RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16196
(950 letters)
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 568 bits (1464), Expect = 0.0
Identities = 262/550 (47%), Positives = 368/550 (66%), Gaps = 10/550 (1%)
Query: 4 LVLLIISLSDTIY---GLFIGEGYA-VTYTSPAIKFVTFLLLGALILLNRTRGLRTSGCI 59
+L I+ +D Y G A V SP + +T LL LI L R +G+++SG +
Sbjct: 73 FLLWIVCWADLFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIM 132
Query: 60 FLFVSLLALCGAPQYRTELTASLTRGFTID-YSFVSYMVYYPCVISLLILNFFADAAPTF 118
F + +C R+++ +L +D + ++ +Y+ V+S L+L+ F+D +P F
Sbjct: 133 LTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLSQLVLSCFSDKSPLF 192
Query: 119 SEYPVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSKEIVPLFD 178
SE NP PE ASF S++ F W MA GYR+PLE DLW+LN EDTS+ +VP+
Sbjct: 193 SETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLV 252
Query: 179 KHWNESLRKAARSQ-QTTPGTQ-AAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGA 236
++W + +K + G + + K SS +D AN S P + S+
Sbjct: 253 ENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLD--ANEEVEALIVKSPHKPRKPSLFKV 310
Query: 237 LCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVV 296
L KTFGP FL K I DL+ F+ PQILS LI FVN+P AP W+GYFY LL V + +
Sbjct: 311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACL 370
Query: 297 QTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQR-MD 355
QTL+L YF F GMR+++A++ +YRKAL I+N+ARK +TVGEIVNLMSVDAQR MD
Sbjct: 371 QTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMD 430
Query: 356 ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMK 415
+ Y+NM+WSAPLQ+ LALYFLW LGPSVLAG+AVMV+++P+N +A + + Q+ MK
Sbjct: 431 LATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMK 490
Query: 416 SKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCA 475
SKD R+KLMNE+L+GIKVLKLYAWEL+F +++ IR +E+KVLK++AYL+A +F W C
Sbjct: 491 SKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT 550
Query: 476 PFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRI 535
PFLV+L++FAVY+ D++++LDA+ AFVSL+LFNILRFPL++LPM+IS +VQASVS+KR+
Sbjct: 551 PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRL 610
Query: 536 NSFMNQEDLD 545
F++ E+L+
Sbjct: 611 RIFLSHEELE 620
Score = 196 bits (500), Expect = 2e-51
Identities = 84/140 (60%), Positives = 104/140 (74%), Gaps = 7/140 (5%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ + N TFTW R+ PPTL I + EG LVA+VG VG GKSSL+SAL EMD
Sbjct: 637 ITVHNATFTWARD-------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD 689
Query: 725 KISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAG 784
K+ G V+ KGS+A+VPQQAWIQN +LR+NI+FGK + Y +V++ACAL PD E+LP+G
Sbjct: 690 KVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749
Query: 785 DSTEIGEKGINLSGGQKQRV 804
D TEIGEKG+NLSGGQKQRV
Sbjct: 750 DRTEIGEKGVNLSGGQKQRV 769
Score = 125 bits (314), Expect = 7e-29
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 800 QKQRVKWQVYLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDV 859
Q +V+ VY Y+K+IGL ++ +I L + A+ SN WLS+W++D +VNGTQ+
Sbjct: 946 QTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDD--PMVNGTQN- 1002
Query: 860 GKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQ 919
L L VYGALG+ Q +V S+ V+ G + AS VLH+ LL + + FF+ TP
Sbjct: 1003 -NTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPS 1061
Query: 920 GRIISRFSKDVDILDNAIPFCIKSWLLCLF 949
G +++RFSK++D +D+ IP IK ++ LF
Sbjct: 1062 GNLVNRFSKELDTVDSMIPPVIKMFMGSLF 1091
Score = 68.0 bits (166), Expect = 2e-11
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 599 VAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVY 658
V+ G I+A+R LH +L N L S MSFF+ TP G +++R K++DTVD+++P ++ +
Sbjct: 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088
Query: 659 SSFT 662
S F
Sbjct: 1089 SLFN 1092
Score = 43.4 bits (102), Expect = 7e-04
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-------------NTKGS 735
L++IN+ + G V IVG GAGKSSL L + G + + +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795
I +PQ + + +LR N+ + ++ L LP E E G N
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 796 LSGGQKQRV 804
LS GQ+Q V
Sbjct: 1422 LSVGQRQLV 1430
Score = 31.5 bits (71), Expect = 3.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 552 YSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDP 589
+ ++ +Y+ V+S L+L+ F+D +P FSE +P
Sbjct: 164 FRDTTFYIYFALVLSQLVLSCFSDKSPLFSETNHDPNP 201
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 301 bits (772), Expect = 2e-85
Identities = 180/621 (28%), Positives = 293/621 (47%), Gaps = 72/621 (11%)
Query: 210 DIAANGSTRPPQDTSKKPPAQASIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWL 269
+ PP P + S++ L + KL+ D+ T P +L +
Sbjct: 217 TGSVVRPGPPP------TPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYF 270
Query: 270 IEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALT 329
++F++ NA +G + L +T ++Q++ L ++ R G++ RSAL + I+ K T
Sbjct: 271 VKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFT 330
Query: 330 ISNN--ARKETTVGEIVNLMSVDAQRMD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVL 386
IS+ A+ + G I+N+MS D +R++ Y LWS+P+ + L++ L ++G L
Sbjct: 331 ISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCAL 390
Query: 387 AGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQ 446
+AV+++ +P+NG + + K K+ DARVK NE SGI++ K AWE F
Sbjct: 391 MAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVAN 450
Query: 447 ILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLS 506
I R++E++ L++ ATSF+ + P L+ V F VY L H L ++ F +++
Sbjct: 451 IEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLL--GHELTPEVVFPTIA 508
Query: 507 LFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVIS 566
L +LR P M+P + + ++Q VS+KRI++F+ ++ S V M Y
Sbjct: 509 LLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATC------STVQDMEEY----- 557
Query: 567 LLILNFFADAAPTFSEYPVTEDPLVIENVCV---VVAKGTIRAARRLHLMVLTNILHSCM 623
+ V+ENV V V K RA +
Sbjct: 558 ---------WREQREHSTACQLAAVLENVDVTAFVPVK-LPRAPKVK------------- 594
Query: 624 SFFDTTPLGRILS--RCGKDVDTVDNILPNLLLTGV-YSSFTDPL--VIENGTFTW--ER 676
T+ L R L C + T + P++++ Y S + ++E GT
Sbjct: 595 ----TSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEAT 650
Query: 677 NTEGEGAESPPT-------------LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
T A++P L+++++ V G L ++G+ G+GKS+L+ +L +
Sbjct: 651 PTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF 710
Query: 724 DKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPA 783
+ GRV + SIA+VPQQAWI NAT+R NI+F R + L D L
Sbjct: 711 EISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGG 770
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
G TEIGEKG+NLSGGQK RV
Sbjct: 771 GLETEIGEKGVNLSGGQKARV 791
Score = 93.7 bits (233), Expect = 3e-19
Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 804 VKWQVYLHYLKSIGLPLSMAAILLNIAF-QGFAIGSNIWLSVWSEDKSTIVNGTQDVGKR 862
V W Y+ YL+ G + +L A + + S +WLS+WS +
Sbjct: 946 VPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSA-------- 997
Query: 863 DLYLGVY-GALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGR 921
YL VY G + LG L + E S +H LL V + FFDTTP GR
Sbjct: 998 ATYLYVYLGIVLLGTFSVPLRFFLSY-EAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGR 1056
Query: 922 IISRFSKDVDILDNAIPFCIKSWLLCLFG 950
I++RFS+D+DILDN +P L CLF
Sbjct: 1057 ILNRFSRDIDILDNTLPMSYLYLLQCLFS 1085
Score = 64.0 bits (156), Expect = 3e-10
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 605 RAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILP-----------NLL 653
R +R +H +L ++ MSFFDTTPLGRIL+R +D+D +DN LP ++
Sbjct: 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087
Query: 654 LTGVYSSFTDPLVI 667
+ + +S + P V+
Sbjct: 1088 SSILVTSASQPFVL 1101
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 277 bits (709), Expect = 2e-77
Identities = 148/420 (35%), Positives = 228/420 (54%), Gaps = 47/420 (11%)
Query: 118 FSEYPVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSKEIVPLF 177
+ E P E PE A+ S++ F W + LGY++PL KD+W L+ D ++ + F
Sbjct: 217 YEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSF 276
Query: 178 DKHWNESLRKAARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGAL 237
K W+E L+K KP ++ AL
Sbjct: 277 QKCWDEELKKP-------------------------------------KP----WLLRAL 295
Query: 238 CKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQ 297
+ G F G K+ DL FV P +L+ L+E + P W GY YA + V V+
Sbjct: 296 NNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQN-GEPAWIGYIYAFSIFVGVVLG 354
Query: 298 TLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMD-I 356
L + YF + RVG R+RS L++ ++RK+L +++ RK+ T G+I NLM+ DA+ + I
Sbjct: 355 VLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQI 414
Query: 357 TPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKS 416
L+ LWSAP +I +A+ L+ LG + L G ++V++ P+ ++ ++++ L + ++
Sbjct: 415 CQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQR 474
Query: 417 KDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAP 476
D R+ LMNEVL+ + +K YAWE SFQ ++ +R E+ ++A L+A SFI + P
Sbjct: 475 TDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP 534
Query: 477 FLVSLVSFAVY-LLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRI 535
LV++VSF V+ LL D L AF SLSLF +LRFPL MLP LI+Q V A+VS+KR+
Sbjct: 535 VLVTVVSFGVFTLLGGD---LTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRL 591
Score = 171 bits (434), Expect = 3e-43
Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 7/141 (4%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ I+NG F+W+ E PTL NIN+ V G+LVAIVGS G GK+SL+SA+ GE+
Sbjct: 615 ISIKNGYFSWDSKAE------RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP 668
Query: 725 KIS-GRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPA 783
S V +G++A+VPQ +WI NAT+RDNI+FG P RY + ID AL D ++LP
Sbjct: 669 PRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPG 728
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
GD TEIGE+G+N+SGGQKQRV
Sbjct: 729 GDLTEIGERGVNISGGQKQRV 749
Score = 77.9 bits (192), Expect = 2e-14
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 804 VKWQVYLHYLKSIG-LPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKR 862
V W+V Y ++G + M L + + F + S+ WLS W++ GT
Sbjct: 899 VSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTD------QGTPKTHGP 952
Query: 863 DLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRI 922
Y +Y L GQVL L +S + SL A+ LH+ +L + A + FF T P GRI
Sbjct: 953 LFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRI 1012
Query: 923 ISRFSKDV-DILDNAIPF 939
I+RF+KD+ DI N F
Sbjct: 1013 INRFAKDLGDIDRNVAVF 1030
Score = 51.7 bits (124), Expect = 2e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 603 TIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDN---ILPNLLLTGVYS 659
++ AA+RLH +L +IL + MSFF T PLGRI++R KD+ +D + N+ L ++
Sbjct: 981 SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQ 1040
Score = 36.6 bits (85), Expect = 0.077
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
E PP L ++ + V IVG GAGKSS+++AL
Sbjct: 1250 ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 228 bits (585), Expect = 2e-69
Identities = 83/140 (59%), Positives = 106/140 (75%), Gaps = 4/140 (2%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ +E+ +FTW+ E+ TL++IN+ V +G LVAIVG VG+GKSSL+SAL GE++
Sbjct: 1 ISVEDASFTWDSG----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56
Query: 725 KISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAG 784
K+SG V+ GSIA+V Q+ WIQN T+R+NI+FGK RY KVI ACAL PD E+LP G
Sbjct: 57 KLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDG 116
Query: 785 DSTEIGEKGINLSGGQKQRV 804
D TEIGEKGINLSGGQKQR+
Sbjct: 117 DLTEIGEKGINLSGGQKQRI 136
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 248 bits (635), Expect = 4e-68
Identities = 150/434 (34%), Positives = 231/434 (53%), Gaps = 50/434 (11%)
Query: 115 APTFSEY---PVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSK 171
+ EY EN PE AS S++ F+W + LGYRKP+ KD+W L+ D ++
Sbjct: 211 SLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTE 270
Query: 172 EIVPLFDKHWNESLRKAARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQA 231
++ F + W E S RP KP
Sbjct: 271 TLIKRFQRCWTEE-------------------------------SRRP------KP---- 289
Query: 232 SIVGALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLL 291
++ AL + G F G K+ DL FV P ILS L++ + E + P W GY YA L+
Sbjct: 290 WLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIF 348
Query: 292 VTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDA 351
L S YF + RVG R+RS L++ I+ K+L +++ ARK G++ N+++ DA
Sbjct: 349 FGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDA 408
Query: 352 QRMD-ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQ 410
+ I L+ LWSAP +I +++ L+ LG + L G ++ +LIP+ + ++R L
Sbjct: 409 NALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLT 468
Query: 411 IKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSF 470
+ ++ D RV ++NE+L+ + +K YAWE SF+ +I IR++E+ ++A L+A SF
Sbjct: 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSF 528
Query: 471 IWSCAPFLVSLVSFAVY-LLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQAS 529
I + P +V+LVSF V+ LL D L AF SLSLF +LR PL+MLP L+SQ+V A+
Sbjct: 529 ILNSIPVVVTLVSFGVFVLLGGD---LTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNAN 585
Query: 530 VSVKRINSFMNQED 543
VS++RI + E+
Sbjct: 586 VSLQRIEELLLSEE 599
Score = 150 bits (380), Expect = 7e-37
Identities = 69/139 (49%), Positives = 94/139 (67%), Gaps = 7/139 (5%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
I+NG F+W+ T PTL +IN+ + G+LVAIVG G GK+SL+SA+ GE+
Sbjct: 617 IKNGYFSWDSKTSK------PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670
Query: 727 -SGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGD 785
+ V +GS+A+VPQ +WI NAT+R+NI+FG RY + ID AL D ++LP D
Sbjct: 671 ETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 786 STEIGEKGINLSGGQKQRV 804
TEIGE+G+N+SGGQKQRV
Sbjct: 731 LTEIGERGVNISGGQKQRV 749
Score = 83.9 bits (207), Expect = 3e-16
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 11/154 (7%)
Query: 786 STEIGEKGINLSGGQKQR----VKWQVYLHYLKSIG-LPLSMAAILLNIAFQGFAIGSNI 840
ST+ G++G ++ Q++R + W V + Y K++G L + M ++ + + + S+
Sbjct: 874 STKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSST 933
Query: 841 WLSVWSEDKSTIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHE 900
WLS+W+ D+ST + + Y+ VY LG GQV T+S + SL A+ LH+
Sbjct: 934 WLSIWT-DQSTPKSYSPG-----FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHD 987
Query: 901 FLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILD 934
+L + A + FF T P GR+I+RFSKD+ +D
Sbjct: 988 AMLNSILRAPMLFFHTNPTGRVINRFSKDIGDID 1021
Score = 48.8 bits (116), Expect = 1e-05
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 603 TIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLL 653
++ AA+RLH +L +IL + M FF T P GR+++R KD+ +D + NL+
Sbjct: 978 SLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLM 1028
Score = 41.5 bits (97), Expect = 0.002
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
PP L ++ V V +VG GAGKSS+++AL ++ GR+
Sbjct: 1247 GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT 1306
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
++ +PQ + + T+R NI H + ++ + + P G E+
Sbjct: 1307 DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1366
Query: 791 EKGINLSGGQKQ 802
E G N S GQ+Q
Sbjct: 1367 EGGENFSVGQRQ 1378
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 145 bits (368), Expect = 1e-39
Identities = 67/157 (42%), Positives = 90/157 (57%), Gaps = 25/157 (15%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ + NG F+W TL NIN+R+ G L IVG VG GKSSL+ A+ GEM
Sbjct: 1 VQVTNGYFSWGSGL--------ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52
Query: 725 KISGRV-----------------NTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNK 767
+ G+V + S+A+ Q+ W+ NAT+ +NI FG +RY
Sbjct: 53 TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKA 112
Query: 768 VIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
V DAC+L PD ++LP GD TEIGE+GINLSGGQ+QR+
Sbjct: 113 VTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI 149
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 143 bits (363), Expect = 4e-38
Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 7/270 (2%)
Query: 251 LKLIQDLLTFVSPQILSWLIEFVNEPNAP-LWKGYFYAILLLVTSVVQTLLLSTYFDRMF 309
L ++ V P +L ++ + + N AILL+ V+Q LLL F
Sbjct: 7 LLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLGE 66
Query: 310 RVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRM-DITPYLNMLWSAPL 368
R+G R+R L + R+ L + + +VGE+ + ++ D ++ D L+ L
Sbjct: 67 RLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSL 126
Query: 369 QIGLALYFLWGILGPSV-LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEV 427
+ + + G + L LA++ +LI ++ +A ++R L K+ K+ + E
Sbjct: 127 ATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEES 186
Query: 428 LSGIKVLKLYAWELSFQEQILKIR-SKEIKVLKEAAYLNAATSFIWSCAPF-LVSLVSFA 485
LSGI+ +K + E E+ K E +K+A + + + F
Sbjct: 187 LSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFG 246
Query: 486 VYLLSDDSHVLDAQIAFVSLSLFNILRFPL 515
YL+ S L F LSL L PL
Sbjct: 247 AYLV--ISGGLSVGTVFAFLSLGLQLSGPL 274
Score = 48.8 bits (117), Expect = 6e-06
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 8/126 (6%)
Query: 822 MAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYLGVYG-ALGLGQVLSV 880
+ IL F + +L + + + L + A+G+ Q L +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERS-------SLISLAILLIAVGVLQGLLL 58
Query: 881 LTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFC 940
S L LL ++ + FFDT G + SR + DV + + +
Sbjct: 59 QGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDK 118
Query: 941 IKSWLL 946
+ +
Sbjct: 119 LGLFFQ 124
Score = 40.0 bits (94), Expect = 0.003
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 603 TIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFT 662
R +RL +L IL MSFFDT +G + SR DV + + L + L S T
Sbjct: 69 GQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLAT 128
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 124 bits (314), Expect = 1e-31
Identities = 49/118 (41%), Positives = 77/118 (65%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+++ +G ++AI GS G+GK+SL+ + GE++ G++ G I+F Q +WI
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+FG ++ RY V+ AC L D P D+T +GE GI LSGGQ+ R+
Sbjct: 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 128 bits (324), Expect = 4e-30
Identities = 102/419 (24%), Positives = 191/419 (45%), Gaps = 45/419 (10%)
Query: 128 SPEYRASFPSKLIFAWFDRMAWLGYRKPLENKDLWNLNHEDTSKEIVPLFDKHWNESLRK 187
SP +A+F SKL F W + GYR+ LE D++ + D++ + ++ W+ L
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA- 62
Query: 188 AARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKPPAQASIVGALCKTFGPTFLF 247
++KK P ++ AL + F F+F
Sbjct: 63 -----------------------------------SAKKNP---KLLNALRRCFFWRFVF 84
Query: 248 GSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWK-GYFYAILLLVTSVVQTLLLSTYFD 306
L + V P +L +I + NAP + Y+ A+ L + +V+TLLL
Sbjct: 85 YGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIF 144
Query: 307 RMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMDITPYL-NMLWS 365
+ +GM+MR AL S IY+K L +S+ + + G++V+L+S + + D L + +W
Sbjct: 145 GLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWI 204
Query: 366 APLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMN 425
APLQ+ L + +W +L + GL +++L + ++ + K+ R+ + +
Sbjct: 205 APLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITS 264
Query: 426 EVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFA 485
E++ I+ +K Y WE + ++ I IR E+K+ ++ AYL S + + F V +S
Sbjct: 265 EIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVV 324
Query: 486 VYLLSDDSHVLDAQIAFVSLSLFNILRFPLS-MLPMLISQLVQASVSVKRINSFMNQED 543
Y L + + F ++S +LR ++ P I + ++ +I F+ +E+
Sbjct: 325 PYAL---IKGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEE 380
Score = 119 bits (299), Expect = 4e-27
Identities = 52/118 (44%), Positives = 77/118 (65%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NI+ ++ +G L+A+ GS G+GKSSL+ + GE++ G++ G I+F PQ +WI
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIM 499
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T++DNI+FG ++ RY VI AC L D + P D T +GE GI LSGGQ+ R+
Sbjct: 500 PGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557
Score = 44.1 bits (104), Expect = 4e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 892 LLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAIPFCI 941
L S LHE +L V A + +T GRI++RF+KD+ I+D+ +P +
Sbjct: 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL 1003
Score = 43.0 bits (101), Expect = 0.001
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 604 IRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILP 650
+ ++RLH +L ++L + M+ +T GRIL+R KD+ +D++LP
Sbjct: 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLP 1000
Score = 42.2 bits (99), Expect = 0.002
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALC------GE--MDKISGRVNT----KGSI 736
LQ+++ V G V ++G G+GKS+L+SAL GE +D +S T + +
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294
Query: 737 AFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796
+PQ+ +I + T R N+ + KV + L E P + + G L
Sbjct: 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL 1354
Query: 797 SGGQKQ 802
S G KQ
Sbjct: 1355 SNGHKQ 1360
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 95.8 bits (239), Expect = 5e-22
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 25/156 (16%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ +N TF + + PP L++I++ + G VA+VG G+GKS+LV+ + D
Sbjct: 1 VEFKNVTFRYP-------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD 53
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771
SGR+ G I V Q ++ N T+ +NI +G+ R +V +A
Sbjct: 54 VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR--EEVEEA 111
Query: 772 C--ALTPDFEM-LPAGDSTEIGEKGINLSGGQKQRV 804
A +F M LP G T IGE+G+ LSGGQ+QR+
Sbjct: 112 ARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRI 147
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 99.0 bits (247), Expect = 2e-21
Identities = 55/301 (18%), Positives = 128/301 (42%), Gaps = 7/301 (2%)
Query: 245 FLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLSTY 304
L L L+ LL+ + P ++ +I+ + L + +LL + V L S
Sbjct: 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYL 75
Query: 305 FDRM-FRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMD--ITPYLN 361
R+ ++ +R L + K L + + + G++++ ++ D + + ++ L
Sbjct: 76 GSRLGQKIVADLRRDL----FEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
Query: 362 MLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARV 421
+++++ L + +L L+ + L L ++ +L V +A + R L + ++
Sbjct: 132 LVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELN 191
Query: 422 KLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSL 481
+ E LSGI+V+K + E ++ + + + A+ L A + + L ++
Sbjct: 192 ARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTV 251
Query: 482 VSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQ 541
+ A+ S L + L P+ L ++S L +AS + +R+ +++
Sbjct: 252 LVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE 311
Query: 542 E 542
E
Sbjct: 312 E 312
Score = 88.6 bits (220), Expect = 4e-18
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
P L++I+ + G VAIVG G+GKS+L+ L D SG + G
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALT---PDFEMLPAGDST 787
I V Q + + T+R+NI G+ ++ +A L LP G T
Sbjct: 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE--EIEEALKLANAHEFIANLPDGYDT 457
Query: 788 EIGEKGINLSGGQKQRV 804
+GE+G+NLSGGQ+QR+
Sbjct: 458 IVGERGVNLSGGQRQRL 474
Score = 38.6 bits (90), Expect = 0.017
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 806 WQVYLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVN-GTQDVGKRDL 864
+ LK + L + AILL + ++ + + I++ D+G+
Sbjct: 1 LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGR-------IIDALLADLGELLE 53
Query: 865 YLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIIS 924
L + L L + S + + L L ++ + FFD G +IS
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 925 RFSKDVDILDNAI 937
R + DV+ + N +
Sbjct: 114 RLTNDVEAVSNLV 126
Score = 33.2 bits (76), Expect = 0.71
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 597 VVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNIL---PNLL 653
+ ++ + L + +L +SFFD G ++SR DV+ V N++ L+
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 654 LTGVYSSFT 662
T +
Sbjct: 134 FTSILLLIG 142
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 88.0 bits (219), Expect = 2e-19
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
P L+ +++ + G VA+VGS G GKS++VS L D SG + G
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76
Query: 736 --IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
I V Q+ + + T+ +NI +GK +V +A A DF LP G T +G
Sbjct: 77 SQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKANIHDFIMSLPDGYDTLVG 134
Query: 791 EKGINLSGGQKQRV 804
E+G LSGGQKQR+
Sbjct: 135 ERGSQLSGGQKQRI 148
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 92.3 bits (230), Expect = 5e-19
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734
G + PP L+++++ + G VAIVG G+GKS+L+ L G GR+ G
Sbjct: 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALT---PDFEMLPAGD 785
+ +V Q ++ + ++R+NI G ++I+A L E LP G
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT--DEEIIEAAQLAGAHEFIENLPMGY 599
Query: 786 STEIGEKGINLSGGQKQRV 804
T +GE G NLSGGQ+QR+
Sbjct: 600 DTPVGEGGANLSGGQRQRL 618
Score = 57.6 bits (140), Expect = 2e-08
Identities = 60/294 (20%), Positives = 125/294 (42%), Gaps = 16/294 (5%)
Query: 257 LLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLL--LSTYFDRMFRVGMR 314
LL +P +I+ V + AI LL+ ++ + LL L TY + +G R
Sbjct: 168 LLALATPLFSQIVIDKVLPDASRSTLTVL-AIGLLLAALFEALLRLLRTY--LIAHLGKR 224
Query: 315 MRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMDITPYL-NMLWSAPLQIGLA 373
+ L +R L + + ++ +VGEI++ + + ++ I +L + + + + A
Sbjct: 225 LDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQ--IREFLTGSILTLIIDLLFA 281
Query: 374 LYF---LWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSG 430
L F ++ L LA + + + + +R K ++ + + E + G
Sbjct: 282 LIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKG 341
Query: 431 IKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAP--FLVSLVSFAVYL 488
I+ +K A E F+ Q +K++ + + L + I S V ++ F L
Sbjct: 342 IETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL 401
Query: 489 LSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQE 542
+ + L +AF L+ + I P++ L L + QA V+++R+ ++
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFIS--PITRLSQLWTDFQQAKVALERLGDILDTP 453
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 85.7 bits (213), Expect = 9e-19
Identities = 47/134 (35%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P L N+++ +R G VAI+G VG+GKS+L+ L G SG V G
Sbjct: 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVP-RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
+I +VPQ + TLRDNI G R + + +T P G +IGE+
Sbjct: 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGER 137
Query: 793 GINLSGGQKQRVKW 806
G LSGGQ+Q V
Sbjct: 138 GRGLSGGQRQAVAL 151
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 90.4 bits (225), Expect = 1e-18
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 22/155 (14%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
L + + P L+ ++ V G VA+VG GAGKS+L++ L G +
Sbjct: 321 SLEFSGVSVAYP--------GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372
Query: 724 DKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPR-RYNKVI 769
D G + G IA+VPQ ++ T+ +NI + + +
Sbjct: 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREAL 432
Query: 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ L LP G T IGE G LSGGQ QR+
Sbjct: 433 ERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRL 467
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 88.9 bits (221), Expect = 3e-18
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
+ P L ++N+ ++ G L A+VG+ GAGKS+L++ L G + G + G
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE 391
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPR-RYNKVIDACALTPDFEMLPAGDSTEI 789
I++V Q ++ T+R+NI+ + +D L +F P G T I
Sbjct: 392 AWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL-EFVPKPDGLDTVI 450
Query: 790 GEKGINLSGGQKQRV 804
GE G LSGGQ QR+
Sbjct: 451 GEGGAGLSGGQAQRL 465
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 83.7 bits (207), Expect = 6e-18
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734
+ P L NI++R++ G +V IVG G+GKS+L + +GRV G
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD 70
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTP--DFEM-LPAGD 785
+ V Q+ + N ++RDNI + +VI+A L DF LP G
Sbjct: 71 PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME--RVIEAAKLAGAHDFISELPEGY 128
Query: 786 STEIGEKGINLSGGQKQRV 804
T +GE+G LSGGQ+QR+
Sbjct: 129 DTIVGEQGAGLSGGQRQRI 147
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 82.3 bits (204), Expect = 2e-17
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 676 RNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG- 734
N E P L++IN ++ G VAIVG GAGK++L++ L D G++ G
Sbjct: 6 ENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65
Query: 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALT--PDFEM 780
I V Q ++ + T+ +NI G+ + +VI+A DF M
Sbjct: 66 DIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGAHDFIM 123
Query: 781 -LPAGDSTEIGEKGINLSGGQKQRV 804
LP G T +GE G NLS G++Q +
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLL 148
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 79.0 bits (196), Expect = 6e-17
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 61/153 (39%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ +N +F++ P L+++++ ++ G VAIVG G+GKS+L+ L D
Sbjct: 1 IEFKNVSFSY-------PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771
SG + G +IA+VPQ ++ + T+R+NI
Sbjct: 54 PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------- 96
Query: 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
LSGGQ+QR+
Sbjct: 97 ------------------------LSGGQRQRI 105
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 83.2 bits (206), Expect = 2e-16
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P L +N+ VR G VA+VG GAGKS+L L D SGR+ G
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
+A VPQ + A++ +NI +G+ +V A A +F LP G T +G
Sbjct: 414 ARMALVPQDPVLFAASVMENIRYGRPDATDE--EVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 791 EKGINLSGGQKQRV 804
E+G+ LSGGQ+QR+
Sbjct: 472 ERGVTLSGGQRQRI 485
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 82.6 bits (205), Expect = 4e-16
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
+ P L N+++ +R G VAI+G +G+GKS+L+ L G G V G
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVP-RRYNKVIDACALTPDF-EMLPAGDSTE 788
+I +VPQ + TLRDNI G + + + +T +F P G +
Sbjct: 536 DLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVT-EFVRRHPDGLDMQ 594
Query: 789 IGEKGINLSGGQKQRV 804
IGE+G +LSGGQ+Q V
Sbjct: 595 IGERGRSLSGGQRQAV 610
Score = 42.5 bits (101), Expect = 0.001
Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 22/233 (9%)
Query: 321 STIYRKALTISNNARKETTVGEIVNLMSVDAQRMDITPYLNMLWSAPLQ--IGL--ALYF 376
+ ++ + L + AR + L ++ R T SA L I L AL F
Sbjct: 224 AKLFERVLGLRMEARPASVGSFANQLREFESVRDFFT-------SATLTALIDLPFALLF 276
Query: 377 L---WGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKV 433
L I GP V L + +++ + + L + M+ R ++ E LSG++
Sbjct: 277 LLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLET 336
Query: 434 LKLYAWELSFQ---EQILKIRSK-EIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLL 489
+K E FQ EQ + ++ +K + FI V++V VYL+
Sbjct: 337 IKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVS--VAIVVVGVYLI 394
Query: 490 SDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQE 542
SD + IA V LS + PL L L+++ QA +++ ++ M
Sbjct: 395 SDGELTMGGLIACVMLSGRALA--PLGQLAGLLTRYQQAKTALQSLDELMQLP 445
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 78.4 bits (194), Expect = 4e-16
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P L++++ + G VAIVG G+GKS+++ L D SG + G
Sbjct: 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLR 74
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDFEM-LPAGDSTEIG 790
+I VPQ + N T+ NI +G+ +VI+A A D M P G T +G
Sbjct: 75 RAIGVVPQDTVLFNDTIGYNIRYGRPDATD--EEVIEAAKAAQIHDKIMRFPDGYDTIVG 132
Query: 791 EKGINLSGGQKQRV 804
E+G+ LSGG+KQRV
Sbjct: 133 ERGLKLSGGEKQRV 146
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 75.6 bits (187), Expect = 2e-15
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR-----VNTKG---- 734
PP L+NI+ ++ G V IVG G+GKSSL+ AL ++ SG V+
Sbjct: 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLH 74
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
I+ +PQ + + T+R N+ + + ++ L E LP G T +
Sbjct: 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVE 134
Query: 791 EKGINLSGGQKQ 802
E G NLS GQ+Q
Sbjct: 135 EGGENLSVGQRQ 146
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 79.3 bits (196), Expect = 4e-15
Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728
G + E T PTL+ I+ ++ G +AI+G G+GKS+L + G SG
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 729 RVNTKG-------------SIAFVPQQAWIQNATLRDNIV-FGKTHVPRRYNKVIDACAL 774
V G I ++PQ + T+ +NI FG+ P K+I+A L
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE---KIIEAAKL 430
Query: 775 TPDFEM---LPAGDSTEIGEKGINLSGGQKQRV 804
E+ LP G T IG G LSGGQ+QR+
Sbjct: 431 AGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 78.9 bits (195), Expect = 4e-15
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L + N +FT+ L+N N+ + +G VAI+G G+GKS+L+ L G D
Sbjct: 337 LELRNVSFTYPGQ-------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGK-THVPRRYNKVID 770
G + G +I+ + Q+ + + TLRDN+ +
Sbjct: 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQ 449
Query: 771 ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803
L E P G +T +GE G LSGG+++R
Sbjct: 450 QVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482
Score = 40.8 bits (96), Expect = 0.003
Identities = 48/275 (17%), Positives = 99/275 (36%), Gaps = 23/275 (8%)
Query: 283 GYFYAILLLVTSVVQTLLLST---YFDRM------FRVGMRMRSALISTIYRKALTISNN 333
Y + ++L V +L T Y +R+ FRV +R L + + +
Sbjct: 52 AYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR 111
Query: 334 ARKETTVGEIVNLMSVDAQRMDITPYLNML--WSAPLQIGLALYFLWGILGP----SVLA 387
R G+++N + D +D YL ++ L + + +
Sbjct: 112 YRS----GDLLNRLVADVDALD-NLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166
Query: 388 GLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQI 447
L +++++IP Y A R + Q ++ R + + + G L ++ E +++ +
Sbjct: 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAA-LRSQFT-DWVQGQAELLIFGAEDAYRTAL 224
Query: 448 LK-IRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLS 506
S K+A + + + + A LV + + + A L
Sbjct: 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLV 284
Query: 507 LFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQ 541
+F L + P L Q S +R+N ++Q
Sbjct: 285 IFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 72.9 bits (180), Expect = 2e-14
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 40/161 (24%)
Query: 666 VIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725
++N +F++ P L +I++ +++G V IVG G+GKS+L+ L G +
Sbjct: 1 ELKNLSFSYPDGAR-------PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP 53
Query: 726 ISGRVNTKG-------------SIAFVPQQAWIQ--NATLRDNIVFG-------KTHVPR 763
SG V G + V Q Q T+ + + FG + +
Sbjct: 54 TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE 113
Query: 764 RYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
R + ++ L + P LSGGQKQRV
Sbjct: 114 RVEEALELVGLEGLRDRSPF-----------TLSGGQKQRV 143
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 72.2 bits (178), Expect = 3e-14
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 21/134 (15%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SIAF 738
P L++++ V+ G +AIVG GAGKS+L+ A+ G + SG + G I +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 739 VPQQA---WIQNATLRDNIV----FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGE 791
VPQ+ ++RD +V +G + RR +K A E L +E+ +
Sbjct: 73 VPQRRSIDRDFPISVRD-VVLMGLYGHKGLFRRLSKADKAKVD----EALERVGLSELAD 127
Query: 792 KGI-NLSGGQKQRV 804
+ I LSGGQ+QRV
Sbjct: 128 RQIGELSGGQQQRV 141
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 75.9 bits (187), Expect = 4e-14
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--------- 735
+PP L +++ + G VAI+G G+GKS+L++ L G +D + G V G
Sbjct: 347 APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDE 406
Query: 736 ----IAFVPQQAWIQNATLRDNIVFGKTHVP-RRYNKVIDACALTPDFEMLPAGDSTEIG 790
++ Q A + + T+R+N+ + ++ L LP G T +G
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLG 466
Query: 791 EKGINLSGGQKQRV 804
E G LSGG++QR+
Sbjct: 467 EGGARLSGGERQRL 480
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 75.9 bits (187), Expect = 5e-14
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-------------NTK 733
P L +I++ + G VA+VG G+GKS+LV+ + + SG++ + +
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 734 GSIAFVPQQAWIQNATLRDNIVFGKT-HVPR-RYNKVIDACALTPDFEMLPAGDSTEIGE 791
+A V Q + N T+ +NI +G+T R + + A + LP G T IGE
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 792 KGINLSGGQKQRV 804
G+ LSGGQ+QR+
Sbjct: 466 NGVLLSGGQRQRL 478
Score = 33.2 bits (76), Expect = 0.86
Identities = 38/256 (14%), Positives = 101/256 (39%), Gaps = 17/256 (6%)
Query: 301 LSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMDITPYL 360
+STY + V ++ + ++ K L + + G +++ ++ D+++ +
Sbjct: 73 VSTYL--LSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQ--VASAA 128
Query: 361 NMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNG----YVATRIRNLQIKQMKS 416
+ ++ L + L+ +L ++V+++PV V+ R+R + + S
Sbjct: 129 TDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNS 188
Query: 417 KDARVKLMNEVLSGIKVLKLYAWELSFQEQILKI----RSKEIKVLKEAAYLNAATSFIW 472
+ E L G +V+KL+ + + + R +K+ + + T I
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248
Query: 473 SCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSV 532
S A +++V F + + ++ ++R PL L + + + + +
Sbjct: 249 SLA---LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR-PLKSLTNVNAPMQRGLAAA 304
Query: 533 KRINSFMNQED-LDRG 547
+ + + ++ D G
Sbjct: 305 ESLFTLLDSPPEKDTG 320
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 75.2 bits (185), Expect = 1e-13
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 669 NGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS----------- 717
G T+E +SP L N+N+ ++ G + IVG G+GKS+L
Sbjct: 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512
Query: 718 -ALCGEMD-KISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACAL- 774
L +D I+ + + V Q+ + + ++RDNI P + VI A L
Sbjct: 513 QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAP--FEHVIHAAKLA 570
Query: 775 -TPDF-EMLPAGDSTEIGEKGINLSGGQKQRV 804
DF LP G +TE+GEKG NLSGGQ+QR+
Sbjct: 571 GAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 73.9 bits (182), Expect = 2e-13
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P L+ I+ ++ G + I+G G+GKS+L L G SG V G
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 735 -SIAFVPQQAWIQNATLRDNIV-FGKTHVPRRYNKVIDACALTPDFEM---LPAGDSTEI 789
I ++PQ + + T+ +NI FG+ P KVI+A L E+ LP G T I
Sbjct: 410 RHIGYLPQDVELFDGTIAENIARFGEEADPE---KVIEAARLAGVHELILRLPQGYDTRI 466
Query: 790 GEKGINLSGGQKQRV 804
GE G LSGGQ+QR+
Sbjct: 467 GEGGATLSGGQRQRI 481
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 68.7 bits (168), Expect = 8e-13
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
LQ+++ + G + A+VG G+GKS++V+ L G+V G
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87
Query: 736 --IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDFEM-LPAGDSTEIG 790
++ V Q+ + +L+DNI +G + V +A A F L +G TE+G
Sbjct: 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCS--FECVKEAAQKAHAHSFISELASGYDTEVG 145
Query: 791 EKGINLSGGQKQRV 804
EKG LSGGQKQRV
Sbjct: 146 EKGSQLSGGQKQRV 159
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 68.8 bits (169), Expect = 1e-12
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 23/136 (16%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------SI 736
P L++I++ V +G + A++G GAGKS+L+ A+ G + SG + G I
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77
Query: 737 AFVPQQA---WIQNATLRDNIV----FGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
+VPQ++ T++D +V +GK RR NK E L ++
Sbjct: 78 GYVPQKSSVDRSFPITVKD-VVLLGRYGKKGWFRRLNKKDKEKV----DEALERVGMEDL 132
Query: 790 GEKGI-NLSGGQKQRV 804
++ I LSGGQKQRV
Sbjct: 133 RDRQIGELSGGQKQRV 148
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 70.8 bits (174), Expect = 2e-12
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 24/156 (15%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ N TFT+ G E P L+NIN ++ G VA+VG G+GKS++ + L D
Sbjct: 342 IEFRNVTFTYP------GKEVP-ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD 394
Query: 725 KISGRV-------------NTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771
G + + + +A V Q + N T+ +NI + +T R ++ +A
Sbjct: 395 IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSRE-QIEEA 453
Query: 772 C--ALTPDF-EMLPAGDSTEIGEKGINLSGGQKQRV 804
A DF + G T IGE G+ LSGGQ+QR+
Sbjct: 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 69.0 bits (169), Expect = 8e-12
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 19/135 (14%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-------------RVNTK 733
L +I++ ++ + IVG G+GKS+L L G SG R +
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547
Query: 734 GSIAFVPQQAWIQNATLRDNIVFG-KTHVPRRYNKVIDACALTP---DFEMLPAGDSTEI 789
I ++PQ+ +I + ++ +N++ G K +V + +++ AC + D E +P G TE+
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAKENVSQ--DEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 790 GEKGINLSGGQKQRV 804
E+G ++SGGQKQR+
Sbjct: 606 SEEGSSISGGQKQRI 620
Score = 30.1 bits (68), Expect = 6.8
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 866 LGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISR 925
+G+ A + Q+LS + + G L+ ++ ++ +F + FF T G I+SR
Sbjct: 200 IGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYI-KHLFELPMSFFSTRRTGEIVSR 258
Query: 926 FSKDVDILDNAIPFCIKSWLLCLF 949
F+ I+D + S +L LF
Sbjct: 259 FTDASSIID-----ALASTILSLF 277
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 66.2 bits (162), Expect = 1e-11
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV------------NTKGSI 736
L ++ V G + ++G GAGK++L+ L G + SG + + I
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 737 AFVPQQ-AWIQNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+VPQ+ + T+R+N+ F K R ++++ L
Sbjct: 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK----------- 129
Query: 789 IGEKGINLSGGQKQRV 804
+K LSGG KQR+
Sbjct: 130 ANKKVRTLSGGMKQRL 145
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 67.8 bits (166), Expect = 2e-11
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P L+ + + G +VA+VG G+GKS++ + L G+V G
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEM-LPAGDSTEIGEK 792
+A V Q+ + + ++R+NI +G T P A DF M P G TE+GEK
Sbjct: 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614
Query: 793 GINLSGGQKQRV 804
G LSGGQKQR+
Sbjct: 615 GSQLSGGQKQRI 626
Score = 35.5 bits (82), Expect = 0.14
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 605 RAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILP---NLLL 654
R R+ + ++L + FFD G + SR D T+ L N+LL
Sbjct: 231 RINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLL 283
Score = 30.5 bits (69), Expect = 5.6
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 890 GSLL-ASSVLHEFLLTRVFSAVIQ----FFDTTPQGRIISRFSKDVDILDNAIPF 939
GS + ++ + +F ++++ FFD G + SR S D + ++
Sbjct: 223 GSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSL 277
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 67.2 bits (165), Expect = 2e-11
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGSIAFVPQQ- 742
+N + G +A+VG GAGK+SL++AL G + KI+G + +
Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHL 425
Query: 743 AWI-QN-----ATLRDNIVFGKTHV-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795
+W+ QN TLRDN++ G + + ++ ++ +LP G T IG++
Sbjct: 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 796 LSGGQKQRV 804
LS GQ QR+
Sbjct: 486 LSVGQAQRL 494
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 66.9 bits (164), Expect = 3e-11
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------- 734
PP ++N ++ ++ G VA+VG G+GKS++ + G SG + G
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551
Query: 735 --SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC---ALTPDFEMLPAGDSTEI 789
S+A V Q ++ T+RDN+ +P ++ AC A+ P G E+
Sbjct: 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDA--DLVRACKDAAIHDVITSRPGGYDAEL 609
Query: 790 GEKGINLSGGQKQR 803
E G NLSGGQ+QR
Sbjct: 610 AEGGANLSGGQRQR 623
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 63.6 bits (156), Expect = 3e-11
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 38/140 (27%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
L +++ V EG +VA++G GAGK++L+ + G + SG + G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 736 ---IAFVPQ-QAWIQNATLRDNIVFG-----KTHVPRRYNKVIDACALTPDFEMLPAGDS 786
I +VP+ + T+ +N++ G + R +V +E+ P
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV---------YELFPR--- 121
Query: 787 TEIGE----KGINLSGGQKQ 802
+ E LSGG++Q
Sbjct: 122 --LKERRKQLAGTLSGGEQQ 139
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 65.3 bits (159), Expect = 8e-11
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 676 RNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG- 734
R+ E A S + +++ + G VAIVG GAGK++L++ L D G++ G
Sbjct: 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397
Query: 735 ------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDF-EML 781
SIA V Q A + N ++R+NI G+ A DF
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKR 457
Query: 782 PAGDSTEIGEKGINLSGGQKQRV 804
G T +GE+G LSGG++QR+
Sbjct: 458 SNGYDTLVGERGNRLSGGERQRL 480
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 62.7 bits (153), Expect = 9e-11
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 42/163 (25%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ EN +F + L+++++ + +G V ++G G+GKS+L+ L G +
Sbjct: 4 IEAENLSFRYPGRK--------AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55
Query: 725 KISGRVNTKGS--------------IAFVPQQAWIQ--NATLRDNIVFGKTH-------V 761
SG V G + V Q Q T+ D + FG + +
Sbjct: 56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI 115
Query: 762 PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
R + ++ L + P NLSGGQKQRV
Sbjct: 116 EERVAEALELVGLEELLDRPPF-----------NLSGGQKQRV 147
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 64.0 bits (156), Expect = 2e-10
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 20/137 (14%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-------------N 731
P L+N+N ++ G ++ I G G+GKS+L+S + D G + +
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386
Query: 732 TKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACA----LTPDFEMLPAGDST 787
+ +A V Q ++ + T+ +NI G+ P + I+ A + D LP G T
Sbjct: 387 WRSRLAVVSQTPFLFSDTVANNIALGR---PDATQQEIEHVARLASVHDDILRLPQGYDT 443
Query: 788 EIGEKGINLSGGQKQRV 804
E+GE+G+ LSGGQKQR+
Sbjct: 444 EVGERGVMLSGGQKQRI 460
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 63.8 bits (156), Expect = 2e-10
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------- 734
S +++++ + G VAIVG GAGKS+L++ L D SGR+ G
Sbjct: 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406
Query: 735 ---SIAFVPQQAWIQNATLRDNIVFGK---THVPRRYNKVIDACALTPDF-EMLPAGDST 787
+IA V Q A + N ++ DNI G+ T R A A DF E P G T
Sbjct: 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAER-AQAH--DFIERKPDGYDT 463
Query: 788 EIGEKGINLSGGQKQRV 804
+GE+G LSGG++QR+
Sbjct: 464 VVGERGRQLSGGERQRL 480
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 63.8 bits (156), Expect = 3e-10
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734
+ P L ++++++ G VAIVG G+GKS+L+ L G SG V G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+ V Q + + ++ +NI G + L D +P G T
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 789 IGEKGINLSGGQKQRV 804
I E G LSGGQ+QR+
Sbjct: 582 ISEGGGTLSGGQRQRL 597
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 61.4 bits (150), Expect = 3e-10
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 35/136 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--------IAFVP 740
L++IN+ V +G VAI+G G GKS+L+ + G SG V G I +V
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 741 QQA----WIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFE-MLPAGDSTE 788
Q+ W T+ DN+ G K R ++++ L FE P
Sbjct: 79 QEDALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPH----- 129
Query: 789 IGEKGINLSGGQKQRV 804
LSGG +QRV
Sbjct: 130 ------QLSGGMRQRV 139
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 61.1 bits (149), Expect = 7e-10
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 30/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMD----KISGRVNT-----KGSIA 737
L+++N+ + +G V ++G G GKS+L+ + G E I GR T K IA
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIA 78
Query: 738 FVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
V Q A + T+ +NI FG K + +R +V L P
Sbjct: 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ----- 133
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 134 ------LSGGQRQRV 142
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 62.0 bits (151), Expect = 8e-10
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P L I+ + G VAIVG GAGKS+++ L D SG + G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPR-RYNKVIDACALTPDFEMLPAGDSTEIGEK 792
+I VPQ + N T+ NI +G+ +A + + LP G T +GE+
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396
Query: 793 GINLSGGQKQRV 804
G+ LSGG+KQRV
Sbjct: 397 GLKLSGGEKQRV 408
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 59.0 bits (143), Expect = 1e-09
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 31/134 (23%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734
+ PP L+N++ +V+ G + IVG GAGKS+L+ AL ++ G++ G
Sbjct: 17 APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP 76
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
S+ +PQ + + T+R N+ +++ D + L
Sbjct: 77 LEDLRSSLTIIPQDPTLFSGTIRSNL--------DPFDEYSDEEI----YGAL------R 118
Query: 789 IGEKGINLSGGQKQ 802
+ E G+NLS GQ+Q
Sbjct: 119 VSEGGLNLSQGQRQ 132
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 58.4 bits (142), Expect = 1e-09
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
IEN +F++++ TE L ++++ + G ++A+ G GAGK++L L G + +
Sbjct: 2 IENISFSYKKGTE--------ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES 53
Query: 727 SGRVNTKG----------SIAFVPQQAWIQ--NATLRDNIVFGKTHVPRRYNKVIDACAL 774
SG + G SI +V Q Q ++R+ ++ G + + L
Sbjct: 54 SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--ETVL 111
Query: 775 TPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
D ++ + ++LSGGQKQR+
Sbjct: 112 K-DLDLYALKE-----RHPLSLSGGQKQRL 135
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 58.3 bits (142), Expect = 2e-09
Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 35/145 (24%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----- 734
G G + L++I++ V EG VA+VG G GKS+L+ + G SG V G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70
Query: 735 ---SIAFVPQQA----WIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFE- 779
+V QQ W T+ DN+ G K R ++++ L+ FE
Sbjct: 71 PGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFEN 126
Query: 780 MLPAGDSTEIGEKGINLSGGQKQRV 804
P LSGG +QRV
Sbjct: 127 AYPH-----------QLSGGMRQRV 140
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 60.9 bits (148), Expect = 2e-09
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
LQNIN+ V VA+VG G+GKS+L S L G G + G
Sbjct: 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR 414
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793
+A V Q + T N+ G+ + + ++ L LP G T +GE+G
Sbjct: 415 QGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474
Query: 794 INLSGGQKQ 802
NLS GQKQ
Sbjct: 475 NNLSVGQKQ 483
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 56.5 bits (137), Expect = 4e-09
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 61/153 (39%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L +EN +F + PP L+N++ + G +AI+G G+GKS+L + G +
Sbjct: 1 LEVENVSFRY-------PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR 53
Query: 725 KISGRVNTKGS-------------IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771
SGRV G+ + ++PQ + + ++ +NI
Sbjct: 54 PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------- 96
Query: 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
LSGGQ+QR+
Sbjct: 97 ------------------------LSGGQRQRL 105
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 58.0 bits (141), Expect = 5e-09
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L +EN +F G P L +++ + +G + I+G G+GKS+L+ L G +
Sbjct: 3 LEVENLSF---------GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53
Query: 725 KISGRV-------NTKGS------IAFVPQQAWIQNA-TLRDNIVFGKT--HVPRRYNKV 768
SG V + +A+VPQ T+ + ++ G+
Sbjct: 54 PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSK 113
Query: 769 IDACALTPDFEMLPAGDSTEIGEKGIN-LSGGQKQRV 804
D + E+L + ++ ++ LSGG++QRV
Sbjct: 114 EDEEIVEEALELL---GLEHLADRPVDELSGGERQRV 147
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 57.1 bits (139), Expect = 5e-09
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 30/137 (21%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDK----ISGRVNT-----KGS 735
L ++++ V G +A++G G GK++L+ + G D I GR T + +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 736 IAFVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDST 787
I V Q A + T+ +NI FG K + R ++++ L P
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE--- 130
Query: 788 EIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 131 --------LSGGQQQRV 139
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 55.8 bits (135), Expect = 7e-09
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L I N +F++ + L+N+++ +++G +A++G G+GKS+L+ L G++
Sbjct: 1 LSINNVSFSYPEQEQ-------QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53
Query: 725 KISGRVNTKGS------------IAFVPQQAWIQNATLRDNI 754
G + G I+ + Q+ ++ + TLR+N+
Sbjct: 54 PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL 95
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 57.1 bits (139), Expect = 7e-09
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L+ +++ V G +VA++G GAGK++L+ + G + SGR+ G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 735 SIAFVPQQAWI-QNATLRDNIVFGKTHVPRRYNKVIDACALTPD--FEMLPAGDSTEIGE 791
IA+VP+ I T+ +N++ G RR + + + +E+ P + E
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGA--YARRDKEAQER---DLEEVYELFP-----RLKE 128
Query: 792 ----KGINLSGGQKQ 802
+ LSGG++Q
Sbjct: 129 RRNQRAGTLSGGEQQ 143
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 56.3 bits (136), Expect = 1e-08
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 30/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-----------IA 737
L ++N+ V G+LVA++G G+GKS+L+ + G SGR+ G I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 738 FVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
FV Q A ++ T+RDNI FG K + R ++++ L + P
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 130 -----QLSGGQRQRV 139
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 56.0 bits (136), Expect = 1e-08
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L+ +++ V +G + ++G G GK++L+ L G + SG + G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 736 -IAFVPQ-QAWIQNATLRDNIVFGKTHVPRRYNKVID-ACALTPD-FEMLPAGDSTEIGE 791
IA+VPQ + T+ +N++ G +PRR K+ D L P EML G
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEML--------GR 127
Query: 792 KGINLSGGQKQ 802
+G +LSGGQ+Q
Sbjct: 128 RGGDLSGGQQQ 138
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 55.6 bits (135), Expect = 2e-08
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 37/144 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGS-------- 735
L++I++ + +G + A++G G GKS+L+ L D G V G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 736 -------IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA--------CALTPDFEM 780
+ V Q+ ++ DN+ +G + + +D AL +
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE--- 132
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
D + LSGGQ+QR+
Sbjct: 133 --VKDRL----HALGLSGGQQQRL 150
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 55.2 bits (134), Expect = 3e-08
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 39/164 (23%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ ++N + T+ G G E L+ +++ + +G VAIVG G+GKS+L++ L G +D
Sbjct: 1 IELKNLSKTY-----GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LD 54
Query: 725 KI-SGRVNTKG-----------------SIAFVPQQ-AWIQNATLRDNIVFGKTHVPRRY 765
+ SG V G I FV Q + + T +N+
Sbjct: 55 RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP- 113
Query: 766 NKVIDACALTPDFEMLPAGDSTEIGEKGIN-----LSGGQKQRV 804
K A E+L + +G++ +N LSGGQ+QRV
Sbjct: 114 KKERRERAE----ELL---ERVGLGDR-LNHYPSELSGGQQQRV 149
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 54.5 bits (131), Expect = 5e-08
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS---- 735
G A L NI++ VR G +AI G G GKS+L+ + + SG + +G
Sbjct: 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST 69
Query: 736 ---------IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDS 786
+++ Q + T+ DN++F RR ++ A L F +
Sbjct: 70 LKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-ALDLLARFAL----PD 124
Query: 787 TEIGEKGINLSGGQKQRVKWQVYLHYLKSIGL 818
+ + + LSGG+KQR+ L ++ I L
Sbjct: 125 SILTKNITELSGGEKQRIALIRNLQFMPKILL 156
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 55.0 bits (133), Expect = 6e-08
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 35/141 (24%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW-- 744
L++++ V EG VAIVG G+GKS+L L G + +G + T G + + W
Sbjct: 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVWDV 79
Query: 745 -------IQN-------ATLRDNIVFG--KTHVPR-----RYNKVIDACALTPDFEMLPA 783
QN AT++D++ FG VPR R ++ + + P
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH 139
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
LSGGQKQRV
Sbjct: 140 -----------RLSGGQKQRV 149
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 56.4 bits (137), Expect = 6e-08
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 42/163 (25%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L + N +FT+ + P L+ ++++++ G VA++G G GKS+L+ L D
Sbjct: 339 LTLNNVSFTYPDQPQ-------PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD 391
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDA 771
G + G +I+ V Q+ + +ATLRDN++ D
Sbjct: 392 PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-------PNASDE 444
Query: 772 CALTPDFEML-----------PAGDSTEIGEKGINLSGGQKQR 803
AL E+L G + +GE G LSGG+++R
Sbjct: 445 -ALI---EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 53.3 bits (129), Expect = 1e-07
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA--------FVP 740
L++++ V G + ++G GAGKS+L+ L G SG V +G ++ F P
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97
Query: 741 QQAWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEM 780
T R+NI + + + +++I+ L ++
Sbjct: 98 ------ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDL 138
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 53.3 bits (129), Expect = 1e-07
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 41/155 (26%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--------R 729
G G E L+++N+ + G VAIVG G+GKS+L++ L G +DK +
Sbjct: 10 IYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL-GGLDKPTSGEVLINGKD 68
Query: 730 VNTKGS----------IAFVPQQ-AWIQNATLRDNI----VFGKTHVPRRYNKVIDACAL 774
+ I FV Q + + T+ +N+ + RR +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEEL--- 125
Query: 775 TPDFEMLPAGDSTEIGEKGIN-----LSGGQKQRV 804
E+L + ++ + LSGGQ+QRV
Sbjct: 126 ---LEVL------GLEDRLLKKKPSELSGGQQQRV 151
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 53.6 bits (130), Expect = 1e-07
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
L ++++ +R G +VAI+G GAGKS+L+ AL GE+ SG V G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 51.5 bits (124), Expect = 2e-07
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 41/120 (34%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744
L N+++ ++ G +VA+VG G+GKS+L+ A+ G + SG +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-------------- 56
Query: 745 IQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
L D K + ++ +P LSGGQ+QRV
Sbjct: 57 -----LIDGKDIAKLPLEELRRRIG----------YVPQ------------LSGGQRQRV 89
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 51.2 bits (124), Expect = 2e-07
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 27/116 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L +I++ V +G + ++G GAGK++L+ + G + SG +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI------------------ 57
Query: 749 TLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
V GK + + +V P+ L + + + LSGG KQR+
Sbjct: 58 -----KVLGK-DIKKEPEEVKRRIGYLPEEPSLYENLT---VRENLKLSGGMKQRL 104
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 50.9 bits (123), Expect = 3e-07
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 52/130 (40%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L ++++ + G +V I+G GAGKS+L+ L G + SG + G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795
IA+VPQ A L + ++ N
Sbjct: 75 IAYVPQ-----------------------------ALELL---------GLAHLADRPFN 96
Query: 796 -LSGGQKQRV 804
LSGG++QRV
Sbjct: 97 ELSGGERQRV 106
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 51.9 bits (125), Expect = 6e-07
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 27/140 (19%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSS-------LVSALCGEMDKISGRVNTKGSI 736
L+N++ + EG VAI+G G+GKS+ L+ GE+ KI G +K ++
Sbjct: 20 SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78
Query: 737 AFVPQQAWI--QN-------ATLRDNIVFG---KTHVPRRYNKVIDACALTPDFEMLPAG 784
+ ++ I QN AT+ D+I FG K P++ +ID A E
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY--- 135
Query: 785 DSTEIGEKGINLSGGQKQRV 804
+ ++ NLSGGQKQRV
Sbjct: 136 ----LDKEPQNLSGGQKQRV 151
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 52.4 bits (126), Expect = 6e-07
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 34/139 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-----------IA 737
L +I++ + G +VA++G G+GK++L+ + G + SG + G+ +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 738 FVPQQ-AWIQNATLRDNIVFGKTHVPRRY--NKVIDACALTPDFEML---------PAGD 785
FV Q A ++ T+ DNI FG T +PRR N +T EM+ PA
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-- 135
Query: 786 STEIGEKGINLSGGQKQRV 804
LSGGQKQRV
Sbjct: 136 ---------QLSGGQKQRV 145
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 51.2 bits (123), Expect = 6e-07
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 34/141 (24%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------S 735
L ++++ + G LVA++G G+GK++L+ + G SG + G +
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 736 IAFVPQQ-AWIQNATLRDNIVFG-----------KTHVPRRYNKVIDACALTPDFEMLPA 783
+ FV Q A ++ T+ DN+ FG + + + ++++ L + PA
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 136 -----------QLSGGQRQRV 145
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 52.5 bits (127), Expect = 6e-07
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 31/145 (21%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
+++++ VR G +V I G G G+S LV A+ G SGR+ G
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 736 ----IAFVP----QQAWIQNATLRDNIVFGKTHVPR-------RYNKVIDACA-LTPDFE 779
+A+VP + + +L +N+V G+ + L +F+
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFD 391
Query: 780 MLPAGDSTEIGEKGINLSGGQKQRV 804
+ +LSGG +Q++
Sbjct: 392 VRAPSPDAPAR----SLSGGNQQKL 412
Score = 43.3 bits (103), Expect = 5e-04
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
++++ V++G + A++G GAGKS+L+ L G SG + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 736 -IAFVPQQ-AWIQNATLRDNIVFG 757
I V Q + T+ +NI+ G
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILG 103
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 51.0 bits (123), Expect = 7e-07
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 35/149 (23%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--------------EMDK 725
G+ L+++++ V +G + I+G GAGKS+L+ + G ++
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL 71
Query: 726 ISGR--VNTKGSIAFVPQQ-AWIQNATLRDNIVF-------GKTHVPRRYNKVIDACALT 775
+SG+ + I + Q + + T+ +N+ K + R ++++ L
Sbjct: 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE 131
Query: 776 PDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ PA LSGGQKQRV
Sbjct: 132 DKADAYPA-----------QLSGGQKQRV 149
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 49.7 bits (120), Expect = 9e-07
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----- 735
G +++++ VR G +V I G VG G++ L AL G SG + G
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRR 67
Query: 736 ---------IAFVP----QQAWIQNATLRDNIVFG 757
IA+VP ++ + + ++ +NI
Sbjct: 68 SPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 51.1 bits (123), Expect = 9e-07
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA--FVPQQAWIQ 746
L++I+ + +G V I+G GAGKS+L+ + G SG+V G +A +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 747 NATLRDNIVF 756
T R+NI
Sbjct: 103 ELTGRENIYL 112
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 52.1 bits (126), Expect = 1e-06
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L +++ VR G + A++G GAGKS+L+ L G SG + G
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 736 -IAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVID-------ACALTPDFEMLPAGDS 786
IA V Q+ + + N ++ +NI G P R +ID A L L G
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLG--REPTRRFGLIDRKAMRRRAREL---LARL--GLD 136
Query: 787 TEIGEKGINLSGGQKQRV 804
+ +LS Q+Q V
Sbjct: 137 IDPDTLVGDLSIAQRQMV 154
Score = 46.0 bits (110), Expect = 9e-05
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 35/155 (22%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----- 735
+++++ VR G ++ I G VGAG++ L AL G SG + G
Sbjct: 267 RNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR 326
Query: 736 ---------IAFVP----QQAWIQNATLRDNIVFGKTHVPRRYNK-VID-------ACAL 774
IA+VP + + + ++ +NI + R + +ID A
Sbjct: 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL--ASLRRFSRRGLIDRRKERALAERY 384
Query: 775 TPDFEMLPAGDSTEIGEKGINLSGGQKQRV---KW 806
+ IG LSGG +Q+V +W
Sbjct: 385 IRRLRIKTPSPEQPIG----TLSGGNQQKVVLARW 415
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 51.5 bits (124), Expect = 1e-06
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIA 737
+ +I++ +++G V ++G G GK++L+ + G SG + G I
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80
Query: 738 FVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN- 795
V Q A + T+ +N+ FG + I A E L ++ +
Sbjct: 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE----EALELVGLEGFADRKPHQ 136
Query: 796 LSGGQKQRV 804
LSGGQ+QRV
Sbjct: 137 LSGGQQQRV 145
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 51.5 bits (124), Expect = 1e-06
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--SIAFVPQQAWIQ 746
L +N VR G + I G GAGK+SL+ AL G SGR++ ++ F+PQ+ ++
Sbjct: 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468
Query: 747 NATLRDNIVFGKTHVP---RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803
TLR+ + + V+ L D A E LSGG++QR
Sbjct: 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGL-GDL----AERLDEEDRWDRVLSGGEQQR 523
Query: 804 V 804
+
Sbjct: 524 L 524
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
L +++ +R G ++AI+G GAGKS+L+ AL GE+ SG V G
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 736 IAFVPQQAWIQNA-TLRDNIVFG-----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
A +PQ + + T+++ + G P ++ D L D
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT- 135
Query: 790 GEKGINLSGGQKQRV 804
LSGG++QRV
Sbjct: 136 ------LSGGEQQRV 144
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 50.8 bits (122), Expect = 2e-06
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 35/142 (24%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
L +I++ ++ G LVA++G GAGKS+L+ + G +GR+ G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 736 ---IAFVPQQ-AWIQNATLRDNIVFG---------KTHVPRRYNKVIDACALTPDFEMLP 782
+ FV Q A + T+ DNI FG + + R +++ L + P
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135
Query: 783 AGDSTEIGEKGINLSGGQKQRV 804
A LSGGQ+QRV
Sbjct: 136 A-----------QLSGGQRQRV 146
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 49.6 bits (119), Expect = 2e-06
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDK----ISGRVNT-----KGSI 736
L ++N+ + +G V ++G G GK++ + + G E I GR T I
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74
Query: 737 AFVPQQ-AWIQNATLRDNIVFGKT--HVPRRY--NKVIDACALTPDFEMLPAGDSTEIGE 791
A V Q A + T+ DNI FG VP+ +V + E+L +
Sbjct: 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA------ELL--QIEHLLDR 126
Query: 792 KGINLSGGQKQRV 804
K LSGGQ+QRV
Sbjct: 127 KPKQLSGGQRQRV 139
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 49.5 bits (119), Expect = 2e-06
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 35/144 (24%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--------NTKGS- 735
L++++ + +G V + G GAGKS+L+ + GE G++ KG
Sbjct: 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGRE 73
Query: 736 IAFVPQQAWI--------QNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEM 780
I F+ +Q + + T+ +N+ + RR ++V+D L
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA 133
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
LP LSGG++QRV
Sbjct: 134 LP-----------SQLSGGEQQRV 146
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 50.7 bits (122), Expect = 2e-06
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 39/153 (25%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L EN + ++ L++++ R+ G +AIVG GAGKS+L+ L GE+
Sbjct: 322 LEFENVSKGYD--------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373
Query: 725 KISGRV--NTKGSIAFVPQQ--AWIQNATLRDNIVFGKTHVPRRYNKVID---------A 771
+SG V I + Q + T+ + + D
Sbjct: 374 PLSGTVKVGETVKIGYFDQHRDELDPDKTVLEEL--------SEGFPDGDEQEVRAYLGR 425
Query: 772 CALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T + + P G LSGG+K R+
Sbjct: 426 FGFTGEDQEKPVGV----------LSGGEKARL 448
Score = 48.4 bits (116), Expect = 2e-05
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--IAFVPQ-QAWI 745
L+N+++ + G + +VG GAGKS+L+ L GE++ SG V + ++ Q
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 746 QNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK------------- 792
T+ D ++ G + ++ +A AL D + + + E+
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 793 ----GI--------NLSGGQKQRV 804
G +LSGG ++RV
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRV 162
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 47.9 bits (115), Expect = 3e-06
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAFVPQQAWIQ 746
L++++ ++ G + I G G GKSSL AL G SGR+ + F+PQ+ ++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 747 NATLRDNIVF 756
TLR+ +++
Sbjct: 77 LGTLREQLIY 86
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 48.3 bits (116), Expect = 3e-06
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--KISGRV----------NTKGSI 736
L+N++ + + G L AI+G GAGKS+L++AL G +SG V + + I
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84
Query: 737 AFVPQQ 742
+VPQ
Sbjct: 85 GYVPQD 90
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 47.1 bits (113), Expect = 4e-06
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ +EN + T+ L++I++ + G + +VG GAGKS+L+ + GE++
Sbjct: 1 IELENLSKTYG---------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE 51
Query: 725 KISGRVNT--KGSIAFVPQ 741
G V I + Q
Sbjct: 52 PDEGIVTWGSTVKIGYFEQ 70
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 48.7 bits (117), Expect = 4e-06
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 44/156 (28%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----- 734
G S L +++ +++G + +VG G+GKS+L A+ G + SG + G
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK 71
Query: 735 -----------SIAFVPQQAWIQNA-----TLRDNI-----VFGKTHVPRRYNKVIDACA 773
I V Q ++ T+ + I + GK + +
Sbjct: 72 LSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLL 129
Query: 774 ----LTPDF-EMLPAGDSTEIGEKGINLSGGQKQRV 804
L + P LSGGQ+QRV
Sbjct: 130 VGVGLPEEVLNRYPHE-----------LSGGQRQRV 154
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 48.5 bits (116), Expect = 5e-06
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-----------IA 737
L+N+++ V G I+G G+GKS L+ + G + SG++ G I+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 738 FVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796
+VPQ A + T+ NI +G R+ +K + EML G + K L
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKK--RKVDKKEIERKVLEIAEML--GIDHLLNRKPETL 130
Query: 797 SGGQKQRV 804
SGG++QRV
Sbjct: 131 SGGEQQRV 138
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 49.5 bits (118), Expect = 5e-06
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
L +++ VREG+LV +VG GAGK++L+ A+ G + +G V G
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 735 -SIAFVPQQAWIQ-NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
+A VPQ + +R + G+T R++ + + + + ++
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE-RAMERTGVAQFADR 135
Query: 793 GI-NLSGGQKQRV 804
+ +LSGG++QRV
Sbjct: 136 PVTSLSGGERQRV 148
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 48.0 bits (115), Expect = 6e-06
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG---EMDKISGRV----------NTKGS 735
L ++++ V G ++AI+GS G+GK++L+ A+ G SG++ +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 736 IAFVPQQ-AWIQNATLRDNIVF-GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793
+A+V Q + T+R+ + + +PR+ + I D + + G
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK-KRVEDVLLRDLALTRIGGNLV 141
Query: 794 INLSGGQKQRV 804
+SGG+++RV
Sbjct: 142 KGISGGERRRV 152
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 47.8 bits (114), Expect = 7e-06
Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 35/142 (24%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
L IN+ + G V +VG GAGKS+L+ + E SG + G
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 735 ----SIAFVPQQA-WIQNATLRDNIVF-----GKTH--VPRRYNKVIDACALTPDFEMLP 782
I V Q + + + +N+ F G + +R ++ L+ LP
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 783 AGDSTEIGEKGINLSGGQKQRV 804
A LSGG++QRV
Sbjct: 135 AE-----------LSGGEQQRV 145
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 49.0 bits (117), Expect = 1e-05
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK---GSIAFVPQQAWI 745
+++++ V G + I G G GKSSL L GE+ + G TK G + +VPQ+ ++
Sbjct: 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPAKGKLFYVPQRPYM 526
Query: 746 QNATLRDNIVFGKTHVPRRYNKVIDACALTPDFE-MLPAGDSTEIGEKGIN--------- 795
TLRD I++ P + D E +L T I E+
Sbjct: 527 TLGTLRDQIIY-----PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMD 581
Query: 796 -LSGGQKQRV 804
LSGG+KQR+
Sbjct: 582 VLSGGEKQRI 591
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 46.3 bits (111), Expect = 1e-05
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L +++ VR G + A++G GAGKS+L+ L G SG +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 47.0 bits (112), Expect = 1e-05
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
T G+G L+ + + V+ G VAIVG G+GKS+L++ L G D SG V
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 47.2 bits (113), Expect = 1e-05
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--------NTKGS----- 735
L+++N+ + +G +VAI+G GAGKS+L+ +L G +D SG + KG
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 736 ---IAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE--- 788
I + QQ + ++ +N++ G+ + + L + A D+ E
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGR--LGYT-STWRSLFGLFSKEDKAQALDALERVG 136
Query: 789 IGEKGI----NLSGGQKQRV 804
I +K LSGGQ+QRV
Sbjct: 137 ILDKAYQRASTLSGGQQQRV 156
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 44.6 bits (106), Expect = 2e-05
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 713 SSLVSALCGEMDKISGRVNTKG--------------SIAFVPQQAWI-QNATLRDNIVFG 757
S+L+ + G + SG + G I V Q + T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 758 --KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVK 805
R + ++ L E LSGGQKQRV
Sbjct: 61 LRDKEADARAEEALERVGLPDF----------LDREPVGTLSGGQKQRVA 100
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 47.6 bits (114), Expect = 2e-05
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 33/142 (23%)
Query: 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------- 734
L ++++ + +G + I+G GAGKS+L+ + SG V G
Sbjct: 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78
Query: 735 -----SIAFVPQQ-AWIQNATLRDNIVFG--KTHVPR--RYNKVIDACALT--PDFEMLP 782
I + Q + + T+ +N+ F VP+ +V + L D
Sbjct: 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA--- 135
Query: 783 AGDSTEIGEKGINLSGGQKQRV 804
D LSGGQKQRV
Sbjct: 136 --DRYP-----AQLSGGQKQRV 150
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 47.3 bits (113), Expect = 2e-05
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-------RVN----TKGSIAF 738
++IN+ + EG V VG G GKS+L+ + G D SG R+N + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
Query: 739 VPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
V Q A + ++ +N+ FG K + +R N+V + L + P
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA------ 133
Query: 791 EKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 134 -----LSGGQRQRV 142
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 46.6 bits (111), Expect = 2e-05
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 41/161 (25%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
++N TF ++ + E TL +++ V++G ++I+G G+GKS+ V + G ++
Sbjct: 7 VKNLTFKYKEDQEK------YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 727 SGRVNTKGSIAFVPQQAW---------IQN-------ATLRDNIVFGKTH--VPRR--YN 766
SG++ G + W QN AT+ D++ FG + +P
Sbjct: 61 SGQIIIDGD-LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE 119
Query: 767 KVIDACALT--PDFEML-PAGDSTEIGEKGINLSGGQKQRV 804
+V +A L DF+ PA LSGGQKQRV
Sbjct: 120 RVNEALELVGMQDFKEREPA-----------RLSGGQKQRV 149
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 47.6 bits (114), Expect = 3e-05
Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 35/150 (23%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG----EMDKISGRVNTKGS---- 735
P +++++ V G ++ IVG G+GKS+L AL G SG V G
Sbjct: 20 GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79
Query: 736 -------------IAFVPQ---QAWIQNATLRDNI-----VFGKTHVPRRYNKVIDACAL 774
IA + Q + T+ D I + GK + ++
Sbjct: 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL--- 136
Query: 775 TPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
E + D LSGG +QRV
Sbjct: 137 ---LEQVGLPDPERRDRYPHQLSGGMRQRV 163
Score = 41.4 bits (98), Expect = 0.002
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 44/146 (30%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ------- 741
+ +++ +REG + +VG G+GKS+L L G + S GSI F Q
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPSS-----GSIIFDGQDLDLTGG 360
Query: 742 ---------QAWIQNA--------TLRDNI-----VFGKTHVPRRYNKVIDACALTPDFE 779
Q Q+ T+ D + + G R +V + L
Sbjct: 361 ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV---- 416
Query: 780 MLPAGDSTEIGEKGIN-LSGGQKQRV 804
G E ++ + LSGGQ+QRV
Sbjct: 417 ----GLPPEFLDRYPHELSGGQRQRV 438
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 46.6 bits (111), Expect = 4e-05
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-IAFVPQQ----- 742
L++I++ V++G V ++G G GK++L+ + G + +G + G I +P Q
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79
Query: 743 ------AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN- 795
A N T+ DNI +G R + A E+L K
Sbjct: 80 IVFQSYALFPNLTVADNIAYGLK--NRGMGR---AEVAERVAELLDLVGLPGSERKYPGQ 134
Query: 796 LSGGQKQRV 804
LSGGQ+QRV
Sbjct: 135 LSGGQQQRV 143
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 45.3 bits (108), Expect = 4e-05
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 20/128 (15%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ-- 746
L +I++ V++G + +G GAGK++ + + G + SG + G +A +
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 747 ----------NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796
N T R+N+ + K ID +++ G +K
Sbjct: 76 ALIEAPGFYPNLTARENLRLLAR-LLGIRKKRIDEV-----LDVV--GLKDSAKKKVKGF 127
Query: 797 SGGQKQRV 804
S G KQR+
Sbjct: 128 SLGMKQRL 135
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 45.9 bits (109), Expect = 5e-05
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 28/139 (20%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM---DKISGRVNTKGSIAFVPQQA 743
P L +I+ + G+ A++G G+GKS++ + G + D + ++ G I +
Sbjct: 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTV 79
Query: 744 W---------IQN-------ATLRDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGD 785
W QN AT+ D++ FG VPR I L D ML D
Sbjct: 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA-DVGMLDYID 138
Query: 786 STEIGEKGINLSGGQKQRV 804
S + NLSGGQKQRV
Sbjct: 139 S-----EPANLSGGQKQRV 152
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 45.4 bits (108), Expect = 5e-05
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 28/127 (22%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISG---RVN------TKGSIAFVPQQAWI--- 745
+ I G+ GAGKS+L+ + G ++K G +N ++ I PQQ I
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 746 -QNATL------RDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI-NLS 797
Q L R+N+ FG + R+ N+ E+L + + LS
Sbjct: 81 FQQYALFPHLNVRENLAFG---LKRKRNREDRISVD----ELLDLLGLDHLLNRYPAQLS 133
Query: 798 GGQKQRV 804
GG+KQRV
Sbjct: 134 GGEKQRV 140
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 45.9 bits (109), Expect = 5e-05
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP---QQA 743
L+++++ + G LV ++G G GK++L++ + G + G + G P +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78
Query: 744 WIQNA------TLRDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI- 794
QN + DN+ FG + + + I +ML K I
Sbjct: 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAH-------QMLALVGLEGAEHKYIW 131
Query: 795 NLSGGQKQRV 804
LSGG +QRV
Sbjct: 132 QLSGGMRQRV 141
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 45.2 bits (108), Expect = 5e-05
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 44/145 (30%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L+ +++ VR G ++AI+G G+GKS+L+ + G + SG V G
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 736 ---IAFVPQQAWIQNA-----TLRDNIVF--------GKTHVPRRYNKVIDACALTPDFE 779
+ + Q A T+ +N+ F + + + ++A L +
Sbjct: 76 RRRMGMLFQ----SGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED 131
Query: 780 MLPAGDSTEIGEKGINLSGGQKQRV 804
+ PA LSGG K+RV
Sbjct: 132 LYPA-----------ELSGGMKKRV 145
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 44.8 bits (107), Expect = 6e-05
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTKGSIAF 738
L+ +N+ +++G + A++G G+GKS+L + G ++ T+G I F
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-----TEGEILF 61
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 45.1 bits (107), Expect = 8e-05
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 35/140 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------SIAFVP 740
L+ IN + +G +VA++G GAGKS+L G + SG V KG S+ V
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 741 QQAWI--QNA-------TLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAG 784
+ I QN T+ +++ FG K V +R + + A + FE P
Sbjct: 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPH 136
Query: 785 DSTEIGEKGINLSGGQKQRV 804
+LSGGQK+RV
Sbjct: 137 ----------HLSGGQKKRV 146
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 44.3 bits (105), Expect = 9e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
EG L+ +++ + +G +VAIVGS G+GKS+L+ L G + SG V G
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG 66
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 44.5 bits (105), Expect = 1e-04
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L +++ + +G +V ++G+ GAGK++L+ LCG+ SGR+ G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 735 SIAFVPQQAWI-QNATLRDNIVFGKTHVPR-RYNKVIDACALTPDFEMLPAGDSTEIGEK 792
++A VP+ + T+ +N+ G R ++ + I +E+ P I
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRIQRA 135
Query: 793 GINLSGGQKQ 802
G +SGG++Q
Sbjct: 136 G-TMSGGEQQ 144
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 44.7 bits (105), Expect = 1e-04
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 35/144 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR------------------- 729
L+NINM E + AI+G G GKS+L+ AL D +SG
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 730 -VNTKGSIAFVPQQAWIQNATLRDNIVFGK----THVPRRYNKVIDA----CALTPDFEM 780
VN + + V QQ ++ DN+ FG T R ++V++ AL + +
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK- 138
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
+ + G+ LSGGQ+QR+
Sbjct: 139 ------DNLHKSGLALSGGQQQRL 156
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 44.9 bits (106), Expect = 1e-04
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 33/162 (20%)
Query: 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
+V+ + T TW RN G A L++ + V G++ A+VG G+GKS+L AL G
Sbjct: 4 QAGIVVNDVTVTW-RN--GHTA-----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMG 55
Query: 722 EMDKISGRVNTKGS----------IAFVPQQA---WIQNATLRDNIVFGK------THVP 762
+ SG+++ G +A+VPQ W + D ++ G+
Sbjct: 56 FVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA 115
Query: 763 RRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
++ ++ I AL +M+ +IGE LSGGQK+RV
Sbjct: 116 KKRDRQIVTAALA-RVDMVEF-RHRQIGE----LSGGQKKRV 151
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 44.1 bits (104), Expect = 1e-04
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--------IAFVPQQ--- 742
+ +G L+ ++G GAGK++L+ A+ G + G V G+ I +VPQ+
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 743 AWIQNATLRDNIVFGKTHV--PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI-NLSGG 799
AW ++ ++ G+T R V D A+ + L TE+ ++ + LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR---DALRRVGLTELADRPVGELSGG 117
Query: 800 QKQRV 804
Q+QRV
Sbjct: 118 QRQRV 122
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 43.2 bits (102), Expect = 2e-04
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-------- 735
P L+ +N G ++A++G+ GAGKS+L+ L G + SG V G
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 736 -------IAFVPQQAWIQ--NATLRDNIVFGKTHV---PRRYNKVIDACALTPDFEMLPA 783
+ V Q Q A + ++ FG ++ + + E L A
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTA 114
Query: 784 GDSTEIGEKGIN-LSGGQKQRV 804
++ + E+ + LSGG+K+RV
Sbjct: 115 VGASGLRERPTHCLSGGEKKRV 136
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 43.8 bits (104), Expect = 2e-04
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
L +++ +V G AIVG GAGK++L+S L GE SG V G
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104
Query: 735 --SIAFV-PQQAWIQ--NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
I V + T+RD ++ G Y + + A L +L + +
Sbjct: 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL 164
Query: 790 GEKGI-NLSGGQKQRV 804
++ +LS G+++RV
Sbjct: 165 ADRPFGSLSQGEQRRV 180
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 43.7 bits (104), Expect = 2e-04
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 38/141 (26%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQN- 747
L+ I++ V +G +V I+G G+GKS+L+ L G +++ GSI + +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEP-----DSGSITVDGEDVGDKKD 71
Query: 748 -ATLRDNIVFGKTHVPRRYN-----KVIDACALTPDFEM----LPAGDSTEIGEK----- 792
LR + V +++N V++ L P + L ++ E +
Sbjct: 72 ILKLRRKVGM----VFQQFNLFPHLTVLENVTLAP---VKVKKLSKAEAREKALELLEKV 124
Query: 793 GI---------NLSGGQKQRV 804
G+ LSGGQ+QRV
Sbjct: 125 GLADKADAYPAQLSGGQQQRV 145
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 43.7 bits (103), Expect = 2e-04
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP 740
EG+ L N++ + EG ++AIVGS G+GKS+L+ L G SG V G +
Sbjct: 17 EGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP--MS 74
Query: 741 QQAWIQNATLRDN---IVFGKTHV------------PRRYNKVIDACALTPDFEMLPA-G 784
+ + A LR+ ++ H+ P K A + EML A G
Sbjct: 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVG 134
Query: 785 DSTEIGEKGINLSGGQKQRV 804
+ LSGG++QRV
Sbjct: 135 LEHRANHRPSELSGGERQRV 154
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 43.7 bits (104), Expect = 2e-04
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 42/147 (28%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD------KISGRVNTKG-------- 734
L++IN+ + + + A++G G GKS+L+ L M+ ++ G V G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 735 -------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRY---NKVIDAC---ALTPDFEML 781
+ V Q+ ++ DN+ +G R + +K +D +L
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYG----LRLHGIKDKELDEIVESSLK------ 131
Query: 782 PAGDSTEIGEK----GINLSGGQKQRV 804
A E+ ++ + LSGGQ+QR+
Sbjct: 132 KAALWDEVKDRLHKSALGLSGGQQQRL 158
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 43.3 bits (103), Expect = 2e-04
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 39/141 (27%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P + ++++ V +G + ++G GAGK++ + L GE+ SG G
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQ 75
Query: 735 SIAFVPQQAWIQNA-----TLRDNIVF-----GKTHVPRRYN--KVIDACALTPDFEMLP 782
S+ + PQ +A T+R+++ F G + ++ LT D
Sbjct: 76 SLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKR 130
Query: 783 AGDSTEIGEKGINLSGGQKQR 803
A LSGG K++
Sbjct: 131 ART----------LSGGMKRK 141
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 43.6 bits (103), Expect = 2e-04
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
L++I+++ G + IVG GAGKS+L+ + +D G + G
Sbjct: 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78
Query: 736 IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI- 794
I V QQ + T++DNI +G + K +D ++ + G + E + +
Sbjct: 79 IGMVFQQPHLFEGTVKDNIEYGPM---LKGEKNVDV-----EYYLSIVGLNKEYATRDVK 130
Query: 795 NLSGGQKQRV 804
NLSGG+ QRV
Sbjct: 131 NLSGGEAQRV 140
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 44.1 bits (104), Expect = 2e-04
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 45/145 (31%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L N+++ V G + ++G+ GAGKS+L+ + SG V G + N+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQ-----DLTTLSNS 75
Query: 749 TL---RDNI--------------VFG------------KTHVPRRYNKVIDACALTPDFE 779
L R I VFG K + R+ +++ L +
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD 135
Query: 780 MLPAGDSTEIGEKGINLSGGQKQRV 804
P+ NLSGGQKQRV
Sbjct: 136 SYPS-----------NLSGGQKQRV 149
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 43.2 bits (102), Expect = 3e-04
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 30/141 (21%)
Query: 683 AESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-IAFVPQ 741
A L NI+ +R G I G G GKS+L+ + + SG + +G I+ +
Sbjct: 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP 76
Query: 742 QAWIQNA------------TLRDNIVF-----GKTHVPRRYNKVIDACALTPDFEMLPAG 784
+ + Q T+ DN++F + P + ++ AL PD
Sbjct: 77 EIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFAL-PD------- 128
Query: 785 DSTEIGEKGIN-LSGGQKQRV 804
I K I LSGG+KQR+
Sbjct: 129 ---TILTKNIAELSGGEKQRI 146
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 43.1 bits (102), Expect = 3e-04
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF---------- 738
L+NIN+ + + + A++G G GKS+L+ +L D + G V +G + F
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPG-VRIEGKVLFDGQDIYDKKI 75
Query: 739 -----------VPQQAWIQNATLRDNIVFG-KTHVPRRYNKVIDACALTPDFEMLPAGDS 786
V Q+ ++ DNI +G + H + K +D + A
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLH-GIKDKKELDEIVEE---SLKKAALW 131
Query: 787 TEIGEK----GINLSGGQKQRV 804
E+ ++ + LSGGQ+QR+
Sbjct: 132 DEVKDRLHDSALGLSGGQQQRL 153
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 43.1 bits (102), Expect = 3e-04
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP---QQA 743
P L++IN+ + G L+ ++G G GK++L++ + G + G + G P +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 744 WIQNATL------RDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI- 794
QN L +DN+ FG V + I +ML ++ I
Sbjct: 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAH-------QMLKKVGLEGAEKRYIW 127
Query: 795 NLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 128 QLSGGQRQRV 137
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 44.1 bits (104), Expect = 4e-04
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 2/121 (1%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--NTKGSIAFVPQQAW 744
L+N+N+ ++ G +VA+VG GAGK++L+ + G G +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 745 IQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ T + +K D A D+ K LS GQK+R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERA 516
Query: 805 K 805
K
Sbjct: 517 K 517
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 42.5 bits (101), Expect = 4e-04
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 31/138 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L+ I++ V++G +V I+G G+GKS+L+ + + SG + G ++
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI---N 72
Query: 749 TLRDNI--VFGKTHVPRRYN-----KVIDACALTP-DFEMLPAGDSTEIGEK-----GI- 794
LR + VF +++N V++ L P + + ++ E + G+
Sbjct: 73 ELRQKVGMVF------QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA 126
Query: 795 --------NLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 127 DKADAYPAQLSGGQQQRV 144
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 42.7 bits (101), Expect = 4e-04
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 26/137 (18%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
L ++++ + +G + +I+G GAGKS+L+S + + K SG + G
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 735 -SIAFVPQQAWIQ-NATLRDNIVFGK----THVPRRYNKVIDACALTPDFEMLPAGDSTE 788
++ + Q+ I T+RD + FG+ + ++ I A+ E L +
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI----EYL---HLED 127
Query: 789 IGEKGIN-LSGGQKQRV 804
+ ++ ++ LSGGQ+QR
Sbjct: 128 LSDRYLDELSGGQRQRA 144
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 42.2 bits (100), Expect = 4e-04
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 669 NGTFTWER-----NTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC--- 720
TW+ +G L NI+ V+ GTL A++G GAGK++L+ L
Sbjct: 1 GSVLTWKNLNYTVPVKGG---KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57
Query: 721 ------GEMDKISGRVNTKG---SIAFVPQQ-AWIQNATLRDNIVF 756
GE+ I+GR K S +V QQ N T+R+ + F
Sbjct: 58 TAGVITGEI-LINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRF 102
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 41.8 bits (99), Expect = 5e-04
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 54/132 (40%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L ++++ + G +VA++G G+GKS+L+ + G + SG + G
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 735 -SIAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
I V Q A + T+ +NI G
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIALG----------------------------------- 100
Query: 793 GINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 101 ---LSGGQQQRV 109
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 43.3 bits (103), Expect = 5e-04
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 50/147 (34%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSL---VSAL----CGEMDKISGR-VNTKG---- 734
++ I++ V +G + +VG G GKS+L V+ L GE+ I GR VN
Sbjct: 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW-IGGRVVNELEPADR 76
Query: 735 SIAFVPQQAWIQN------ATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEML 781
IA V QN ++R+N+ +G K + R +
Sbjct: 77 DIAMV-----FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE-------------- 117
Query: 782 PAGDSTEIGE----KGINLSGGQKQRV 804
A E+ K LSGGQ+QRV
Sbjct: 118 -AARILELEPLLDRKPRELSGGQRQRV 143
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 42.6 bits (101), Expect = 5e-04
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 36/141 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
+ ++++ VREG + I+G G+GKS+L+ + ++ SG+V G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 735 ---SIAFVPQQ-AWIQNATLRDNIVFGK--THVPR-----RYNKVIDACALTPDFEMLPA 783
I+ V Q A + + T+ +N+ FG VPR R + ++ L P
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP- 158
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
E LSGG +QRV
Sbjct: 159 ------DE----LSGGMQQRV 169
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 42.6 bits (101), Expect = 5e-04
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTKGSIAF 738
L+ +N+ V+EG + AI+G G+GKS+L + G ++ T+G I F
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-----TEGEILF 65
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 42.9 bits (102), Expect = 5e-04
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
+ ++ +++G ++ IVG G+GKS L A+ G + K + R+ G I F
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI-VGGEILF 69
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 42.1 bits (100), Expect = 5e-04
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 25/134 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
+ +++ V++G +V ++G GAGK++ + G + SG++ G
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 735 SIAFVPQQAWI-QNATLRDNI--VFGKTHVPRRY-NKVIDACALTPDFEMLPAGDSTEIG 790
I ++PQ+A I + T+ +NI V + ++ + ++ L +F + S
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE--ELLEEFHITHLRKS---- 129
Query: 791 EKGINLSGGQKQRV 804
K +LSGG+++RV
Sbjct: 130 -KASSLSGGERRRV 142
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 42.0 bits (100), Expect = 6e-04
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L +++ VR G + ++G GAGK++L + + G + SG V
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV 57
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 42.5 bits (100), Expect = 6e-04
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 39/146 (26%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L+NIN+ + E + AI+G G GKS+ + L M ++ V T G I + Q + ++
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTL-NRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 749 T---LRDNI--VFGKTHVPRRYNKVI-DACALTP------DFEMLPAGDSTEIGEKGI-- 794
+ LR N+ VF K P + K I D P D + L EI EK +
Sbjct: 99 SVEELRTNVGMVFQK---PNPFPKSIYDNVTYGPKIHGIKDKKTL-----DEIVEKSLRG 150
Query: 795 ----------------NLSGGQKQRV 804
LSGGQ+QR+
Sbjct: 151 AAIWDELKDRLHDNAYGLSGGQQQRL 176
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 42.2 bits (100), Expect = 6e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L+++++ + G VA++G GAGKS+L+ L G ++ SG V
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 42.4 bits (100), Expect = 6e-04
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
+ +N +VREG + +G GAGK++ + L + SG G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 735 SIAFVPQQAWIQNA-TLRDNIV-FGKTH-VPRRYNKVIDACA--LTPDFEMLPAGDSTEI 789
SI VPQ A + T R+N+ G+ + +P+ + A L FE+ A D
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPK---DEAEERAEELLELFELGEAAD---- 119
Query: 790 GEKGINLSGGQKQRV 804
SGG ++R+
Sbjct: 120 -RPVGTYSGGMRRRL 133
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 42.3 bits (100), Expect = 7e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 683 AESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L +++ + EG V ++GS GAGKS+L++A+ G++ SG++
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 42.3 bits (100), Expect = 7e-04
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 41/167 (24%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
+ IEN T + T E L N+N+ + +G V ++G G+GKS+L+ L G +
Sbjct: 2 SIKIENLTHIYMEGTPFEKK----ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL 57
Query: 724 DKISGRVNTKG---------------SIAFVPQQAWIQ--NATLRDNIVFGKTHVPRR-- 764
SG++ G + V Q Q T+ +I FG P
Sbjct: 58 KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG----PINLG 113
Query: 765 ------YNKVIDACALTP-DFEMLPAGDSTEIGEKGINLSGGQKQRV 804
N+V A + D+E E LSGGQK+RV
Sbjct: 114 LSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-------LSGGQKRRV 153
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 42.1 bits (99), Expect = 8e-04
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 26/137 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L NI+ + EG+ VA+VG G+GKS+L+ + SG + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 735 -----SIAF-VPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
S+ F P+ +N L+D + FG P+ + D + G S +
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKD-VEFG----PKNFGFSEDEAKEKALKWLKKVGLSED 137
Query: 789 IGEKG-INLSGGQKQRV 804
+ K LSGGQ +RV
Sbjct: 138 LISKSPFELSGGQMRRV 154
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 42.2 bits (100), Expect = 8e-04
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 26/116 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
+ ++ ++EG + +VG G GKS+L + G + SG + +G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 749 TLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+D K R ++++ L +F + LSGGQ+QR+
Sbjct: 75 --KDITKLSKEERRERVLELLEKVGLPEEF----------LYRYPHELSGGQRQRI 118
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 42.3 bits (99), Expect = 8e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
P L+NIN+ +++G + I+G G+GKS+L L G + G+V G
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 41.9 bits (99), Expect = 8e-04
Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 47/170 (27%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L +EN + + + L+NIN+ + G VAI+G GAGKS+L+ + ++
Sbjct: 2 LEVENLSKVYPNGKQA--------LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE 53
Query: 725 KISGRV--------NTKGS--------IAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNK 767
SG + +G I + Q I+ T+ +N++ G+ Y
Sbjct: 54 PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG----YKP 109
Query: 768 VIDACALTPDFEMLPAGDSTE----IGEKGI---------NLSGGQKQRV 804
+ D + G+ LSGGQ+QRV
Sbjct: 110 TWRSL-----LGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV 154
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 41.7 bits (98), Expect = 9e-04
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP---QQAWI 745
L+ +N+ +++G ++++G G GKS+L++ + G SG V +G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 746 QN------ATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGG 799
QN T+R+NI V +K + ++ ++ + ++ LSGG
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD--KRPGQLSGG 118
Query: 800 QKQRV 804
KQRV
Sbjct: 119 MKQRV 123
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 42.3 bits (100), Expect = 0.001
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
L+ I+ + G + A++G GAGKS+L+ + G + SG + G+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 736 ---IAFVPQQAWI-QNATLRDNIVFGKTHVPRRYNKVID-----ACALTPD 777
I VPQ+ + N ++++NI+FG K+ C L D
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD 135
Score = 32.7 bits (75), Expect = 1.00
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 676 RNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
+ GEG +NI++ VR G ++ + G VGAG++ L L G GR+
Sbjct: 272 EDLTGEG------FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI 320
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 42.4 bits (100), Expect = 0.001
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
+ + ++ V EG + I+G G+GKS+LV L ++ G + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 735 ---SIAFVPQQ-AWIQNATLRDNIVFGK--THVPR--RYNKVIDACALTPDFEMLPAGDS 786
I+ V Q A + + T+ +N+ FG VP+ R + ++A L L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG----LEGYAD 159
Query: 787 TEIGEKGINLSGGQKQRV 804
E LSGG +QRV
Sbjct: 160 KYPNE----LSGGMQQRV 173
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 41.8 bits (98), Expect = 0.001
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI------------ 736
L+NI+ + G V ++G G+GKS+L+SA +NT+G I
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-------RLLNTEGDIQIDGVSWNSVPL 72
Query: 737 -----AF--VPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
AF +PQ+ +I + T R N+ KV + L E P +
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132
Query: 790 GEKGINLSGGQKQ 802
+ G LS G KQ
Sbjct: 133 VDGGCVLSHGHKQ 145
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 41.1 bits (97), Expect = 0.001
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 28/133 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-IAFVPQQA---- 743
+++ + G + I G GAGK++L+ L G + +G V +G I V +
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 744 -WI--QNA-----TLRDNIVF----GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGE 791
++ Q T +N+ F + + + L E LP G
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG------- 129
Query: 792 KGINLSGGQKQRV 804
LS GQ++RV
Sbjct: 130 ---QLSAGQQRRV 139
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 35/144 (24%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------S 735
L ++++ +R+G + + G GAGK++L+ L G + G+V G
Sbjct: 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73
Query: 736 IAFVPQQAWI--------QNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEM 780
+ + ++ + + T+ +N+ + + RR + L +
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA 133
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
P LSGG++QRV
Sbjct: 134 FP-----------EQLSGGEQQRV 146
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 42.3 bits (99), Expect = 0.001
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 737 AFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDF-EMLPAGDSTEIGEKGIN 795
+ V Q+ + N ++ +NI FGK R K A +F E LP T +G G +
Sbjct: 1299 SIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 796 LSGGQKQRV 804
LSGGQKQR+
Sbjct: 1359 LSGGQKQRI 1367
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQA 743
L+ I+ + +G +V +G GAGK++ + L G + SG V G VP
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LVP--- 85
Query: 744 WIQNATLRDNI--VFG 757
W + I VFG
Sbjct: 86 WKRRKKFLRRIGVVFG 101
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 40.5 bits (95), Expect = 0.002
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
+ NI++ V + ++ ++G GAGKS+L+ + G + SG +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 40.7 bits (96), Expect = 0.002
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
L+ +N+ V++G + AI+G G+GKS+L + G S V T G+I F
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG---HPSYEV-TSGTILF 61
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 41.4 bits (98), Expect = 0.002
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L +EN T ++ P +N+N+ + G +AI+G G GK++L+ L GE++
Sbjct: 320 LEVENLTKGFDNG---------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370
Query: 725 KISGRVN--TKGSIAFVPQ 741
SG V +I + Q
Sbjct: 371 PDSGTVKWSENANIGYYAQ 389
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 40.4 bits (95), Expect = 0.002
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 32/148 (21%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV 739
G G+ L +IN+ + G +V + G G+GK++L++ L G + R +GS+ +
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLT-LIGGL-----RSVQEGSLKVL 65
Query: 740 PQQAWIQNAT------LRDNI--VFGKTHVPR----RYNKVIDACALTPDF--------- 778
Q+ + A+ LR NI +F ++ R N V A L P+
Sbjct: 66 GQE--LYGASEKELVQLRRNIGYIFQAHNLLGFLTARQN-VQMALELQPNLSYQEARERA 122
Query: 779 -EMLPA-GDSTEIGEKGINLSGGQKQRV 804
ML A G + NLSGGQKQRV
Sbjct: 123 RAMLEAVGLGDHLDYYPHNLSGGQKQRV 150
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 39.9 bits (94), Expect = 0.002
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 26/136 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI-SGRVNTKGS------------ 735
L ++N+ + +G + AI+G G+GKS+L++ + G ++K SG+V G
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 736 -----IAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPA-GDSTE 788
+ ++ Q A I+N T+ +N+ + +Y K+ E L G + +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENL-----DLGLKYKKLSKKEKREKKKEALEKVGLNLK 127
Query: 789 IGEKGINLSGGQKQRV 804
+ +K LSGG++QRV
Sbjct: 128 LKQKIYELSGGEQQRV 143
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 40.5 bits (94), Expect = 0.003
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 41/163 (25%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L +EN F +E+ ++ L ++ + +G V+I+G G+GKS+ + G +
Sbjct: 5 LEVENLVFKYEKESDVN------QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58
Query: 725 KISGRVNTKGSIAFVPQQAW---------IQN-------ATLRDNIVFGKTH--VPRRYN 766
+ G+V G + W QN AT+ D++ FG + +PR
Sbjct: 59 EFEGKVKIDGE-LLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEM 117
Query: 767 -KVIDACALTP---DFEML-PAGDSTEIGEKGINLSGGQKQRV 804
K +D L DF+ PA LSGGQKQRV
Sbjct: 118 IKRVDEALLAVNMLDFKTREPA-----------RLSGGQKQRV 149
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 39.9 bits (94), Expect = 0.003
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA 737
T G+G P L++ + V+ G +V ++G G+G S+L+ AL + G V+ +G I
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIH 68
Query: 738 F 738
+
Sbjct: 69 Y 69
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 41.2 bits (97), Expect = 0.003
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728
G E L+ I++ + G +VAIVG+ G+GKS+L++ L G +DK +
Sbjct: 17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTS 62
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 39.9 bits (94), Expect = 0.003
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 26/133 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------I 736
L +++ + G + ++G GAGK++L+ L SG + G I
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 737 AFVPQQ-AWIQNATLR---DNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
++PQ+ N T+R D I + K + +D E+L + + +K
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVD--------EVLELVNLGDRAKK 126
Query: 793 GIN-LSGGQKQRV 804
I LSGG ++RV
Sbjct: 127 KIGSLSGGMRRRV 139
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 39.8 bits (93), Expect = 0.003
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 30/131 (22%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--RVNTKGSIAFVPQQAWIQ---- 746
++ V +G +VAI+G GAGKS+L++ + G ++ SG +VN + P Q +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 747 ------NATLRDNIVFG-----KTHVPRRYNKVIDACALTPD--FEMLPAGDSTEIGEKG 793
+ T+R NI G K + ++ V A + + LP
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------- 127
Query: 794 INLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 128 -QLSGGQRQRV 137
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 39.7 bits (93), Expect = 0.003
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------SI 736
++ ++ RVR G + ++G GAGK++ + L + SGR G I
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 737 AFVPQQAWIQNA-TLRDNI-VFGKTH-VPRR 764
V Q + + T +N+ + + + VP
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGA 106
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 40.0 bits (94), Expect = 0.003
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 32/152 (21%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
PL++ + + T L +++ + G VA+VG G GKS+L+ L G +
Sbjct: 12 PLLLNAVSKRYGERT---------VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG-L 61
Query: 724 DKISGRVNTKGSIAFVPQQAWIQNATLRDNI--VFGKTH-VPRRYNKVIDACAL------ 774
+ S G+ A R++ +F +P + KVID L
Sbjct: 62 ETPSAGELLAGTAPL---------AEAREDTRLMFQDARLLP--WKKVIDNVGLGLKGQW 110
Query: 775 -TPDFEMLPA-GDSTEIGEKGINLSGGQKQRV 804
+ L A G + E LSGGQKQRV
Sbjct: 111 RDAALQALAAVGLADRANEWPAALSGGQKQRV 142
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 40.6 bits (95), Expect = 0.004
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG----------------EMDKISGRVNT 732
L I++ VR G V + G GAGKS+L+ L G + + R
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 733 KGSIAFVPQQ-AWIQNATLRDNIVFGK--THVPRR--YNKVIDAC-ALTPDFEMLPAGDS 786
+ I + Q+ + ++ +NI G T R YN + L + ++ +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 787 TEIGEKGINLSGGQKQRVK 805
+G+ G GGQ+Q V+
Sbjct: 137 RPVGDYG----GGQQQLVE 151
Score = 31.7 bits (72), Expect = 2.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
+++ +R G ++ + G VGAG++ LV AL G
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 39.9 bits (93), Expect = 0.004
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVP----- 740
P L+++ ++ G V I G G+GKSSL A +D G++ G I+ +P
Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94
Query: 741 -------QQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793
Q + + ++R N+ R + ++ L + LP G + E G
Sbjct: 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGG 154
Query: 794 INLSGGQKQ 802
N S GQ+Q
Sbjct: 155 ENFSVGQRQ 163
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 39.9 bits (94), Expect = 0.004
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 27/138 (19%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
+ ++++ V G +V ++G GAGK++ + G + SG++
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 735 --SIAFVPQQAWI-QNATLRDNI-----VFGKTHVPRRYNKVIDACALTPDFEMLPAGDS 786
I ++PQ+A I + T+ DNI + K ++ + + AL +F + DS
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD--LKKAERKEELDALLEEFHITHLRDS 135
Query: 787 TEIGEKGINLSGGQKQRV 804
K +LSGG+++RV
Sbjct: 136 -----KAYSLSGGERRRV 148
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 39.8 bits (93), Expect = 0.004
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 38/148 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD--------KISGRVNTKGSI---- 736
L+++++R+ G + A++G GAGKS+L+ AL G++ +++G V G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 737 ---------AFVPQQAWIQNA---TLRDNIVFGK-THVPR-----RYNKVIDACALTPDF 778
A +PQ A Q A + R+ ++ G+ H R + I AL
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA--- 131
Query: 779 EMLPAGDSTEIGEKGINLSGGQKQRVKW 806
AG + +G LSGG+ RV++
Sbjct: 132 ---LAGATALVGRDVTTLSGGELARVQF 156
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 39.8 bits (93), Expect = 0.004
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L+ IN+ +++G + AI+G GAGKS+L L G + SGR+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 39.7 bits (93), Expect = 0.004
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 668 ENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727
+N ++ +E N E L ++N+ V++G + I+G G+GKS++ + +
Sbjct: 8 KNVSYKYESNEEST---EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 728 GRVNTKGSIAFVPQQAW---------IQN------ATL-RDNIVFGKTHV---PRRYNKV 768
G+V G + W QN AT+ +++ FG ++ P +
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 769 IDACALTPDFEMLPAGDSTEIGEKGIN-LSGGQKQRV 804
+D L E + LSGGQKQRV
Sbjct: 125 VDES--------LKKVGMYEYRRHAPHLLSGGQKQRV 153
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 39.8 bits (94), Expect = 0.005
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L N+++ + G + ++G+ GAGKS+L+
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLI 48
Score = 31.3 bits (72), Expect = 2.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 795 NLSGGQKQRV 804
LSGGQKQRV
Sbjct: 140 QLSGGQKQRV 149
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 39.9 bits (94), Expect = 0.005
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
L N++++VR G +V++ G GAGKS+L+ L G
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
Score = 31.8 bits (73), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
+++ +R G ++ I G VGAG++ LV L G
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 39.0 bits (91), Expect = 0.006
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSAL-CGEMDKISGRVNTKGS---IAFVPQQA 743
L +I + EG + ++G GAGKSSL+ L EM + SG +N G+ + P
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDK 75
Query: 744 WIQNATLRDNI--VFGKTHV-------------PRRYNKVIDACALTPDFEMLPAGDSTE 788
I++ LR N+ VF + ++ P R + AL ++L
Sbjct: 76 AIRD--LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133
Query: 789 IGEK-GINLSGGQKQRV 804
++ ++LSGGQ+QRV
Sbjct: 134 YADRYPLHLSGGQQQRV 150
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 39.0 bits (91), Expect = 0.006
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 32/140 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD---KISGRVNTKGS-IAFVP---Q 741
L N+N + +G +V ++G G GKS+L+S + G + +G + + +P +
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 742 QAWI--QNATLRD------NIVFG-----KTHVPRR-YNKVIDACALTPDFEMLPAGDST 787
Q I Q+A L N++F K + R N ++ L F PA
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---- 133
Query: 788 EIGEKGINLSGGQKQRVKWQ 807
LSGGQ+ RV
Sbjct: 134 -------TLSGGQRARVALL 146
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 39.5 bits (93), Expect = 0.006
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGE 722
+ G VA++GS G GKS+LV+AL GE
Sbjct: 192 LSGGKTVALLGSSGVGKSTLVNALLGE 218
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 39.3 bits (92), Expect = 0.007
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 654 LTGVYS-SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGK 712
L+ Y + +P + + + R S +Q+I+ + +G +V +G+ GAGK
Sbjct: 9 LSKNYPVAIKEPGLKGSLNHFFHRKER-----SIEAVQDISFEIPKGEIVGFLGANGAGK 63
Query: 713 SSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFG 757
S+ + L G + SG+V G F ++ ++++ L V G
Sbjct: 64 STTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL----VMG 104
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 39.6 bits (93), Expect = 0.007
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 30/132 (22%)
Query: 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----------------- 734
N + + A+ G G+GK+SL++ + G GR+ G
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 735 SIAFVPQQAWI-QNATLRDNIVFGKTHVPRRY-NKVIDACALTPDFEMLPAGDSTEIGEK 792
I +V Q A + + T+R N+ +G R ++++ + + P
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP---------- 126
Query: 793 GINLSGGQKQRV 804
LSGG+KQRV
Sbjct: 127 -GTLSGGEKQRV 137
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 39.2 bits (91), Expect = 0.007
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 31/142 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L+ ++M + + + AI+G G GKS+ + L M+++ V +G + F Q + +
Sbjct: 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 749 TLR---------------------DNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGD-- 785
L DN+ +G V R ID + L D
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESA----LKDADLW 137
Query: 786 ---STEIGEKGINLSGGQKQRV 804
+I + ++LSGGQ+QR+
Sbjct: 138 DEIKHKIHKSALDLSGGQQQRL 159
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.8 bits (90), Expect = 0.009
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 35/144 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG-------------------- 728
L+N+N+ + + ++ A++G G GKS+ + L D I G
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 729 RVNTKGSIAFVPQQAWIQNATLRDNIVFG--------KTHVPRRYNKVIDACALTPDFEM 780
V + + V Q+ ++ DN+ +G + + R + + A AL + +
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK- 137
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
++ + + LSGGQ+QR+
Sbjct: 138 ------DKLDKSALGLSGGQQQRL 155
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 38.8 bits (90), Expect = 0.009
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 29/166 (17%)
Query: 660 SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVS-- 717
F+ ++++N ++T+ + T E L N ++ ++ + ++G+ G+GKS+++
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFK----ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLT 57
Query: 718 ----------------ALCGEMDKISGRVNTKGSIAFV---PQQAWIQNATLRDNIVFGK 758
A+ + KI + I V P+ Q T+ +I FG
Sbjct: 58 NGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGP 116
Query: 759 THVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
++ + LP + LSGGQK+RV
Sbjct: 117 VNLGENKQEAYKKVPELLKLVQLP---EDYVKRSPFELSGGQKRRV 159
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 39.3 bits (92), Expect = 0.009
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 35/143 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK---------ISGRVNTKGSI--- 736
L+N++ + G L+A++GS GAGK++L++AL K ++G +
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 737 -AFVPQQ-AWIQNATLRDNIVFGKTHV--PRRYNK---------VIDACALTPDFEMLPA 783
A+V Q +I T+R++++F + H+ PRR K V+ A L
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMF-QAHLRMPRRVTKKEKRERVDEVLQALGL------RKC 153
Query: 784 GDSTEIGEKGI--NLSGGQKQRV 804
+ T IG G LSGG+++R+
Sbjct: 154 AN-TRIGVPGRVKGLSGGERKRL 175
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 38.7 bits (91), Expect = 0.009
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN-TKGSIAF 738
L ++++ V G L I+G GAGK+++ MD I+G+ +GS+ F
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTM-------MDVITGKTRPDEGSVLF 61
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 39.1 bits (92), Expect = 0.010
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSALCGE 722
+REG V I+G GKSSL++AL G
Sbjct: 213 ILREGLKVVIIGRPNVGKSSLLNALLGR 240
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 39.1 bits (91), Expect = 0.010
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFV 739
L NI+ V EG +V I+G G+GKS+L + + G G V+ KGS A +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI 90
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 39.4 bits (93), Expect = 0.010
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ 741
+ EG ++ IVG G GK++ L G + G V+ + I++ PQ
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ 407
Score = 30.9 bits (71), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723
+EG + I+G G GK++ V L GE+
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGEL 123
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 38.3 bits (90), Expect = 0.010
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
+ ++++ VR G +V ++G GAGK++L + + G SG V +G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 38.4 bits (89), Expect = 0.010
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 35/144 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGS-------- 735
L+NIN+ + E + AI+G G GKS+ + L + K++G +N GS
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 736 -------IAFVPQQAWIQNATLRDNIVFG--------KTHVPRRYNKVIDACALTPDFEM 780
I V Q+ ++ DN+ +G K + K + AL + +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK- 146
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
+ + ++LSGGQ+QR+
Sbjct: 147 ------DRLHTQALSLSGGQQQRL 164
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 38.2 bits (89), Expect = 0.012
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF--------- 738
L ++++ + A++G G+GKS+L+ ++ M+ ++ V GSI +
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSI-NRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 739 ------------VPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDS 786
V QQ ++ +N+V+G R + D L E G S
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYG-----LRLKGIKDKQVLDEAVEKSLKGAS 133
Query: 787 T------EIGEKGINLSGGQKQRV 804
+ + + LSGGQ+QRV
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRV 157
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 38.4 bits (90), Expect = 0.013
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 34/139 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
+ ++N+ + EG + ++G G+GK++ + + ++ SG + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 736 IAFVPQQ-AWIQNATLRDNIVF-------GKTHVPRRYNKVIDACALTP-DF-EMLPAGD 785
I +V QQ + T+ +NI K + +R ++++D L P ++ + P
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-- 134
Query: 786 STEIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 135 ---------ELSGGQQQRV 144
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 38.9 bits (92), Expect = 0.013
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSALCGE 722
+REG V I G GKSSL++AL GE
Sbjct: 211 ILREGLKVVIAGRPNVGKSSLLNALLGE 238
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 38.0 bits (89), Expect = 0.013
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVP------- 740
L +++ ++EG ++G G GK++L+ + G SG + G I +P
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 741 ---QQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN- 795
Q A + T+ +NI FG + + I E L + +
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLR-LKKLPKAEIKERVA----EALDLVQLEGYANRKPSQ 130
Query: 796 LSGGQKQRV 804
LSGGQ+QRV
Sbjct: 131 LSGGQQQRV 139
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 38.2 bits (89), Expect = 0.015
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
+E+ F ++ T+ L+ +++ + EG+ A++G GAGKS+L+ L G
Sbjct: 7 VEDLHFRYKDGTKA--------LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58
Query: 727 SGRVNTKGSIAFVPQQAWIQN---------------ATLRDNIVFG-------KTHVPRR 764
GRV G + W+++ +T+ D++ FG K V RR
Sbjct: 59 RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR 118
Query: 765 YNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ + A + DF P +LS GQK+RV
Sbjct: 119 VEEALKAVRMW-DFRDKPP----------YHLSYGQKKRV 147
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 37.8 bits (88), Expect = 0.015
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 683 AESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDKISGRVNTKG 734
E L+ +N+ VR G + AI+G G+GKS+L + L G + + G V KG
Sbjct: 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 37.8 bits (88), Expect = 0.015
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
P L+N+++ V G VA+ G GAGKS+L+ +L SGR+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 38.3 bits (89), Expect = 0.015
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVP----- 740
+ ++++ + +G + A++G+ G GKS+L+ L G +G++ G ++ VP
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92
Query: 741 ------QQAWIQNATLRDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI-GE 791
A + T+ NI FG + +P+ ++ EML E
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPK--AEIASRVN-----EMLGLVHMQEFAKR 145
Query: 792 KGINLSGGQKQRV 804
K LSGGQ+QRV
Sbjct: 146 KPHQLSGGQRQRV 158
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 38.2 bits (89), Expect = 0.015
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 34/126 (26%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWI------------QNAT 749
AI G G+GK++L+ + G G + G F ++ Q A
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 750 L------RDNIVFGKTHV-----PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSG 798
L R N+ +G + +VI+ + LP LSG
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG-----------RLSG 134
Query: 799 GQKQRV 804
G+KQRV
Sbjct: 135 GEKQRV 140
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 38.1 bits (89), Expect = 0.015
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI 736
L +++ V G L ++G GAGK++L+ + G+ G V G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 38.4 bits (89), Expect = 0.017
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDKISGRVNTKGS----------- 735
L ++++ + G L+A++G G GK++L+ A+ G + ++GR+
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 736 IAFVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDST 787
+A + Q A + + DN+ FG K + R + L LPA
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---- 136
Query: 788 EIGEKGINLSGGQKQRV 804
LSGG +QR+
Sbjct: 137 -------QLSGGMQQRI 146
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 37.8 bits (88), Expect = 0.018
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 21/135 (15%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--------RVN-TKGSIA 737
L NI++ + +G +V I+G G+GKS+L+ + ++++I+ +VN K
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDGLKVNDPKVDER 73
Query: 738 FVPQQAWI--------QNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
+ Q+A + + T +N++FG V R +K +A + + G +
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRV-RGASKE-EAEKQAREL-LAKVGLAERA 130
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 131 HHYPSELSGGQQQRV 145
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 37.6 bits (88), Expect = 0.018
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 37/142 (26%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L +++ V G ++AI+G G+GKS+L+ + G + G + G
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 735 --SIAFVPQQ-AWIQNATLRDNIVFG---KTHVPRR-YNKV----IDACALTPD-FEMLP 782
+ + QQ A + T+ +N+ F T +P ++ ++ L ++ P
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143
Query: 783 AGDSTEIGEKGINLSGGQKQRV 804
+ LSGG ++RV
Sbjct: 144 S-----------ELSGGMRKRV 154
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.6 bits (87), Expect = 0.020
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGSIAFVPQQA 743
L+ I++ + + A++G G GKS+ + L D I+G V+ +G + P +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 744 WIQ---------------NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+Q ++ +N+++G + V+D A+ + D +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDE-AVETSLKQAAIWDEVK 139
Query: 789 --IGEKGINLSGGQKQRV 804
+ E ++LSGGQ+QRV
Sbjct: 140 DHLHESALSLSGGQQQRV 157
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 36.7 bits (86), Expect = 0.020
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALCGE 722
REG V I G GKSSL++AL G
Sbjct: 1 REGIKVVIAGKPNVGKSSLLNALAGR 26
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 37.2 bits (86), Expect = 0.021
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 35/140 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG---------SIAFV 739
LQ + +R G + + G GAGKS+L+ +CG +G++ G + F+
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 740 PQQAWI---QNATLRDNIVFGKTHVP------------RRYNKVIDACALTPDFEMLPAG 784
+Q + + L D V+ +P RR + +D L + P
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-- 135
Query: 785 DSTEIGEKGINLSGGQKQRV 804
I LSGG++QRV
Sbjct: 136 ---------IQLSGGEQQRV 146
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 37.1 bits (87), Expect = 0.022
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
++ + G LV I G GAGK+SL+ L G +G V +G
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG 62
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 37.9 bits (88), Expect = 0.025
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--EMDKISGRV 730
L+NI+ + EG ++ I+G GAGKS L+ L G + + SGR+
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59
Score = 35.5 bits (82), Expect = 0.14
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
N+++ V+EG + IVG+ GAGK++L + G ++ SG VN +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 37.2 bits (86), Expect = 0.026
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW---- 744
++N+ M++ + + AI+G G GK++L+ ++ D I G +G I F Q +
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPG-FRVEGKIYFKGQDIYDPQL 77
Query: 745 ------------IQNAT-----LRDNIVFG-KTHVPRRYNKVIDACALTPDFEMLPAGDS 786
Q T + DN+ FG + H + +K+ + L
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK 137
Query: 787 TEIGEKGINLSGGQKQRV 804
+E+ + G LSGGQ+QR+
Sbjct: 138 SELNKPGTRLSGGQQQRL 155
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 37.8 bits (88), Expect = 0.026
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L N+N++VR ++ A++G GAGKS+L+ L G K SG +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI 55
Score = 35.1 bits (81), Expect = 0.19
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
P++++++ + +G ++ I G VGA ++ +V L G +K +G + G
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 37.2 bits (87), Expect = 0.027
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L + N + + G G + L N+++ + G + IVG G+GKS+L L G ++
Sbjct: 4 LSVRNLSIVY-----GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG-LE 57
Query: 725 KISGRVNTKGSIAF 738
K + GSI
Sbjct: 58 K-----PSSGSILL 66
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 37.0 bits (86), Expect = 0.027
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--IAFVPQQAWIQ 746
L ++++ ++ G ++ ++G GAGKS+LV + G + G + G I +VPQ+ ++
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL- 78
Query: 747 NATL 750
+ TL
Sbjct: 79 DTTL 82
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 37.4 bits (86), Expect = 0.028
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK--------------- 733
L +I++ V++G+ A++G G+GKS+L+ L G + G+V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 734 -----GSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
G + P+ + L+D + FG P+ + + ++ G + E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKD-VAFG----PQNFGIPKEKAEKIAAEKLEMVGLADE 136
Query: 789 IGEKG-INLSGGQKQRV 804
EK LSGGQ +RV
Sbjct: 137 FWEKSPFELSGGQMRRV 153
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 37.1 bits (86), Expect = 0.029
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 33/138 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L NIN + +A++G GAGKS+L G + SG V +G
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79
Query: 736 --IAFVPQQAWIQNATLRDNIVFGKTH-------VPRRYNKVIDACALTPDFEMLPAGDS 786
+ F I + T+ +I FG + V R + + L + +P
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH--- 136
Query: 787 TEIGEKGINLSGGQKQRV 804
+LSGG+K+RV
Sbjct: 137 --------HLSGGEKKRV 146
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 37.3 bits (87), Expect = 0.031
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L ++N+ + G+ VAI+G G+GKS+L+ L G + SG V
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV 64
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 37.6 bits (87), Expect = 0.031
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
L I++R+ +G +V IVG G GKS+L CG
Sbjct: 354 EGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 36.7 bits (85), Expect = 0.033
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735
G+G L + + V+ G +A++G G+GKS+L++ L G D SG V+ G
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ 72
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 37.1 bits (86), Expect = 0.034
Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 39/146 (26%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
P L N+++ + EG V ++G G GKS+L L G G V+ +G
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 736 --------------IAFVPQQA--WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPD-F 778
A P+ I LR ++ R +++D L +
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA 144
Query: 779 EMLPAGDSTEIGEKGINLSGGQKQRV 804
+ LP LSGGQ QR+
Sbjct: 145 DKLPR-----------QLSGGQLQRI 159
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 37.5 bits (87), Expect = 0.034
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
L+++N+ V G + A++G GAGKS+L+ L G + G +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN 66
Score = 32.8 bits (75), Expect = 0.84
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
++I+ V G ++ G VG+G++ L++ L G + G + G
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 37.6 bits (88), Expect = 0.035
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731
P L N + + + V +VG GAGKS+L+ L GE+ GR+
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61
Score = 36.1 bits (84), Expect = 0.11
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAFVPQ--QAW 744
+++ + +V+ G +A++G G GK++L+ + G++ SGR++ TK +A+ Q
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAEL 394
Query: 745 IQNATLRDNIVFGKTHV 761
T+ DN+ GK V
Sbjct: 395 DPEKTVMDNLAEGKQEV 411
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 36.7 bits (85), Expect = 0.038
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-------------NTKG 734
TL++++ + +G +IVG G+GKS++ + G SG + +
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83
Query: 735 SIAFVPQQAWIQ--NATLRDNIVFG-KTH-VPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
I V Q Q + ++ ++ FG + H VP + AL +ML D
Sbjct: 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALK-QVDMLERADY---- 138
Query: 791 EKGINLSGGQKQRV 804
+ LSGGQKQRV
Sbjct: 139 -EPNALSGGQKQRV 151
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 36.8 bits (85), Expect = 0.044
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 36/141 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL-----------------CGEMDKISGRVN 731
+ + ++ + +G + I+G G+GKS+ V L + + R
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 732 TKGSIAFVPQQ-AWIQNATLRDNIVFG----KTHVPRRYNKVIDACALT--PDFE-MLPA 783
+ I V QQ A + T+ N G R K ++ L ++E P
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 784 GDSTEIGEKGINLSGGQKQRV 804
LSGG +QRV
Sbjct: 129 -----------ELSGGMQQRV 138
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 36.5 bits (85), Expect = 0.045
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
L ++++ + G + A++G G GKS+L+ + SG V
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 736 IAFVPQQAWI-QNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEML--PAGDSTEIGE- 791
+A +PQ + T+R+ + +G++ + + L+ + A + T I
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGR------LSAEDNARVNQAMEQTRINHL 131
Query: 792 ---KGINLSGGQKQRV 804
+ +LSGGQ+QR
Sbjct: 132 ADRRLTDLSGGQRQRA 147
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 36.5 bits (85), Expect = 0.045
Identities = 36/138 (26%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 690 QNINMR----VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV------NTKGSIAFV 739
++ MR V G VAI+G GAGKS+L++ + G + SG + +T +
Sbjct: 12 HHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRR 71
Query: 740 PQQAWIQ------NATLRDNIVFGK------THVPRRYNKVI-DACALTPDFEMLPAGDS 786
P Q + T+ NI G R I + LP
Sbjct: 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--- 128
Query: 787 TEIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 129 --------QLSGGQRQRV 138
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 36.3 bits (84), Expect = 0.046
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ-N 747
L +I+++ EG ++ +VG G+GKS+L + + G + G+V+ G ++ + A +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 748 ATLRDNIVF 756
T +NI F
Sbjct: 100 LTGIENIEF 108
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 34.7 bits (80), Expect = 0.046
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735
V ++G G+GKSSL+S L G + + +G
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGG-EFPPEPLEIQGD 34
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 35.5 bits (82), Expect = 0.050
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 703 AIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAFVPQQAWIQNATLRDNIVF 756
+VG G GKSSL++AL G V T+ +V + + +V
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV-----KELDKGKVKLVL 51
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 36.2 bits (83), Expect = 0.059
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 28/139 (20%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV---SALCGEMDKISGRVNTKG----------- 734
L +INM++ + + A++G+ G GKS+ + + + ++ KI G V +G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 735 --SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVI---DACALTPDFEMLPAGDSTEI 789
++ V QQ + ++ +NI ++ P+ + + + AL D + G E+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENI----SYAPKLHGMIKNKDEEEALVVDC-LQKVGLFEEV 132
Query: 790 GEK----GINLSGGQKQRV 804
+K + LSGGQ+QR+
Sbjct: 133 KDKLKQNALALSGGQQQRL 151
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 36.3 bits (84), Expect = 0.062
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
++N ++T++ T EG L ++N+ + +G+ A +G G+GKS+++ L G
Sbjct: 5 LQNVSYTYQAGTPFEG----RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT 60
Query: 727 SGRV 730
G V
Sbjct: 61 QGSV 64
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 34.9 bits (81), Expect = 0.066
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 703 AIVGSVGAGKSSLVSALCGEMDKISGRVN--TKGSIAF 738
AI G GKSSL++AL G+ I + T+ +
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRK 38
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 36.1 bits (84), Expect = 0.073
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 24/132 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQ----- 742
+ N+++ + G + ++G G GK++++ + G SGR+ G I VP +
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89
Query: 743 ------AWIQNATLRDNIVFG----KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
A + T+ +N+ FG KT +V++A + E K
Sbjct: 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF--------AQRK 141
Query: 793 GINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 142 PHQLSGGQQQRV 153
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 35.7 bits (82), Expect = 0.077
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-------------I 736
+N+ + + +G AI+G G GKS+L+ L M G V G I
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 737 AFVPQQAWIQ-NATLRDNIVFGK-THVP--RRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
+ Q A + T+++ + G+ H P R+ K D A+T + + A T + ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKE-DEEAVT---KAMQATGITHLADQ 139
Query: 793 GIN-LSGGQKQR 803
++ LSGGQ+QR
Sbjct: 140 SVDTLSGGQRQR 151
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 36.1 bits (84), Expect = 0.080
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729
TLQ ++ + G A VG+ G+GKS+L AL GE+ +SG
Sbjct: 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE 59
Score = 30.8 bits (70), Expect = 3.5
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722
P L N++ +V G IVG GAGKS+L+S + G+
Sbjct: 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 35.5 bits (83), Expect = 0.083
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
+G +VG G GKS+L++AL E+ +G ++ K
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLPELVLATGEISEK 119
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 35.2 bits (82), Expect = 0.087
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 33/134 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWI--- 745
++ + G + + G G+GK++L+ + G + +G + G P A
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 746 ---QNA-----TLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIG 790
+NA T+ +N+ F + + ++A L LP G
Sbjct: 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAA----ALEAVGL-APLAHLPFG------ 126
Query: 791 EKGINLSGGQKQRV 804
LS GQK+RV
Sbjct: 127 ----YLSAGQKRRV 136
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 35.2 bits (81), Expect = 0.097
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 22/133 (16%)
Query: 689 LQNINMR----VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQA 743
M +G + AIVG G+GKS+L++ + G SGRV G + P
Sbjct: 10 YGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD 69
Query: 744 WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLP------AGDSTEIGEKGI--- 794
+ ++N +F V + L+P ++ +G G+
Sbjct: 70 RPVSMLFQENNLFAHLTVEQNV-----GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR 124
Query: 795 ---NLSGGQKQRV 804
LSGG++QRV
Sbjct: 125 LPGELSGGERQRV 137
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 34.9 bits (80), Expect = 0.098
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
P LQ I+ + G L+ + GS GAGK++L+ + G ++ G + +
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74
Query: 735 SIAFVPQQAWIQ-NATLRDNIVF 756
+ FV ++ I TLR+N ++
Sbjct: 75 QLCFVGHRSGINPYLTLRENCLY 97
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 33.8 bits (78), Expect = 0.10
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISG 728
VA+VG GKS+L++AL G I
Sbjct: 2 VALVGRPNVGKSTLINALTGAKVAIVS 28
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 35.9 bits (83), Expect = 0.11
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 660 SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
SF P + N E+ + G G L +I + + G+ + ++G GAGKS+L+ L
Sbjct: 301 SFRAPESLPNPLLKMEKVSAGYGDRI--ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLL 358
Query: 720 CGEMDKISGRV 730
GE+ +SG +
Sbjct: 359 AGELAPVSGEI 369
Score = 34.8 bits (80), Expect = 0.27
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L N + G V +VG G GKS+L++ L E+ G G+ AW+
Sbjct: 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQL----AWVNQE 72
Query: 749 T 749
T
Sbjct: 73 T 73
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 34.3 bits (78), Expect = 0.11
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
G ++ IVG G+GK++L AL E+ G V
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV 33
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 35.1 bits (81), Expect = 0.12
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 31/141 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT-----KGSIAFVPQQA 743
L I++ V+ G +VAI+G G+GK++L+ + +G + + + Q+
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78
Query: 744 WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFE------MLPAGDSTEIGEK----- 792
I+ LR ++ F V + +N L E P ++T +
Sbjct: 79 LIRQ--LRQHVGF----VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV 132
Query: 793 GIN---------LSGGQKQRV 804
G+ LSGGQ+QRV
Sbjct: 133 GLAGKETSYPRRLSGGQQQRV 153
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 35.4 bits (82), Expect = 0.12
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS---------IAFV 739
+ NI+ V G + ++G GAGK++ + G ++ G + G I ++
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 740 PQQ-AWIQNATLRDNIVF 756
P++ T+ D + +
Sbjct: 78 PEERGLYPKMTVEDQLKY 95
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 36.0 bits (84), Expect = 0.12
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVS 717
L+NI++ + G + G G+GKS+L++
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
Score = 32.2 bits (74), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+NI++ + LV I G G+GKSSL
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLA 43
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 35.0 bits (81), Expect = 0.12
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 42/148 (28%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
+ N+N+ + +G + ++G G+GK++ + + ++ SG + G
Sbjct: 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71
Query: 735 ----SIAFVPQQAWI-QNATLRDNIVFGKTHVP--------RRYNKVIDACALT--PDFE 779
I +V QQ + + T+ +NI VP + + + AL E
Sbjct: 72 ELRRKIGYVIQQIGLFPHMTVEENIAL----VPKLLKWPKEKIRERADELLALVGLDPAE 127
Query: 780 ML---PAGDSTEIGEKGINLSGGQKQRV 804
P LSGGQ+QRV
Sbjct: 128 FADRYPH-----------ELSGGQQQRV 144
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 34.3 bits (80), Expect = 0.12
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+AI+G GKSSL++AL GE
Sbjct: 5 IAIIGRPNVGKSSLLNALLGE 25
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.0 bits (81), Expect = 0.13
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 39/144 (27%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L N+++ ++ G VA++G G GKS+L L G G V+ +G
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 735 ----------SI-AFVPQQA--WIQNATLRDNIVFGKTHVPRRYNKVIDACALTP-DFEM 780
SI A P++ I LR + K R ++++ A L +
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDK 147
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
P LSGGQ QRV
Sbjct: 148 RPP-----------QLSGGQLQRV 160
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 35.8 bits (83), Expect = 0.13
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+NI + + G I G G+GKS+L+
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLI 651
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 34.1 bits (79), Expect = 0.13
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724
+G + G G GKS+L++AL E+D
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLPELD 60
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 34.7 bits (80), Expect = 0.14
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
Q++N+ ++ G ++A+VG G+GKS A+ G + G T G I
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP--GLTQTSGEILL 49
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 34.6 bits (80), Expect = 0.15
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
L +++ VR G VA++G GAGKS+L S L G+++ G
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 35.3 bits (82), Expect = 0.16
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 23/97 (23%)
Query: 676 RNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG- 734
+G G P I+ VR G +V + G VGAG+S L+ L G + +G+V G
Sbjct: 261 DGLKGPGLREP-----ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK 315
Query: 735 -------------SIAFVP----QQAWIQNATLRDNI 754
I P + I ++ DNI
Sbjct: 316 PIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNI 352
Score = 34.9 bits (81), Expect = 0.19
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
L +I+ R G + A++G GAGKS+L+ L G +G + G
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG 65
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 35.0 bits (82), Expect = 0.16
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+AI+G GKSSL++AL GE
Sbjct: 176 IAIIGRPNVGKSSLINALLGE 196
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 34.6 bits (79), Expect = 0.16
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L+NINM V E + A++G G GKS+ + M + + +G I P I +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCF-NRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 749 T-------LRDNIVFGKTH------------------VPRRY---NKVIDACALTPDFEM 780
+R ++VF K + V RR +V +A ++
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
+ +G+ NLSGGQ+QR+
Sbjct: 151 V----KDRLGDLAFNLSGGQQQRL 170
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 34.8 bits (80), Expect = 0.18
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L + N + T+ T ++ ++ ++ +REG +AI+G G+GKS+L L G ++
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 725 KISGRV 730
SG +
Sbjct: 65 PTSGEI 70
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 34.0 bits (78), Expect = 0.19
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 25/130 (19%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------SI 736
++ + G + + G G+GK++L+ L G ++GRV G +
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75
Query: 737 AFVPQQAWIQNA-TLRDNIVF-GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794
++ I+ ++ +N+ F H + + + L FE P
Sbjct: 76 LYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVA---------- 124
Query: 795 NLSGGQKQRV 804
LS GQ++RV
Sbjct: 125 QLSAGQQRRV 134
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 34.6 bits (79), Expect = 0.20
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 37/145 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV------------SALCGEMDKISGR-VNTKG- 734
L+ I+M + E ++VA +G G GKS+ + + L GE+ +I GR + KG
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIYDKGV 77
Query: 735 -------SIAFVPQQAWIQNATLRDNIVFG--------KTHVPRRYNKVIDACALTPDFE 779
++ V Q+ ++ +N+ +G + +R + + AL + +
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK 137
Query: 780 MLPAGDSTEIGEKGINLSGGQKQRV 804
++ E LSGGQ+QR+
Sbjct: 138 -------DKLKESAFALSGGQQQRL 155
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 34.6 bits (79), Expect = 0.20
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 34/143 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--------- 734
L+N++M++ + ++ A++G G GKS+ + L D +I G+V+ +G
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRY---NKVIDACALTPDFEMLPAGD 785
++ V Q+ ++ DN+ +G PR + K +D + + A
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYG----PRIHGANKKDLDGVV---ENALRSAAL 140
Query: 786 STEIGEK----GINLSGGQKQRV 804
E ++ ++LSGGQ+QR+
Sbjct: 141 WDETSDRLKSPALSLSGGQQQRL 163
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 34.7 bits (81), Expect = 0.20
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+AI+G GKS+LV+AL GE
Sbjct: 175 IAIIGRPNVGKSTLVNALLGE 195
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 34.5 bits (80), Expect = 0.21
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI 736
+A+VG G+GK++L AL +G ++ G +
Sbjct: 2 IALVGHSGSGKTTLAEALLYA----TGAIDRLGRV 32
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 34.8 bits (81), Expect = 0.21
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 30/121 (24%)
Query: 703 AIVGSVGAGKSSLVSALCG----EMDKIS--GRV--NTKGSIAFVPQQAWI----QNATL 750
AI G GAGK+SL++A+ G + +I GRV + + I P++ I Q+A L
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 751 ------RDNIVFGKTHV-PRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803
R N+ +G +++K++ + P + P +LSGG+KQR
Sbjct: 88 FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQR 136
Query: 804 V 804
V
Sbjct: 137 V 137
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 34.1 bits (79), Expect = 0.23
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
++++ + G ++ IVG G+GK++L++AL + +G V
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 34.1 bits (79), Expect = 0.23
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+NI++ + G L + G G+GKSSL+
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLI 38
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 34.2 bits (78), Expect = 0.24
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQN- 747
L NIN+++ + ++ A++G G GKS+ + L D + G + +G++ + + + N
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81
Query: 748 --------------------ATLRDNIVFG-KTHVPRRYNKVIDACALTPDFEMLPAGDS 786
++ DNI +G K H + K+ + + L
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK 141
Query: 787 TEIGEKGINLSGGQKQRV 804
++ ++LSGGQ+QR+
Sbjct: 142 DKLNTNALSLSGGQQQRL 159
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 34.8 bits (80), Expect = 0.25
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
IN+ ++ G LV ++G G+GKS+L L G SG +
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 33.1 bits (76), Expect = 0.27
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 703 AIVGSVGAGKSSLVSALCG 721
++G GAGKSSL +AL G
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.9 bits (78), Expect = 0.27
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
L+ IN+ + E + A++G G GKS+ + L D I V +G +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS-VKIEGEVLL 67
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 34.0 bits (78), Expect = 0.27
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 45/155 (29%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
L+ ++M + E ++ A++G G GKS+ + L D+I GS+ Q +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKA-ARIDGSVELDGQDIYQDGV 119
Query: 749 TL---------------------RDNIVFGKTHVPRRY---NKVIDACALTPDFEMLPAG 784
L R+NI +G PR++ N + A L D +
Sbjct: 120 NLVELRKRVGMVFQSPNPFPKSIRENISYG----PRKHGDINTGLLARLLGRD-DKDAED 174
Query: 785 DSTE---------------IGEKGINLSGGQKQRV 804
+ E + + + LSGGQ+QR+
Sbjct: 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRL 209
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 34.7 bits (81), Expect = 0.28
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+N+++ + G + G G+GKS+L+
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLI 652
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 34.6 bits (80), Expect = 0.28
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ 741
I++ +R G + +VG G+GKS+L AL + ++G I F Q
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLAL-------LRLIPSQGEIRFDGQ 348
Score = 31.1 bits (71), Expect = 3.3
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
++ I+ + G +A+VG G+GKS V+AL
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKS--VTAL 54
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 34.1 bits (78), Expect = 0.29
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--------------NTKG 734
++++++ V G +V ++G GAGK++ + G + + +G + +
Sbjct: 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78
Query: 735 SIAFVPQQAWI-QNATLRDNI--VFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGE 791
I ++PQ+A I + ++ DN+ V + A L +F + DS
Sbjct: 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 792 KGINLSGGQKQRVK 805
G +LSGG+++RV+
Sbjct: 135 -GQSLSGGERRRVE 147
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 34.0 bits (78), Expect = 0.30
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731
+ ++N +G AIVG G+GKS+L+ + + +G V
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 33.6 bits (78), Expect = 0.34
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 695 RVREGT-LVAIVGSVGAGKSSLVSALCGE 722
R R G VA+VG AGKS+L +AL G
Sbjct: 36 RKRSGVPTVALVGYTNAGKSTLFNALTGA 64
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 33.3 bits (77), Expect = 0.38
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
+ + R + + G G+GK++L+ +
Sbjct: 4 DRLAEKNRPMLRIGVGGPPGSGKTALIEKTLRAL 37
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 33.6 bits (77), Expect = 0.42
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-------------IAFVPQQAWI 745
G+L ++G G+GKS+L+ L G + +G V+ G +A V Q +
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT 86
Query: 746 Q-NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN-LSGGQKQR 803
T+RD + G+ + A D L + + + ++ ++ LSGG++QR
Sbjct: 87 AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVD-RALARTELSHLADRDMSTLSGGERQR 145
Query: 804 V 804
V
Sbjct: 146 V 146
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 33.9 bits (78), Expect = 0.45
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 48/174 (27%)
Query: 663 DPLVIENGTFTWERN---TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
F W RN E L N++ V+ GTL A++G+ GAGK++L
Sbjct: 751 MEKESGEDIFHW-RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTL---- 805
Query: 720 CGEMDKISGRVNT-------------------KGSIAFVPQQ-AWIQNATLRDNIVFGK- 758
++ ++ RV T + SI +V QQ + +T+R+++ F
Sbjct: 806 ---LNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAY 862
Query: 759 ----THVPR----RY-NKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803
V + Y +VI EM D+ +G G L+ Q++R
Sbjct: 863 LRQPKSVSKSEKMEYVEEVIKL------LEMESYADAV-VGVPGEGLNVEQRKR 909
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 33.5 bits (77), Expect = 0.46
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
L+ +N+ + +G + AI+G G+GKS+L + G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 33.3 bits (76), Expect = 0.52
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGS-------- 735
L++IN+ + + A++G G GKS+L+ L D KI+G++ G
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 736 ------IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
+ V Q+ ++ +N+ +G + KV+D + + A E+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVV---ERSLRGAALWDEV 135
Query: 790 GEK----GINLSGGQKQRV 804
++ LSGGQ+QR+
Sbjct: 136 KDRLKSHAFGLSGGQQQRL 154
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 33.7 bits (77), Expect = 0.53
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
P +N+N + + +A+VG G GKS+++ + GE+ SG V
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 33.2 bits (76), Expect = 0.53
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 690 QNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
++++ + G ++ IVG G+GK++L+ + G + +G V
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 32.7 bits (75), Expect = 0.54
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 25/133 (18%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
+ ++ + G + + G G GK++L+ L G + SG V G
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 735 SIAFVPQQAWIQNA-TLRDNIVFGKTHVPRRYNKVIDACALT--PDFEMLPAGDSTEIGE 791
+I ++ ++ + +N+ F + DA A FE LPA
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA------- 126
Query: 792 KGINLSGGQKQRV 804
LS GQ++R+
Sbjct: 127 ---QLSAGQQRRL 136
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 33.1 bits (75), Expect = 0.55
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGSIAFVP 740
++N+N+ V+ GT+ A++G G GK++ + A+ D +++GR+ G + P
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 33.1 bits (77), Expect = 0.57
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
VAIVG GKS+L++AL G+ KIS
Sbjct: 8 VAIVGRPNVGKSTLLNALVGQ--KIS 31
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 33.0 bits (75), Expect = 0.65
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 35/144 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKG--------- 734
L +IN+ + E + A++G G GKS+ + L D KI G V G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFG--------KTHVPRRYNKVIDACALTPDFEM 780
+ V Q+ ++ DN+ +G K + + + AL + +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK- 138
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
++ + + LSGGQ+QR+
Sbjct: 139 ------DDLKKSALKLSGGQQQRL 156
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 32.6 bits (75), Expect = 0.65
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 700 TLVAIVGSVGAGKSSLVSALC 720
T+V I G GAGKS+L L
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLE 54
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 32.2 bits (74), Expect = 0.66
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+A+VG AGKSS+++AL G
Sbjct: 1 IAVVGDQSAGKSSVLNALLGR 21
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 32.8 bits (75), Expect = 0.72
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQAWI-QNATLRD- 752
+ E ++ I+G G GK++ + L G + G + + ++++ PQ T+RD
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDL 81
Query: 753 --NIVFGKTHVPRRYNKVIDACALTPDFE-MLPAGDSTEIGEKGINLSGGQKQRV 804
+I P ++ + + +P LSGG+ QRV
Sbjct: 82 LSSITKDFYTHPYFKTEIAKPLQIEQILDREVP------------ELSGGELQRV 124
>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins,
mitofusins, and guanylate-binding proteins. The dynamin
family of large mechanochemical GTPases includes the
classical dynamins and dynamin-like proteins (DLPs) that
are found throughout the Eukarya. This family also
includes bacterial DLPs. These proteins catalyze
membrane fission during clathrin-mediated endocytosis.
Dynamin consists of five domains; an N-terminal G domain
that binds and hydrolyzes GTP, a middle domain (MD)
involved in self-assembly and oligomerization, a
pleckstrin homology (PH) domain responsible for
interactions with the plasma membrane, GED, which is
also involved in self-assembly, and a proline arginine
rich domain (PRD) that interacts with SH3 domains on
accessory proteins. To date, three vertebrate dynamin
genes have been identified; dynamin 1, which is brain
specific, mediates uptake of synaptic vesicles in
presynaptic terminals; dynamin-2 is expressed
ubiquitously and similarly participates in membrane
fission; mutations in the MD, PH and GED domains of
dynamin 2 have been linked to human diseases such as
Charcot-Marie-Tooth peripheral neuropathy and rare forms
of centronuclear myopathy. Dynamin 3 participates in
megakaryocyte progenitor amplification, and is also
involved in cytoplasmic enlargement and the formation of
the demarcation membrane system. This family also
includes mitofusins (MFN1 and MFN2 in mammals) that are
involved in mitochondrial fusion. Dynamin oligomerizes
into helical structures around the neck of budding
vesicles in a GTP hydrolysis-dependent manner.
Length = 180
Score = 32.1 bits (74), Expect = 0.76
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 701 LVAIVGSVGAGKSSLVSALCGE 722
L+A+VG AGKS+L++AL GE
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGE 23
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 32.3 bits (74), Expect = 0.78
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
++ V G +VAI+G GAGKS+L++ + G SG +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 32.3 bits (74), Expect = 0.86
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735
L +I+ V +G + ++G GAGK++ + + G + SG V G
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 32.3 bits (73), Expect = 0.91
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGS-------- 735
+++ ++ +R+ + +G G GKS+++ +L D + G V+ G
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 736 -------IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
I V QQ + ++ DN+ FG R N+ + A E
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFG-----LRLNRYKGDLGDRVKHALQGAALWDE 138
Query: 789 IGEK----GINLSGGQKQRV 804
+ +K G++LSGGQ+QR+
Sbjct: 139 VKDKLKVSGLSLSGGQQQRL 158
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 32.3 bits (74), Expect = 0.98
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQ 742
N+N+ VRE +V+++G GAGK+++ + L G G + +G I +P
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 32.5 bits (75), Expect = 1.0
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
VAI+G GKS+L++AL G+ KIS
Sbjct: 9 VAIIGRPNVGKSTLLNALVGQ--KIS 32
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 33.0 bits (75), Expect = 1.1
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 688 TLQNINM--------RVREGTLVAIVGSVGAGKSSLVSALC 720
TL+N G + I G GAGK++L+ A+
Sbjct: 7 TLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAIT 47
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 32.3 bits (74), Expect = 1.1
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVS------ALCGEMDKISGRVNTKGS------- 735
L+NIN+ + + + A +G G GKS+L+ L E + G + G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ-RAEGEILLDGENILTPKQ 87
Query: 736 --------IAFVPQQAWIQNATLRDNIVFG--------KTHVPRRYNKVIDACALTPDFE 779
+ V Q+ ++ DNI FG + + R + AL + +
Sbjct: 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK 147
Query: 780 MLPAGDSTEIGEKGINLSGGQKQR 803
++ + G +LSGGQ+QR
Sbjct: 148 -------DKLHQSGYSLSGGQQQR 164
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 32.7 bits (75), Expect = 1.1
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
S P + +++ +R+G ++ + G +GAG++ L+ L G + + SG V G
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313
Score = 32.3 bits (74), Expect = 1.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
L + V G ++A+VG GAGKS+++ L G + +G + G
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG 65
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 32.3 bits (74), Expect = 1.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGEMD 724
G + ++G G GKS+L++AL E++
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELN 189
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 32.1 bits (73), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
+++ + G ++ IVG G+GKS+L+ L G + G
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.1 bits (73), Expect = 1.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
++M + EG + +VG G+GKS + A+CG
Sbjct: 25 RVSMTLNEGEIRGLVGESGSGKSLIAKAICG 55
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 31.9 bits (72), Expect = 1.2
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM--DKISG 728
L +++ + G +VA++G G+GKS+L+ L G + DK +G
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 31.3 bits (72), Expect = 1.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
VAI+G GKS+L++AL G+ KIS
Sbjct: 6 VAIIGRPNVGKSTLLNALVGQ--KIS 29
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 31.6 bits (72), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSAL 719
R G L+A+VG GAGK +L+ A
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTLLDAA 25
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 32.6 bits (75), Expect = 1.3
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 48/157 (30%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISG--RVNTKGSIAFVPQQAWI 745
L++I++ G + ++G GAGKS+L+ + G +DK +G R + ++PQ+ +
Sbjct: 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKEFNGEARPAPGIKVGYLPQEPQL 79
Query: 746 -QNATLRDNIVFGKTHVPR---RYNKVIDACALTPDFEM--------------------- 780
T+R+N+ G + R+N++ A PD +M
Sbjct: 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWD 138
Query: 781 -------------LPAGDSTEIGEKGINLSGGQKQRV 804
P D+ LSGG+++RV
Sbjct: 139 LDRKLEIAMDALRCPPWDA-----DVTKLSGGERRRV 170
Score = 31.4 bits (72), Expect = 2.8
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--IAFVPQQ---- 742
+ +++ ++ G +V ++G GAGKS+L + G+ SG + + +A+V Q
Sbjct: 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397
Query: 743 -----AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLS 797
W + + D I GK VP R A F + ++G+ LS
Sbjct: 398 DPNKTVWEEISGGLDIIQLGKREVPSR--------AYVGRFNFKGSDQQKKVGQ----LS 445
Query: 798 GGQKQRV 804
GG++ RV
Sbjct: 446 GGERNRV 452
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.7 bits (74), Expect = 1.3
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 684 ESPPTLQNIN-----MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN 731
ESP T N+ M+V + L+ GS G GK+SL++AL + K R+N
Sbjct: 1525 ESPTTTVNLRRVLRAMQVGKPILLE--GSPGVGKTSLITALARKTGKKLIRIN 1575
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 31.1 bits (71), Expect = 1.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGEM 723
G L + G+ G GKS+L L +
Sbjct: 32 RGGLTLLAGAPGTGKSTLALDLAAAV 57
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 32.0 bits (73), Expect = 1.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 686 PPTLQ---NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
P TL+ + +R+ EG + +VG G GKS+ A+ G + G V
Sbjct: 31 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV 78
>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed.
Length = 500
Score = 32.1 bits (74), Expect = 1.5
Identities = 15/21 (71%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
Query: 702 VAIVGSVG---AGKSSLVSAL 719
VA VG VG AGKSSL+SAL
Sbjct: 159 VADVGLVGFPSAGKSSLISAL 179
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 31.9 bits (72), Expect = 1.5
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 30/138 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
+++ ++ + EG + I+G G+GKS++V L ++ G+V G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 735 ---SIAFVPQQ-AWIQNATLRDNIVFGK--THVP--RRYNKVIDACALTPDFEMLPAGDS 786
IA V Q A + + T+ DN FG + R K +DA E
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-GLENYAHSYP 162
Query: 787 TEIGEKGINLSGGQKQRV 804
E LSGG +QRV
Sbjct: 163 DE-------LSGGMRQRV 173
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 31.9 bits (72), Expect = 1.6
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 31/141 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGSIAFVPQQA 743
L ++++++ ++A +G G GKS+L+ D K+ GR+ + + Q
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ-- 93
Query: 744 WIQNATLRDNI--VFGKTHVPRRYNKVI-DACALTP-------------DFEMLPAGDST 787
I + LR + VF + P + K I + A P + + A
Sbjct: 94 -INSVKLRRQVGMVFQR---PNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE 149
Query: 788 EI----GEKGINLSGGQKQRV 804
E+ EKG LSGGQ+QR+
Sbjct: 150 EVKDKLKEKGTALSGGQQQRL 170
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and
Mx proteins. The dynamin family of large
mechanochemical GTPases includes the classical dynamins
and dynamin-like proteins (DLPs) that are found
throughout the Eukarya. These proteins catalyze membrane
fission during clathrin-mediated endocytosis. Dynamin
consists of five domains; an N-terminal G domain that
binds and hydrolyzes GTP, a middle domain (MD) involved
in self-assembly and oligomerization, a pleckstrin
homology (PH) domain responsible for interactions with
the plasma membrane, GED, which is also involved in
self-assembly, and a proline arginine rich domain (PRD)
that interacts with SH3 domains on accessory proteins.
To date, three vertebrate dynamin genes have been
identified; dynamin 1, which is brain specific, mediates
uptake of synaptic vesicles in presynaptic terminals;
dynamin-2 is expressed ubiquitously and similarly
participates in membrane fission; mutations in the MD,
PH and GED domains of dynamin 2 have been linked to
human diseases such as Charcot-Marie-Tooth peripheral
neuropathy and rare forms of centronuclear myopathy.
Dynamin 3 participates in megakaryocyte progenitor
amplification, and is also involved in cytoplasmic
enlargement and the formation of the demarcation
membrane system. This family also includes
interferon-induced Mx proteins that inhibit a wide range
of viruses by blocking an early stage of the replication
cycle. Dynamin oligomerizes into helical structures
around the neck of budding vesicles in a GTP
hydrolysis-dependent manner.
Length = 278
Score = 31.8 bits (73), Expect = 1.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ +VG +GKSS++ AL G
Sbjct: 6 IVVVGDQSSGKSSVLEALVG 25
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 31.6 bits (72), Expect = 1.7
Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV-----NTKGSIAFVPQQA 743
+++++ EG + ++G GAGK++L+ + + SG+V +T +FV ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 744 WIQNA--------TLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+ T R+N+ + + + R ++ ++L D
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR------LQLLEYLD-RR 130
Query: 789 IGEKGINLSGGQKQRV 804
+GE S G KQ+V
Sbjct: 131 VGE----FSTGMKQKV 142
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 31.6 bits (72), Expect = 1.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
P L+N+++ V G V + G G+GKS+L+ +L G++
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI 68
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 31.6 bits (72), Expect = 1.7
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSL 715
L+ ++++ G +++I+GS G+GKS+
Sbjct: 22 LKGVSLQANAGDVISIIGSSGSGKSTF 48
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 31.9 bits (73), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 182 NESLRKAARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQD 222
++L + AR + +PG Y + S I I +G+ PP D
Sbjct: 399 GDALSEHARQEFNSPGITLGYRYDGSPI-IVPDGTPPPPDD 438
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 31.1 bits (71), Expect = 1.9
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 702 VAIVGSVGAGKSSLVSAL-CGEMD 724
VA+VG+V AGKS+L+ L GE+D
Sbjct: 2 VAVVGNVDAGKSTLLGVLTQGELD 25
>gnl|CDD|237730 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 31.5 bits (72), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732
++IVG GK++LV L + GRV T
Sbjct: 4 LSIVGYKATGKTTLVERLVDRLSG-RGRVGT 33
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 31.6 bits (72), Expect = 1.9
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 682 GAESPP--TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
G ES P + I+ V++G +V IVG G+GKS A+ G +D GRV
Sbjct: 14 GDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID-YPGRV 63
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 31.1 bits (70), Expect = 1.9
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 702 VAIVGSVGAGKSSLVSALCGEM 723
+ ++G G GK++L++ L G+
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDE 29
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 30.7 bits (69), Expect = 1.9
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+A VG+VGAGK++L +AL G
Sbjct: 4 IAFVGAVGAGKTTLFNALQG 23
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 31.7 bits (72), Expect = 2.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
++N++ ++ G +AIVG G+GKS AL +++ G V
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer [Protein synthesis, tRNA and
rRNA base modification].
Length = 442
Score = 31.7 bits (72), Expect = 2.1
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSAL 719
++ +G +AIVGS GKSSL++AL
Sbjct: 199 KLDDGFKLAIVGSPNVGKSSLLNAL 223
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 31.3 bits (71), Expect = 2.1
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
++ ++ +REG +AI+G G+GKS+L L G ++ SG +
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL 70
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 31.3 bits (71), Expect = 2.4
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 704 IVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQ-----------AWIQNATLR 751
++G G GK++L+ L G SG + G + VP A + T+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 752 DNIVFGKTHVPRRYNKVIDACALTPDF-EMLPAGDSTEIGE-KGINLSGGQKQRV 804
+N+ F + KV + P E L E + K LSGGQ+QRV
Sbjct: 61 ENVAF-----GLKMRKV-PRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 31.3 bits (71), Expect = 2.4
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 686 PPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727
P L+++ + R LV IVG+ G+GKS+ ++A+ G +K S
Sbjct: 116 PEVLKDLALAKR--GLVIIVGATGSGKSTTMAAMIGYRNKNS 155
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.8 bits (71), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
R G L+ + G GAGKS+LV AL +
Sbjct: 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNL 32
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 31.1 bits (71), Expect = 2.4
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD------KISGRVNTKGSIAFVPQQ 742
L +I+MR+ + + A +G G GKS+L+ M+ +I G + G + +
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCF-NRMNDLVDNCRIEGEIRLDGQNIYDKK- 98
Query: 743 AWIQNATLRDNI--VFGK 758
+ A LR + VF +
Sbjct: 99 --VDVAELRRRVGMVFQR 114
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 30.2 bits (68), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 695 RVREGT--LVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
R R G V + G G GK+SL+ L + +G+
Sbjct: 18 RARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKC 55
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 31.5 bits (72), Expect = 2.6
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQ-AWIQNATLRDNI 754
+ +G ++ I+G G GK++ V L G + G +++ PQ + + T+ D +
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYDGTVEDLL 422
Query: 755 VFGKTHVPRRYNKVIDACALTPDF--EMLPAGDSTEIGEKGI-NLSGGQKQRV 804
I + + F E++ + ++ E+ + LSGG+ QRV
Sbjct: 423 -----------RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRV 464
Score = 30.3 bits (69), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723
R G +V I+G G GKS+ + L GE+
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGEL 124
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 31.3 bits (71), Expect = 2.6
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 46/146 (31%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS--------------- 735
N ++ + EG + ++G G+GKS+L+ A+ G G V K
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 736 ------IAFVPQQ----AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDF 778
++ V QQ W T+ +N+ FG K +R ++ ++ L
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLA--- 155
Query: 779 EMLPAGDSTEIGEKGINLSGGQKQRV 804
+ GE LSGG +QRV
Sbjct: 156 ----QWADRKPGE----LSGGMQQRV 173
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an ATPase
enzyme and as a kinase, and phosphorylates periplasmic
binding proteins involved in the LAO (lysine, arginine,
ornithine)/AO transport systems.
Length = 267
Score = 30.8 bits (70), Expect = 2.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 679 EGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
E E+ L+ + V I G GAGKS+L+ AL
Sbjct: 9 ESRRPEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEAL 49
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 30.8 bits (70), Expect = 3.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
L N+++ + +G +AI+G G+GK++ + L
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHL 53
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.3 bits (71), Expect = 3.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 701 LVAIVGSVGAGKSSLVSALC--------GEMDKISGRVNTKGS 735
+ IVG GAGKSS++ A+ + G
Sbjct: 27 IFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGE 69
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 31.1 bits (71), Expect = 3.1
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 695 RVREGT-LVAIVGSVGAGKSSLVSALCGE 722
R R G LVA+VG AGKS+L +AL G
Sbjct: 187 RSRSGIPLVALVGYTNAGKSTLFNALTGA 215
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 30.6 bits (69), Expect = 3.1
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF--VPQQAW 744
L ++ VR G ++ +VG GAGKS+L++ + +G + GSI F P +AW
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARM-------AGMTSGSGSIQFAGQPLEAW 65
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 30.8 bits (69), Expect = 3.2
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744
++ I+M + + AI+G G GKS+ + L + ++ G V +G + F Q +
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISELEGPVKVEGVVDFFGQNIY 77
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 31.3 bits (71), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
N VR+ I+G GAGK+ L++ LC + K S R+
Sbjct: 440 NFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRM 477
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 30.8 bits (70), Expect = 3.3
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL-CGEMDKISGRVNTKGS-IAFVPQQAWIQ 746
L +I + +G + ++G GAGKSSL+ L EM + SG +N G+ F +
Sbjct: 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKA 76
Query: 747 NATLRDNI--VFGKTHV-------------PRRYNKVIDACALTPDFEMLPAGDSTEIGE 791
LR N+ VF + ++ P R + AL ++L +
Sbjct: 77 IRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 792 K-GINLSGGQKQRV 804
+ ++LSGGQ+QRV
Sbjct: 137 RFPLHLSGGQQQRV 150
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 30.2 bits (69), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSAL 719
+ +G L+ + G G GKS+LV AL
Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 30.5 bits (69), Expect = 3.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
NI++ V G + AI+G G GK++L+ + G++ G +
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 30.0 bits (68), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
V ++G V GK++L +L + I R K
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRK 33
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 30.2 bits (68), Expect = 4.4
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
L +I + + + + A++G G GKS+L+ D I G G I +
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG-CRITGDILY 70
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 29.7 bits (67), Expect = 4.5
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 380 ILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAW 439
I +A LA+ ++L+ + +Q + + + L E+ + L
Sbjct: 37 ISTLLGIALLALGLVLLALGLLCLLLKAPVQSVRPQKLEE---LQGELSELKQQLSELQE 93
Query: 440 ELSFQEQILKIRSKEIKVLKEAAYLN 465
EL E+ + E++ LKE L
Sbjct: 94 ELEDLEERIAELESELEDLKEDLQLL 119
>gnl|CDD|225327 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 287
Score = 30.4 bits (69), Expect = 4.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
V + G+ G GKSSLV AL E R
Sbjct: 88 VLLWGARGTGKSSLVKALLNEYADEGLR 115
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel [Central intermediary metabolism, Nitrogen
metabolism].
Length = 199
Score = 29.8 bits (67), Expect = 4.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDK 725
+ + G VG+GK++L+ AL + +
Sbjct: 4 IGVAGPVGSGKTALIEALTRALRQ 27
>gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional.
Length = 602
Score = 30.6 bits (70), Expect = 4.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALC---GEMDKI 726
EG L+A G+ GAGKS+ AL +M KI
Sbjct: 257 AEGILIA--GAPGAGKSTFAQALAEFYADMGKI 287
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 30.3 bits (69), Expect = 4.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCG 721
VR G ++ +VG GAGKS+L++ + G
Sbjct: 19 VRAGEILHLVGPNGAGKSTLLARMAG 44
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.2 bits (68), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 692 INMRVREGTLVAIVGSVGAGKSSLVSALCG 721
++M + EG + +VG G+GKS + A+CG
Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICG 55
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 30.3 bits (69), Expect = 5.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALC 720
L N + ++ I GSV GKS+ L
Sbjct: 74 LGTNNQQRP--FIIGIAGSVAVGKSTTARILQ 103
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 29.5 bits (66), Expect = 5.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQ 741
V+EG ++ IVG G GK++ V L G++ G + + PQ
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ 68
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 28.8 bits (64), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 701 LVAIVGSVGAGKSSLVSALC 720
++ I G G+GKS+L L
Sbjct: 1 IILITGPPGSGKSTLAKKLA 20
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 30.1 bits (68), Expect = 5.2
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 702 VAIVGSVGAGKSSLVSAL 719
V ++G+ GAGKSSL++AL
Sbjct: 42 VLLMGATGAGKSSLINAL 59
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 30.4 bits (69), Expect = 5.3
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 370 IGLALYFLWGI--LGPSVLAGLAVMVILIPVNGYVATRI-RNLQIKQMKSKDARVKLMN- 425
W + ++L L V+VI++P A + + ++ K V+ +N
Sbjct: 174 FLYLFIRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNA 233
Query: 426 -EVLSGIKVL 434
E L + L
Sbjct: 234 LEELGKVDYL 243
>gnl|CDD|216019 pfam00609, DAGK_acc, Diacylglycerol kinase accessory domain.
Diacylglycerol (DAG) is a second messenger that acts as
a protein kinase C activator. This domain is assumed to
be an accessory domain: its function is unknown.
Length = 157
Score = 29.5 bits (67), Expect = 5.5
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 814 KSIGLPLSMAAIL-LNIAFQGFAIGSNIWLSVWSED---KSTIVNGTQDVGKRDLYLGVY 869
K + LP S+ I+ LNI +A G+++W + + ++ +G +V +G+
Sbjct: 66 KDVPLPSSLEGIVVLNI--PSYAGGTDLWGNSKEDGLFEPQSVDDGLLEV------VGLT 117
Query: 870 GALGLGQVLSVLTSSICVAEGS 891
GAL LGQV L S+ +A+G
Sbjct: 118 GALHLGQVQVGLGSAKRIAQGG 139
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.8 bits (67), Expect = 5.6
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 701 LVAIVGSVGAGKSSLVSALC-------GEMDKISGRVNTKGSIAF 738
L I G G+GK++++ A+ + K GR KG I
Sbjct: 21 LTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEI 65
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 30.2 bits (69), Expect = 5.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+AI+G GKSSL++A+ GE
Sbjct: 181 IAIIGRPNVGKSSLINAILGE 201
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 30.5 bits (69), Expect = 5.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 701 LVAIVGSVGAGKSSLVSALC 720
L AI G GAGK++L+ A+C
Sbjct: 32 LFAITGPTGAGKTTLLDAIC 51
>gnl|CDD|233579 TIGR01798, cit_synth_I, citrate synthase I (hexameric type). This
model describes one of several distinct but closely
homologous classes of citrate synthase, the protein that
brings carbon (from acetyl-CoA) into the TCA cycle. This
form, class I, is known to be hexameric and
allosterically inhibited by NADH in Escherichia coli,
Acinetobacter anitratum, Azotobacter vinelandii,
Pseudomonas aeruginosa, etc. In most species with a
class I citrate synthase, a dimeric class II isozyme is
found. The class II enzyme may act primarily on
propionyl-CoA to make 2-methylcitrate or be
bifunctional, may be found among propionate utilization
enzymes, and may be constitutive or induced by
propionate. Some members of this model group as class I
enzymes, and may be hexameric, but have shown regulatory
properties more like class II enzymes [Energy
metabolism, TCA cycle].
Length = 412
Score = 30.1 bits (68), Expect = 5.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 813 LKSIGLPLSMAAILLNIAFQGFAIGSNI-WLSVWSEDKSTIVNGTQDVGK-RDLYLGV 868
LK++G+P SM ++ FA+ + W+S WSE I + Q +G+ R LY G
Sbjct: 360 LKAMGIPTSMFTVI-------FALARTVGWISHWSE---MISDPGQKIGRPRQLYTGE 407
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 30.2 bits (68), Expect = 6.4
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMDK--------ISGRVNTK---GSIAFVPQQAWI-Q 746
G ++A++G G+GKS+L++AL G + + R TK FV Q +
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 747 NATLRDNIVF-GKTHVPR---RYNKVIDACALTPDFEMLPAGDSTEIGEKGI-NLSGGQK 801
+ T+R+ +VF +P+ + K++ A ++ + + + T IG I +SGG++
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TIIGNSFIRGISGGER 212
Query: 802 QRV 804
+RV
Sbjct: 213 KRV 215
>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli [Protein
synthesis, Other].
Length = 360
Score = 29.9 bits (68), Expect = 6.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
+ R V +VG GKSSL++ L + +
Sbjct: 150 KARNKKDVYVVGVTNVGKSSLINKLLKQNNGD 181
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 29.6 bits (67), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEM 723
REG ++ +VG G GKS+ + L G++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKL 50
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 29.8 bits (68), Expect = 6.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 705 VGSVGAGKSSLVSALCGEMDKISGRV 730
VG G GKSSL++AL E + + G V
Sbjct: 211 VGQSGVGKSSLINALLPEAEILVGDV 236
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 29.5 bits (67), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+N+++ + LV I G G+GKSSL
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLA 38
>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal.
Miro1 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the N-terminal
GTPase domain of Miro proteins. These atypical Rho
GTPases have roles in mitochondrial homeostasis and
apoptosis. Most Rho proteins contain a lipid
modification site at the C-terminus; however, Miro is
one of few Rho subfamilies that lack this feature.
Length = 168
Score = 28.8 bits (65), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ ++G G GKSSL+ +L E
Sbjct: 5 IVLIGDEGVGKSSLIMSLVSE 25
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 29.6 bits (66), Expect = 8.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-----KISGRVNTKGSIAFVPQQA 743
L I++ E L A++G G GKS+ + L D KI+G + +G + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 744 WIQNATLRDNI 754
++ LR +
Sbjct: 80 LVE---LRKEV 87
>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is unkown.
The protein sequences are similar to the ArgK protein in
E. coli. ArgK protein is a membrane ATPase which is
required for transporting arginine, ornithine and lysine
into the cells by the arginine and ornithine (AO system)
and lysine, arginine and ornithine (LAO) transport
systems.
Length = 148
Score = 28.8 bits (65), Expect = 8.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRV 730
+ I G GAGKS+L+ AL + RV
Sbjct: 2 IGITGVPGAGKSTLIDALITALRARGKRV 30
>gnl|CDD|213244 cd03277, ABC_SMC5_euk, ATP-binding cassette domain of eukaryotic
SMC5 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 213
Score = 29.1 bits (66), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 704 IVGSVGAGKSSLVSALC 720
I+G G+GKSS+V A+C
Sbjct: 28 IIGPNGSGKSSIVCAIC 44
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 29.3 bits (66), Expect = 8.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVN 731
VAI+G GKS+L++ L G+ I+
Sbjct: 3 VAILGRPNVGKSTLLNQLHGQKISITSPKA 32
>gnl|CDD|236133 PRK07933, PRK07933, thymidylate kinase; Validated.
Length = 213
Score = 29.2 bits (66), Expect = 8.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAF 738
L+AI G GAGK +L AL ++ R + ++AF
Sbjct: 2 LIAIEGVDGAGKRTLTEALRAALE---ARGRSVATLAF 36
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 29.1 bits (66), Expect = 9.0
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 33/116 (28%)
Query: 701 LVAIVGSVGAGKSSLVS----ALCGEM----------DKISGRVNTKGSIAFVPQQAWIQ 746
L IVG GAGK++++ AL GE+ K+ + +
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQV---------- 73
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI-NLSGGQK 801
L GK + R +++ G+S SGG+K
Sbjct: 74 --KLAFENANGKKYTITRSLAILENVI------FCHQGESNWPLLDMRGRCSGGEK 121
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 29.5 bits (67), Expect = 9.6
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 692 INMRVREGT--LVAIVGSVGAGKSSLVSALCGEMDKISG-RVNTKGSI 736
I + RE +VAI GS GKS+ V+ L GEM K +G +V G+I
Sbjct: 96 IELFCREAQAPIVAITGS--NGKST-VTTLVGEMAKAAGWKVGVGGNI 140
>gnl|CDD|214810 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 29.2 bits (66), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 705 VGSVGAGKSSLVSALCGEMDKISGR 729
+G VG GKSSLV L +++ S
Sbjct: 84 LGPVGGGKSSLVECLKRGLEEYSKT 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.411
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,565,953
Number of extensions: 4866952
Number of successful extensions: 7485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7279
Number of HSP's successfully gapped: 490
Length of query: 950
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 844
Effective length of database: 6,236,078
Effective search space: 5263249832
Effective search space used: 5263249832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (28.4 bits)