RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16196
(950 letters)
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 252 bits (647), Expect = 6e-78
Identities = 84/142 (59%), Positives = 99/142 (69%), Gaps = 7/142 (4%)
Query: 663 DPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722
+ + + N TFTW R PPTL I + EG LVA+VG VG GKSSL+SAL E
Sbjct: 2 NSITVRNATFTWAR-------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54
Query: 723 MDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLP 782
MDK+ G V KGS+A+VPQQAWIQN +LR+NI+FG Y VI ACAL PD E+LP
Sbjct: 55 MDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP 114
Query: 783 AGDSTEIGEKGINLSGGQKQRV 804
+GD TEIGEKG+NLSGGQKQRV
Sbjct: 115 SGDRTEIGEKGVNLSGGQKQRV 136
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 246 bits (630), Expect = 1e-75
Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 666 VIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725
V+EN T WE P L++IN ++ G L+A+ GS GAGK+SL+ + GE++
Sbjct: 8 VMENVTAFWEE-------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 726 ISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGD 785
G++ G I+F Q +WI T+++NI+FG ++ RY VI AC L D D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 786 STEIGEKGINLSGGQKQRV 804
+ +GE GI LSGGQ+ R+
Sbjct: 121 NIVLGEGGITLSGGQRARI 139
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 231 bits (590), Expect = 3e-69
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 659 SSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSA 718
++ + + ++ + P L++IN ++ G L+A+ GS GAGK+SL+
Sbjct: 28 NNNNRKTSNGDDSLSFSNFS----LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 83
Query: 719 LCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDF 778
+ GE++ G++ G I+F Q +WI T+++NI G ++ RY VI AC L D
Sbjct: 84 IMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDI 142
Query: 779 EMLPAGDSTEIGEKGINLSGGQKQRV 804
D+ +GE GI LSGGQ+ R+
Sbjct: 143 SKFAEKDNIVLGEGGITLSGGQRARI 168
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 100 bits (252), Expect = 7e-24
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 682 GAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------- 734
+SP L NIN+ +++G ++ IVG G+GKS+L + +G+V G
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 735 ------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDFEM-LPAGD 785
+ V Q + N ++ DNI + KVI A A DF L G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV--EKVIYAAKLAGAHDFISELREGY 135
Query: 786 STEIGEKGINLSGGQKQRV 804
+T +GE+G LSGGQ+QR+
Sbjct: 136 NTIVGEQGAGLSGGQRQRI 154
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 97.9 bits (245), Expect = 6e-23
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
+S L++I+ + +++A G G GKS++ S L +G + G
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDST 787
I FV Q + I T+R+N+ +G + A F E +P +T
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAFARSFVENMPDQLNT 131
Query: 788 EIGEKGINLSGGQKQRV 804
E+GE+G+ +SGGQ+QR+
Sbjct: 132 EVGERGVKISGGQRQRL 148
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 95.0 bits (237), Expect = 2e-21
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
TLQ+++ V G +A+VG GAGKS+++ L D SG + G
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
I VPQ + N T+ DNI +G+ ++V A A D P G T++G
Sbjct: 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAGN--DEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 791 EKGINLSGGQKQRV 804
E+G+ LSGG+KQRV
Sbjct: 186 ERGLKLSGGEKQRV 199
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 93.4 bits (233), Expect = 3e-21
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
TL++IN + GT A+VG G+GKS++ L D G + G
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIR 92
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
I VPQ + N T++ NI++GK +VI A A DF E LP T +G
Sbjct: 93 SIIGIVPQDTILFNETIKYNILYGKLDATD--EEVIKATKSAQLYDFIEALPKKWDTIVG 150
Query: 791 EKGINLSGGQKQRV 804
KG+ LSGG++QR+
Sbjct: 151 NKGMKLSGGERQRI 164
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 96.5 bits (241), Expect = 9e-21
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
P L+NIN+++ G VA+VG G+GKS++ S + D G + G
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 413
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDST 787
+A V Q + N T+ +NI + +T R ++ +A A DF + G T
Sbjct: 414 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDT 472
Query: 788 EIGEKGINLSGGQKQRV 804
IGE G+ LSGGQ+QR+
Sbjct: 473 IIGENGVLLSGGQRQRI 489
Score = 59.1 bits (144), Expect = 4e-09
Identities = 41/300 (13%), Positives = 117/300 (39%), Gaps = 25/300 (8%)
Query: 257 LLTFVSPQILSWLIE--FVNEPNAPLWKGYFYAILLLVTSVVQTLL--LSTYFDRMFRVG 312
+L L++ F + L + ++++ +++ + +S+Y + V
Sbjct: 39 ASDTFMLSLLKPLLDDGFGKTDRSVLL---WMPLVVIGLMILRGITSYISSYC--ISWVS 93
Query: 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMD--ITPYLNMLWSAPLQ- 369
++ + ++ + + + + G +++ ++ D++++ + L +
Sbjct: 94 GKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153
Query: 370 IGLALYFLW--GILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEV 427
IGL + + L ++ ++ I I V+ R R++ + ++
Sbjct: 154 IGLFIMMFYYSWQLSIILVVLAPIVSIAI---RVVSKRFRSISKNMQNTMGQVTTSAEQM 210
Query: 428 LSGIKVLKLYAWELS----FQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVS 483
L G K + ++ + F + K+R + +K++ ++ + I S A L ++
Sbjct: 211 LKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA--LAFVLY 268
Query: 484 FAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQED 543
A + DS S S+ ++R PL L + +Q + + + + + ++ E
Sbjct: 269 AASFPSVMDSLTAGTITVVFS-SMIALMR-PLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326
Score = 36.4 bits (85), Expect = 0.042
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 605 RAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFT 662
+ + + +++ ++FFD G +LSR D + V + L+T V +
Sbjct: 95 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152
Score = 33.3 bits (77), Expect = 0.44
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 911 IQFFDTTPQGRIISRFSKDVDILDNAI 937
+ FFD G ++SR + D + + ++
Sbjct: 113 VAFFDKQSTGTLLSRITYDSEQVASSS 139
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 90.7 bits (226), Expect = 4e-20
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------------ 734
LQ + + G + A+VG G+GKS++ + L G+V G
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 735 -SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDFEM-LPAGDSTEIG 790
+A V Q+ + + R+NI +G T P ++ + DF P G TE+G
Sbjct: 93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESGAHDFISGFPQGYDTEVG 151
Query: 791 EKGINLSGGQKQRV 804
E G LSGGQ+Q V
Sbjct: 152 ETGNQLSGGQRQAV 165
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 93.8 bits (234), Expect = 6e-20
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN---------TKG 734
+ P L +++ + +G VA+VG G+GKS++ + D SG +
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
Query: 735 S----IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDST 787
+ A V Q + N T+ +NI + R ++ A A +F E +P G T
Sbjct: 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDT 472
Query: 788 EIGEKGINLSGGQKQRV 804
IGE G +LSGGQ+QRV
Sbjct: 473 VIGENGTSLSGGQRQRV 489
Score = 62.2 bits (152), Expect = 5e-10
Identities = 45/299 (15%), Positives = 107/299 (35%), Gaps = 23/299 (7%)
Query: 257 LLTFVSPQILSWLIE--FVNEPNAPLWKGYFYAILLLVTSVVQTLL--LSTYFDRMFRVG 312
+L L++ F N + L ++L V+ L S+Y + V
Sbjct: 39 AADTYMISLLKPLLDEGFGNAESNFLR---ILPFMILGLMFVRGLSGFASSYC--LSWVS 93
Query: 313 MRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMD--ITPYLNMLWSAPLQ- 369
+ + ++ + + + + G +++ ++ D++++ + L +
Sbjct: 94 GNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASI 153
Query: 370 IGLALYFLWGILGPSV-LAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVL 428
IGL W + L + V ++ +V+ R R + + ++L
Sbjct: 154 IGLLTLMFW--NSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQML 211
Query: 429 SGIKVLKLYAWELS----FQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSF 484
G KV+ Y + F + +R + +K++ + + I S A L +++
Sbjct: 212 KGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA--LFAVLFL 269
Query: 485 AVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQED 543
A S ++F ++R PL L + S+ + + + + M+ E
Sbjct: 270 ASVDSIRAELTPGTFTVVFS-AMFGLMR-PLKALTSVTSEFQRGMAACQTLFGLMDLET 326
Score = 37.6 bits (88), Expect = 0.022
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 599 VAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVY 658
V+ + RR + + +H + FFD G +LSR D + V L++ V
Sbjct: 92 VSGNVVMQMRR---RLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVR 148
Query: 659 SSFT 662
+
Sbjct: 149 EGAS 152
Score = 33.3 bits (77), Expect = 0.43
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 911 IQFFDTTPQGRIISRFSKDVDILDNAI 937
++FFD G ++SR + D + + A
Sbjct: 113 VRFFDQESTGGLLSRITYDSEQVAGAT 139
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 93.4 bits (233), Expect = 9e-20
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVN---------TKGS-- 735
P L++IN+ + +G VA VG G GKS+L++ + D SG++ GS
Sbjct: 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 736 --IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
I V Q + + T+++NI+ G+ +V++A A DF LP G TE+G
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATD--EEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 791 EKGINLSGGQKQRV 804
E+G+ LSGGQKQR+
Sbjct: 473 ERGVKLSGGQKQRL 486
Score = 63.0 bits (154), Expect = 3e-10
Identities = 56/323 (17%), Positives = 120/323 (37%), Gaps = 42/323 (13%)
Query: 245 FLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKG------YFYAILLLVTSVVQT 298
+ +I+ + + P ++ + I+ V +A I L + +V+
Sbjct: 16 IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRP 75
Query: 299 LL--LSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMS-----VDA 351
+ + Y ++ + +Y +S VG+ ++S V+
Sbjct: 76 PIEFIRQYL--AQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ---VISRVINDVEQ 130
Query: 352 QRMDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQI 411
+ I L +W + I +AL ++ + V LA + I P
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFL---DVKLTLAALFIF-PFYILTVYVFF---- 182
Query: 412 KQMK--SKDARVKL------MNEVLSGIKVLKLYAWELS----FQEQILKIRSKEIKVLK 459
+++ +++ L ++E + GI V+K +A E + F ++ ++ +K +
Sbjct: 183 GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242
Query: 460 EAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLP 519
AY AA + + P +V + YL S + AFV +L PL L
Sbjct: 243 WNAYSFAAINTVTDIGPIIV--IGVGAYLAISGSITVGTLAAFVGYL--ELLFGPLRRLV 298
Query: 520 MLISQLVQASVSVKRINSFMNQE 542
+ L Q+ S+ R+ ++++
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDED 321
Score = 37.6 bits (88), Expect = 0.022
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFT 662
F+ +G+++SR DV+ + + L+ T
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT 148
Score = 33.3 bits (77), Expect = 0.45
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 911 IQFFDTTPQGRIISRFSKDVDILDNAIPFCI 941
+F+ G++ISR DV+ + I +
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGL 139
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 92.0 bits (229), Expect = 5e-19
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV----------NTK--- 733
L+ +N++V+ G VA+VG+ G GKS+ V + D + G V N +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 734 GSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
I V Q+ + T+ +NI +G+ V +++ A A DF LP T +G
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVTM--DEIEKAVKEANAYDFIMKLPHQFDTLVG 521
Query: 791 EKGINLSGGQKQRV 804
E+G LSGGQKQR+
Sbjct: 522 ERGAQLSGGQKQRI 535
Score = 89.7 bits (223), Expect = 3e-18
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS----------- 735
P LQ +++ V++G +A+VGS G GKS++V L D ++G V G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 736 --IAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAGDSTEIG 790
+ V Q+ + + ++ +NI +G Y +++ A A F + LP +T +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 791 EKGINLSGGQKQRV 804
+KG LSGGQKQR+
Sbjct: 1167 DKGTQLSGGQKQRI 1180
Score = 40.0 bits (94), Expect = 0.005
Identities = 46/333 (13%), Positives = 92/333 (27%), Gaps = 53/333 (15%)
Query: 244 TFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTLLLST 303
+FG + + + YA L+
Sbjct: 68 MLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGV--LIVA 125
Query: 304 YFDRMF------RVGMRMRSALISTIYRKALTISNNARK--ETTVGEIVNLMSVDAQRM- 354
Y F R ++R I + VGE+ ++ D ++
Sbjct: 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQ------EIGWFDVHDVGELNTRLTDDVSKIN 179
Query: 355 --------DITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRI 406
+ + + W + L LA+ +L G A +
Sbjct: 180 EGIGDKIGMFFQAMATFFGG---FIIGFTRGWKL----TLVILAISPVLGLSAGIWAKIL 232
Query: 407 RNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSF--QEQILKIRSKEIKVLKEAAYL 464
+ K++ + + EVL+ I+ + +F Q++ L+ + ++ K
Sbjct: 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVI------AFGGQKKELERYNNNLEEAKRLGIK 286
Query: 465 NAATSFIWSCAPFLVSLVSFAV------YLLSDDSHVLDAQIAFVSLSLFNILRFPLSML 518
A T+ I A FL+ S+A+ L+ I F +
Sbjct: 287 KAITANISMGAAFLLIYASYALAFWYGTSLVIS--KEYSIGQVLTVFFSVLIGAFSVGQA 344
Query: 519 PMLISQLVQASVSVKRINSFMNQEDLDRGFTID 551
I A + + + +D +ID
Sbjct: 345 SPNIEAFANARGAAYEV-----FKIIDNKPSID 372
Score = 31.2 bits (71), Expect = 2.4
Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 830 AFQGFAIGSNIWLSVWSEDKSTIVNG-TQDVGKRDLYLGVYGALGLGQVLSVLTSSICVA 888
+F S ++ DK + +++ Y +G G ++
Sbjct: 77 SFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYY-TG--IGAGVLIVAYIQVSFWC 133
Query: 889 EGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILDNAI 937
+ + + + + I +FD G + +R + DV ++ I
Sbjct: 134 LAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGI 182
Score = 29.6 bits (67), Expect = 6.0
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 18/133 (13%)
Query: 513 FPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYSFVSYMVYYPCVISLLILNF 572
PL ML + + + SV ++ + M Y +
Sbjct: 64 LPLMML--IFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY--AYYYTGI-G 118
Query: 573 FADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLMVLTNILHSCMSFFDTTPLG 632
+ I+ +A R ++ I++ + +FD +G
Sbjct: 119 AGVLIVAY-----------IQVSFWCLA--AGRQIHKIRQKFFHAIMNQEIGWFDVHDVG 165
Query: 633 RILSRCGKDVDTV 645
+ +R DV +
Sbjct: 166 ELNTRLTDDVSKI 178
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 91.1 bits (227), Expect = 5e-19
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG------ 734
P L +N V+ G+LVA++G G+GKS+L++ + +D GRV
Sbjct: 352 FENTDP-VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410
Query: 735 -------SIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC--ALTPDF-EMLPAG 784
I+ VPQ+ + + T+++N+ +G+ +++++A A DF LP G
Sbjct: 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISLPEG 468
Query: 785 DSTEIGEKGINLSGGQKQR 803
+ + G N SGGQKQR
Sbjct: 469 YDSRVERGGRNFSGGQKQR 487
Score = 54.5 bits (132), Expect = 1e-07
Identities = 49/314 (15%), Positives = 130/314 (41%), Gaps = 19/314 (6%)
Query: 239 KTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPN--APLWKGYFYAILLLVTSVV 296
K + + +++ + P +L+ +++ + + K IL+L+ +++
Sbjct: 19 KPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLK---TGILMLIVALI 75
Query: 297 QTL--LLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQ-- 352
+ + T F + L ++RK L+ S + ++ ++ D
Sbjct: 76 GAVGGIGCTVF--ASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQL 133
Query: 353 RMDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIK 412
+ + L ++ APL + I + ++ ++ + ++ + L K
Sbjct: 134 QNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRK 193
Query: 413 QMKSKDARVKLMNEVLSGIKVLKLYAWELS----FQEQILKIRSKEIKVLKEAAYLNAAT 468
+S D +++ E L G++V++ + E F++ +R I +
Sbjct: 194 IQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLF 253
Query: 469 SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQA 528
FI + +++++ F L+ ++ + + +A+ + L I+ F L M+ +++ +V+A
Sbjct: 254 IFIVNMG--MIAVLWFGGVLVRNNQMEIGSIMAYTNY-LMQIM-FSLMMIGNILNFIVRA 309
Query: 529 SVSVKRINSFMNQE 542
S S KR+ +N++
Sbjct: 310 SASAKRVLEVLNEK 323
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 88.4 bits (220), Expect = 3e-18
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV----------NTK--- 733
P Q+ ++ + G++ A+VG G+GKS+++S L D SG + N
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 734 GSIAFVPQQAWIQNATLRDNIVFGKTHVPR-RYNKVIDAC--ALTPDF-EMLPAGDSTEI 789
I V Q+ + + ++ +NI +G ++ A F P G +T +
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 790 GEKGINLSGGQKQRV 804
GEKG+ LSGGQKQR+
Sbjct: 478 GEKGVLLSGGQKQRI 492
Score = 39.5 bits (93), Expect = 0.005
Identities = 47/323 (14%), Positives = 121/323 (37%), Gaps = 28/323 (8%)
Query: 236 ALCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSV 295
L + +++ +P L +I+ + + + L +++V
Sbjct: 12 GLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAV 71
Query: 296 VQTLLLSTYFDRMF-------RVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMS 348
+ R++ R+ R+R++L S+I R+ + + +T GE++N +S
Sbjct: 72 FLCGAAANAI-RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD----KTRTGELINRLS 126
Query: 349 VDAQRMD--ITPYLNMLWSAPLQI--GLALYFLWGILGPSV-LAGLAVMVILIPVNGYVA 403
D + +T L+ A Q G+++ F + P++ L+V+ + +
Sbjct: 127 SDTALLGRSVTENLSDGLRAGAQASVGISMMF---FVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 404 TRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWEL----SFQEQILKIRSKEIKVLK 459
+R L S +L E + ++ ++ + E+ + ++ + K
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243
Query: 460 EAAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLP 519
A AT + ++S++ L+ + +F+ + + + + L
Sbjct: 244 ARAGFFGATGLSGNLI--VLSVLYKGGLLMGSAHMTVGELSSFLMYAFW--VGISIGGLS 299
Query: 520 MLISQLVQASVSVKRINSFMNQE 542
S+L++ + R+ + +E
Sbjct: 300 SFYSELMKGLGAGGRLWELLERE 322
Score = 34.1 bits (79), Expect = 0.23
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 904 TRVFSAV----IQFFDTTPQGRIISRFSKDVDILDNAI 937
T +FS++ + FFD T G +I+R S D +L ++
Sbjct: 99 TSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136
Score = 31.8 bits (73), Expect = 1.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 605 RAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNIL 649
R RL + ++IL ++FFD T G +++R D + +
Sbjct: 92 RIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 81.1 bits (201), Expect = 6e-16
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 22/134 (16%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALC-------GEMDKISGRVNTK------ 733
P L++I ++ G VA+VG G+GK+++V+ L G++ + G ++ +
Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDG-IDIRKIKRSS 426
Query: 734 --GSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTP--DF-EMLPAGDSTE 788
SI V Q + + T+++N+ +G ++ +A LT F + LP G T
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETV 484
Query: 789 IGEKGINLSGGQKQ 802
+ + G +LS GQ+Q
Sbjct: 485 LTDNGEDLSQGQRQ 498
Score = 37.9 bits (89), Expect = 0.017
Identities = 55/323 (17%), Positives = 113/323 (34%), Gaps = 35/323 (10%)
Query: 239 KTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVVQT 298
+ T + + +L +SP ++ I+ V P + +L+L T T
Sbjct: 33 RPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALT 90
Query: 299 LLLSTYFDR-MFRVGMR----MRSALISTIYRKALTIS---NNARKETTVGEIVNLMS-- 348
LL + M + +R L + R + + G+I++ +
Sbjct: 91 SLLFWLQGKIMLTLSQDVVFRLRKELFEKLQR--VPVGFFDRTPH-----GDIISRVIND 143
Query: 349 VDAQRMDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRN 408
VD + + +S + + A+ ++ + +V+ L + I +P+ + + +
Sbjct: 144 VDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV---NVILSLVTLSI-VPLTVLITQIVSS 199
Query: 409 LQIKQMKSKDARVKLMN----EVLSGIKVLKLYAWE----LSFQEQILKIRSKEIKVLKE 460
K + +N E +SG+ V+KL+ E F +R K
Sbjct: 200 QTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIF 259
Query: 461 AAYLNAATSFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPM 520
+ L + + + L+S L D V F+ S PL+ L
Sbjct: 260 SGVLPPLMNMVNNLGFALISGFG-GWLALKDIITVGTIA-TFIGYS--RQFTRPLNELSN 315
Query: 521 LISQLVQASVSVKRINSFMNQED 543
+ + A S +RI ++ E+
Sbjct: 316 QFNMIQMALASAERIFEILDLEE 338
Score = 37.5 bits (88), Expect = 0.018
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 623 MSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGVYSSFT 662
+ FFD TP G I+SR DVD ++N+L N ++ T
Sbjct: 125 VGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVT 164
Score = 37.2 bits (87), Expect = 0.030
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 911 IQFFDTTPQGRIISRFSKDVDILDNAI 937
+ FFD TP G IISR DVD ++N +
Sbjct: 125 VGFFDRTPHGDIISRVINDVDNINNVL 151
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 77.1 bits (190), Expect = 6e-15
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR-----VNT------ 732
L+NI+ + G V ++G G+GKS+L+SA + G V+
Sbjct: 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSITLE 90
Query: 733 --KGSIAFVPQQAWIQNATLRDNI-VFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
+ + +PQ+ +I + T R N+ H + KV D L E P +
Sbjct: 91 QWRKAFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149
Query: 790 GEKGINLSGGQKQRV 804
+ G LS G KQ +
Sbjct: 150 VDGGCVLSHGHKQLM 164
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 70.3 bits (173), Expect = 2e-13
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 662 TDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
L +EN F ++ Q +N + +G ++A++G G GKS+L+ L G
Sbjct: 2 NKALSVENLGFYYQAE--------NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53
Query: 722 EMDKISGRVNTKGSIAFVPQQ-AWIQNATLRDNIVFGKT-HVP--RRYNKVIDACALTPD 777
I G++ SI FVPQ + ++ D ++ G++ H+ + A+
Sbjct: 54 IHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM--- 110
Query: 778 FEMLPAGDSTEIGEKGIN-LSGGQKQRV 804
+ L + T + ++ LSGGQ+Q +
Sbjct: 111 -QALDYLNLTHLAKREFTSLSGGQRQLI 137
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 70.4 bits (173), Expect = 1e-12
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
L + ++ ++G G GK++L+ L G + G+ K +++ PQ+ +
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK 425
Query: 747 ----NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQ 802
L + G+ P+ V+ + + +LSGG+ Q
Sbjct: 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQ 474
Query: 803 RV 804
RV
Sbjct: 475 RV 476
Score = 43.1 bits (102), Expect = 4e-04
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 38/144 (26%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI-------------- 736
+ R G ++ +VG+ G GKS+ + L G+ GR +
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154
Query: 737 ------------AFVPQQAWIQNATLRDNIVFG----KTHVPRRYNKVIDACALTPDFEM 780
PQ ++ + K + + V + ++
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKI---LQL 211
Query: 781 LPAGDSTEIGEKGINLSGGQKQRV 804
+I + LSGG+ QR
Sbjct: 212 ENVLKR-DIEK----LSGGELQRF 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 4e-12
Identities = 122/747 (16%), Positives = 212/747 (28%), Gaps = 288/747 (38%)
Query: 44 LILLNRTRG-LRTSGCIFLFVSLLALCGAPQYRTELTASL---TRGFTIDYSFVSYMVYY 99
L L + G L L V + A Q + + L T GF D +
Sbjct: 9 LTL---SHGSLEHV----LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT----- 56
Query: 100 PCVISLL--ILNFFADAAPTFSEYPVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLE 157
L+ L + + V + ++ L F+ Y LE
Sbjct: 57 --PAELVGKFLGYVSS--------LVEPSKVGQFDQVL--NLCLTEFEN----CY---LE 97
Query: 158 NKDLWNLNHEDTSKEIVPLFDKHWNESLRKAARSQQTTPGTQA-------AYLKNSSNID 210
D+ H +L AA+ Q T Y+
Sbjct: 98 GNDI------------------H---AL--AAKLLQENDTTLVKTKELIKNYIT------ 128
Query: 211 IAANGSTRPPQDTSKKPPAQASIVGA--LCKTFGPTFLFGSSLKLIQDLLTFVSPQ--IL 266
A + RP S +A G L FG G Q
Sbjct: 129 -ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-----G---------------QGNTD 167
Query: 267 SWLIEFVNEPNAPLWKGYFYAILLLVTSVVQTL--LLST--YFDRMFRVGMRMRSALIST 322
+ E + L++ Y + L+ +TL L+ T +++F G+ + L
Sbjct: 168 DYFEELRD-----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL--- 219
Query: 323 IYRKALTISNNARKETTVGEIVNLMSVDAQRMDITPYLNMLWSAPLQIGL---ALYFLWG 379
+ + L+S+ P S PL IG+ A Y
Sbjct: 220 ------------ENPSNTPDKDYLLSI--------PI-----SCPL-IGVIQLAHY---- 249
Query: 380 ILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYA- 438
V ++ +++S +K G+ A
Sbjct: 250 ---------------------VVTAKLLGFTPGELRS---YLKGATGHSQGLVTAVAIAE 285
Query: 439 ---WELSFQEQILKI---------RSKE--------IKVLKEAAYLNAATSFIWSCAPFL 478
WE SF + K R E +L+++ N +P L
Sbjct: 286 TDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-----SPML 339
Query: 479 -VSLVSFAV---YLLSDDSHV-LDAQIAFVSLSLFNILR------FPLSMLPMLISQLVQ 527
+S ++ Y+ +SH+ Q+ +SL N + P S L L L +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQV---EISLVNGAKNLVVSGPPQS-LYGLNLTLRK 395
Query: 528 ASVSVKRINSFMNQ---EDLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEY- 583
A S ++Q +R F+ P ++ +P S
Sbjct: 396 AKAP-----SGLDQSRIPFSERKLKFSNRFL------P--VA----------SPFHSHLL 432
Query: 584 -PVTEDPLVIENVCVVVAKGTIR-AARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKD 641
P ++ L+ ++ + K + A+ + + V +DT G D
Sbjct: 433 VPASD--LINKD----LVKNNVSFNAKDIQIPV-----------YDT--------FDGSD 467
Query: 642 VDTVD-NILPNLLLTGVYSSFTDPLVIENGTFTWERNTE---------GEGAESPPTLQN 691
+ + +I + V P+ WE T+ G G S L
Sbjct: 468 LRVLSGSISERI----VDCIIRLPV-------KWETTTQFKATHILDFGPGGAS--GLGV 514
Query: 692 INMRVREGTLVAIV--GSVGAGKSSLV 716
+ R ++GT V ++ G++
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 57.0 bits (137), Expect = 3e-08
Identities = 88/468 (18%), Positives = 130/468 (27%), Gaps = 197/468 (42%)
Query: 43 ALILLNRTRGLRTSGCIFLF-------VSLLALCGAPQ-----YRTELTASLTRGFTIDY 90
A I+ R +++ LF L+A+ G Q Y EL L
Sbjct: 129 ARIMAKRPFDKKSNS--ALFRAVGEGNAQLVAIFGG-QGNTDDYFEEL-RDL-------- 176
Query: 91 SFVSYMVYYPCVISLL-----ILNFFA----DAAPTFS---------EYPVTENPSPEYR 132
Y Y+ V L+ L+ DA F+ E P P +Y
Sbjct: 177 ----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-PDKDYL 231
Query: 133 A----SFPSKLI----FAWFDRMAW-LGYRKPLENKDL--WNLNHEDTSKEIVP-LF--- 177
S P LI A + A LG+ P E + H S+ +V +
Sbjct: 232 LSIPISCP--LIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGH---SQGLVTAVAIAE 285
Query: 178 ---DKHWNESLRKA--------ARSQQTTPGTQA-------------------------- 200
+ + S+RKA R + P T
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 201 ------------AYLKNSSNIDIA-ANGSTR-----PPQD---------TSKKPPA--QA 231
++L ++I+ NG+ PPQ +K P Q+
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 232 SIVGALCK-TFGPTFL-----FGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYF 285
I + K F FL F S LL S I L++ N +
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSH------LLVPASDLINKDLVK-----NNVSFNAKD 454
Query: 286 YAILLLVTSVVQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVN 345
I V T FD G +R +++ E V I+
Sbjct: 455 IQI-----PVYDT------FD-----GSDLRV------LSGSIS-------ERIVDCIIR 485
Query: 346 LMSVDAQRMDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMV 393
+ V W Q A + L GP +GL V+
Sbjct: 486 -LPVK-------------WETTTQFK-ATHIL--DFGPGGASGLGVLT 516
Score = 47.7 bits (113), Expect = 2e-05
Identities = 104/596 (17%), Positives = 170/596 (28%), Gaps = 198/596 (33%)
Query: 394 ILIPVNGYV-ATRIRNLQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRS 452
+L+P + A++++ K + +E + +L L +
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT---PAELVGKFLGY--------- 67
Query: 453 KEIKVLKEAAYLNAATSFIWSCAPFLVSLVSF-AVYLLSDDSHVLDAQIAFVSLSLFNIL 511
+ L E + + + + L F YL +D H A + L
Sbjct: 68 --VSSLVEPSKVGQFDQVL------NLCLTEFENCYLEGNDIH------ALAA-KLLQEN 112
Query: 512 RFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDR----------------GFTIDYSF- 554
L LI + A + KR + L R G T DY F
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FE 171
Query: 555 ---VSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKG--------- 602
Y Y+ L+ + +A T SE + L E V +G
Sbjct: 172 ELRDLYQTYHV-----LVGDLIKFSAETLSE--LIRTTLDAEKVF---TQGLNILEWLEN 221
Query: 603 ---------TIRAARRLHLMVLTNILH---SCMSFFDTTPLGRILSR------CGKDV-- 642
+ L+ + + H + TP G + S + +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL-LGFTP-GELRSYLKGATGHSQGLVT 279
Query: 643 -------DTVDNILPN-------LLLTGVYSSFTDPLVIENGTFTWERNTEGEGAESP-- 686
D+ ++ + L GV P + + EG SP
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 687 -------PTLQNI----NMRVREGTLVAIVGSVGAGKSSLV-----SALCG--------- 721
+Q+ N + G V I S+ G +LV +L G
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 722 ---EMD--KI--SGRVNTKGSIAFVP----------QQA--WIQNATLRDNIVFGKT--H 760
+D +I S R K S F+P A I +++N+ F
Sbjct: 398 APSGLDQSRIPFSER-KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 761 VPRRYNKVIDACALTPDFEMLPAGD----STEIGEKGINLSGGQKQRVKWQV-----YLH 811
+P V D T D D S I E+ ++ + VKW+ H
Sbjct: 457 IP-----VYD----TFD-----GSDLRVLSGSISERIVDCI--IRLPVKWETTTQFKATH 500
Query: 812 YLKSIGLPLSMAAI--LLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLY 865
L G P + + L + G + IV GT D+ D Y
Sbjct: 501 IL-DFG-PGGASGLGVLTHRNKDGTGVR-------------VIVAGTLDINPDDDY 541
Score = 42.3 bits (99), Expect = 0.001
Identities = 42/282 (14%), Positives = 83/282 (29%), Gaps = 95/282 (33%)
Query: 723 MDKISGR--VNTKGSIAF---VPQQAWIQNATLRDNIVFGKTHVPRRYNK---------V 768
MD S R + GS+ VP ++ + L++ F K +P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ--FNKI-LPEPTEGFAADDEPTTP 57
Query: 769 IDACA-----LTPDFEMLPAGDSTEIGEKGIN------LSG----------------GQK 801
+ ++ E G ++ + L G
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 802 QRVKW-QVYLHYLKSIGLPLSMAA--ILLNIAFQG----FAI----GSNIWLSVWSEDKS 850
+ + + Y+ P + L +G AI G+ + E
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT--DDYFEE--- 172
Query: 851 TIVNGTQDVGKRDLYLGVYGALGLGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAV 910
RDLY Y L +G ++ ++ L+ +++ E + T+ + +
Sbjct: 173 ----------LRDLY-QTYHVL-VGDLIKFSAETLS----ELIRTTLDAEKVFTQGLN-I 215
Query: 911 IQFF---DTTPQGRIISRFSKDVDILDNAIPFCIKSW-LLCL 948
+++ TP D D L + P S L+ +
Sbjct: 216 LEWLENPSNTP----------DKDYLLSI-PI---SCPLIGV 243
Score = 38.5 bits (89), Expect = 0.012
Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 89/235 (37%)
Query: 429 SGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCAPFLVSLVSFAVYL 488
G ++ + Y+ + F E I+ + K K+ KE +TS+ +
Sbjct: 1680 KGKRIRENYS-AMIF-ETIVDGKLKTEKIFKEINE--HSTSYTFR--------------- 1720
Query: 489 LSDDSHVLD----AQIA-F-VSLSLFNILR----FPL-------SMLPML--ISQLV-QA 528
+ +L Q A + + F L+ P S L + L A
Sbjct: 1721 --SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----LGEYAALASLA 1774
Query: 529 SVSVKRINSFMNQEDL-----DRGFTI------------DYSFVSYMVYYPCVISLLILN 571
V M+ E L RG T+ +Y M+ + +
Sbjct: 1775 DV--------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYG----MI--AINPGRVAAS 1820
Query: 572 FFADAAPTFSEYPVTEDPLVIE----NVC---VVVAKGTIRAARRLHLMVLTNIL 619
F +A E ++E NV V A G +RA L +TN+L
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA-GDLRA-----LDTVTNVL 1869
Score = 30.0 bits (67), Expect = 4.7
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 28 YTSPAIKFVTFLLLGALILLNRTRGLRTSGCIF----L--FVSLLALCGAPQYRTELTAS 81
+T PA+ + L +++GL + F L + +L +L E
Sbjct: 1731 FTQPALTLMEKAAFEDL----KSKGLIPADATFAGHSLGEYAALASLADV--MSIESLVE 1784
Query: 82 LT--RGFTI 88
+ RG T+
Sbjct: 1785 VVFYRGMTM 1793
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 68.1 bits (167), Expect = 6e-12
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ- 746
L+ +++G ++ IVG G GK++ V L G + G++ ++A+ PQ
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY 360
Query: 747 ---NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803
L I K + +++ + ++ LSGG+ QR
Sbjct: 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQR 409
Query: 804 V 804
V
Sbjct: 410 V 410
Score = 41.9 bits (99), Expect = 8e-04
Identities = 35/135 (25%), Positives = 47/135 (34%), Gaps = 37/135 (27%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEM------DKISGRVNTK---------------- 733
V+EG +V IVG G GKS+ V L G++ D S +
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 734 GSIAFVPQQAWIQNATLRDNIVFGKTH----VPRRYNKVIDACALTPDFEMLPAGDSTEI 789
G I V + Q L V GK K+ + E+ + EI
Sbjct: 104 GEIRPVVK---PQYVDLIPKAVKGKVIELLKKADETGKLEEVVK---ALELENVLER-EI 156
Query: 790 GEKGINLSGGQKQRV 804
LSGG+ QRV
Sbjct: 157 QH----LSGGELQRV 167
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 66.1 bits (162), Expect = 7e-12
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 655 TGVYSSFTDPLV-IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKS 713
+G+ + L+ ++ + L+ I+ ++ +G + G GAGK+
Sbjct: 11 SGLVPRGSHMLIQLDQIGRMKQGK---------TILKKISWQIAKGDKWILYGLNGAGKT 61
Query: 714 SLVSALCGEMDKISGRVNTKG---------------SIAFVPQ---QAWIQNATLRDNIV 755
+L++ L SG VN G I FV + + + + D ++
Sbjct: 62 TLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121
Query: 756 FGKTHVPRRYNKVID-----ACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
G Y + D A L M IG LS G+KQRV
Sbjct: 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-IGY----LSTGEKQRV 170
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 66.2 bits (162), Expect = 3e-11
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ-- 746
L+ +R+G ++ IVG G GK++ V L G + G+V ++A+ PQ +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431
Query: 747 --NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
L I K + +++ + ++ +LSGG+ QRV
Sbjct: 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQRV 480
Score = 46.5 bits (111), Expect = 3e-05
Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 34/166 (20%)
Query: 663 DPLVIENGTFTWERN-TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
+ + I N + + G + + V++G +V IVG G GK++ V L G
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAF--VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139
Query: 722 EMDKISGRVNTK----------------------GSIAFVPQQAWIQNATLRDNIVFGKT 759
++ N G I V + Q L V GK
Sbjct: 140 QLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK---PQYVDLLPKAVKGKV 196
Query: 760 H-VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ ++ ++V + + E+ D E+ + LSGG+ QRV
Sbjct: 197 RELLKKVDEVGKFEEVVKELELENVLDR-ELHQ----LSGGELQRV 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 2e-10
Identities = 62/418 (14%), Positives = 134/418 (32%), Gaps = 84/418 (20%)
Query: 543 DLDRGFTIDYSFVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVI--ENVC--VV 598
D + G Y Y ++S+ F + F V + P I + ++
Sbjct: 8 DFETG-EHQYQ-------YKDILSVFEDAFVDN----FDCKDVQDMPKSILSKEEIDHII 55
Query: 599 VAKGTIRAARRLHLMVLTNILHSCMSFFDT---TPLGRILSRCGKDVDTVDNILPNLLLT 655
++K + RL +L+ F + ++S + P+++ T
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-----KTEQRQPSMM-T 109
Query: 656 GVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSL 715
+Y D L +N F + N + L+ + +R V I G +G+GK+ +
Sbjct: 110 RMYIEQRDRLYNDNQVFA-KYNVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 716 VSALC---GEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPR-RYNKVIDA 771
+C K+ ++ F W+ + P +
Sbjct: 167 ALDVCLSYKVQCKMDFKI-------F-----WLN---------LKNCNSPETVLEMLQKL 205
Query: 772 CA-LTPDFEMLPAGDSTEIGEKGINLSGGQKQR-VKWQVYLHYLKSIGLPLSMAAILLNI 829
+ P++ D + + I+ + +R +K + Y + L L +LLN+
Sbjct: 206 LYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCL----L------VLLNV 253
Query: 830 ----AFQGFAIGSNIWLSVWSEDKSTI----VNGTQDVGKRDLYLGVYGALGLGQVLSVL 881
A+ F + I L + + K T + + + +L L
Sbjct: 254 QNAKAWNAFNLSCKI-L-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 882 TSSIC-----VAEGSLLASSVLHEFLLTRVFSAVIQFFDTTPQGRIISRFSKDVDILD 934
V + S++ E + R A + ++ + +++L+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 48.3 bits (114), Expect = 1e-05
Identities = 78/571 (13%), Positives = 169/571 (29%), Gaps = 156/571 (27%)
Query: 491 DDSHVLDA-QIAFVSLSLFNILRFP--LSMLPMLISQLVQASVSVKRINSFMNQEDLDRG 547
D V D + + +I+ +S L L+ + + F+ E++ R
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFV--EEVLR- 88
Query: 548 FTIDYSFVSYMVYYPCVISLLILNFFADA-------APTFSEYPVTEDPLVIENVCVVVA 600
I+Y F+ + ++ + + F++Y V+ ++
Sbjct: 89 --INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK------- 139
Query: 601 KGTIRAA----RR-----LHLM------VLTNILHSCMSF-FDTTPLGRI----LSRCGK 640
+R A R + + + L C+S+ +I L C
Sbjct: 140 ---LRQALLELRPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 641 DVDTVDNILPNLL--LTGVYSSFTD-----PLVIENGT------FTWERNTEG----EGA 683
++ +L LL + ++S +D L I + +
Sbjct: 195 PETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 684 ESPPTLQ--NINMRV----REGTLVAIVGSVGAGKSSLVSALCG----EMDKISGRVNTK 733
++ N++ ++ R + + + SL E+ + +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LD 312
Query: 734 GSIAFVPQQAWIQN--------ATLRDNIV---FGKTHVPRRYNKVIDAC--ALTPD--- 777
+P++ N ++RD + K + +I++ L P
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 778 --FEML---------PAG------------DSTEIGEKGINLSGGQKQRVKWQVYLH--Y 812
F+ L P D + K S +KQ + + + Y
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 813 LKSIGLPLSMAAI---LLNIAFQGFAIGSNIWLSVWSEDK----------STIVNGTQDV 859
L+ + A+ +++ + + L D+ I + +
Sbjct: 433 LELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 860 GKRDLYLGVYGALG-LGQVLSVLTSSICVAEGSLLASSVLHEFLLTRVFSAVIQFFDTTP 918
R ++L L Q + S+ A GS+L + L + + + I D
Sbjct: 492 LFRMVFLD----FRFLEQKI-RHDSTAWNASGSIL--NTLQQL---KFYKPYICDNDPKY 541
Query: 919 QGRI--ISRF----------SKDVDILDNAI 937
+ + I F SK D+L A+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 45.6 bits (107), Expect = 8e-05
Identities = 78/581 (13%), Positives = 168/581 (28%), Gaps = 178/581 (30%)
Query: 16 YGLFIGEGYAVTYTSPAIKFVTFL-----LLG---ALILLNRTRG-----LRTSGCIFLF 62
Y F+ P++ ++ L N +R LR +
Sbjct: 91 YK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------ 143
Query: 63 VSLLAL-------------CGAPQYRTELTASLTRGFTIDYSFVSYMVYY--------PC 101
LL L G +T + + + + + +++ P
Sbjct: 144 --LLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPE 196
Query: 102 VISLLILNFFADAAPTFSEYPVTENPSPEYRASFPSKLIFAWFDRMAWLGYRKPLEN--- 158
+ ++ P + T I A R L KP EN
Sbjct: 197 TVLEMLQKLLYQIDPNW-----TSRSDHSSNIKLRIHSIQAELRR---LLKSKPYENCLL 248
Query: 159 --KDLWNLNHEDTSKEIVPLFDKHWNESLRKAARSQQTTPGTQAAYLKNSSNID-IAANG 215
++ N + F+ + TT + D ++A
Sbjct: 249 VLLNVQN-------AKAWNAFNLS--------CKILLTT--------RFKQVTDFLSAAT 285
Query: 216 STRPPQDTSKKP---------------------PAQA--------SIVGALCKTFGPTFL 246
+T D P + SI+ + T+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 247 FGSSLKLIQDLLTFVSPQILSWLIE-FVNEPNAPLWKGYFYAILLLVTSV-VQTLLLSTY 304
D V+ L+ +IE +N ++ F + + S + T+LLS
Sbjct: 345 ---------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 305 FDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNL-MSVDAQRMD-------- 355
+ + + + + +++ +++ +L KE+T+ I ++ + + + +
Sbjct: 396 WFDVIKSDVMV---VVNKLHKYSLVEKQP--KESTIS-IPSIYLELKVKLENEYALHRSI 449
Query: 356 ITPY---LNMLWSAPLQIGLALYFLWGI---LGPSVLAGLAVMVILIPVN-GYVATRIRN 408
+ Y + L YF I L + ++ ++ ++ +IR+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 409 LQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAAT 468
+ +A ++N + LK Y + I K +NA
Sbjct: 510 DST----AWNASGSILNTLQ----QLKFY------KPYICDNDP------KYERLVNAIL 549
Query: 469 SFIWSCAPFLV-----SLVSFAVYLLSDDSHVL-DA--QIA 501
F+ L+ L+ A L+++D + +A Q+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIA--LMAEDEAIFEEAHKQVQ 588
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 59.4 bits (145), Expect = 5e-10
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 26/130 (20%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--------NTKGSIAFVP 740
L+ I M + +G +V G G GK++L+ + + + G + KG I F+P
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 741 QQAWI-QNATLRDNIVF-----GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGI 794
++ + + ++ D + G +++ + ++ +K
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------------LDLKKKLG 132
Query: 795 NLSGGQKQRV 804
LS G +RV
Sbjct: 133 ELSQGTIRRV 142
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 58.4 bits (142), Expect = 2e-09
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
+ + N + + R T E L+N+++ + EG + + G+ G+GKS+L+ + G +
Sbjct: 2 RIEVVNVSHIFHRGTPLEK----KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57
Query: 724 DKISGRVNTKG----------SIAFVPQQAWIQ--NATLRDNIVFG------KTHVPRRY 765
+ SG V G +I Q Q + D + F
Sbjct: 58 EPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 117
Query: 766 NKVIDACALTPDFEMLPAGDSTEIGEKG-INLSGGQKQRV 804
K ++ L D ++ LSGG+K+RV
Sbjct: 118 KKAMEFVGLDFD----------SFKDRVPFFLSGGEKRRV 147
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 57.7 bits (140), Expect = 4e-09
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----- 734
+L+NIN+ V G V I+G G+GK++L+ A+ G + SG + G
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 735 ---SIAFVPQ--QAWIQNATLRDNIVFGKT--HVPR-RYNKVIDACALTPDFEMLPAGDS 786
I + +A+ T+ D + + + R + +++ A L +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL------- 122
Query: 787 TEIGEKGIN-LSGGQKQRV 804
+ + LS GQ V
Sbjct: 123 ----RRKLYKLSAGQSVLV 137
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 58.9 bits (143), Expect = 5e-09
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFVPQQAWI- 745
L N +EG ++ I+G G GK++ L GE+ G V + +++ PQ+ +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 746 QNATLR----DNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQK 801
+ T++ + + + +V L E +LSGG+
Sbjct: 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGEL 391
Query: 802 QRV 804
Q++
Sbjct: 392 QKL 394
Score = 45.4 bits (108), Expect = 8e-05
Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 40/149 (26%)
Query: 685 SPPTLQNINMRV-REGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-------- 735
+ + + T++ ++G G GK++++ L GE+ G N+K
Sbjct: 10 KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRF 69
Query: 736 ----IAFVPQQAW---------IQNATLRDNIVFGKTH-------VPRRYNKVIDACALT 775
I ++ + IQ + G + + ++V +
Sbjct: 70 RGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKE----- 124
Query: 776 PDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
M + + LSGG QR+
Sbjct: 125 -LLNMTNLWNK-DANI----LSGGGLQRL 147
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 56.4 bits (137), Expect = 7e-09
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 28/132 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
L ++ VR G ++ +VG GAGKS+L++ + G G + G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 736 IAFVPQQAWIQ-NATLRDNIVFGKT-HVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793
A++ QQ + + + R + D + +
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK--TRTELLNDVAGAL---------ALDDKLGRS 123
Query: 794 IN-LSGGQKQRV 804
N LSGG+ QRV
Sbjct: 124 TNQLSGGEWQRV 135
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 55.6 bits (135), Expect = 2e-08
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 44/170 (25%)
Query: 660 SFTDPLV-IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSA 718
S D ++ +E + + T L+ INM ++ G + AI+G G GKS+L
Sbjct: 2 SLEDYILKVEELNYNYSDGT--------HALKGINMNIKRGEVTAILGGNGVGKSTLFQN 53
Query: 719 LCGEMDKISGRVNTKG-SIAFVPQQAWI---------QN-------ATLRDNIVFG---- 757
G + SGR+ I + + Q+ A++ ++ FG
Sbjct: 54 FNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM 113
Query: 758 ---KTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ + +R + + + + LS GQK+RV
Sbjct: 114 KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----------CLSFGQKKRV 152
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 51.7 bits (125), Expect = 3e-07
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 49/144 (34%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
++ I+++V G +V ++G+ GAGK++ +SA+ G + G++ G
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 736 -IAFVPQQAWI-QNATLRDNIVFG------KTHVPRRYNKVIDACALTPDFEMLP----- 782
IA VP+ I T+ +N++ G K + R + F + P
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI---------FSLFPRLKER 132
Query: 783 ----AGDSTEIGEKGINLSGGQKQ 802
G LSGG++Q
Sbjct: 133 LKQLGG----------TLSGGEQQ 146
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 49.5 bits (119), Expect = 2e-06
Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 31/136 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV------------NTKGSI 736
L+ I+ + EG + ++G GAGK++ + + + SG V + I
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 737 AFVPQQAWI-QNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+++P++A +N + + F + + + + L +
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------K 139
Query: 789 IGEKGINLSGGQKQRV 804
I ++ S G +++
Sbjct: 140 IKDRVSTYSKGMVRKL 155
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 49.6 bits (119), Expect = 3e-06
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 35/140 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG--------------EMDKISGR--VNT 732
L N+++ V G + ++G+ GAGKS+L+ + E+ +S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 733 KGSIAFVPQQA-WIQNATLRDNIVF-------GKTHVPRRYNKVIDACALTPDFEMLPAG 784
+ I + Q + + T+ N+ K V RR +++ L + P+
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS- 162
Query: 785 DSTEIGEKGINLSGGQKQRV 804
NLSGGQKQRV
Sbjct: 163 ----------NLSGGQKQRV 172
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 48.9 bits (116), Expect = 9e-06
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 675 ERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--NT 732
S P + +IN + + +A++G GAGKS+L++ L GE+ SG V +
Sbjct: 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734
Query: 733 KGSIAFVPQQA 743
IA++ Q A
Sbjct: 735 NCRIAYIKQHA 745
Score = 47.7 bits (113), Expect = 2e-05
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCG-EMDKISGRVNTKGSIAFVPQ--QA 743
L +R++ I G G GKS+L+ A+ ++D + + +V
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDIDG 506
Query: 744 WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQR 803
+ ++ D + + T + +P LSGG K +
Sbjct: 507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA----------LSGGWKMK 556
Query: 804 V 804
+
Sbjct: 557 L 557
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 43.3 bits (103), Expect = 1e-04
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTKG------------- 734
L+ I++ V++G V+I+G+ G+GKS+L+ L G +D G+V +G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 735 ----SIAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
+ FV Q I T +N++ VP A +L +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVI-----VPMLKMGKPKKEAKERGEYLL---SELGL 130
Query: 790 GEKGIN----LSGGQKQRV 804
G+K LSGG++QRV
Sbjct: 131 GDKLSRKPYELSGGEQQRV 149
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 42.1 bits (100), Expect = 3e-04
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 40/154 (25%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDK-ISGRVNTKG---- 734
G E L+N+N+ ++EG V+I+G G+GKS++++ + G +DK G V
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTN 70
Query: 735 -------------SIAFVPQQ-AWIQNATLRDN-----IVFGKTHVPRRYNKVIDACALT 775
I FV QQ I T +N I + + + L
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL- 129
Query: 776 PDFEMLPAGDSTEIGEKGIN-----LSGGQKQRV 804
E+ E+ N LSGGQ+QRV
Sbjct: 130 ---------KMAELEERFANHKPNQLSGGQQQRV 154
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 41.9 bits (99), Expect = 7e-04
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 37/143 (25%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--------RVNTKGSIAF 738
L N+N+ + G I+G GAGK++ + + G +D S V + G +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIV 77
Query: 739 VPQQAWI----QN-A-----TLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEML 781
P+ I Q A T +NI F K + +R +V +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 782 PAGDSTEIGEKGINLSGGQKQRV 804
P LSG Q+QRV
Sbjct: 138 PR-----------ELSGAQQQRV 149
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 40.7 bits (96), Expect = 0.002
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 42/146 (28%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSL---------VSALCGEMDKISGR-VNTKGSI 736
++ +++ V++G + ++G G GK++ S G++ I + V
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR--GQI-YIGDKLVADPEKG 73
Query: 737 AFV-PQQAWI----QN-A-----TLRDNIVFG-------KTHVPRRYNKVIDACALTPDF 778
FV P+ I Q+ A T+ DNI F + + +R +V + LT
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL 133
Query: 779 EMLPAGDSTEIGEKGINLSGGQKQRV 804
P LSGGQ+QRV
Sbjct: 134 NRKPR-----------ELSGGQRQRV 148
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 39.1 bits (92), Expect = 0.004
Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 41/149 (27%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSAL-------CGEM----DKISGRVNTKGS-- 735
L+ ++++ R G +++I+GS G+GKS+ + + G + I+ + G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 736 -------------IAFVPQQ--AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEM 780
+ V Q W + T+ +N++ V AL +
Sbjct: 82 VADKNQLRLLRTRLTMVFQHFNLW-SHMTVLENVMEAPIQVLGLSKHDARERAL----KY 136
Query: 781 LPAGDSTEIGEKG-----INLSGGQKQRV 804
L I E+ ++LSGGQ+QRV
Sbjct: 137 L---AKVGIDERAQGKYPVHLSGGQQQRV 162
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 38.7 bits (91), Expect = 0.005
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 33/139 (23%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------- 735
L+ IN+ +REG +V ++G G+GKS+ + L D G + G
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 736 --IAFVPQQ----AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
+ V Q+ + T+ +NI V + + +A A+ E+L D +
Sbjct: 100 EEVGMVFQRFNLFP---HMTVLNNITLAPMKVRKWPREKAEAKAM----ELL---DKVGL 149
Query: 790 GEKG----INLSGGQKQRV 804
+K +LSGGQ QRV
Sbjct: 150 KDKAHAYPDSLSGGQAQRV 168
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 39.1 bits (92), Expect = 0.005
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 42/143 (29%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--------RVNTKGS--- 735
+ ++ V++G VA++G G GK++ + L G + K + VN
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKYR 75
Query: 736 -IAFVPQQAWIQN-A-----TLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEML 781
+ V QN A T+ +NI F K V +R ++ + +
Sbjct: 76 EVGMV-----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 782 PAGDSTEIGEKGINLSGGQKQRV 804
P LSGGQ+QRV
Sbjct: 131 PT-----------QLSGGQQQRV 142
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 39.1 bits (92), Expect = 0.006
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 32/138 (23%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG--------RVNTKGS--- 735
L NIN+++++G +A++G G+GKS+L+ + G + K + V
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPKDR 75
Query: 736 -IAFVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDS 786
+ V Q A + T+ NI F + + ++ +V + P
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW--- 132
Query: 787 TEIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 133 --------QLSGGQQQRV 142
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 38.8 bits (91), Expect = 0.008
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 30/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-----------IA 737
++ ++ ++REG +V ++G G+GK++++ + G G V G +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 738 FVPQQ-AWIQNATLRDNIVFG----KTHVPRRYNKVIDACALT--PDFEM-LPAGDSTEI 789
V Q A Q+ T+ DN+ FG + +V + + P
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------ 144
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 145 -----ELSGGQQQRV 154
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 38.8 bits (91), Expect = 0.008
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 36/140 (25%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSL---------VSALCGEMDKISGR-VNTKGS- 735
+ +N+ +++G + ++G G GK++ + G + R V
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE--GRI-YFGDRDVTYLPPK 81
Query: 736 ---IAFVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAG 784
I+ V Q A + T+ +NI F K + +R + + PA
Sbjct: 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA- 140
Query: 785 DSTEIGEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 141 ----------QLSGGQRQRV 150
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 38.8 bits (89), Expect = 0.010
Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 689 LQNINMRVREGTL-VAIVGSVGAGKSSLVSALCGE 722
+ + +++G + ++G + GKS+ ++AL GE
Sbjct: 58 ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGE 92
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 37.8 bits (87), Expect = 0.018
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMD 724
VA+ G G+GKSS ++ L G +
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGN 94
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 37.5 bits (88), Expect = 0.019
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 46/145 (31%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSL---------VSALCGEMDKISGR-VNTKGS- 735
++IN+ + EG V VG G GKS+L +++ G++ I + +N
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDL-FIGEKRMNDTPPA 73
Query: 736 ---IAFVPQQAWIQN-A-----TLRDNIVFG-------KTHVPRRYNKVIDACALTPDFE 779
+ V Q+ A ++ +N+ FG K + +R N+V + L +
Sbjct: 74 ERGVGMV-----FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD 128
Query: 780 MLPAGDSTEIGEKGINLSGGQKQRV 804
P LSGGQ+QRV
Sbjct: 129 RKPK-----------ALSGGQRQRV 142
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 37.5 bits (88), Expect = 0.019
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGE 722
V EG I G AGKS+L++ L G+
Sbjct: 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQ 256
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 37.5 bits (88), Expect = 0.021
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALCGE 722
R G VAIVG GKSSL++A
Sbjct: 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 37.1 bits (87), Expect = 0.025
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALCGE 722
G + IVG GKS+L++ L E
Sbjct: 241 NRGLRMVIVGKPNVGKSTLLNRLLNE 266
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 35.6 bits (83), Expect = 0.030
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGE 722
G V I G AGKSSL++AL G
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGR 27
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 34.7 bits (79), Expect = 0.075
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 692 INMRVR-EGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT--------KGSIAFVPQQ 742
+NM G ++ + G G+GKS++ AL ++ G I Q
Sbjct: 1 MNMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQ 60
Query: 743 AWIQNATLRDNIVF-GKTHVPRRYNKVIDACALTPDF 778
+ QN + + Y ++D + PD+
Sbjct: 61 SHQQNRMIMQIAADVAGRYAKEGYFVILDG-VVRPDW 96
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 34.9 bits (81), Expect = 0.079
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
+ GEG ++ PT + G +V + G GKS++V L + +
Sbjct: 1 SVGEGPDTKPTARGQPAA--VGRVVVLSGPSAVGKSTVVRCLRERIPNL 47
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 35.2 bits (82), Expect = 0.080
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 34/139 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L +I++ + G ++ I+G+ G GK++L+ L G SG ++ G
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 735 -SIAFVPQQ-AWIQNATLRDNIVFG--KTHVPR--RYNKVIDACALT--PDFEM-LPAGD 785
+ ++ Q+ + T+ NI +G ++ LT + P
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH-- 137
Query: 786 STEIGEKGINLSGGQKQRV 804
LSGGQ+QR
Sbjct: 138 ---------ELSGGQQQRA 147
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 34.4 bits (80), Expect = 0.12
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTKGSIAF 738
L+ +N+ V +G + A++G GAGKS+L L G+ + + +G I
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-----ERGEILL 64
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 34.4 bits (80), Expect = 0.13
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 25/129 (19%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS-----------IAFV 739
N++ + ++G GAGKS + + G + G V G+ I FV
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 740 PQQ-AWIQNATLRDNIVFGKTHVPR--RYNKVIDACALTPDFEMLPAGDSTEIGEKGIN- 795
PQ A + ++ NI +G +V R R +V + + ++
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL---------GIAHLLDRKPAR 126
Query: 796 LSGGQKQRV 804
LSGG++QRV
Sbjct: 127 LSGGERQRV 135
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 34.1 bits (79), Expect = 0.16
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD-KISGRVNTKGSIAF 738
L+ +++ V G + AI+G G+GKS+L + L G D ++ T G++ F
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----TGGTVEF 81
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 33.6 bits (78), Expect = 0.20
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDK 725
M +G L+ + G G GK ++ + +
Sbjct: 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 33.6 bits (78), Expect = 0.21
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
L +++ V +G + I+G G+GKS+L++ + G + GRV +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 33.7 bits (77), Expect = 0.29
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALC 720
+ + + G GAGKSSL A+
Sbjct: 22 QSGITVVEGPNGAGKSSLFEAIS 44
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 33.2 bits (76), Expect = 0.30
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
L+ ++ R LVA+ G+ G+GKS+L + L +
Sbjct: 12 LERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA 53
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 32.7 bits (75), Expect = 0.32
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 701 LVAIVGSVGAGKSSLVSALC 720
+ I+G G+GKSSL+ A+
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 33.0 bits (76), Expect = 0.36
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 700 TLVAIVGSVGAGKSSLVSALCGEM 723
V I+G++G+GK+ L+ +
Sbjct: 31 VAVNIMGAIGSGKTLLIERTIERI 54
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 33.3 bits (76), Expect = 0.36
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 675 ERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV---- 730
E ++ L + V I G G GKS+ + AL + + RV
Sbjct: 55 ESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114
Query: 731 ------NTKGSI 736
T GSI
Sbjct: 115 VDPSSTRTGGSI 126
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 33.1 bits (75), Expect = 0.38
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744
+ E A+V G + ++A+ ++ ++ VP +
Sbjct: 111 YSALTSNNEE--CTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGF 164
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.41
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 20/42 (47%)
Query: 410 QIKQMKSKDARVKLMNEVLSGIKVLKLYAWE----LSFQEQI 447
+K++++ LKLYA + L+ + +
Sbjct: 21 ALKKLQAS----------------LKLYADDSAPALAIKATM 46
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 32.6 bits (75), Expect = 0.43
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 700 TLVAIVGSVGAGKSSLVSALCGEM 723
+G++G+GK+ L+ L +
Sbjct: 39 VAFDFMGAIGSGKTLLIEKLIDNL 62
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.49
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALC 720
E +VAI+G G+GKSS+ A+
Sbjct: 24 EKGIVAIIGENGSGKSSIFEAVF 46
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.5 bits (74), Expect = 0.51
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
V ++G G GKSS V++L GE
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 32.9 bits (76), Expect = 0.57
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVS 717
L N+++R G + ++ G G+GKS+LVS
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 32.5 bits (75), Expect = 0.69
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
VAIVG GKS+L +A+ +
Sbjct: 183 VAIVGRPNVGKSTLFNAILNK 203
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 31.2 bits (71), Expect = 0.70
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 701 LVAIVGSVGAGKSSLVSALC 720
+ I+G G+GKSSL+ A+
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.5 bits (74), Expect = 0.72
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 675 ERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV---- 730
E A S L I + + G+ GAGKS+ + A + + +V
Sbjct: 32 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91
Query: 731 ------NTKGSI 736
T GSI
Sbjct: 92 VDPSSPVTGGSI 103
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 32.3 bits (74), Expect = 0.76
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 16/86 (18%)
Query: 299 LLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMDITP 358
+ + + + R + L + + T G+ ++L+ D+ P
Sbjct: 109 AMHAEMWGLLAEGLARGLFPP------EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRP 162
Query: 359 --YLNM--------LWSAPLQIGLAL 374
Y M APL++G L
Sbjct: 163 EDYFRMVAHKAAYYTAVAPLRLGALL 188
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 32.5 bits (75), Expect = 0.77
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+ I++ G L ++ G G+GKS+LV
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLV 685
Score = 31.0 bits (71), Expect = 2.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+++++ + L+ G G+GKSSL
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLA 63
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 31.7 bits (73), Expect = 0.80
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALCGEMDK 725
G L+ + G G GK ++ A+ + +
Sbjct: 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 32.5 bits (75), Expect = 0.85
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+N+++++ GT VA+ G G+GKS+LV
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 29.8 bits (68), Expect = 4.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+NI++ + G LV + G G+GKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 32.4 bits (75), Expect = 0.87
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+NI++ + G V + G G+GKSSLV
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLV 627
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 32.1 bits (74), Expect = 0.90
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-SIAFV-PQQAWI- 745
L N++++V G I+G GAGK+ + + G SGR+ G + + P++ I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 746 ---QN-A-----TLRDNIVFG--KTHVPRRYNKVIDACALT--PDFEM-LPAGDSTEIGE 791
QN + ++ N+ FG + +V+D P
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPL-------- 126
Query: 792 KGINLSGGQKQRV 804
LSGG++QRV
Sbjct: 127 ---TLSGGEQQRV 136
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.0 bits (73), Expect = 0.90
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 675 ERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
E A + + + V I G G GKS+ + AL + +V
Sbjct: 31 ESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 32.1 bits (74), Expect = 0.91
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
++G GKSSLV+A+ GE
Sbjct: 178 FCLIGRPNVGKSSLVNAMLGE 198
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 32.1 bits (74), Expect = 1.0
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLV 716
L+N+++++ GT VA+ G G+GKS+LV
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 31.4 bits (72), Expect = 1.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
+ + + + +GTL + GAGKSSL+ AL
Sbjct: 2 GSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQAL 36
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.5 bits (72), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
+ + G GKSS ++AL G+ +S
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ--NVS 60
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 31.1 bits (70), Expect = 1.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 670 GTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGE 722
G T+ T+ + E L N+ + ++G G GKSS V+++ GE
Sbjct: 13 GINTFAPATQTKLLE---LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 31.1 bits (69), Expect = 1.9
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 27/148 (18%)
Query: 626 FDTTPLGRILSR--CGKDVDTVDNILPNL-----------LLTGVYSSFTDPLVIENGTF 672
F T L ++ + + V+N+ P L V S+TD + GT
Sbjct: 195 FSDTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTS 254
Query: 673 TWERNTEGEGA--ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
W +GE PT N+ + + + G+ +
Sbjct: 255 VWYHVLKGEKIFYLIRPTNANLTLFECW---------SSSSNQN--EMFFGDQVDKCYKC 303
Query: 731 NTK-GSIAFVPQQAWIQNATLRDNIVFG 757
+ K G F+P T D + FG
Sbjct: 304 SVKQGQTLFIPTGWIHAVLTPVDCLAFG 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.6 bits (70), Expect = 1.9
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 685 SPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
T +M G ++ + G GK+++ + L
Sbjct: 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKL 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 30.7 bits (69), Expect = 2.3
Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 24/191 (12%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQ--QAWIQ 746
++ I + G V + G G GK++L A+ E+ GS + + + +
Sbjct: 53 VELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVL 112
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806
R I Y + LTP P G + I K +
Sbjct: 113 MENFRRAIGLRIKETKEVYEGEVT--ELTPCETENPMGGYGKTISHVIIGLKTAKGTKQ- 169
Query: 807 QVYLHYLKSIGLPLSMAAILLNIAFQGFAIGSNIWLSVWSEDKSTIVNGTQDVGKRDLYL 866
+ L S+ L + G I++ + ++ + G+ D Y
Sbjct: 170 ---------LKLDPSIFESLQK---ERVEAGDVIYI-----EANS--GAVKRQGRCDTYA 210
Query: 867 GVYGALGLGQV 877
+ V
Sbjct: 211 TEFDLEAEEYV 221
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.1 bits (67), Expect = 2.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
+M +G + I G+ G GK+S+ + E+D
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGF 37
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 30.2 bits (69), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727
+ + + L I GAGK+SLV AL + +I
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIK 35
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 30.7 bits (70), Expect = 2.6
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 695 RVREGT-LVAIVGSVGAGKSSLVSALCGE 722
R + IVG +GK+SL ++L G
Sbjct: 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGL 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.3 bits (68), Expect = 2.9
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 695 RVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIA 737
R G V +VG GKS+ ++ + E + V T
Sbjct: 156 YYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFP 198
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A {Homo
sapiens} PDB: 3s32_A
Length = 177
Score = 29.4 bits (65), Expect = 3.3
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 168 DTSKEIVPLFDKHWNESLRKAARSQQTTPGTQAAYLKNSSNIDIAANGSTRPPQDTSKKP 227
K+I+P DK+W + + T P + ++ + +D +
Sbjct: 98 SKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDY 157
Query: 228 P 228
P
Sbjct: 158 P 158
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 30.3 bits (69), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGE 722
G + G G GKSSL++AL G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLGL 238
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 29.7 bits (66), Expect = 4.1
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 681 EGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
E A + V I G++G+GK++ ++ + I
Sbjct: 3 EAASCARKGTKYAEGTQP-FTVLIEGNIGSGKTTYLNHFEKYKNDI 47
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.6 bits (65), Expect = 4.2
Identities = 14/74 (18%), Positives = 26/74 (35%)
Query: 700 TLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKT 759
T + G G+GK+SL SA+ E ++ P + +D +
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTP 93
Query: 760 HVPRRYNKVIDACA 773
+ R +I +
Sbjct: 94 YSNRMTEAIISRLS 107
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.5 bits (67), Expect = 4.3
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSAL 719
N+ + + ++G+ G G+S + +AL
Sbjct: 13 NLYFQGRKTLVLIGASGVGRSHIKNAL 39
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.4 bits (65), Expect = 5.0
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
T + + + + R++ ++I G++ AGKS+ V+ L
Sbjct: 6 TPPKRSCPSFSASSEGTRIK---KISIEGNIAAGKSTFVNIL 44
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta
protein, PSI, protein struct initiative; HET: TLA; 1.50A
{Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Length = 242
Score = 29.2 bits (65), Expect = 5.1
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 128 SPEYRASFPSKLIFAWFDRMAWLGYRKPLENK 159
SP Y + + +R+ + L K
Sbjct: 87 SPVYLQNVSVDTK-NFIERIGGWSHLFRLAGK 117
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 29.3 bits (67), Expect = 5.2
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
+AIVG GKS+L++ L G+ KIS
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ--KIS 34
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.5 bits (66), Expect = 5.3
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRV----------NTKGSI 736
V + G GAGKS+ + + + ++ + GS+
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSL 121
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 5.6
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 678 TEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728
E + P Q + +VG GAGKS+ +++ G SG
Sbjct: 11 RENLYFQGGPGRQEPRNSQLR---IVLVGKTGAGKSATGNSILGRKVFHSG 58
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 29.3 bits (67), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
VAIVG GKS+L++ L G K++
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV--KVA 33
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 6.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 682 GAESPPTLQNINMRVREGTL--VAIVGSVGAGKSSLVSALCG 721
G+ P Q V++G + +VG G GKS+L+++L
Sbjct: 1 GSNLPN--QVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFL 40
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.4 bits (67), Expect = 6.5
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
Query: 701 LVAIVGSVG---AGKSSLVSAL 719
L+A VG VG AGKSSL++A+
Sbjct: 156 LIADVGLVGYPNAGKSSLLAAM 177
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 29.2 bits (66), Expect = 6.6
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 554 FVSYMVYYPCVISLLILNFFADAAPTFSEYPVTEDPLVIENVCVVVAKGTIRAARRLHLM 613
F + M YP + +L F A T + + A L
Sbjct: 246 FDAVM-NYPL--ARAVLGFVGGEALDRDLAAQTGLGRIEP----LQALAFSHRLEDLFGR 298
Query: 614 VLTNILHSCMSFFDT--TPLGRILSRCGKDVD 643
++ + M+ + TP R+LS V+
Sbjct: 299 YRPEVVRAQMNLLTSHDTP--RLLSLMRGSVE 328
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.4 bits (65), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGR 729
L+ I M EG V IVG GK+SL LC K +
Sbjct: 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAY 168
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 29.0 bits (66), Expect = 7.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
VAIVG GKS+L++ L G K+S
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT--KVS 36
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.1 bits (65), Expect = 7.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732
R REG V +VG GKS+ ++ + E + T
Sbjct: 157 NRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT 195
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase,
thermostable protein,; 2.16A {Pyrococcus furiosus}
Length = 264
Score = 28.9 bits (65), Expect = 7.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVP 740
N + GTLV I A K + G S R+ T+G + F P
Sbjct: 58 NTYIVNGTLV-IE----ARKEIITDPNEGTFLYTSSRLKTEGKVEFSP 100
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.0 bits (64), Expect = 8.2
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 701 LVAIVGSVGAGKSSLVSALCGE 722
+V + G GK+S + L +
Sbjct: 67 MVLVAGQYSTGKTSFIQYLLEQ 88
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 28.4 bits (63), Expect = 9.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMD 724
+AI G+VGAGKS++ + + ++
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLG 25
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 28.9 bits (64), Expect = 9.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 701 LVAIVGSVGAGKSSLVSAL 719
++++ GS GAG S++
Sbjct: 7 IISVTGSSGAGTSTVKHTF 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.411
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,063,248
Number of extensions: 845802
Number of successful extensions: 2314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 173
Length of query: 950
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 847
Effective length of database: 3,825,930
Effective search space: 3240562710
Effective search space used: 3240562710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (27.9 bits)