 (950)
.++..++|+|++|+|||||+++|+|.-. ..++.. ..+...+++.|+.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 3455899999999999999999999742 222221 1223456777653
No 205
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.79 E-value=0.0023 Score=69.10 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=37.9
Q ss_pred cc-eeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 690 QN-INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 690 ~~-Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
++ ++++.+ |+.++++|+.|+||||++..|.+.+.+..|+ +.++..++
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~------v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFK------VGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCC------EEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCe------EEEEecCC
Confidence 35 777776 9999999999999999999999998876554 45555554
No 206
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.75 E-value=0.0033 Score=71.12 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.9
Q ss_pred cceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 690 ~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
++++++ +|+.++++|+.||||||++..|.+.+.+..|+|.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 567777 89999999999999999999999999887766654
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.72 E-value=0.0044 Score=69.24 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=31.8
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCC-----------CcccCCeeEeCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGE-----------MDKISGRVNTKG 734 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe-----------~~~~~G~I~i~g 734 (950)
.++.|..++|||++|+|||||+++|.|. .+|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999998 566677776654
No 208
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.70 E-value=0.0034 Score=62.06 Aligned_cols=28 Identities=25% Similarity=0.295 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCccc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKI 726 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~ 726 (950)
-..++|+|++|||||||++.|++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999987643
No 209
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.57 E-value=0.007 Score=69.27 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCc------------ccCCeeEeCCe
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMD------------KISGRVNTKGS 735 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~------------~~~G~I~i~g~ 735 (950)
-.++|+|++|+|||||++.|+|+.. +.+|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 4799999999999999999999853 55677777774
No 210
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.53 E-value=0.0017 Score=72.33 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=35.1
Q ss_pred CcEEEEeeEEEecCCCCCCCCCCCCcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCe
Q psy16196 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729 (950)
Q Consensus 663 ~~I~~~~~sf~w~~~~~~~~~~~~~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~ 729 (950)
+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|+|.-....|.
T Consensus 16 ~~v~~~~l~~~~~~---------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHR---------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHT---------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCC---------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 45777777776643 45788999877 999999999999999998875554443
No 211
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.52 E-value=0.0038 Score=65.73 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=29.7
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
..+++.++.++|++||||||+.+.|.+.+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 456789999999999999999999987764 23444443
No 212
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.50 E-value=0.0092 Score=66.33 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc-----------ccCCeeEeCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD-----------KISGRVNTKG 734 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~-----------~~~G~I~i~g 734 (950)
.++|+|++|+|||||++.|.|... +..|.+.++|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN 225 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC
Confidence 499999999999999999999865 4567888877
No 213
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.47 E-value=0.0067 Score=66.84 Aligned_cols=28 Identities=39% Similarity=0.701 Sum_probs=22.9
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHH
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSAL 719 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aL 719 (950)
+..++..+| +++|+||+|||||||+.||
T Consensus 16 ~~~i~f~~~-~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEECCSE-EEEEECCTTSSHHHHHHHH
T ss_pred CeEEcCCCC-eEEEECCCCCCHHHHHHHH
Confidence 344555554 9999999999999999997
No 214
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.43 E-value=0.0032 Score=73.69 Aligned_cols=31 Identities=39% Similarity=0.688 Sum_probs=29.2
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHH
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aL 719 (950)
.++++++++.+| +++|+|++|||||||+.+|
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHH
Confidence 477899999999 9999999999999999999
No 215
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.41 E-value=0.0045 Score=69.73 Aligned_cols=35 Identities=26% Similarity=0.133 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
.+..++|+||+||||||+++.|++.+....+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 57789999999999999999999988777776654
No 216
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.35 E-value=0.0073 Score=64.85 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=27.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g 734 (950)
.+|.++.|+||+||||||+.+.|..+++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3578999999999999999999987653 24455543
No 217
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.32 E-value=0.0083 Score=59.46 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999997533
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.32 E-value=0.0042 Score=62.83 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..+++|+|++||||||+.+.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997765
No 219
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.31 E-value=0.0093 Score=59.02 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|++|+|||||++.+.|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 220
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.20 E-value=0.0058 Score=61.03 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.++|+||+||||+||++.|+.+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
No 221
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.14 E-value=0.0099 Score=58.47 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 222
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.13 E-value=0.012 Score=57.11 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 223
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.10 E-value=0.0097 Score=59.01 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.+|.+++++|+.||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999743
No 224
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.09 E-value=0.0098 Score=60.20 Aligned_cols=21 Identities=24% Similarity=0.703 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++|+|+.||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 225
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.08 E-value=0.011 Score=61.34 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
.++|+|++|+|||||++.|+|.-...+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998776655
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.04 E-value=0.0055 Score=64.53 Aligned_cols=35 Identities=34% Similarity=0.641 Sum_probs=25.7
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.++++++.+++| +.|+||+|+|||||+++|.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 355566666666 88999999999999999998764
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.99 E-value=0.0064 Score=62.98 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+.-.++|+||+||||||+.+.|...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999997544
No 228
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.97 E-value=0.0086 Score=69.16 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=33.6
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHcC--CCcccCCeeEe
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDKISGRVNT 732 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG--e~~~~~G~I~i 732 (950)
.+++++.++..+.|+|++||||||++++|+. .+....|++.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4678888999999999999999999999876 34445565543
No 229
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.92 E-value=0.003 Score=69.22 Aligned_cols=38 Identities=34% Similarity=0.611 Sum_probs=34.3
Q ss_pred CcccceeEEeeCCeE--EEEEcCCCCChhHHHHHHcCCCc
Q psy16196 687 PTLQNINMRVREGTL--VAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 687 ~vL~~Inl~i~~G~l--vaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+++++++.+++|+. ++++|+.||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999998 99999999999999999988764
No 230
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.86 E-value=0.0093 Score=60.24 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999988
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.85 E-value=0.013 Score=65.52 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=25.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
+++..+++.+ .+++|+|++||||||++.||.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3556666666 499999999999999999973
No 232
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.82 E-value=0.013 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997553
No 233
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.78 E-value=0.013 Score=58.27 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++|.++.|+|+.||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997544
No 234
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.74 E-value=0.0024 Score=70.40 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=38.1
Q ss_pred CCcccceeEEeeCCeE--EEEEcCCCCChhHHHHHHcCCCcccCCe
Q psy16196 686 PPTLQNINMRVREGTL--VAIVGSVGAGKSSLVSALCGEMDKISGR 729 (950)
Q Consensus 686 ~~vL~~Inl~i~~G~l--vaIVG~vGSGKSTLL~aLLGe~~~~~G~ 729 (950)
+.++++++..++.|++ +.++||.|+||||+++++.+++.+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 3578889999999998 9999999999999999999987665543
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.72 E-value=0.0089 Score=65.45 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=37.0
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEe
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP 740 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~ 740 (950)
.|+.+.--+++|+++.|.|++|+|||||+.-++..... . ++.++|++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~-----g~~Vl~fS 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D-----DRGVAVFS 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T-----TCEEEEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c-----CCeEEEEe
Confidence 46666667899999999999999999999988766544 2 24577766
No 236
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.70 E-value=0.0043 Score=63.19 Aligned_cols=26 Identities=46% Similarity=0.672 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCccc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDKI 726 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~~ 726 (950)
+++|+|++||||||+++.|.+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 237
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.70 E-value=0.0061 Score=63.32 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=35.6
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcC-CCccHHHHH
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWI-QNATLRDNI 754 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL-~ngTIreNI 754 (950)
.+.+|+.++|+||+||||||++..++.+.....|. ...+.++-|.|-. ..-++.+|+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHH
Confidence 34579999999999999999888776554333332 1234555565532 122444554
No 238
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.66 E-value=0.015 Score=57.68 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|.+++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999996544
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.64 E-value=0.015 Score=56.56 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHH
Q psy16196 701 LVAIVGSVGAGKSSLVSAL 719 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aL 719 (950)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.63 E-value=0.015 Score=58.53 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
..+++|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999875
No 241
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.57 E-value=0.015 Score=58.56 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|.+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998876
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.54 E-value=0.012 Score=64.87 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=34.1
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
-+++|+++.|.||.|||||||+..++....... +.+.|++-+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------GIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEECCC
Confidence 478999999999999999999999887765433 3566666553
No 243
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.52 E-value=0.012 Score=57.62 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
..++|+|++|||||||+..|++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999998764
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.43 E-value=0.021 Score=62.11 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+++.+++|+||+|||||||...|...+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4677999999999999999999998774
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.41 E-value=0.019 Score=56.87 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++..++++|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999996544
No 246
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.34 E-value=0.013 Score=57.91 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++..+.|+|++||||||+.+.|...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999744
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.34 E-value=0.02 Score=58.03 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++|.+++|+|+.||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997654
No 248
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.26 E-value=0.0093 Score=68.52 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=42.2
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-----~~Vl~~s~E 241 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-----ENVAIFSLE 241 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-----CCEEEEESS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-----CcEEEEECC
Confidence 468888878999999999999999999999999988766444 257777755
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.23 E-value=0.013 Score=61.52 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.+++|+||+|||||||.+.|.+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999997654
No 250
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.21 E-value=0.023 Score=57.36 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+|.+++|+|+.||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999776543
No 251
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.17 E-value=0.022 Score=57.80 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=24.7
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.++|.+++|+|+.||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999986543
No 252
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.12 E-value=0.03 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999987
No 253
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.038 Score=53.30 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999974
No 254
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.01 E-value=0.023 Score=56.61 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++.+++|+|+.||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999997544
No 255
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.01 E-value=0.027 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
++-+++|+|+.||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 256
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.97 E-value=0.027 Score=54.17 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999998653
No 257
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.95 E-value=0.026 Score=59.05 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+++||++|+|||||++.|+|.-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998753
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.95 E-value=0.022 Score=59.03 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++|..++|+|+.||||||+.+.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997643
No 259
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.87 E-value=0.035 Score=61.32 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
|-.++|||.+|+|||||+++|.|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999983
No 260
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.80 E-value=0.025 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.80 E-value=0.03 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHcC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++.|+|+.||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999976
No 262
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.78 E-value=0.036 Score=54.86 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC-----CcccCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE-----MDKISG 728 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe-----~~~~~G 728 (950)
.++|+|+.|+|||||++.+++. +.++.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6899999999999999876543 455545
No 263
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.75 E-value=0.029 Score=56.23 Aligned_cols=23 Identities=39% Similarity=0.728 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998755
No 264
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.73 E-value=0.029 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999986
No 265
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.71 E-value=0.019 Score=70.69 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=29.2
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+.+++|+.+.++||+|||||||+++|.|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998754
No 266
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.70 E-value=0.025 Score=55.79 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=18.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++.++.|+|+.||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999986443
No 267
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.70 E-value=0.034 Score=54.23 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.70 E-value=0.033 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
++.+++|+|+.||||||+.+.|...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988644
No 269
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.69 E-value=0.033 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+.-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999999864
No 270
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.65 E-value=0.036 Score=53.94 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+.-.++|+|+.|+|||||++.+.+.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45679999999999999999998753
No 271
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.59 E-value=0.031 Score=59.41 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|||++|+|||||+++|+|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
No 272
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.56 E-value=0.026 Score=56.47 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=23.9
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.+++.+++|+|+.||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999996543
No 273
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.56 E-value=0.032 Score=55.19 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 78999999999999999999874
No 274
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.56 E-value=0.027 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|+.|+|||||++.+++.-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 275
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.54 E-value=0.019 Score=62.09 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.4
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+.++++.-+.+.||+|+|||||+++|.++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467888999999999999999999999864
No 276
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.51 E-value=0.028 Score=53.81 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 277
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.029 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|+.|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.50 E-value=0.03 Score=53.47 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 279
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.50 E-value=0.034 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
++.+++|+||+|||||||...|...+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 356899999999999999999987653
No 280
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.47 E-value=0.03 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.46 E-value=0.03 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 282
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.43 E-value=0.038 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998653
No 283
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.42 E-value=0.058 Score=53.96 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=29.2
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..++..-+.+ .|..++|+||+|||||||...|....
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566665554 68899999999999999999997654
No 284
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.41 E-value=0.03 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 285
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.38 E-value=0.033 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 286
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.36 E-value=0.031 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.34 E-value=0.025 Score=63.95 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
++..++++||.||||||++..|.+.+....++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 678999999999999999999999887755544
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.31 E-value=0.039 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+++|+|+.||||||+.+.|...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999977654
No 289
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.31 E-value=0.033 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998653
No 290
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.28 E-value=0.016 Score=66.64 Aligned_cols=36 Identities=33% Similarity=0.652 Sum_probs=31.6
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
..++++++.+++| +.++||+|+|||||++++.++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 4677888889988 88999999999999999998753
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.27 E-value=0.037 Score=58.67 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.++++|+.|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999854
No 292
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.26 E-value=0.033 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 293
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.23 E-value=0.045 Score=60.25 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=34.4
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCC--cccCCeeEeCCeEEEEeccC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~--~~~~G~I~i~g~Iayv~Q~p 743 (950)
-+++|+++.|.||+|||||||+..+.... +...|. ..+.+.|++-+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCC
Confidence 47899999999999999999999988753 222111 134677777653
No 294
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.20 E-value=0.043 Score=56.09 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++|.+++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999996544
No 295
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.20 E-value=0.034 Score=54.13 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 296
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.16 E-value=0.033 Score=54.34 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999876
No 297
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.13 E-value=0.042 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999999864
No 298
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.11 E-value=0.042 Score=59.27 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.10 E-value=0.046 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++.+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999996544
No 300
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.09 E-value=0.048 Score=58.75 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=30.2
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
..+|+..+.+ .|.-++|+|++|+||||+...|++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4677877777 899999999999999999999986
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.09 E-value=0.043 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997655
No 302
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.09 E-value=0.047 Score=59.57 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=33.8
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCccc--CCeeEeCCeEEEEecc
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKI--SGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~--~G~I~i~g~Iayv~Q~ 742 (950)
-+++|+++.|.||+|||||||+..+....... .|- ..+++.|++=+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECC
Confidence 58899999999999999999999988754221 111 13466777655
No 303
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.06 E-value=0.044 Score=59.40 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|+.|+|||||++.|+|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999963
No 304
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.04 E-value=0.042 Score=56.44 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++.+++|+|+.||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999997544
No 305
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.04 E-value=0.041 Score=59.56 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|||+.|+|||||+++|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 306
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.02 E-value=0.03 Score=60.10 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCcC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWI 745 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pwL 745 (950)
++-+++|.|++||||||+.+.|...+.. .| -++.+++++.+-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~-~~-----~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR-EG-----VKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH-HT-----CCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh-cC-----CCeeEeecchhh
Confidence 4568999999999999999998764431 11 136778877665
No 307
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.01 E-value=0.038 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
=.++|+|+.|+|||||++.+++.-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999999863
No 308
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.99 E-value=0.038 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.98 E-value=0.047 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+..+++|+|+.||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999997554
No 310
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.92 E-value=0.046 Score=57.45 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|++|+|||||++.|+|.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 311
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.82 E-value=0.04 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 312
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.82 E-value=0.048 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997654
No 313
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.77 E-value=0.042 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 314
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.77 E-value=0.044 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.74 E-value=0.056 Score=56.94 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++.++.|+|+.||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357799999999999999999997653
No 316
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.74 E-value=0.049 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
+.-.++|+|+.|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999985
No 317
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.67 E-value=0.051 Score=57.29 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|++|+|||||+++|+|.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 318
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.66 E-value=0.052 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|+.|||||||++.|.|.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 319
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.66 E-value=0.051 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 320
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.66 E-value=0.045 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 321
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.63 E-value=0.056 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
..+++|+|+.||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998653
No 322
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.027 Score=56.88 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=24.3
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..|+.|.-.+--.++|+|+.|+|||||++.+.+.-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 33444443334579999999999999999998753
No 323
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.049 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 324
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.54 E-value=0.048 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.350 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999975
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.54 E-value=0.053 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
+.+++|+|+.||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998653
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.53 E-value=0.057 Score=54.85 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 327
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.53 E-value=0.051 Score=53.05 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 328
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.52 E-value=0.054 Score=58.05 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|||+.|+|||||+++|+|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 329
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.52 E-value=0.048 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+.-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 330
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.51 E-value=0.059 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997654
No 331
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.51 E-value=0.062 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+.-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 332
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.50 E-value=0.032 Score=56.84 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|++|+|||||++.|+|.-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999874
No 333
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.48 E-value=0.05 Score=55.67 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++.+++|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997544
No 334
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.48 E-value=0.064 Score=57.55 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
..+++|+||+|||||||...|...+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999986653
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.48 E-value=0.049 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 336
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.45 E-value=0.064 Score=55.04 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|++|+|||||++.+++.-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 337
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.45 E-value=0.077 Score=51.84 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHc
Q psy16196 701 LVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLL 720 (950)
.++|+|+.|+|||||++.++
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 338
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.44 E-value=0.056 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHcC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.-.++|+|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999975
No 339
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.44 E-value=0.059 Score=53.84 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.43 E-value=0.056 Score=53.47 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.42 E-value=0.052 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999854
No 342
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.39 E-value=0.046 Score=56.16 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCccc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKI 726 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~ 726 (950)
++..+.|+||.|+|||||++++..++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999877643
No 343
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.38 E-value=0.074 Score=52.27 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++.-.++|+|+.|+|||||++.+.+.-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999999753
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.37 E-value=0.066 Score=55.78 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++-.++|+||.||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997544
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.35 E-value=0.05 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 346
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.35 E-value=0.061 Score=57.08 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++++|++|+|||||++.+.|.-
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999963
No 347
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.32 E-value=0.054 Score=54.38 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCccc
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKI 726 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~ 726 (950)
.-+.|.||+|+|||+|++++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999887644
No 348
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.30 E-value=0.061 Score=56.94 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|++|+|||||++.|+|.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
No 349
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.28 E-value=0.069 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 350
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.26 E-value=0.054 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 351
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.25 E-value=0.061 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
=.++|+|+.|+|||||++.+.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
No 352
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.21 E-value=0.061 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|++|||||||+++|.|.-
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 353
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.19 E-value=0.057 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 354
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.18 E-value=0.057 Score=53.35 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 355
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.13 E-value=0.056 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.11 E-value=0.059 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.+++|+|+.||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998653
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.10 E-value=0.068 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
+..+++|+|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.08 E-value=0.07 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996544
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.06 E-value=0.058 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
..++|+|+.||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998543
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.06 E-value=0.074 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 361
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.02 E-value=0.072 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.99 E-value=0.061 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 363
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.98 E-value=0.073 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 364
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.97 E-value=0.061 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 365
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.96 E-value=0.084 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.9
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHc
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLL 720 (950)
+++|+++.|.|++|+|||+|+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999987664
No 366
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.96 E-value=0.072 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 367
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.95 E-value=0.081 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.++|+|+.|+|||||++.+.+.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6999999999999999999997654
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.92 E-value=0.058 Score=53.59 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999863
No 369
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.91 E-value=0.071 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+++|+||+|||||||...|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999987653
No 370
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.88 E-value=0.036 Score=62.98 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=35.2
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEe
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i 732 (950)
+++.+ ..+-+|+.++|+|++|+|||||++.|.+......|.+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 34333 677799999999999999999999998877665666554
No 371
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.87 E-value=0.082 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999984
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.81 E-value=0.086 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-+++|+|++||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988553
No 373
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.81 E-value=0.078 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999997654
No 374
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.75 E-value=0.063 Score=58.17 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+++|+||+|||||||.+.|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 375
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.73 E-value=0.07 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.=.++|+|+.|+|||||++.+++.-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3478999999999999999998653
No 376
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.71 E-value=0.064 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.=.++|+|+.|+|||||++.+.+.-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3478999999999999999998754
No 377
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.71 E-value=0.084 Score=55.66 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
..+++||.+|+|||||++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 58999999999999999999998654433
No 378
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.68 E-value=0.069 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999743
No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.68 E-value=0.071 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 380
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.67 E-value=0.082 Score=55.62 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|+.|+|||||++.|.|.-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 381
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.66 E-value=0.056 Score=59.90 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=27.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
+++..+.|+||.|+|||||++.+.+++....|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999998876543
No 382
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.64 E-value=0.072 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
=.++|+|+.|+|||||++.+++.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999854
No 383
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.64 E-value=0.076 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.=.++|+|+.|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999854
No 384
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.58 E-value=0.074 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 385
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.58 E-value=0.084 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 386
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.57 E-value=0.068 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 387
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.56 E-value=0.07 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 388
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.068 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 389
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.091 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999953
No 390
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.54 E-value=0.09 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-+.++|+|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998543
No 391
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.51 E-value=0.094 Score=51.38 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+.+..+.|+||.|+|||||++.+..++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999887643
No 392
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.50 E-value=0.077 Score=60.03 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.5
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-++..++.|+|++||||||+.+.|...+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999998654
No 393
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.49 E-value=0.067 Score=57.63 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCee
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I 730 (950)
..-+.++||+|+||||++++|.+.+...+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45789999999999999999999887766543
No 394
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.49 E-value=0.093 Score=58.04 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.-.++|+|++|+|||||++.|.|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999975
No 395
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.076 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.48 E-value=0.082 Score=53.89 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|..++|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999996544
No 397
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.48 E-value=0.091 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 398
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.43 E-value=0.066 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++.+++|.|+.||||||+.+.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999998765
No 399
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.43 E-value=0.071 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|+.|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999875
No 400
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.42 E-value=0.088 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 401
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.42 E-value=0.063 Score=52.57 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=9.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 402
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.39 E-value=0.095 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 403
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.39 E-value=0.098 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999753
No 404
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.28 E-value=0.11 Score=57.62 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCe--EEEEEcCCCCChhHHHHHHcCCCcccC
Q psy16196 698 EGT--LVAIVGSVGAGKSSLVSALCGEMDKIS 727 (950)
Q Consensus 698 ~G~--lvaIVG~vGSGKSTLL~aLLGe~~~~~ 727 (950)
+|. .+.|+||.|+|||||++.+.+++.+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 445 899999999999999999999887653
No 405
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.26 E-value=0.076 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 406
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.23 E-value=0.098 Score=56.76 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=37.7
Q ss_pred CcccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 687 ~vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=|
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~slE 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHSLE 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEESS
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEECC
Confidence 457777766999999999999999999999888754322 22 356776644
No 407
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.21 E-value=0.072 Score=59.06 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|||++|+|||||+++|.|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999986
No 408
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.15 E-value=0.1 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|.+++|.|+.||||||+.+.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999997665
No 409
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.10 E-value=0.11 Score=56.42 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=25.3
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-+++|+++.|.||+|||||||+..+...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988754
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.08 E-value=0.12 Score=52.70 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+|.++++.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999976654
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.01 E-value=0.088 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+.+.-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 412
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.99 E-value=0.095 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.586 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+|.+++|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987664
No 413
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.96 E-value=0.085 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|++..++||.||||||++.-++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999985555433
No 414
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.96 E-value=0.061 Score=54.52 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
No 415
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.95 E-value=0.12 Score=55.97 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
++-.++++|+.|+|||||++.+++.+.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~ 28 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYS 28 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 456899999999999999999988743
No 416
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.89 E-value=0.13 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
++-.+++||.+|+|||||+++|.|.-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 345799999999999999999999754
No 417
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.87 E-value=0.092 Score=52.26 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++|+|+.|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 418
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.86 E-value=0.092 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999998754
No 419
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.84 E-value=0.11 Score=57.80 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..+++|+||+|||||||...|...+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3589999999999999999997554
No 420
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.83 E-value=0.13 Score=52.76 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.+|.++++.|+.||||||+.+.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36899999999999999999999876653
No 421
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.82 E-value=0.11 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998653
No 422
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.81 E-value=0.092 Score=57.94 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=35.7
Q ss_pred CcccceeEE---eeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 687 PTLQNINMR---VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 687 ~vL~~Inl~---i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
+.|+.+ +. +++|+++.|.|+.|||||||...++.+..... +++.|++-+
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g------~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG------KTCAFIDAE 100 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT------CCEEEEESS
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC------CeEEEEeCC
Confidence 345554 33 88999999999999999999998887654332 245566543
No 423
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.78 E-value=0.09 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 424
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.76 E-value=0.11 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
+.=.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999999965
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.73 E-value=0.11 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.70 E-value=0.095 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.62 E-value=0.13 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 428
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=0.13 Score=52.23 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.|+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.56 E-value=0.091 Score=56.26 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
++.-+.+.||+|+||||+++++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 466789999999999999999998763
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.50 E-value=0.083 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
=.++|+|+.|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.49 E-value=0.13 Score=53.24 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+|.+++|.|+.||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999776643
No 432
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.49 E-value=0.1 Score=57.65 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|||+.|+|||||+++|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
No 433
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.48 E-value=0.13 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996543
No 434
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.46 E-value=0.13 Score=52.48 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=25.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
++|.++++-|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999876654
No 435
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.34 E-value=0.11 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+|.++.+.|+.||||||++..++..+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4699999999999999998877765553
No 436
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.29 E-value=0.11 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.20 E-value=0.076 Score=57.76 Aligned_cols=29 Identities=38% Similarity=0.408 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCccc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKI 726 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~ 726 (950)
++.-+.|.||+|+|||||++++.+++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34578899999999999999999887654
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.19 E-value=0.12 Score=50.56 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.+..+.|+||.|+|||||++.+..++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999887654
No 439
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.14 E-value=0.15 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+|.++++.|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987665
No 440
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.11 E-value=0.071 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=4.9
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
=.++|+|+.|+|||||++.+++.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999876
No 441
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.08 E-value=0.12 Score=59.04 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=37.5
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
.|+++.--+++|+++.|.|++|+|||||+.-+........| ..+.|++=|
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYSLE 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEESS
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEECC
Confidence 46666645899999999999999999999988876543322 256666544
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.05 E-value=0.14 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996544
No 443
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.86 E-value=0.043 Score=57.84 Aligned_cols=34 Identities=35% Similarity=0.663 Sum_probs=27.0
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+.+.+...++| +.++||+|+|||+|++++.++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 44455556666 77999999999999999988653
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.83 E-value=0.11 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++.-+.|.||+|+|||||++++.+++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455669999999999999999998875
No 445
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.77 E-value=0.25 Score=48.16 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=25.8
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++..-+. -.|.=+.|.|++|+||||+...|+.
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 3688999999999999999998875
No 446
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=89.69 E-value=0.15 Score=61.51 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++-.++|+|++|+|||||+++|+|.-
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999999974
No 447
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.67 E-value=0.14 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.65 E-value=0.16 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHHcC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 449
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.65 E-value=0.13 Score=58.82 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|||++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999985
No 450
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.63 E-value=0.13 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.++|+|+.|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999754
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.63 E-value=0.16 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.462 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++...+.|+||.||||+|..+.|...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999887554
No 452
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.61 E-value=0.13 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHcC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLG 721 (950)
.=.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999988874
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.40 E-value=0.16 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|+.|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 454
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.39 E-value=0.1 Score=52.45 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=25.0
Q ss_pred eeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 696 i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|+...+.+.||.|+||||+..+|..++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6776779999999999999999998876
No 455
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.37 E-value=0.19 Score=54.21 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=26.1
Q ss_pred EEeeCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 694 MRVREGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 694 l~i~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
--+++|..+.|.||.|+|||||...+..+
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36889999999999999999999999764
No 456
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.30 E-value=0.073 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|+.|+|||||++.+++.-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 457
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=89.27 E-value=0.16 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|+.|+|||||++.|+|.-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999974
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.90 E-value=0.17 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+..++|+|+.||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999986644
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.83 E-value=0.17 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
=.++|+|+.|+|||||++.+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 460
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.82 E-value=0.13 Score=58.89 Aligned_cols=25 Identities=48% Similarity=0.578 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.|-.++|+|++|+|||||++.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3556999999999999999999985
No 461
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.78 E-value=0.14 Score=56.83 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
++..++++|++|+|||||+++|+|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999987
No 462
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.68 E-value=0.16 Score=56.17 Aligned_cols=43 Identities=26% Similarity=0.489 Sum_probs=33.4
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
-+++|+++.|.||.|||||||+..++...... .+.+.|++=+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCC
Confidence 36899999999999999999998887655332 24577777654
No 463
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.60 E-value=0.14 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+..-+.++||+|+|||++++++..++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999998865
No 464
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.52 E-value=0.13 Score=63.07 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=27.4
Q ss_pred EeeCCeEEEEEcCCCCChhHHHHHHcCCCcccC
Q psy16196 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727 (950)
Q Consensus 695 ~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~ 727 (950)
.+..|+.++|+||+||||||++..++++.....
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 356789999999999999999998887765544
No 465
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=88.52 E-value=0.14 Score=56.79 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++..++++|++|+|||||+++|+|..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57789999999999999999999873
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.47 E-value=0.19 Score=47.47 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G 728 (950)
.+.-+.|.||+|+|||++.++|..+.....+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 3445889999999999999999877654333
No 467
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.35 E-value=0.091 Score=59.58 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~p 743 (950)
...++|+|+.|+||||++..|.+.+..... ++.++.-+|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~------kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGL------KPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHC------CEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC------eEEEEeccc
Confidence 358999999999999999999998764322 455555554
No 468
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.33 E-value=0.18 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
=.++|+|+.|+|||||++.+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999853
No 469
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.26 E-value=0.21 Score=58.74 Aligned_cols=33 Identities=39% Similarity=0.510 Sum_probs=26.7
Q ss_pred cccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 688 vL~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.|++++ ++--.++|+|++|+|||||++.|+|.-
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 466543 344678999999999999999999974
No 470
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.15 E-value=0.14 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhHHHHHHc
Q psy16196 701 LVAIVGSVGAGKSSLVSALC 720 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLL 720 (950)
.++|+|+.|+|||||++.++
T Consensus 17 ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999943
No 471
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=88.02 E-value=0.18 Score=57.99 Aligned_cols=25 Identities=44% Similarity=0.688 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.|=.++|+|++|+|||||++.|+|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446999999999999999999997
No 472
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.59 E-value=0.1 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
.=.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999998754
No 473
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.67 E-value=0.27 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.+.|+||.|+|||||++.+..++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999887654
No 474
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.59 E-value=0.23 Score=54.83 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+.-.++|+|+.|+|||||++.|.+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987653
No 475
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.52 E-value=0.26 Score=56.01 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
-.++|+|++|+|||||++.++|+-
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999974
No 476
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=87.49 E-value=0.27 Score=53.94 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=28.8
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCC
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
-+.+.++++---.++|||.+++|||||++.|.+.
T Consensus 148 ~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 148 ERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 4567777776667999999999999999999875
No 477
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.47 E-value=0.3 Score=48.75 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+|++..++||.||||||.+.-++..+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999998877766553
No 478
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.23 E-value=0.32 Score=49.05 Aligned_cols=56 Identities=11% Similarity=0.258 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCc--CCCccHHHHHhcCCCCCh
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW--IQNATLRDNIVFGKTHVP 762 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pw--L~ngTIreNIlfg~~~d~ 762 (950)
|.+++|=|+-||||||+++.|...+. +|. . .+...+|- -...-||+-++-+.+.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~--~~~-----~-v~~~~eP~~t~~g~~ir~~l~~~~~~~~ 59 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV--KDY-----D-VIMTREPGGVPTGEEIRKIVLEGNDMDI 59 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT--TTS-----C-EEEEESSTTCHHHHHHHHHHHSSCCCCH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--CCC-----C-EEEeeCCCCChHHHHHHHHHhcccCCCH
Confidence 67899999999999999998876553 231 1 12333442 112236666666666554
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.91 E-value=0.22 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+++.-+.+.||.|+|||+|++++..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999886
No 480
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=86.64 E-value=0.3 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|||+.|+|||||+++|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 481
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.64 E-value=0.25 Score=46.60 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+.-+.|.||+|+|||++.++|..+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34588999999999999999988754
No 482
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.50 E-value=0.29 Score=55.35 Aligned_cols=41 Identities=29% Similarity=0.545 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEeccCc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~pw 744 (950)
++..++++|+.|+||||++..|...+.. .| .+++++.-|++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G-----~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK-RG-----YKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH-CC-----CeEEEEeCCCc
Confidence 5689999999999999999999977754 33 24555655554
No 483
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=86.43 E-value=0.28 Score=55.71 Aligned_cols=23 Identities=43% Similarity=0.705 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|||+.|+|||||++.|.|.-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
No 484
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=86.32 E-value=0.32 Score=54.59 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++++|++|+|||||+++|.|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999864
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.27 E-value=0.16 Score=55.67 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=29.2
Q ss_pred CcccceeEEeeCC--eEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 687 PTLQNINMRVREG--TLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 687 ~vL~~Inl~i~~G--~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+++.+.-.+..| ..+.+.||.|+||||+++++.+++.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555555555 3489999999999999999998865
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.25 E-value=0.27 Score=54.22 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
.+|.-+.+.||+|+|||++++++..++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999988754
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.98 E-value=0.21 Score=56.93 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
+.-+.|.||+|+|||||+++|.+++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999988744
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.97 E-value=0.22 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
..+.+.||.|+|||+|.++|..++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999876
No 489
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.90 E-value=0.34 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
.+.|+||.|+|||+|++.+..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999987753
No 490
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=85.79 E-value=0.46 Score=51.68 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
++|.++.|=|+.||||||+++.|...+..
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999887754
No 491
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.77 E-value=0.24 Score=53.22 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
++.-+.++||+|+|||++++++..++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999999988877643
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.69 E-value=0.4 Score=51.75 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 699 GTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 699 G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
+.-+.+.||+|+|||+|+.+|..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998775
No 493
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.31 E-value=0.4 Score=48.47 Aligned_cols=21 Identities=19% Similarity=0.635 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHcC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCG 721 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLG 721 (950)
-++++|..||||||..+.+..
T Consensus 11 ~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998753
No 494
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.21 E-value=0.42 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
++..-+.++||+|+|||+|++++..+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455678999999999999999998763
No 495
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.02 E-value=0.12 Score=63.67 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=30.1
Q ss_pred ceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCc
Q psy16196 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724 (950)
Q Consensus 691 ~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~ 724 (950)
..++.+++|+.+.++||+|+|||||+++|.+++.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 3466788999999999999999999999999874
No 496
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=84.79 E-value=0.45 Score=53.57 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHcCCC
Q psy16196 701 LVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 701 lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999864
No 497
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.72 E-value=0.43 Score=54.27 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=34.9
Q ss_pred ccceeEEeeCCeEEEEEcCCCCChhHHHHHHcCCCcccCCeeEeCCeEEEEecc
Q psy16196 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ 742 (950)
Q Consensus 689 L~~Inl~i~~G~lvaIVG~vGSGKSTLL~aLLGe~~~~~G~I~i~g~Iayv~Q~ 742 (950)
|+.+.--+++|+++.|.|++|+|||||+.-++...-.. | .++.|++=|
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-----~~vl~fSlE 234 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-----DVVNLHSLE 234 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-----CEEEEECSS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-----CEEEEEECC
Confidence 54444347899999999999999999988887654322 2 357776644
No 498
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=84.61 E-value=0.35 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHcCC
Q psy16196 700 TLVAIVGSVGAGKSSLVSALCGE 722 (950)
Q Consensus 700 ~lvaIVG~vGSGKSTLL~aLLGe 722 (950)
..|+|+|+..+||||||+.|+|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 58999999999999999999975
No 499
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.56 E-value=0.35 Score=53.45 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHcCCCcc
Q psy16196 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725 (950)
Q Consensus 697 ~~G~lvaIVG~vGSGKSTLL~aLLGe~~~ 725 (950)
..+..+.|+||.|+|||||++.+..++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988744
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=84.39 E-value=0.49 Score=55.85 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHcCCC
Q psy16196 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723 (950)
Q Consensus 698 ~G~lvaIVG~vGSGKSTLL~aLLGe~ 723 (950)
+|.++.++|.+||||||+.++|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999997654
Done!