BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16199
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/393 (63%), Positives = 301/393 (76%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS +IT+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXXPILKGTVIVLGAGDTAF 160
IFQGLT++ GFYTSK FLP VA P ++G VIVLGAGDTAF
Sbjct: 288 PKTDDIFQGLTQDQGFYTSKDFLPLVA--KSSKAGMCACHSPLPSIRGAVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
+QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D V EA+ P+K +++ PEV+
Sbjct: 406 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVESVNDGK A+W+IHKYIQ + +V KP LP F
Sbjct: 466 PETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ +DLVDISVE+ GLKF NPFGLASA PTT+SSM+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRIV+GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/268 (66%), Positives = 214/268 (79%), Gaps = 3/268 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YNK+DW+ELS+K E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V+IPFF KLTPN+T+I IA+AA EG ADGV+A NTVSGLM L ADG PWPAV
Sbjct: 695 CRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G K TTYGGVSG A RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSAVQNQDFTV+ DY TGL+ LLYLKS +L+GWDGQSP T HQKGKP + + GK
Sbjct: 815 VCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGK 874
Query: 803 AIPNFGEYKKIRENLITE--LNLKKLNS 828
+PNFG Y + R+ +I E + LK+ N+
Sbjct: 875 KLPNFGPYLEQRKKIIAEEKMRLKEQNA 902
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 90/130 (69%), Gaps = 7/130 (5%)
Query: 438 FLFQAIPNFGEYKKIRENLITE--LNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVI 495
+ + +PNFG Y + R+ +I E + LK+ N+ L+ R+ P + I ++KDVI
Sbjct: 871 LMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLE-----RKPFIPKKPIPAIKDVI 925
Query: 496 GQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDE 555
G+A+Q + + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH VTD
Sbjct: 926 GKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDT 985
Query: 556 CTGCTLCLSI 565
CTGCTLCLS+
Sbjct: 986 CTGCTLCLSV 995
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/393 (63%), Positives = 301/393 (76%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS +IT+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXXPILKGTVIVLGAGDTAF 160
IFQGLT++ GFYTSK FLP VA P ++G VIVLGAGDTAF
Sbjct: 288 PKTDDIFQGLTQDQGFYTSKDFLPLVA--KSSKAGMCACHSPLPSIRGAVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
+QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D V EA+ P+K +++ PEV+
Sbjct: 406 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVESVNDGK A+W+IHKYIQ + +V KP LP F
Sbjct: 466 PETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ +DLVDISVE+ GLKF NPFGLASA PTT+SSM+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRIV+GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/268 (65%), Positives = 213/268 (79%), Gaps = 3/268 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YNK+DW+ELS+K E +GADALELNLS PHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSAPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V+IPFF KLTPN+T+I IA+AA EG ADGV+A NTVSGLM L ADG PWPAV
Sbjct: 695 CRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G K TTYGGVSG A RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSAVQNQDFTV+ DY TGL+ LLYLKS +L+GWDGQSP T HQKGKP + + GK
Sbjct: 815 VCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGK 874
Query: 803 AIPNFGEYKKIRENLITE--LNLKKLNS 828
+PNFG Y + R+ +I E + LK+ N+
Sbjct: 875 KLPNFGPYLEQRKKIIAEEKMRLKEQNA 902
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 90/130 (69%), Gaps = 7/130 (5%)
Query: 438 FLFQAIPNFGEYKKIRENLITE--LNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVI 495
+ + +PNFG Y + R+ +I E + LK+ N+ L+ R+ P + I ++KDVI
Sbjct: 871 LMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLE-----RKPFIPKKPIPAIKDVI 925
Query: 496 GQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDE 555
G+A+Q + + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH VTD
Sbjct: 926 GKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDT 985
Query: 556 CTGCTLCLSI 565
CTGCTLCLS+
Sbjct: 986 CTGCTLCLSV 995
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 16/185 (8%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP---HGMGERGMGLACGQDPEMVRN 622
+IA++ + D +K + A A+ELN+SCP HG G A G DPE+
Sbjct: 101 IIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG------GQAFGTDPEVAAA 154
Query: 623 ISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPA 682
+ ++ K+P +VKL+PN+T+I IAKA ADG++ INT+ G+ P A
Sbjct: 155 LVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILA 214
Query: 683 VGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAV 742
GG+SG A +P+ LK + +A+ + PI+G+GG+ +A L+ AGA AV
Sbjct: 215 ------NITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAV 267
Query: 743 QICSA 747
+ +A
Sbjct: 268 AVGTA 272
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 120/289 (41%), Gaps = 18/289 (6%)
Query: 44 IPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103
IP ++L V V+L+ D GV + RD ++ +LR+ + A+ + G A
Sbjct: 165 IPGFKLEKSVVERRVKLLADAGVIYHPNFEVG-RDASLPELRRK-HVAVLVATGVYKARD 222
Query: 104 IPI----FQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXXPILKGTVIVLGAGDTA 159
I + + + T+ + T V+VLG GDTA
Sbjct: 223 IKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH------VVVLGGGDTA 276
Query: 160 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIA 219
DC +A+R GA V ++R+ N+ EV A EE EF+ +P + D +
Sbjct: 277 MDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAP-EGFTGDTVVT 335
Query: 220 GMQFNRTE---QNEKGEWVED--EEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKY 274
G++ R + G E ++A+ +I A G D +K+ ++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRW 395
Query: 275 GYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQ 323
G V++ T T++ GVF GD + V ++ DG+ AA IH Y +
Sbjct: 396 GTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAK 444
>pdb|2DJL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJX|A Chain A, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
pdb|2DJX|B Chain B, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
Length = 314
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
LELNLSCP+ G+ + D E +R V + +PF VK+ P +I + A
Sbjct: 126 LELNLSCPNVPGKPQVA----YDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAA 181
Query: 652 AAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
E V+ +N+V + + A+ +V K +GG+ G P L V++
Sbjct: 182 VLNEFPLVKFVTCVNSVGNGLVIDAESE---SVVIKPKQGFGGLGGKYILPTALANVNAF 238
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD---FTVVDD 758
+ P+ + G GG+ S + A I AGA VQ+ +A+Q + FT ++D
Sbjct: 239 YRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLED 289
>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
Length = 314
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
LELNLSCP+ G+ + D E +R V + +PF VK+ P +I + A
Sbjct: 126 LELNLSCPNVPGKPQVA----YDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAA 181
Query: 652 AAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
E V+ +N+V + + A+ +V K +GG+ G P L V++
Sbjct: 182 VLNEFPLVKFVTCVNSVGNGLVIDAESE---SVVIKPKQGFGGLGGKYILPTALANVNAF 238
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD---FTVVDD 758
+ P+ + G GG+ S + A I AGA VQ+ +A+Q + FT ++D
Sbjct: 239 YRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLED 289
>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
Length = 312
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
LELNLSCP+ G+ + D E +R V + +PF VK+ P +I + A
Sbjct: 124 LELNLSCPNVPGKPQVA----YDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAA 179
Query: 652 AAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
E V+ +N+V + + A+ +V K +GG+ G P L V++
Sbjct: 180 VLNEFPLVKFVTCVNSVGNGLVIDAESE---SVVIKPKQGFGGLGGKYILPTALANVNAF 236
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD---FTVVDD 758
+ P+ + G GG+ S + A I AGA VQ+ +A+Q + FT ++D
Sbjct: 237 YRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLED 287
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 576 KDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMV----RNISLWVRSSV 631
KDD+L +K A A + +N+S P+ G R + D + + L
Sbjct: 152 KDDYLICXEKI-YAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHK 210
Query: 632 KIPFFVKLTPNITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689
+P VK+ P+++ + +A + DGV A NT + G K
Sbjct: 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQ---------GXKNCD 261
Query: 690 TYGGVSGNATRPMGLKAVSSIAKMF----PNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
GG+SG RP+ LK+ I ++ PI+G+GGIDS A + I AGA VQI
Sbjct: 262 QTGGLSG---RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318
Query: 746 SA 747
S
Sbjct: 319 SG 320
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641
L K E + ELNLSCP+ GE + D E + V + P VKL P
Sbjct: 112 LKKIQESDFSGITELNLSCPNVPGEPQLAY----DFEATEKLLKEVFTFFTKPLGVKLPP 167
Query: 642 --NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
++ + +A+ + V+++N++ + + + +V K +GG+ G
Sbjct: 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE---SVVIKPKDGFGGIGGAYI 224
Query: 700 RPMGLKAVSSI-AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDD 758
+P L V + ++ P I+G GGI++ A + + GA +QI +A+ + + D
Sbjct: 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDR 284
Query: 759 YITGLQTLLYLKSTQ 773
I L+ ++ K Q
Sbjct: 285 IIKELEEIMNQKGYQ 299
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 571 MCTYNKDDWLELSKK---TEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV 627
M + ++ +E+ KK K LELNLSCP+ G+ G D + R V
Sbjct: 103 MSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGKP----QVGYDFDTTRTYLQKV 158
Query: 628 RSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPW---PA-- 682
+ +PF VK+ P DIA ++ A ++ V + +++ GN PA
Sbjct: 159 SEAYGLPFGVKMPPYF----DIAH--FDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANE 212
Query: 683 -VGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHA 741
V K +GG+ G P L V++ + P+ + G GG+ S + A I AGA
Sbjct: 213 TVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASM 272
Query: 742 VQICSAVQNQ 751
VQ+ +A+ ++
Sbjct: 273 VQVGTALHDE 282
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641
L K E + ELNLSCP+ G+ + D E + V + P VKL P
Sbjct: 112 LKKIQESDFSGITELNLSCPNVPGKPQLAY----DFEATEKLLKEVFTFFTKPLGVKLPP 167
Query: 642 --NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
++ + +A+ + V+++N++ + + + +V K +GG+ G
Sbjct: 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE---SVVIKPKDGFGGIGGAYI 224
Query: 700 RPMGLKAVSSI-AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDD 758
+P L V + ++ P I+G GGI++ A + + GA +QI +A+ + + D
Sbjct: 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDR 284
Query: 759 YITGLQTLLYLKSTQ 773
I L+ ++ K Q
Sbjct: 285 IIKELEEIMNQKGYQ 299
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641
L K E + ELNLSCP+ G+ + D E + V + P VKL P
Sbjct: 112 LKKIQESDFSGITELNLSCPNVPGKPQLAY----DFEATEKLLKEVFTFFTKPLGVKLPP 167
Query: 642 --NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
++ + +A+ + V+++N++ + + + +V K +GG+ G
Sbjct: 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE---SVVIKPEDGFGGIGGAYI 224
Query: 700 RPMGLKAVSSI-AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDD 758
+P L V + ++ P I+G GGI++ A + + GA +QI +A+ + + D
Sbjct: 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDR 284
Query: 759 YITGLQTLLYLKSTQ 773
I L+ ++ K Q
Sbjct: 285 IIKELEEIMNQKGYQ 299
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641
L K E + ELNLSCP+ G+ + D E + V + P VKL P
Sbjct: 112 LKKIQESDFSGITELNLSCPNVPGKPQLAY----DFEATEKLLKEVFTFFTKPLGVKLPP 167
Query: 642 --NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
++ + +A+ + V+++N++ + + + +V K +GG+ G
Sbjct: 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE---SVVIKPKDGFGGIGGAYI 224
Query: 700 RPMGLKAVSSI-AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDD 758
+P L V + ++ P I+G GGI++ A + + GA +QI +A+ + + D
Sbjct: 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDR 284
Query: 759 YITGLQTLLYLKSTQ 773
I L+ ++ K Q
Sbjct: 285 IIKELEEIMNQKGYQ 299
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R++ V + + K VK+ P++
Sbjct: 182 ADYLVVNVSSPNTAGLRSL-----QGKTELRHLLSKVLQERDALKGTRKPAVLVKIAPDL 236
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA A E DG+ NT P G + T GG+SG R
Sbjct: 237 TAQDKEDIASVARELGIDGLIVTNTTVS--------RPVGLQGALRSET-GGLSGKPLRD 287
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ IQAGA VQ+ +A+
Sbjct: 288 L---STQTIREMYALTQGRIPIIGVGGVSSGQDALEKIQAGASLVQLYTAL 335
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641
L K E + ELNLSCP+ G+ + D E + V + P VKL P
Sbjct: 112 LKKIQESDFSGITELNLSCPNVPGKPQLAY----DFEATEKLLKEVFTFFTKPLGVKLPP 167
Query: 642 --NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
++ + +A+ + V+++N++ + + + +V K +GG+ G
Sbjct: 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE---SVVIKPKDGFGGIGGAYI 224
Query: 700 RPMGLKAVSSI-AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDD 758
+P L V + ++ P I+G GGI++ A + + GA +QI +A+ + + D
Sbjct: 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDR 284
Query: 759 YITGLQTLLYLKSTQ 773
I L+ ++ K Q
Sbjct: 285 IIKELEEIMNQKGYQ 299
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641
L K E + ELNLSCP+ G+ + D E + V + P VKL P
Sbjct: 112 LKKIQESDFSGITELNLSCPNVPGKPQLAY----DFEATEKLLKEVFTFFTKPLGVKLPP 167
Query: 642 --NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
++ + +A+ + V+++N++ + + + +V K +GG+ G
Sbjct: 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE---SVVIKPKDGFGGIGGAYI 224
Query: 700 RPMGLKAVSSI-AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDD 758
+P L V + ++ P I+G GGI++ A + + GA +QI +A+ + + D
Sbjct: 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDR 284
Query: 759 YITGLQTLLYLKSTQ 773
I L+ ++ K Q
Sbjct: 285 IIKELEEIMNQKGYQ 299
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R + V R + VK+ P++
Sbjct: 203 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 257
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA E DG+ NT P G + T GG+SG R
Sbjct: 258 TSQDKEDIASVVKELGIDGLIVTNTTVS--------RPAGLQGALRSET-GGLSGKPLRD 308
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A+
Sbjct: 309 L---STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 356
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R + V R + VK+ P++
Sbjct: 200 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 254
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA E DG+ NT P G + T GG+SG R
Sbjct: 255 TSQDKEDIASVVKELGIDGLIVTNTTVS--------RPAGLQGALRSET-GGLSGKPLRD 305
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A+
Sbjct: 306 L---STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 353
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R + V R + VK+ P++
Sbjct: 175 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 229
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA E DG+ NT P G + T GG+SG R
Sbjct: 230 TSQDKEDIASVVKELGIDGLIVTNTTVS--------RPAGLQGALRSET-GGLSGKPLRD 280
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A+
Sbjct: 281 L---STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 328
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R + V R + VK+ P++
Sbjct: 177 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 231
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA E DG+ NT P G + T GG+SG R
Sbjct: 232 TSQDKEDIASVVKELGIDGLIVTNTTVS--------RPAGLQGALRSET-GGLSGKPLRD 282
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A+
Sbjct: 283 L---STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 330
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R + V R + VK+ P++
Sbjct: 205 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 259
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA E DG+ NT P G + T GG+SG R
Sbjct: 260 TSQDKEDIASVVKELGIDGLIVTNTTVS--------RPAGLQGALRSET-GGLSGKPLRD 310
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A+
Sbjct: 311 L---STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 358
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
LELNLSCP+ G+ D + +R V F VK+ P + + A+
Sbjct: 159 LELNLSCPNVPGKP----QVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAE 214
Query: 652 AAYE-GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
E K ++ IN++ + + A+ +V K +GG+ G P L +++
Sbjct: 215 ILNEFPKVQFITCINSIGNGLVIDAE---TESVVIKPKQGFGGLGGRYVLPTALANINAF 271
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLK 770
+ P I G GG+ + + A + AGA VQ+ +A+Q + ++ + + L ++ K
Sbjct: 272 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331
Query: 771 STQ 773
Q
Sbjct: 332 RYQ 334
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
LELNLSCP+ G+ + D + +R V F VK+ P + + A+
Sbjct: 159 LELNLSCPNVPGKPQVAY----DFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAE 214
Query: 652 AAYE-GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
E K ++ IN++ + + A+ +V K +GG+ G P L +++
Sbjct: 215 ILNEFPKVQFITCINSIGNGLVIDAE---TESVVIKPKQGFGGLGGRYVLPTALANINAF 271
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLK 770
+ P I G GG+ + + A + AGA VQ+ +A+Q + ++ + + L ++ K
Sbjct: 272 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331
Query: 771 STQ 773
Q
Sbjct: 332 RYQ 334
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-------RSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q +R + V R + VK+ P++
Sbjct: 205 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 259
Query: 644 T--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T + DIA E DG+ NT P G + T GG+SG R
Sbjct: 260 TSQDKEDIASVVKELGIDGLIVTNTTVS--------RPAGLQGALRSET-GGLSGKPLRD 310
Query: 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A+
Sbjct: 311 L---STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 358
>pdb|3C61|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
Length = 314
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 10/183 (5%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
LELNLSCP+ G+ + D + +R V F VK+ P + + A+
Sbjct: 126 LELNLSCPNVPGKPQVAY----DFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAE 181
Query: 652 AAYE-GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
E + ++ IN++ + + A+ +V K +GG+ G P L V++
Sbjct: 182 ILNEFPQVQFITCINSIGNGLVIDAETE---SVVIKPKQGFGGLGGRYVLPTALANVNAF 238
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLK 770
+ P I G GG+ + + A + AGA VQ+ +A+ + + + L ++ K
Sbjct: 239 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALHEEGPAIFERLTAELLDVMAKK 298
Query: 771 STQ 773
Q
Sbjct: 299 GYQ 301
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAA 653
LELNLSCP+ G+ D + +R V F VK+ P A A
Sbjct: 159 LELNLSCPNVPGKP----QVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFAFAHFDAAAE 214
Query: 654 YEG---KADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
K ++ IN++ + + A+ +V K +GG+ G P L +++
Sbjct: 215 ILNEFPKVQFITCINSIGNGLVIDAE---TESVVIKPKQGFGGLGGRYVLPTALANINAF 271
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLK 770
+ P I G GG+ + + A + AGA VQ+ +A+Q + ++ + + L ++ K
Sbjct: 272 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331
Query: 771 STQ 773
Q
Sbjct: 332 RYQ 334
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAA 653
LELNLSCP+ G+ D + +R V F VK+ P A A
Sbjct: 159 LELNLSCPNVPGKP----QVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAE 214
Query: 654 YEG---KADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
K ++ IN++ + + A+ +V K +GG+ G P L +++
Sbjct: 215 ILNEFPKVQFITCINSIGNGLVIDAE---TESVVIKPKQGFGGLGGRYVLPTALANINAF 271
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLK 770
+ P I G GG+ + + A + AGA VQ+ +A+Q + ++ + + L ++ K
Sbjct: 272 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331
Query: 771 STQ 773
Q
Sbjct: 332 RYQ 334
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 594 LELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--NITNITDIAK 651
+ELNLSCP+ G + D E I V + P +KL P +I + A
Sbjct: 159 VELNLSCPNVPGXPQIAY----DFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAA 214
Query: 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIA 711
V+ IN++ + + + V +GG+ G+ +P L V +
Sbjct: 215 IFNXYPLTFVNCINSIGNGLVIEDE-----TVVIXPKNGFGGIGGDYVKPTALANVHAFY 269
Query: 712 KMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751
K P+ I+G GG+ + A + I GA VQI +A+ +
Sbjct: 270 KRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQE 310
>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 443
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 625 LWVRSSVKIPF-FVKLTPNITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWP 681
LW ++ K P FVKL P++ +IA E DG+ NT + + N
Sbjct: 289 LWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI-------NDIK 341
Query: 682 AVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAH 740
+ KK GGVSG + + K + + PI+ GGI S AL+ I+AGA
Sbjct: 342 SFENKK----GGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGAS 397
Query: 741 AVQICSAV 748
Q+ S +
Sbjct: 398 VCQLYSCL 405
>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Inhibitor Dsm267
Length = 400
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 625 LWVRSSVKIPF-FVKLTPNITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWP 681
LW ++ K P FVKL P++ +IA E DG+ NT + + N
Sbjct: 246 LWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI-------NDIK 298
Query: 682 AVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAH 740
+ KK GGVSG + + K + + PI+ GGI S AL+ I+AGA
Sbjct: 299 SFENKK----GGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGAS 354
Query: 741 AVQICSAV 748
Q+ S +
Sbjct: 355 VCQLYSCL 362
>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm1
pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm2
pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm74
pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Novel Inhibitor Genz667348
Length = 415
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 625 LWVRSSVKIPF-FVKLTPNITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWP 681
LW ++ K P FVKL P++ +IA E DG+ NT + + N
Sbjct: 261 LWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI-------NDIK 313
Query: 682 AVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAH 740
+ KK GGVSG + + K + + PI+ GGI S AL+ I+AGA
Sbjct: 314 SFENKK----GGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGAS 369
Query: 741 AVQICSAV 748
Q+ S +
Sbjct: 370 VCQLYSCL 377
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSP 208
+ V+G GD+A + AT R A V +V R+ RA + A +K FL +
Sbjct: 158 IAVIGGGDSAMEEATFLTRF-ARSVTLVHRR--DEFRASKIMLDRARNNDKIRFLTNHTV 214
Query: 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKP 268
V VD D + G++ T + L + A G V EAI
Sbjct: 215 VAVD-GDTTVTGLRVRDTNTGAE----------TTLPVTGVFVAIGHEPRSGLVREAID- 262
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQEK 325
+D GY V T +TS+PGVF GD + + V + G AA +++ E
Sbjct: 263 --VDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEH 318
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 209
+ V+G GD+A + T + A+KV +V R+ + + ++ +K +F+ +
Sbjct: 148 LFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDELRAQRILQDRAFK-NDKIDFIWSHTLK 205
Query: 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPV 269
++ KD K+ + T+ + E E + I + + + F + NDV
Sbjct: 206 SINEKDGKVGSVTLTSTKDGSE-ETHEADGVFIYIGXKPLTAPFKDLGITNDV------- 257
Query: 270 KLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQEKNN 327
GY V TSVPG+F GD + V + DG AA +YI+ N+
Sbjct: 258 -----GYI-VTKDDXTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLND 310
>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase K159a
Length = 235
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GVSA +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 128 GVSA-HTMSEVKQAEEDGADYVGLGP----IYPTETAKDTRAVQGVSLIEAVRRQGISIP 182
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 183 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 215
>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GVSA +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 120 GVSA-HTMSEVKQAEEDGADYVGLGP----IYPTETKKDTRAVQGVSLIEAVRRQGISIP 174
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 175 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 207
>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0P|B Chain B, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0U|X Chain X, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
pdb|3B0U|Y Chain Y, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
Length = 350
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 95/282 (33%), Gaps = 75/282 (26%)
Query: 541 ITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSC 600
+ F PE H IA + + E ++ E G D + LNL C
Sbjct: 51 LAFRPEEHP-----------------IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGC 93
Query: 601 PHGMGERGMGLAC-GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKAD 659
P + G AC D VR I + +V++P VK+ + K Y G A
Sbjct: 94 PSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEG-----KETYRGLAQ 148
Query: 660 GVSA----------INTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSS 709
V A ++ S L++LS N P+ V
Sbjct: 149 SVEAMAEAGVKVFVVHARSALLALSTKAN------------------REIPPLRHDWVHR 190
Query: 710 IAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV--VDDYITGL---- 763
+ FP + GGI S + AL F V + AV F + D + GL
Sbjct: 191 LKGDFPQLTFVTNGGIRSLEEAL-FHLKRVDGVMLGRAVYEDPFVLEEADRRVFGLPRRP 249
Query: 764 -------QTLLYLKSTQLKGWDGQSPPTPVHQ------KGKP 792
+ YL+ LKG +PP V + +G+P
Sbjct: 250 SRLEVARRMRAYLEEEVLKG----TPPWAVLRHMLNLFRGRP 287
>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase Complexed With A Carboxylated Thiazole
Phosphate
Length = 235
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GVSA +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 128 GVSA-HTMSEVKQAEEDGADYVGLGP----IYPTETKKDTRAVQGVSLIEAVRRQGISIP 182
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 183 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 215
>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
pdb|1G69|B Chain B, Thiamin Phosphate Synthase
Length = 228
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GV+A +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 121 GVAA-HTMSEVKQAEEDGADYVGLGP----IYPTETKKDTRAVQGVSLIEAVRRQGISIP 175
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 176 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 208
>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GV+A +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 120 GVAA-HTMSEVKQAEEDGADYVGLGP----IYPTETKKDTRAVQGVSLIEAVRRQGISIP 174
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 175 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 207
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GV+A +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 118 GVAA-HTMSEVKQAEEDGADYVGLGP----IYPTETKKDTRAVQGVSLIEAVRRQGISIP 172
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 173 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 205
>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 660 GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM-GLKAVSSIAKMFPNFP 718
GV+A +T+S + DG + +G Y + TR + G+ + ++ + + P
Sbjct: 119 GVAA-HTMSEVKQAEEDGADYVGLGP----IYPTETKKDTRAVQGVSLIEAVRRQGISIP 173
Query: 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I+GIGGI + D A IQAGA V + SA+ +
Sbjct: 174 IVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 206
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 144 PILKGTVI-VLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCE 201
P+ K V+ V+G GD+A + A L + KV ++ R+ +A P V+ ++ E
Sbjct: 150 PLFKNRVVAVIGGGDSALEGA-EILSSYSTKVYLIHRR--DTFKAQPIYVETVKKKPNVE 206
Query: 202 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD-- 259
F+ ++ V ++K +K+ E + GE E L N + G D
Sbjct: 207 FV--LNSVVKEIKGDKVVKQVV--VENLKTGEIKE-------LNVNGVFIEIG---FDPP 252
Query: 260 NDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD--TANLS-DTTVESVNDGKTAAW 316
D ++ ++ D GY +V+ M TSVPGVF GD +A L + +V G AA
Sbjct: 253 TDFAKS-NGIETDTNGYIKVD-EWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAAT 310
Query: 317 HIHKYIQEKNN 327
++Y+ EK
Sbjct: 311 SAYRYVTEKKG 321
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 32/156 (20%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 209
V+++G GD+A D A + L L+ R A +E+ A EE L ++P
Sbjct: 155 VLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELXKAHEEGR--LEVLTP- 211
Query: 210 QVDVKDNKIAGMQFNRTEQNEKGEWV------EDEEQRIKLKANYIISAFGSTL--LDND 261
+ R E +E+ W EE +++ A I++ + + L L N
Sbjct: 212 -----------YELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANW 260
Query: 262 VLEAIK-PVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
L K +K+D TT ATS+PGV+ GD
Sbjct: 261 GLALEKNKIKVD---------TTXATSIPGVYACGD 287
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 144 PILKGTVI-VLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCE 201
P+ K V+ V+G GD+A + A L + KV ++ R+ +A P V+ ++ E
Sbjct: 150 PLFKNRVVAVIGGGDSALEGA-EILSSYSTKVYLIHRR--DTFKAQPIYVETVKKKPNVE 206
Query: 202 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD-- 259
F+ ++ V ++K +K+ E + GE E L N + G D
Sbjct: 207 FV--LNSVVKEIKGDKVVKQVV--VENLKTGEIKE-------LNVNGVFIEIG---FDPP 252
Query: 260 NDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD--TANLS-DTTVESVNDGKTAAW 316
D ++ ++ D GY +V+ M TSVPGVF GD +A L + +V G AA
Sbjct: 253 TDFAKS-NGIETDTNGYIKVD-EWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAAT 310
Query: 317 HIHKYIQEKNN 327
++Y+ EK
Sbjct: 311 SAYRYVTEKKG 321
>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
pdb|3B0V|D Chain D, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
Length = 363
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 88/270 (32%), Gaps = 69/270 (25%)
Query: 541 ITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSC 600
+ F PE H IA + + E ++ E G D + LNL C
Sbjct: 72 LAFRPEEHP-----------------IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGC 114
Query: 601 PHGMGERGMGLAC-GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKAD 659
P + G AC D VR I +V++P VK + K Y G A
Sbjct: 115 PSEKAQEGGYGACLLLDLARVREILKAXGEAVRVPVTVKXRLGLEG-----KETYRGLAQ 169
Query: 660 GVSA----------INTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSS 709
V A ++ S L++LS N P+ V
Sbjct: 170 SVEAXAEAGVKVFVVHARSALLALSTKAN------------------REIPPLRHDWVHR 211
Query: 710 IAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV--VDDYITGL---- 763
+ FP + GGI S + AL F V + AV F + D + GL
Sbjct: 212 LKGDFPQLTFVTNGGIRSLEEAL-FHLKRVDGVXLGRAVYEDPFVLEEADRRVFGLPRRP 270
Query: 764 -------QTLLYLKSTQLKGWDGQSPPTPV 786
+ YL+ LKG +PP V
Sbjct: 271 SRLEVARRXRAYLEEEVLKG----TPPWAV 296
>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|B Chain B, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|C Chain C, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|D Chain D, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h
Length = 492
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKY 321
++LDK P + T+ TSV +F GD N E+ +DGK A + Y
Sbjct: 286 IELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAY 338
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 144 PILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 202
PI + + V+G GD+A + A + G+ KV ++ R+ + ++ L+ K +
Sbjct: 155 PIFRNKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDAFRASKIMQQRALS-NPKIDV 212
Query: 203 LPFMSPVQV--DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG----ST 256
+ S V+ D + + + G++ + V D LK + + A G +
Sbjct: 213 IWNSSVVEAYGDGERDVLGGLKVKNVVTGD----VSD------LKVSGLFFAIGHEPATK 262
Query: 257 LLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAA 315
LD V +LD GY T TSVPGVF GD + + + G AA
Sbjct: 263 FLDGGV-------ELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAA 315
Query: 316 WHIHKYIQE 324
Y+QE
Sbjct: 316 LDAEHYLQE 324
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAA 315
VK+D+ G+ VN M TSVPGV+ GD A +++ +G AA
Sbjct: 283 VKVDERGFIRVN-ARMETSVPGVYAIGDAARPPLLAHKAMREGLIAA 328
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVE 306
+ +I A G + D+L A V LD+ G+ V+ ATSVPGV+ GD + +
Sbjct: 270 DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD-DYCATSVPGVYAIGDVVRGAMLAHK 328
Query: 307 SVNDGKTAAWHIHKYIQEKNNLTVP 331
+ +G A I + + N +P
Sbjct: 329 ASEEGVVVAERIAGHKAQMNYDLIP 353
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 515 VALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSIL 566
+A I++ +CI CG C C Q I P +AHVT + + L L
Sbjct: 47 IAFISEILCIGCGICVKKCPFDAIQIINL-PTNLEAHVTHRYSANSFKLHRL 97
>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 385
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 486 ETILSVKDVIGQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMAC 533
E L+V AV+ +T E++ +K IN+D C+ CG CY C
Sbjct: 222 EIPLAVAACPTAAVKPIT--AEVNGQKVKSVAINNDRCMYCGNCYTMC 267
>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 386
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 486 ETILSVKDVIGQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMAC 533
E L+V AV+ +T E++ +K IN+D C+ CG CY C
Sbjct: 223 EIPLAVAACPTAAVKPIT--AEVNGQKVKSVAINNDRCMYCGNCYTMC 268
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVES-VNDGKTAAWHIH 319
VKLD+ GY V+ + TSVPGV+ GD + + + S V DG AA ++
Sbjct: 262 VKLDERGYIVVD-SRQRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLY 312
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 144 PILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 202
PI + + V+G GD+A + A + G +KV ++ RK + ++ + EK E
Sbjct: 169 PIFRNKPLAVIGGGDSACEEAQFLTKYG-SKVFMLVRKDHLRASTIMQK-RAEKNEKIEI 226
Query: 203 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV 262
L ++ + ++ T++NE+ + L + + A G T V
Sbjct: 227 LYNTVALEAKGDGKLLNALRIKNTKKNEETD----------LPVSGLFYAIGHTPATKIV 276
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKY 321
V D+ GY + + TSVPG F GD + + S G AA KY
Sbjct: 277 ---AGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKY 333
Query: 322 I 322
+
Sbjct: 334 L 334
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVE 306
+ +I A G + D+L A V LD+ G+ V+ TSVPGVF GD + +
Sbjct: 270 DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD-DHCKTSVPGVFAIGDVVRGAMLAHK 328
Query: 307 SVNDGKTAAWHIHKYIQEKNNLTVP 331
+ +G A I + + N +P
Sbjct: 329 ASEEGVMVAERIAGHKAQMNYDLIP 353
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 144 PILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 202
PI + + V+G GD+A + A + G +KV ++ RK + ++ + EK E
Sbjct: 157 PIFRNKPLAVIGGGDSACEEAQFLTKYG-SKVFMLVRKDHLRASTIMQK-RAEKNEKIEI 214
Query: 203 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV 262
L ++ + ++ T++NE+ + L + + A G T V
Sbjct: 215 LYNTVALEAKGDGKLLNALRIKNTKKNEETD----------LPVSGLFYAIGHTPATKIV 264
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKY 321
V D+ GY + + TSVPG F GD + + S G AA KY
Sbjct: 265 ---AGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKY 321
Query: 322 I 322
+
Sbjct: 322 L 322
>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|B Chain B, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|C Chain C, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|D Chain D, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|E Chain E, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|F Chain F, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|2ZQQ|A Chain A, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|B Chain B, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|C Chain C, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|D Chain D, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|E Chain E, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|F Chain F, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQR|A Chain A, Crystal Structure Of Auh Without Rna
pdb|2ZQR|B Chain B, Crystal Structure Of Auh Without Rna
pdb|2ZQR|C Chain C, Crystal Structure Of Auh Without Rna
pdb|2ZQR|D Chain D, Crystal Structure Of Auh Without Rna
pdb|2ZQR|E Chain E, Crystal Structure Of Auh Without Rna
pdb|2ZQR|F Chain F, Crystal Structure Of Auh Without Rna
Length = 272
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 225 RTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLE----AIKPVKLDKYGYPEVN 280
+TE + +E+E + I + I A+G L ++++ A+ +K DK +V
Sbjct: 5 KTEDELRVRHLEEENRGIVVLG--INRAYGKNSLSKNLIKMLSKAVDALKSDK----KVR 58
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVP 331
+ + VPG+FC G A+L + S ++ I I + NL VP
Sbjct: 59 TIIIRSEVPGIFCAG--ADLKERAKMSSSEVGPFVSKIRAVINDIANLPVP 107
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 27/105 (25%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLV----------VFRKGCTNIRAVPEEVQLAWEEK 199
V+V+GAG F+ + +A + GAN +LV + G N ++ E+K
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDK 183
Query: 200 CEFLPFMSPVQVDVKDNKIAGMQFNR-------TEQNEKG-EWVE 236
E+ ++D G Q N EQ+ G +W+E
Sbjct: 184 VEWF---------IEDAMKGGRQQNDIKLVTILAEQSADGVQWLE 219
>pdb|2WSC|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSE|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSF|C Chain C, Improved Model Of Plant Photosystem I
pdb|3LW5|C Chain C, Improved Model Of Plant Photosystem I
Length = 81
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 521 DMCINCGKCYMACNDSGYQAITF----HPETHQAHVTDECTGCTLCLS 564
D CI C +C AC + I + + A T++C GC C S
Sbjct: 9 DTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCES 56
>pdb|2O01|C Chain C, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 80
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 521 DMCINCGKCYMACNDSGYQAITF----HPETHQAHVTDECTGCTLCLS 564
D CI C +C AC + I + + A T++C GC C S
Sbjct: 8 DTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCES 55
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHV 552
I+ D+CI+CG C C S F PE ++++
Sbjct: 34 IDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYI 68
>pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
Structures
Length = 77
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHV 552
I+ D+CI+CG C C S F PE ++++
Sbjct: 34 IDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYI 68
>pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
Average Structure
Length = 77
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHV 552
I+ D+CI+CG C C S F PE ++++
Sbjct: 34 IDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYI 68
>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
Length = 195
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 512 KQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
K + L++ CI CG C AC Y A HP A +CT C
Sbjct: 79 KDGLVLVDPKKCIACGACIAACP---YDARYLHP----AGYVSKCTFC 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,623,585
Number of Sequences: 62578
Number of extensions: 1036456
Number of successful extensions: 2936
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2828
Number of HSP's gapped (non-prelim): 114
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)