RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16196
(950 letters)
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 121 bits (305), Expect = 4e-31
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
P L+NIN+ + +G ++AI GS G+GK+SL+ + GE++ G + G ++F Q +WI
Sbjct: 50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 109
Query: 747 NATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
T+++NI+FG ++ RY V+ AC L D D+T +GE G+ LSGGQ+ R+
Sbjct: 110 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 167
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 118 bits (297), Expect = 3e-30
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 664 PLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM 723
P+ I+ G + + P L++IN+ + +G VA VG G GKS+L++ +
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 724 DKISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVPR-RYNKVI 769
D SG++ G I V Q + + T+++NI+ G+ +
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
LP G TE+GE+G+ LSGGQKQR+
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 163
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 105 bits (264), Expect = 5e-26
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
L N TFT+ P L+NIN+++ G VA+VG G+GKS++ S + D
Sbjct: 14 LEFRNVTFTY-------PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVP--RRYNKVI 769
G + G +A V Q + N T+ +NI + +T + +
Sbjct: 67 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA 126
Query: 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ G T IGE G+ LSGGQ+QR+
Sbjct: 127 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 161
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 103 bits (257), Expect = 5e-25
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 665 LVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+ ++ +F + + LQ + +R G + A+VG G+GKS++ + L
Sbjct: 12 VQFQDVSFAYPNRPD------VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 725 KISGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVP--RRYNKVI 769
G++ G +A V Q+ + +L++NI +G T P
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 770 DACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
LP G TE+ E G LSGGQ+Q V
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAV 160
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 99.6 bits (248), Expect = 5e-24
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG--------- 734
+S L++I+ + +++A G G GKS++ S L +G + G
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 735 ----SIAFVPQQAWIQNATLRDNIVFG--KTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
I FV Q + I T+R+N+ +G + +V+D E +P +TE
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
Query: 789 IGEKGINLSGGQKQRV 804
+GE+G+ +SGGQ+QR+
Sbjct: 133 VGERGVKISGGQRQRL 148
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 94.6 bits (235), Expect = 3e-22
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 667 IENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
N F + +SP L NIN+ +++G ++ IVG G+GKS+L +
Sbjct: 4 FRNIRFRY-------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 56
Query: 727 SGRVNTKG-------------SIAFVPQQAWIQNATLRDNIVFGKTHVP-RRYNKVIDAC 772
+G+V G + V Q + N ++ DNI + +
Sbjct: 57 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 773 ALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKW 806
L G +T +GE+G LSGGQ+QR+
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 150
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 67.3 bits (164), Expect = 3e-13
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV--------NTKGSIAF 738
P L+ I M + +G +V G G GK++L+ + + + G + KG I F
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74
Query: 739 VPQQ-AWIQNATLRDNIVFGKTH--VPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGIN 795
+P++ + ++ D + + V N+++DA L + + ++ +K
Sbjct: 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA---------LESVEVLDLKKKLGE 125
Query: 796 LSGGQKQRVKWQVYL 810
LS G +RV+ L
Sbjct: 126 LSQGTIRRVQLASTL 140
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 62.1 bits (151), Expect = 3e-11
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIA 737
+ +N+ +++G + ++G G GK++ + + G + GR+ +I+
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 738 FVPQQAW-IQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
V Q + T+ +NI F K + +R + + PA
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------ 135
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 136 -----QLSGGQRQRV 145
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 61.1 bits (148), Expect = 9e-11
Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L +++ V +G + I+G G+GKS+L++ + G + GRV +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 735 SIAFVPQQA-WIQNATLRDNIVFGKTHVPRRYNKVIDACALTPD--------FEMLPAGD 785
I Q ++ T+ +N++ G+ + P F++L
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 786 STEIGEKGI-NLSGGQKQRVKWQVYLH 811
+ + ++ LSGGQ + V+ L
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALM 166
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 60.3 bits (146), Expect = 1e-10
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 35/149 (23%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----- 734
+G + L N+++ V G + ++G+ GAGKS+L+ + G V G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 735 -----------SIAFVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALT 775
I + Q + + T+ N+ K V RR +++ L
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131
Query: 776 PDFEMLPAGDSTEIGEKGINLSGGQKQRV 804
+ P+ NLSGGQKQRV
Sbjct: 132 DKHDSYPS-----------NLSGGQKQRV 149
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 59.2 bits (143), Expect = 3e-10
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 30/135 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIA 737
++IN+ + EG V VG G GKS+L+ + G SG + +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75
Query: 738 FVPQQAWIQ-NATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTEI 789
V Q + + ++ +N+ FG K + +R N+V + L + P
Sbjct: 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK------ 129
Query: 790 GEKGINLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 130 -----ALSGGQRQRV 139
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 59.1 bits (143), Expect = 3e-10
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 680 GEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG----- 734
G E L+N+N+ ++EG V+I+G G+GKS++++ + G V
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 735 ------------SIAFVPQQAW-IQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEML 781
I FV QQ I T +N+ R + + +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 782 PAGDSTEIGEKGINLSGGQKQRV 804
+ K LSGGQ+QRV
Sbjct: 132 AELEERFANHKPNQLSGGQQQRV 154
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 59.2 bits (143), Expect = 3e-10
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG---------------EMDKISGRVNTK 733
++ I+++V G +V ++G+ GAGK++ +SA+ G +K + +N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 734 GSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKG 793
G + T+ +N++ G + + D + F L + + G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL----KERLKQLG 137
Query: 794 INLSGGQKQRV 804
LSGG++Q +
Sbjct: 138 GTLSGGEQQML 148
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 58.5 bits (141), Expect = 6e-10
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 31/136 (22%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS------------I 736
L+ I+ + EG + ++G GAGK++ + + + SG V G I
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 737 AFVPQQAWI-QNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAGDSTE 788
+++P++A +N + + F + + + + L + +
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST---- 133
Query: 789 IGEKGINLSGGQKQRV 804
S G +++
Sbjct: 134 -------YSKGMVRKL 142
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 58.0 bits (140), Expect = 7e-10
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 28/132 (21%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------S 735
L ++ VR G ++ +VG GAGKS+L++ + G M G + G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 73
Query: 736 IAFVPQQAWIQ-NATLRDNIVFGKTHVPR--RYNKVIDACALTPDFEMLPAGDSTEIGEK 792
A++ QQ + + + R N V A AL +G
Sbjct: 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRS 122
Query: 793 GINLSGGQKQRV 804
LSGG+ QRV
Sbjct: 123 TNQLSGGEWQRV 134
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 57.2 bits (138), Expect = 2e-09
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 39/148 (26%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L+ ++++ R G +++I+GS G+GKS+ + + G + G
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 735 ------------SIAFVPQQ-AWIQNATLRDNIVFGKTHVPRRYNKVIDACALTPDFEML 781
+ V Q + T+ +N++ V AL + L
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL----KYL 133
Query: 782 PAGDSTEIGEKGIN-----LSGGQKQRV 804
I E+ LSGGQ+QRV
Sbjct: 134 ---AKVGIDERAQGKYPVHLSGGQQQRV 158
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 53.5 bits (128), Expect = 2e-08
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIA 737
L N++++V G I+G GAGK+ + + G SGR+ G IA
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 738 FVPQQ-AWIQNATLRDNIVF----GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK 792
FV Q + + ++ N+ F K P+R + + P
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------- 125
Query: 793 GINLSGGQKQRV 804
+ LSGG++QRV
Sbjct: 126 -LTLSGGEQQRV 136
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 319
Score = 54.2 bits (128), Expect = 3e-08
Identities = 32/308 (10%), Positives = 89/308 (28%), Gaps = 1/308 (0%)
Query: 237 LCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLI-EFVNEPNAPLWKGYFYAILLLVTSV 295
F + ++ +L L+ + + + + ++ L+
Sbjct: 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILR 69
Query: 296 VQTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNLMSVDAQRMD 355
T +S+Y + M + + ++ ++ T +
Sbjct: 70 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 129
Query: 356 ITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRNLQIKQMK 415
+ L + I ++ + + + I+ V+ R R++
Sbjct: 130 SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 189
Query: 416 SKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAATSFIWSCA 475
+ ++L G K + ++ + ++ K+ +K + ++ + I
Sbjct: 190 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 249
Query: 476 PFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQASVSVKRI 535
L L A V S L PL L + +Q + + + +
Sbjct: 250 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 309
Query: 536 NSFMNQED 543
+ ++ E
Sbjct: 310 FAILDSEQ 317
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 323
Score = 53.4 bits (126), Expect = 5e-08
Identities = 41/314 (13%), Positives = 106/314 (33%), Gaps = 8/314 (2%)
Query: 237 LCKTFGPTFLFGSSLKLIQDLLTFVSPQILSWLIEFVNEPNAPLWKGYFYAILLLVTSVV 296
K + + +I+ + + P ++ + I+ V +A + + + + +
Sbjct: 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIAL 67
Query: 297 QTLLLSTYFDRMFRVGMRMRSALISTIYRKALTISNNARKETTVGEIVNL--------MS 348
++ R + ++ + ++ +
Sbjct: 68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVIND 127
Query: 349 VDAQRMDITPYLNMLWSAPLQIGLALYFLWGILGPSVLAGLAVMVILIPVNGYVATRIRN 408
V+ + I L +W + I +AL ++ + LA L + I R+R
Sbjct: 128 VEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRK 187
Query: 409 LQIKQMKSKDARVKLMNEVLSGIKVLKLYAWELSFQEQILKIRSKEIKVLKEAAYLNAAT 468
L ++ ++ ++E + GI V+K +A E + + K + + + NA +
Sbjct: 188 LTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247
Query: 469 SFIWSCAPFLVSLVSFAVYLLSDDSHVLDAQIAFVSLSLFNILRFPLSMLPMLISQLVQA 528
+ + ++ V S + + +L PL L + L Q+
Sbjct: 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307
Query: 529 SVSVKRINSFMNQE 542
S+ R+ ++++
Sbjct: 308 FASMDRVFQLIDED 321
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 51.9 bits (124), Expect = 1e-07
Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNA 748
++ +++ V++G + ++G G GK++ + + G + G++ + P++
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 749 TLRDNIVFGKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEK-----GI--------- 794
RD + +++ + V D A +P + + + G+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 795 NLSGGQKQRV 804
LSGGQ+QRV
Sbjct: 139 ELSGGQRQRV 148
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 50.5 bits (120), Expect = 3e-07
Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 35/140 (25%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-------------- 734
L N+N+ + G I+G GAGK++ + + G +G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 735 --SIAFVPQQ-AWIQNATLRDNIVFG-------KTHVPRRYNKVIDACALTPDFEMLPAG 784
I V Q A N T +NI F K + +R +V + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR- 139
Query: 785 DSTEIGEKGINLSGGQKQRV 804
LSG Q+QRV
Sbjct: 140 ----------ELSGAQQQRV 149
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 48.1 bits (114), Expect = 1e-06
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 691 NINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG-----------SIAFV 739
N++ + ++G GAGKS + + G + G V G I FV
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 740 PQQ-AWIQNATLRDNIVFGKTHVPR--RYNKVIDACALTPDFEMLPAGDSTEIGEKGINL 796
PQ A + ++ NI +G +V R R +V + +L K L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL--------DRKPARL 127
Query: 797 SGGQKQRV 804
SGG++QRV
Sbjct: 128 SGGERQRV 135
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 41.1 bits (95), Expect = 2e-04
Identities = 11/83 (13%), Positives = 27/83 (32%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHV 761
+ I G G GK++LV + + K + T+ ++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 762 PRRYNKVIDACALTPDFEMLPAG 784
K++ + + + A
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAI 85
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 38.9 bits (89), Expect = 0.001
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
+ + VAIVG GKS+L +A+ + +
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERAL 35
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 38.5 bits (88), Expect = 0.002
Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 702 VAIVGSVGAGKSSLVSALCGE-------MDKISGRVNTKG-SIAFVPQQAWIQNATLRDN 753
+ I G +GK+SL++ L + + + G + V ++ +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 754 IVFGKTHVPRRYNKVIDACALTPDFE 779
+ + + ++D+
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLT 91
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 38.7 bits (89), Expect = 0.002
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 675 ERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
E A S L I + + G+ GAGKS+ + A + + +V
Sbjct: 30 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 37.4 bits (85), Expect = 0.003
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
V IVG GKS+L + L + I
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVED 30
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 37.4 bits (85), Expect = 0.003
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKI 726
VAIVG GKS+L++ L G
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAP 32
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 37.0 bits (84), Expect = 0.003
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKI 726
V I G AGKSSL++AL G I
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAI 28
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 37.0 bits (84), Expect = 0.004
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
+AIVG GKS+L++ L G+ I+ R
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSR 35
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 36.9 bits (84), Expect = 0.005
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
V +VG AGKSSL++A+ KI+
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPY 31
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 37.8 bits (87), Expect = 0.005
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 678 TEGEGAESPPTLQNINMRVREGTL-VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI 736
G + + + + L VA+ G G+GKSS ++ L G ++ G T +
Sbjct: 34 RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT--GV 91
Query: 737 AFVPQQAWIQNATLRDNIVF 756
V + N+VF
Sbjct: 92 VEVTMERHPYKHPNIPNVVF 111
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 37.0 bits (84), Expect = 0.007
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKI--SGRVNTKGSIAFVPQQAWIQNATLR 751
M++R +V+++G V GK++L+ + G +G + +P
Sbjct: 1 MKIRSP-IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDF 59
Query: 752 DNIVFGKTHVPRRYNKVIDACA 773
+ +P +
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHE 81
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 36.8 bits (84), Expect = 0.011
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 675 ERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
E A + + + V I G G GKS+ + AL + +V
Sbjct: 27 ESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 86
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 35.8 bits (81), Expect = 0.011
Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 7/123 (5%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNAT-----LRDNIVF 756
+ G GKS+L+ L G+ + R I + + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 757 GKTHVPRRYNKVIDACALTPDFEMLPAGDSTEIGEKGINLSGGQKQRVKWQVYLHYLKSI 816
+ + I+ A D +L G+ + +L+ +
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPI--DVEFYQFLREL 120
Query: 817 GLP 819
+P
Sbjct: 121 DIP 123
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 35.3 bits (80), Expect = 0.012
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKI 726
+ IVG GKS+L++ L E I
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAI 27
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 35.2 bits (80), Expect = 0.014
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 694 MRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDN 753
M V +VG +GK++L+ + RV G++ D+
Sbjct: 1 MNV-----WQVVGYKHSGKTTLMEKWVAAAVREGWRV---GTVKHHGHGGEPARPEGVDS 52
Query: 754 IVFGKTH 760
+ +
Sbjct: 53 VRHERAG 59
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 35.3 bits (80), Expect = 0.015
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732
V +VG GKS+L+S + KI+ T
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFT 34
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 35.9 bits (82), Expect = 0.017
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISG 728
L N+ + ++G G GKSS V+++ GE
Sbjct: 22 LGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS 61
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 35.5 bits (80), Expect = 0.023
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 688 TLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM-DKISGRVNTKGSIAFVPQQAWIQ 746
+ + + +EG + I+G G+GKSSL+ A+ + + + K V +
Sbjct: 13 SHSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYI 71
Query: 747 NATLRDNIVFGKTHVPRRYN 766
+ + +
Sbjct: 72 DLIFEKDGTKYRITRRFLKG 91
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 33.5 bits (75), Expect = 0.055
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCG 721
+NIN + I G + GK++L L
Sbjct: 3 FKNIN--------LGIFGHIDHGKTTLSKVLTE 27
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 33.6 bits (75), Expect = 0.069
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALCGEMDKI 726
G VA G AGKSS ++ L +
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLA 43
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 33.4 bits (75), Expect = 0.071
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
+ +VG V GK++LV A+ G +G
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRG 43
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.6 bits (75), Expect = 0.072
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+A+ G GKSS +++L
Sbjct: 26 IALAGRSNVGKSSFINSLIN 45
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 33.1 bits (74), Expect = 0.076
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHV 761
+ +G AGK++L+ L D+++ T + I+ T +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN--DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 60
Query: 762 PRRYNKVIDACALTPDF 778
+ Y ++ D
Sbjct: 61 WKDYFPEVNGIVFLVDA 77
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 33.4 bits (75), Expect = 0.095
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 702 VAIVGSVGAGKSSLVSALCG--EMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKT 759
V VG+ G+GK++L E + VN + +P + I +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 760 HVPRRYNKVIDACALTPDFEMLPA 783
V L F
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLN 86
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 32.7 bits (73), Expect = 0.12
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
G +V + G GKS++V L + + V
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 33.4 bits (75), Expect = 0.12
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Query: 660 SFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSAL 719
+FTD E +G+ A PT + G G+GK+SL SA+
Sbjct: 5 NFTDKQFENRLNDNLEELIQGKKAVESPTA------------FLLGGQPGSGKTSLRSAI 52
Query: 720 CGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHVPRRYNKVIDAC 772
E ++ P + +D + + R +I
Sbjct: 53 FEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL 105
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 32.5 bits (73), Expect = 0.13
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
GTL + GAGKSSL+ AL +V
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV 33
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 32.3 bits (72), Expect = 0.16
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 702 VAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKT 759
V VG +GK+ L L D + ++ + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 760 HVPRRYNKVIDACALTPD 777
+ R+ A D
Sbjct: 63 QLLDRFKSSARAVVFVVD 80
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.9 bits (71), Expect = 0.18
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ ++G AGK++++ GE
Sbjct: 5 LLMLGLDNAGKTTILKKFNGE 25
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.6 bits (70), Expect = 0.23
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ I+G GAGK++++ L
Sbjct: 8 ILILGLDGAGKTTILYRLQVG 28
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 32.5 bits (73), Expect = 0.23
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ +VGS +GKSS++ + G
Sbjct: 27 IVVVGSQSSGKSSVLENIVGR 47
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 32.4 bits (72), Expect = 0.25
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALC 720
E +I+G G+GKS+++ A+
Sbjct: 24 ESNFTSIIGPNGSGKSNMMDAIS 46
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 701 LVAIVGSVGAGKSSLVSALC---GEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVF- 756
+ AIVG G+GKS+++ A+ GE K R + K + F + + +VF
Sbjct: 26 VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFE 85
Query: 757 --GKTHVPRR 764
G+ R
Sbjct: 86 ENGEEITVAR 95
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 32.3 bits (72), Expect = 0.28
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 701 LVAIVGSVGAGKSSLVSALC 720
AIVG+ G+GKS++ A+
Sbjct: 28 FTAIVGANGSGKSNIGDAIL 47
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.2 bits (69), Expect = 0.28
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ +VG +GK++ V+ +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASG 25
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 32.0 bits (72), Expect = 0.33
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSI 736
+ I + AGK++ + +GR++ G +
Sbjct: 9 IGIAAHIDAGKTTTTERIL----YYTGRIHKIGEV 39
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 31.1 bits (69), Expect = 0.34
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMD 724
G ++ + G G+GKS++ AL
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPG 29
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.9 bits (71), Expect = 0.34
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 683 AESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEM----DKISGRVNTKGSIAF 738
A +PP L + + GT+ A+V GAGKS L L ++ D + G + +
Sbjct: 13 AAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIY 72
Query: 739 VPQQAWIQNATLR 751
+P + R
Sbjct: 73 LPAEDPPTAIHHR 85
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 31.5 bits (70), Expect = 0.34
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKG 734
+ +VG V GK++L AL G +G
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRG 40
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.4 bits (70), Expect = 0.35
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 701 LVAIVGSVGAGKSSLVSALCGEMDK 725
+ I G G GKS+L+ L E
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPD 27
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.1 bits (69), Expect = 0.37
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 701 LVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
V + G GAGKS+L+ L E I G
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFS 31
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 31.1 bits (70), Expect = 0.44
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
V +G V GK++L +AL + V K
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVK 37
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 31.6 bits (71), Expect = 0.45
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
++++ V GKS+L +L IS
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAA 47
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 30.9 bits (69), Expect = 0.49
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
+ ++G V GKS+LV L + I +
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEK 33
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 31.0 bits (69), Expect = 0.55
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
+ +G V AGKS+L + + R K
Sbjct: 27 IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEK 58
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.2 bits (69), Expect = 0.55
Identities = 10/78 (12%), Positives = 27/78 (34%)
Query: 687 PTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQ 746
+ + + R G ++ + G GKS+ V + G+ + ++
Sbjct: 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAED 82
Query: 747 NATLRDNIVFGKTHVPRR 764
L + + ++ +R
Sbjct: 83 LIGLHNRVRLRQSDSLKR 100
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 30.6 bits (68), Expect = 0.55
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 693 NMRVREGTLVAIVGSVGAGKSSLVSALCGEMD 724
+MR + ++G+ G G+ + + L +
Sbjct: 1 HMR----KTLVLLGAHGVGRRHIKNTLITKHP 28
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 31.0 bits (69), Expect = 0.64
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+A+VG AGKSS++ G
Sbjct: 29 IAVVGGQSAGKSSVLENFVGR 49
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.3 bits (67), Expect = 0.67
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKTHV 761
+ ++G AGK++L+ L + IS T+G Q +
Sbjct: 19 ILLLGLDNAGKTTLLKQLAS--EDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 76
Query: 762 PRRYNKVIDAC 772
R Y + D
Sbjct: 77 WRSYFENTDIL 87
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.70
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 701 LVAIVGSVGAGKSSLVSALC 720
+ I+G G+GKSSL+ A+
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 30.6 bits (68), Expect = 0.80
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGR 729
G+V GKS+L+ L + I
Sbjct: 12 FLTCGNVDDGKSTLIGRLLHDSKMIYED 39
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 30.2 bits (67), Expect = 0.89
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 702 VAIVGSVGAGKSSLVSAL 719
VA+VG G+GK++L AL
Sbjct: 5 VALVGHAGSGKTTLTEAL 22
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.7 bits (65), Expect = 1.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNT 732
V ++G G GKS+L + G D +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 36
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 29.6 bits (66), Expect = 1.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 702 VAIVGSVGAGKSSLVSAL 719
V +G V GK++L +A+
Sbjct: 6 VGTIGHVDHGKTTLTAAI 23
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.9 bits (66), Expect = 1.1
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 700 TLVAIVGSVGAGKSSLVSALCGEMDKISGRV 730
TL+ +VG GK+ + L ++ I
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 30.0 bits (67), Expect = 1.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
V ++G V +GKS+ L + I R K
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 40
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.3 bits (64), Expect = 1.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDK 725
V ++G+ G GKS+L G D
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDG 27
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 30.0 bits (67), Expect = 1.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 684 ESPPTLQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGS 735
SP + R G ++ + G +GK+ LV AL + +
Sbjct: 109 CSPVVAEFGGHRYASGMVI-VTGKGNSGKTPLVHALGEALGGKDKYATVRFG 159
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 1.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ +VG AGK++++ L
Sbjct: 3 ILMVGLDAAGKTTILYKLKLG 23
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.3 bits (64), Expect = 1.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
V I+G G GK+SL+ +
Sbjct: 5 VIILGDSGVGKTSLMHRYVND 25
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 1.6
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISG 728
V IVG AGK++++ +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTS 44
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 29.3 bits (64), Expect = 1.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
V I+G G GK+SL++ +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNK 25
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.2 bits (64), Expect = 1.9
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRV 730
V + G G GK++L+ + V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.8 bits (63), Expect = 2.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKISGRVNTK 733
+A G GK++L+ L + R
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.9 bits (63), Expect = 2.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ +G AGK++L+ L +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDD 36
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.5 bits (62), Expect = 2.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+AI+G GKSSL
Sbjct: 7 IAILGYRSVGKSSLTIQFVE 26
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 2.8
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 701 LVAIVGSVGAGKSSLVSAL 719
++ I G +GK++L + L
Sbjct: 24 VLGIDGLSRSGKTTLANQL 42
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 28.9 bits (64), Expect = 3.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 689 LQNINMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKIS 727
L I + +VAIVG GKS L++ L G+ S
Sbjct: 25 LSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKKKGFS 60
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.3 bits (62), Expect = 3.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ I+G+ GK+S + +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADD 28
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.1 bits (61), Expect = 3.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ +VG+ GKSS++ C
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 3.2
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 702 VAIVGSVGAGKSSLVSALCGE--MDKISGRVNTKGSIAFVPQQAWIQNATLRDNIVFGKT 759
+ ++GS G GKS+L ++K + L T
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 760 HVPRRYNKVIDACALTPD 777
+ Y K AL
Sbjct: 66 AMRDLYMKNGQGFALVYS 83
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.4 bits (62), Expect = 3.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 701 LVAIVGSVGAGKSSLVSAL 719
L+ + G +GKSS+ + +
Sbjct: 4 LIGVSGGTASGKSSVCAKI 22
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.1 bits (61), Expect = 3.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ +VG G GKS+L
Sbjct: 9 LVVVGGGGVGKSALTIQFI 27
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 28.5 bits (62), Expect = 3.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 698 EGTLVAIVGSVGAGKSSLVSALC 720
+ + + G GAGKS+ ++A
Sbjct: 23 DELVTTLSGGNGAGKSTTMAAFV 45
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Length = 181
Score = 28.2 bits (62), Expect = 3.5
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 507 LFNILRFPLSMLPMLISQLVQASVSVKRINSFMNQEDLDRGFTIDYS-FVSYMVYYPCVI 565
+ I++ M+ ++ S KR Q D +R + F+ P ++
Sbjct: 117 MLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIV 176
Query: 566 SLL 568
LL
Sbjct: 177 RLL 179
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.1 bits (61), Expect = 3.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ IVG GK+ L+ +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKD 25
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.9 bits (61), Expect = 3.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
V ++G G GKS+L+S
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRN 27
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.0 bits (61), Expect = 3.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ ++G +GKSSL+
Sbjct: 8 LGVLGDARSGKSSLIHRFL 26
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.9 bits (61), Expect = 3.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ I+G G GKSSL+ +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDD 30
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.4 bits (63), Expect = 4.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 701 LVAIVGSVGAGKSSLVSAL 719
++++ GS GAG S++
Sbjct: 6 IISVTGSSGAGTSTVKHTF 24
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.1 bits (61), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+AI G G GKS+LV +
Sbjct: 5 LAIFGRAGVGKSALVVRFLTK 25
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.9 bits (62), Expect = 4.2
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSAL 719
G V I G G GKS L
Sbjct: 11 DIYGLGVLITGDSGVGKSETALEL 34
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.8 bits (61), Expect = 4.5
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ ++G G GK+ ++ +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSED 29
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.0 bits (61), Expect = 4.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 697 REGTLVAIVGSVGAGKSSLVSALC 720
R G L+ + G AGKS+ L
Sbjct: 1 RRGALIVLEGVDRAGKSTQSRKLV 24
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.5 bits (60), Expect = 4.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
V +VG G GK+ L+
Sbjct: 9 VMLVGDSGVGKTCLLVRFK 27
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.2 bits (61), Expect = 4.7
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 699 GTLVAIVGSVGAGKSSLVSALCGEMD 724
+ ++G GKSS++ E++
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINELN 54
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 4.7
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+VG GK+ L+ +
Sbjct: 6 CVVVGDGAVGKTCLLISYT 24
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.9 bits (61), Expect = 4.7
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ ++G+ G GKS L+ +
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDD 29
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 28.1 bits (62), Expect = 4.8
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 647 NILPNLLLT--GVYSSFTDPLVIENGTFTWERNTEGEGAESPPTLQNINMRVREGTLVAI 704
+ +++ +Y V E + + +G + +
Sbjct: 41 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTM 100
Query: 705 VGSVGAGKSSLVSALCGEMDKISGRVNTK 733
G G GKSSL++A+ + V+ K
Sbjct: 101 AGLSGVGKSSLLNAINPGLKLRVSEVSEK 129
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.7 bits (60), Expect = 4.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 701 LVAIVGSVGAGKSSLVSALCGEMD 724
L I G G GKS+ L ++D
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLD 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.7 bits (60), Expect = 5.0
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ ++G GK+ L C
Sbjct: 5 IIVIGDSNVGKTCLTYRFCA 24
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.6 bits (60), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
VA+ G+ G GKSSLV
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKG 25
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.5 bits (60), Expect = 5.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ ++G+ G GK+ LV
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQ 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.7 bits (60), Expect = 5.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ +VG GK++L+
Sbjct: 5 IVVVGDSQCGKTALLHVFA 23
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 5.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+VG GK+ L+ +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTN 28
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.5 bits (60), Expect = 5.5
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ +G G GK++ +
Sbjct: 8 LLALGDSGVGKTTFLYRYTD 27
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.6 bits (60), Expect = 5.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
++G+ G GKS L+
Sbjct: 8 FLVIGNAGTGKSCLLHQFIE 27
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 5.7
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 700 TLVAIVGSVGAGKSSLVSALCGEMD 724
+V VG GAGKS+ +
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAG 39
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.2 bits (59), Expect = 5.8
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ +G GK+SL++ +
Sbjct: 3 LVFLGEQSVGKTSLITRFMYD 23
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.3 bits (59), Expect = 5.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
V ++G G GKSS++
Sbjct: 7 VCLLGDTGVGKSSIMWRFV 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.2 bits (59), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
V ++GS G GKS+L
Sbjct: 6 VVVLGSGGVGKSALTVQFVT 25
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.4 bits (60), Expect = 6.1
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 702 VAIVGSVGAGKSSLVSALCGE 722
+ ++G G GKS L+ +
Sbjct: 5 ILLIGDSGVGKSCLLVRFVED 25
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 6.1
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSAL 719
G V + G G GKS L
Sbjct: 12 EVFGVGVLLTGRSGIGKSECALDL 35
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 27.5 bits (60), Expect = 6.2
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 701 LVAIVGSVGAGKSSLVSALCG------EMDKISGRVNTKGSIAFVPQQAWIQNATLRDNI 754
+VA+ G +G+GKS++ +A + D I+ +V G+ A + +
Sbjct: 5 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADG 64
Query: 755 VFGKTHVPRRYNKVIDA 771
+ + R +
Sbjct: 65 TLQRRALRERIFANPEE 81
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.3 bits (59), Expect = 6.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ +VG+ G GKS+L L
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ 25
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.3 bits (59), Expect = 6.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ ++G GKSS+V
Sbjct: 6 LVLLGEAAVGKSSIVLRFVS 25
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 28.0 bits (61), Expect = 6.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
+ +VG GKS+ SA
Sbjct: 3 IGVVGKPNVGKSTFFSAATL 22
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 6.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ +VG G GKS+L
Sbjct: 8 LVVVGGGGVGKSALTIQFI 26
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 27.3 bits (59), Expect = 6.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 701 LVAIVGSVGAGKSSLVSALCGEMDKI 726
V I G++G+GK++ ++ + I
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDI 36
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.2 bits (59), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
V +VGS G GKS+L
Sbjct: 7 VIMVGSGGVGKSALTLQFM 25
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 6.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ +VG G GK++ V
Sbjct: 6 LVLVGDGGTGKTTFVKRHL 24
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.2 bits (60), Expect = 7.0
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 696 VREGTLVAIVGSVGAGKSSLVSALC 720
G V I G G GKS L
Sbjct: 12 DVYGVGVLITGDSGIGKSETALELI 36
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.2 bits (59), Expect = 7.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
V ++G G GKSSL++
Sbjct: 9 VILLGDGGVGKSSLMNRYV 27
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 7.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ ++G GKSSLV
Sbjct: 9 LVLLGESAVGKSSLVLRFV 27
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 7.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+VG GK+ L+ +
Sbjct: 12 CVVVGDGAVGKTCLLMSYA 30
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 27.6 bits (60), Expect = 7.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 702 VAIVGSVGAGKSSLVSALCGEMDKIS 727
V + G G GKS+ V AL + +I
Sbjct: 31 VLVFGDRGTGKSTAVRALAALLPEIE 56
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
(Pichia pastoris) [TaxId: 4922]}
Length = 460
Score = 27.6 bits (61), Expect = 8.1
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 742 QAWIQNATLRD-NIV----FGKTHVPR 763
A++ + +L +IV G H+P
Sbjct: 356 NAFLDDESLDGEDIVAWVNLGLHHLPN 382
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.9 bits (58), Expect = 8.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 702 VAIVGSVGAGKSSLVSALC 720
+ +VG G GKS+L
Sbjct: 7 LVVVGDGGVGKSALTIQFF 25
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.0 bits (59), Expect = 8.7
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 692 INMRVREGTLVAIVGSVGAGKSSLVSALCGEMDKISGRVNTKGSIAFVPQQAW 744
+ + + +V + G +GAGK++L + + + V +
Sbjct: 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGN--VKSPTYTLVEEYNI 76
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 9.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 702 VAIVGSVGAGKSSLVSALCG 721
V ++G GK+SLV C
Sbjct: 6 VVLLGEGCVGKTSLVLRYCE 25
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 99
Score = 25.9 bits (57), Expect = 9.8
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 605 RAARRLHLMVLTNILHSCMSFFDTTPLGRILSRCGKDVDTVDNILPNLLLTGV 657
ARR ++ NI+ + M + G +L+ + L V
Sbjct: 39 ETARRFNVNN--NIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.411
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,370,074
Number of extensions: 154460
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 147
Length of query: 950
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 856
Effective length of database: 1,116,976
Effective search space: 956131456
Effective search space used: 956131456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.5 bits)