BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16199
(842 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CHR6|DPYD_MOUSE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Mus musculus GN=Dpyd
PE=2 SV=1
Length = 1025
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/393 (65%), Positives = 312/393 (79%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLST ++T+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSTDEMTLSSLKENGYRAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
IFQGLT+ GFYTSK FLP VA SSK G+C C LP ++G VIVLGAGDTAF
Sbjct: 288 PKKDHIFQGLTQVQGFYTSKDFLPLVAKSSKTGMCA-CH-SPLPSIRGAVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFLPF+SP +V VKD KI
Sbjct: 346 DCATSALRCGALRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKDGKIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
MQF RTEQ+E G WVEDEEQ ++LKA+ +ISAFGS L D V EA+ P+K +++G PEVN
Sbjct: 406 MQFVRTEQDETGNWVEDEEQTVRLKADVVISAFGSVLEDPKVKEALSPIKFNRWGLPEVN 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVESVNDGK A+W+IHK+IQ + +VP +P +P F
Sbjct: 466 PETMQTSEPWVFAGGDVVGMANTTVESVNDGKQASWYIHKHIQAQYGTSVPSQPTMPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ +DLVDISVE+ GL+FPNPFGLASA P T++ M+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPVDLVDISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRI++GTTS LYGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIIRGTTSGPLYGPGQSSFLNIELISEKTA 618
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 207/263 (78%), Gaps = 1/263 (0%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+ILIASIMC+YNK DW+ELSK E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NILIASIMCSYNKSDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V++PFF KLTPN+T+I IA+AA EG ADGV+A NTVSGLM L ADG PWPAV
Sbjct: 695 CRWVRQAVRVPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G + TTYGGVSG A RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GIGRRTTYGGVSGTAIRPIALRAVTAIARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSA+QNQDFTV++DY TGL+ LLYLKS +L WDGQSPP HQKGKP + + G+
Sbjct: 815 VCSAIQNQDFTVIEDYCTGLKALLYLKSIEELADWDGQSPPIISHQKGKPVPRVAELMGQ 874
Query: 803 AIPNFGEYKKIRENLITELNLKK 825
+P+FG Y + R+ +I +++
Sbjct: 875 KLPSFGPYLEQRKKIIAASKIRQ 897
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 88/128 (68%), Gaps = 3/128 (2%)
Query: 438 FLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQ 497
+ Q +P+FG Y + R+ +I +++ D + + L ++ N+ + I ++KDVIG+
Sbjct: 871 LMGQKLPSFGPYLEQRKKIIAASKIRQ--KDQNTACSPLQRKHFNSQ-KPIPAIKDVIGK 927
Query: 498 AVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECT 557
++Q + + E+ +QVVALI+++MCINCGKCYM CNDSGYQAI F PETH V+D CT
Sbjct: 928 SLQYLGTFGEMSIMEQVVALIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVSDTCT 987
Query: 558 GCTLCLSI 565
GCTLCLS+
Sbjct: 988 GCTLCLSV 995
>sp|O89000|DPYD_RAT Dihydropyrimidine dehydrogenase [NADP(+)] OS=Rattus norvegicus
GN=Dpyd PE=2 SV=1
Length = 1025
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/393 (65%), Positives = 311/393 (79%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +S+ST ++T+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSISTDEMTLSTLKENGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
IFQGLT+ GFYTSK FLP VA SK G+C C LP ++G VIVLGAGDTAF
Sbjct: 288 PKKDHIFQGLTQVQGFYTSKDFLPLVAKGSKPGMCA-CH-SPLPSVRGAVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFLPF+SP +V VKD KI G
Sbjct: 346 DCATSALRCGARRVFIVFRKGFANIRAVPEEMELAKEEKCEFLPFLSPRKVIVKDGKIVG 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
MQF RTEQ+E G WVEDEEQ ++LKA+ +IS FGS L D V+EA+ P+K +++G PEVN
Sbjct: 406 MQFVRTEQDETGNWVEDEEQIVRLKADVVISPFGSVLDDPKVIEALSPIKFNRWGLPEVN 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVESVNDGK A+W+IH+YIQ + VP +P LP F
Sbjct: 466 PETMQTSEPWVFAGGDVVGMANTTVESVNDGKQASWYIHEYIQAQYGALVPSQPTLPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ +DLVDISVE+ GL+FPNPFGLASA P T++ M+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPVDLVDISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRI++GTTS LYGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIIRGTTSGPLYGPGQSSFLNIELISEKTA 618
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 209/263 (79%), Gaps = 1/263 (0%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+ILIASIMC+YNK+DW+ELSK E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NILIASIMCSYNKNDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR SV++PFF KLTPN+T+I IA+AA EG ADGV+A NTVSGLM L ADG+PWP+V
Sbjct: 695 CRWVRQSVRVPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGSPWPSV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G+ K TTYGGVSG RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GSGKRTTYGGVSGTTIRPIALRAVTAIARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSA+QNQDFTV++DY TGL+ LLYLKS +L WDGQSPPT HQKGKP + G+
Sbjct: 815 VCSAIQNQDFTVIEDYCTGLKALLYLKSIEELSDWDGQSPPTMSHQKGKPVPHIAELMGQ 874
Query: 803 AIPNFGEYKKIRENLITELNLKK 825
+P+FG Y + R+ ++ +++
Sbjct: 875 KLPSFGPYLERRKKILAASKIRE 897
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 89/128 (69%), Gaps = 3/128 (2%)
Query: 438 FLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQ 497
+ Q +P+FG Y + R+ ++ +++ +D + L ++ N+ + I ++KDVIG+
Sbjct: 871 LMGQKLPSFGPYLERRKKILAASKIRE--NDQNRACSPLQRKHFNSQ-KPIPAIKDVIGK 927
Query: 498 AVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECT 557
++Q + + EL+ +QVVALI+++MCINCGKCYM CNDSGYQAI F PETH V+D CT
Sbjct: 928 SLQYLGTFGELNIMEQVVALIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVSDTCT 987
Query: 558 GCTLCLSI 565
GCTLCLS+
Sbjct: 988 GCTLCLSV 995
>sp|Q28943|DPYD_PIG Dihydropyrimidine dehydrogenase [NADP(+)] OS=Sus scrofa GN=DPYD
PE=1 SV=1
Length = 1025
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/393 (65%), Positives = 309/393 (78%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS +IT+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
IFQGLT++ GFYTSK FLP VA SSK G+C C LP ++G VIVLGAGDTAF
Sbjct: 288 PKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA-CH-SPLPSIRGAVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
+QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D V EA+ P+K +++ PEV+
Sbjct: 406 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVESVNDGK A+W+IHKYIQ + +V KP LP F
Sbjct: 466 PETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ +DLVDISVE+ GLKF NPFGLASA PTT+SSM+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRIV+GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/268 (66%), Positives = 214/268 (79%), Gaps = 3/268 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YNK+DW+ELS+K E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V+IPFF KLTPN+T+I IA+AA EG ADGV+A NTVSGLM L ADG PWPAV
Sbjct: 695 CRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G K TTYGGVSG A RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSAVQNQDFTV+ DY TGL+ LLYLKS +L+GWDGQSP T HQKGKP + + GK
Sbjct: 815 VCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGK 874
Query: 803 AIPNFGEYKKIRENLITE--LNLKKLNS 828
+PNFG Y + R+ +I E + LK+ N+
Sbjct: 875 KLPNFGPYLEQRKKIIAEEKMRLKEQNA 902
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 90/130 (69%), Gaps = 7/130 (5%)
Query: 438 FLFQAIPNFGEYKKIRENLITE--LNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVI 495
+ + +PNFG Y + R+ +I E + LK+ N+ L+ R+ P + I ++KDVI
Sbjct: 871 LMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLE-----RKPFIPKKPIPAIKDVI 925
Query: 496 GQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDE 555
G+A+Q + + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH VTD
Sbjct: 926 GKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDT 985
Query: 556 CTGCTLCLSI 565
CTGCTLCLS+
Sbjct: 986 CTGCTLCLSV 995
>sp|Q5R895|DPYD_PONAB Dihydropyrimidine dehydrogenase [NADP(+)] OS=Pongo abelii GN=DPYD
PE=2 SV=1
Length = 1025
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/393 (65%), Positives = 307/393 (78%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS ++T+ L++ GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
N IFQGLT++ GFYTSK FLP VA SK G+C C LP ++G VIVLGAGDTAF
Sbjct: 288 PNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCA-CH-SPLPSIRGVVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D V EA+ P+K +++G PEV+
Sbjct: 406 MQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSDPKVKEAMSPIKFNRWGLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS VF GGD L++TTVESVNDGK A+W+IHKYIQ + +V KP LP F
Sbjct: 466 PETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYIQSQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ IDLVDISVE+ GLKF NPFGLASA P T++SM+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TAIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRIV+GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 363 bits (931), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 171/267 (64%), Positives = 211/267 (79%), Gaps = 3/267 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YNK+DW EL+KK+E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V+IPFF KLTPN+T+I IA+AA EG A+GV+A NTVSGLM L +DG PWPAV
Sbjct: 695 CRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G K TTYGGVSG A RP+ L+AV+S A+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GIAKRTTYGGVSGTAIRPIALRAVTSTARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSA+QNQDFTV++DY TGL+ LLYLKS +L+ WDGQSP T HQKGKP + + K
Sbjct: 815 VCSAIQNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQSPATVSHQKGKPVPRIAELMDK 874
Query: 803 AIPNFGEYKKIRENLITE--LNLKKLN 827
+P+FG Y + R+ +I E + LK+ N
Sbjct: 875 KLPSFGPYLEQRKKIIAENKIRLKEQN 901
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 7/127 (5%)
Query: 441 QAIPNFGEYKKIRENLITE--LNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQA 498
+ +P+FG Y + R+ +I E + LK+ N + + KR P + ++KDVIG+A
Sbjct: 874 KKLPSFGPYLEQRKKIIAENKIRLKEQN-----IASSPHKRNCFIPKRPVPTIKDVIGKA 928
Query: 499 VQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTG 558
+Q + + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH +TD CTG
Sbjct: 929 LQYLGTFGELSNVEQVVAMIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTITDTCTG 988
Query: 559 CTLCLSI 565
CTLCLS+
Sbjct: 989 CTLCLSV 995
>sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD
PE=1 SV=2
Length = 1025
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/393 (64%), Positives = 307/393 (78%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS ++T+ L++ GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
N IFQGLT++ GFYTSK FLP VA SK G+C C LP ++G VIVLGAGDTAF
Sbjct: 288 PNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCA-CH-SPLPSIRGVVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D V EA+ P+K +++G PEV+
Sbjct: 406 MQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSDPKVKEALSPIKFNRWGLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS VF GGD L++TTVESVNDGK A+W+IHKY+Q + +V KP LP F
Sbjct: 466 PETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYVQSQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ IDLVDISVE+ GLKF NPFGLASA P T++SM+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRI++GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIIRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 365 bits (936), Expect = e-99, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 212/267 (79%), Gaps = 3/267 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YNK+DW EL+KK+E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V+IPFF KLTPN+T+I IA+AA EG A+GV+A NTVSGLM L +DG PWPAV
Sbjct: 695 CRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G K TTYGGVSG A RP+ L+AV+SIA+ P FPIL GGIDSA+ LQF+ +GA +Q
Sbjct: 755 GIAKRTTYGGVSGTAIRPIALRAVTSIARALPGFPILATGGIDSAESGLQFLHSGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSA+QNQDFTV++DY TGL+ LLYLKS +L+ WDGQSP T HQKGKP + + K
Sbjct: 815 VCSAIQNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQSPATVSHQKGKPVPRIAELMDK 874
Query: 803 AIPNFGEYKKIRENLITE--LNLKKLN 827
+P+FG Y + R+ +I E + LK+ N
Sbjct: 875 KLPSFGPYLEQRKKIIAENKIRLKEQN 901
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 85/125 (68%), Gaps = 3/125 (2%)
Query: 441 QAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQ 500
+ +P+FG Y + R+ +I E N +L V+ KR P I ++KDVIG+A+Q
Sbjct: 874 KKLPSFGPYLEQRKKIIAE-NKIRLKEQNVAFSP--LKRNCFIPKRPIPTIKDVIGKALQ 930
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCT 560
+ + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH +TD CTGCT
Sbjct: 931 YLGTFGELSNVEQVVAMIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTITDTCTGCT 990
Query: 561 LCLSI 565
LCLS+
Sbjct: 991 LCLSV 995
>sp|Q28007|DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Bos taurus GN=DPYD
PE=1 SV=1
Length = 1025
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/393 (65%), Positives = 305/393 (77%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS DIT+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSVNDITLSTLKEEGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
IFQGLT++ GFYTSK FLP VA SSK G+C C L I +GTVIVLGAGDTAF
Sbjct: 288 PKKDHIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA-CHSPLLSI-RGTVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFIVFRKGFVNIRAVPEEVELAREEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
MQF RTEQ+E G+W ED +Q LKA+ +ISAFGS L D V EA+ P+K +++ PEV+
Sbjct: 406 MQFVRTEQDETGKWNEDGDQIACLKADVVISAFGSVLSDPKVKEALSPIKFNRWDLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVE+VNDGK A+W+IH+YIQ + +V KP LP F
Sbjct: 466 PETMQTSEPWVFAGGDVVGIANTTVEAVNDGKQASWYIHRYIQSQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ IDLVDISVE+ LKF NPFGLASA PTT+SSM+RRAFE GW FA+TKTFSL KD+VTN
Sbjct: 526 TPIDLVDISVEMAALKFTNPFGLASATPTTSSSMIRRAFEAGWAFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRI++GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIIRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 210/267 (78%), Gaps = 3/267 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YN++DW+ELS+K E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIVIASIMCSYNRNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR +V+IPFF KLTPN+T+I IA+AA EG A+GV+A NTVSGLM L ADG PWPAV
Sbjct: 695 CRWVRQAVRIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKADGTPWPAV 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G +K TTYGGVSG A RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ GA +Q
Sbjct: 755 GREKRTTYGGVSGTAIRPIALRAVTTIARALPEFPILATGGIDSAESGLQFLHGGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSA+QNQDFT++ DY TGL+ LLYLKS +L+ WDGQSP T HQKGKP + GK
Sbjct: 815 VCSAIQNQDFTIIQDYCTGLKALLYLKSIEELQDWDGQSPATKSHQKGKPVPCIAELVGK 874
Query: 803 AIPNFGEYKKIRENLITE--LNLKKLN 827
+P+FG Y + + +I E L LKK N
Sbjct: 875 KLPSFGPYLEKCKKIIAEEKLRLKKEN 901
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 441 QAIPNFGEYKKIRENLITE--LNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQA 498
+ +P+FG Y + + +I E L LKK N + L+ R P + I SVKDVIG+A
Sbjct: 874 KKLPSFGPYLEKCKKIIAEEKLRLKKENVTVLPLE-----RNHFIPKKPIPSVKDVIGKA 928
Query: 499 VQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTG 558
+Q + Y EL+N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH VTD CTG
Sbjct: 929 LQYLGTYGELNNTEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTG 988
Query: 559 CTLCLSI 565
CTLCLS+
Sbjct: 989 CTLCLSV 995
>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd
PE=2 SV=1
Length = 1022
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/393 (63%), Positives = 311/393 (79%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP++ V FE++L+KDLGVK+ E+ L +T+ L+++GY ++IGIG P
Sbjct: 228 TSEIPQFRLPYEVVQFEIDLMKDLGVKVVLEKGLGQNGLTLTSLKEEGYQVVYIGIGLPQ 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
AN IF+GLT E GFYTSK FLP VA +SK G+C C+ + LP L G VIVLGAGDTAF
Sbjct: 288 ANRDKIFEGLTTEQGFYTSKDFLPLVAKASKIGMCN-CRSQ-LPKLHGNVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V VVFRKG TNIRAVPEE++ A EEKCEFLPF+SP +V K+ +++G
Sbjct: 346 DCATSALRCGARRVFVVFRKGFTNIRAVPEEMEAAKEEKCEFLPFLSPHEVIKKNGRVSG 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
++F RTEQ + G W+ DEEQ + LKA++IISAFGS L D V +A+ P+KL+++G PEVN
Sbjct: 406 LRFCRTEQQDDGTWIVDEEQIVHLKADFIISAFGSMLNDPAVTKALDPIKLNRWGTPEVN 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM T+ P VF GGD A ++TTVESVNDGK A+WHIHKYIQ + T+ P LP F
Sbjct: 466 SETMQTTEPWVFAGGDIAGFANTTVESVNDGKQASWHIHKYIQSLHGNTISATPRLPLFH 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
ID VDISVE+CG+KFPNPFGLASAPPTT+++M+RRAFE GWGFA+TKTF L KD+VTN
Sbjct: 526 CSIDTVDISVEMCGIKFPNPFGLASAPPTTSAAMIRRAFEQGWGFALTKTFGLDKDLVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRIV+GTTS H++GP QGSFLNIELISEKTA
Sbjct: 586 VSPRIVRGTTSGHIFGPGQGSFLNIELISEKTA 618
Score = 360 bits (923), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/277 (62%), Positives = 207/277 (74%), Gaps = 3/277 (1%)
Query: 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I+IASIMC+YN+ DW EL+K +++ ADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 635 NIIIASIMCSYNQADWTELAKMAQESQADALELNLSCPHGMGERGMGLACGQDPELVRNI 694
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
WVR + IPFF KLTPN+TNI DIA AAYEG ADGV+A NTVSGLM+L AD PWP +
Sbjct: 695 CRWVRKATSIPFFAKLTPNVTNIVDIATAAYEGGADGVTATNTVSGLMALKADATPWPGI 754
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
G TTYGGVSGNA RP+ L+AVS+IA+ P FPIL GGIDSA+ LQF+ AGA +Q
Sbjct: 755 GRGARTTYGGVSGNAIRPIALRAVSAIARALPGFPILATGGIDSAESGLQFLHAGASVLQ 814
Query: 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGK 802
+CSAVQNQDFTV++DY GL+ LLYLKS +L WDGQSPPT HQKGKP + GK
Sbjct: 815 VCSAVQNQDFTVIEDYCLGLKALLYLKSIEELHDWDGQSPPTIRHQKGKPVPHVSELIGK 874
Query: 803 AIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPR 839
++P+FG Y + + + + KK S V + G R
Sbjct: 875 SLPSFGPYLQTKTQALAK--YKKDASGDVIMDTGAAR 909
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 4/125 (3%)
Query: 441 QAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQ 500
+++P+FG Y + + + + KK S V + G + +N P + I +VKDVI +A++
Sbjct: 874 KSLPSFGPYLQTKTQALAKY--KKDASGDVIMDTGAAR--VNIPKKPIPNVKDVIARALK 929
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCT 560
+ Y ELDN +QV AL++ +MCINCGKCYM CNDSGYQAI F PETH +TD CTGCT
Sbjct: 930 HIGAYQELDNTEQVQALVDPEMCINCGKCYMTCNDSGYQAIKFDPETHLPVITDSCTGCT 989
Query: 561 LCLSI 565
LCLS+
Sbjct: 990 LCLSV 994
>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)]
OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2
Length = 1053
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/402 (60%), Positives = 312/402 (77%), Gaps = 11/402 (2%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
S+EIPQ+RLP+D V+FE++L +D+GVKIE RSL DIT++KL+ G A+FIGIG P
Sbjct: 241 SAEIPQFRLPYDVVDFEIQLARDVGVKIETNRSLCKEDITLDKLKSQGAAAVFIGIGNPE 300
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
+ P+F+GLT E GFYTSK +LP VA +SK G+CG CK+ LP ++G V+VLGAGDTA
Sbjct: 301 PKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCG-CKRTPLPTMRGRVVVLGAGDTAM 359
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA++V + FRKG T IRAVPEE++ A EEKCEFLPF +P +++VKD +I
Sbjct: 360 DCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEFLPFSAPRKINVKDGRIVS 419
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
++FN+TEQ++ G+W EDEEQ + LK +Y+ISAFGSTL ++ VL A++P KL+K+G EV+
Sbjct: 420 IEFNKTEQDDNGKWYEDEEQIVILKCDYVISAFGSTLKEDTVLSALQPCKLNKWGGIEVD 479
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKT----------AAWHIHKYIQEKNNLTV 330
TT TS VF GGD A +++TTVESVNDGKT AAW++H+YIQ K+ +
Sbjct: 480 STTQQTSEAWVFAGGDVAGVAETTVESVNDGKTLMDLTFKIQIAAWNMHRYIQAKHGNVL 539
Query: 331 PDKPCLPKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKT 390
+ P LPKF + ID VDISV++CG+KF NPFGLASAPPTT+ M RRAFE GWGF +TKT
Sbjct: 540 GETPELPKFFTPIDEVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKT 599
Query: 391 FSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKT 432
+ L KD+VTNVSPRIV+G+TS LYGP QGSF+NIELISEK+
Sbjct: 600 YGLDKDLVTNVSPRIVRGSTSGPLYGPNQGSFMNIELISEKS 641
Score = 332 bits (850), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 162/270 (60%), Positives = 203/270 (75%), Gaps = 10/270 (3%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
I++ASIMC YNK+DW+EL+ K+E AGAD LELNLSCPHGMGE+GMGLACGQ PE+V+ I
Sbjct: 660 IVVASIMCVYNKEDWIELATKSEAAGADILELNLSCPHGMGEKGMGLACGQSPEIVKEIC 719
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
WVR+ VKIPFF K+TPNIT++ +IA+AA +G A GV+A NTVS LM + ADGN WPA+G
Sbjct: 720 RWVRACVKIPFFPKMTPNITDVREIARAARDGGASGVTATNTVSSLMHMKADGNAWPAIG 779
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQI 744
K TTYGG+SG+A RP+ +KAVSSIA FPI+ GGI+SA+ L F+ AGA +Q+
Sbjct: 780 NTKRTTYGGMSGSAIRPIAMKAVSSIANELDGFPIMATGGIESAETGLGFLMAGASVLQV 839
Query: 745 CSAVQNQDFTVVDDYITGLQTLLYLKSTQ-LKGWDGQSPPTPVHQKGKPAYQFRDKEGKA 803
CSAVQNQDFTVV+DY TGL+ LLYL + LK WDGQSPP HQKGKP + K
Sbjct: 840 CSAVQNQDFTVVEDYCTGLKALLYLSGAESLKEWDGQSPPVEKHQKGKPILL---QGQKN 896
Query: 804 IPNFGEYKKIRENL----ITELNLKKLNSD 829
+P FG+++ RE L ++E NL L++D
Sbjct: 897 MPFFGKFRDEREKLEALKLSESNL--LDTD 924
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 28/128 (21%)
Query: 443 IPNFGEYKKIRENL----ITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQA 498
+P FG+++ RE L ++E NL L++D + + +T V + +V+DVI
Sbjct: 897 MPFFGKFRDEREKLEALKLSESNL--LDTDNYHFAS-----RPDTQVARVPTVEDVI--- 946
Query: 499 VQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVT-DECT 557
+ VA+I+ DMCINCGKCYM CNDSGYQAITF THQ HVT D+CT
Sbjct: 947 -------------EHEVAIIDHDMCINCGKCYMTCNDSGYQAITFDAVTHQPHVTEDDCT 993
Query: 558 GCTLCLSI 565
GCTLC S+
Sbjct: 994 GCTLCYSV 1001
>sp|Q18164|DPYD_CAEEL Dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis elegans
GN=dpyd-1 PE=3 SV=2
Length = 1059
Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/392 (60%), Positives = 308/392 (78%), Gaps = 1/392 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
S+EIPQ+RLP+D V+FE++L +D+GV+IE R L +T+ KL++ G A+FIGIG P
Sbjct: 241 SAEIPQFRLPYDVVDFEIQLARDIGVQIETNRPLGKDGLTLAKLKEQGAAAVFIGIGNPE 300
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
+ P+F+GLT E GFYTSK +LP VA +SK G+CG CK+ LP ++G V+VLGAGDTA
Sbjct: 301 PKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCG-CKRTPLPTMRGRVVVLGAGDTAM 359
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA++V + FRKG T IRAVPEE++ A EEKCEFLPF +P +++VKD +I
Sbjct: 360 DCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEFLPFSAPRKINVKDGRIVS 419
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
++FN+TEQ++ G+W EDEEQ + LK +Y+ISAFGSTL ++ VL A++P +L+K+G EV+
Sbjct: 420 IEFNKTEQDDNGKWYEDEEQIVILKCDYVISAFGSTLKEDAVLSALQPCQLNKWGGIEVD 479
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TT TS VF GGD A +++TTVESVNDGK AAW++H+YIQ + V + P LP+F
Sbjct: 480 STTQQTSEKWVFAGGDVAGVAETTVESVNDGKIAAWNMHRYIQSLHGNQVSETPELPQFF 539
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ ID VDISV++CG+KF NPFGLASAPPTT+ M RRAFE GWGF +TKT+ L KD+VTN
Sbjct: 540 TPIDEVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTN 599
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKT 432
VSPRIV+G+TS LYGP QGSF+NIELISEK+
Sbjct: 600 VSPRIVRGSTSGPLYGPNQGSFMNIELISEKS 631
Score = 335 bits (859), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 163/264 (61%), Positives = 200/264 (75%), Gaps = 8/264 (3%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
I+IASIMC YNK DW+EL+ K+E+AGAD LELNLSCPHGMGE+GMGLACGQ PE+V+ I
Sbjct: 650 IVIASIMCVYNKADWIELATKSEEAGADILELNLSCPHGMGEKGMGLACGQSPEIVKEIC 709
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
WVR+ VKIPFF K+TPNIT++ +IA+AA +G A GV+A NTVS LM + ADGN WPA+G
Sbjct: 710 RWVRACVKIPFFPKMTPNITDVREIARAARDGGASGVTATNTVSSLMHMKADGNAWPAIG 769
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQI 744
+ K TTYGG+SG+A RP+ +KAVSSIA FPI+ GGI+SA+ L F+ AGA +Q+
Sbjct: 770 STKRTTYGGMSGSAIRPIAMKAVSSIANELDGFPIMATGGIESAETGLGFLMAGASVLQV 829
Query: 745 CSAVQNQDFTVVDDYITGLQTLLYLKSTQ-LKGWDGQSPPTPVHQKGKPAYQFRDKEGKA 803
CSAVQNQDFTVVDDY TGL+ LLYL + LK WDGQSPP HQKGKP + K
Sbjct: 830 CSAVQNQDFTVVDDYCTGLKALLYLSGAESLKNWDGQSPPIEKHQKGKPILL---QGQKK 886
Query: 804 IPNFGEYKKIRENL----ITELNL 823
+P FG+Y+ RE L ++E NL
Sbjct: 887 MPFFGKYRDEREKLEAIKLSESNL 910
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 4/126 (3%)
Query: 441 QAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQ 500
+ +P FG+Y+ RE L +K S+ + +N + +T V + +V+DVIG+A+
Sbjct: 885 KKMPFFGKYRDEREKLEA---IKLSESNLLDTENYHFASRPDTQVSRVPTVEDVIGKALP 941
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVT-DECTGC 559
R+ Y LDN++Q VA+I+DDMCINCGKCYM CNDSGYQAITF P THQ HVT D+CTGC
Sbjct: 942 RIGPYVTLDNQEQKVAIIDDDMCINCGKCYMTCNDSGYQAITFDPVTHQPHVTEDDCTGC 1001
Query: 560 TLCLSI 565
TLC S+
Sbjct: 1002 TLCYSV 1007
>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium
discoideum GN=pyd1 PE=2 SV=1
Length = 1009
Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/398 (56%), Positives = 299/398 (75%), Gaps = 7/398 (1%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
SSEIP YRL ++ V FE++L+KDLGVK+E + L T+E L+K GY AI++GIG P
Sbjct: 227 SSEIPNYRLNYEVVEFEIKLMKDLGVKVEYGKRLGENGFTVESLQKQGYEAIYLGIGMPE 286
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
+ P+F LT + GF++SK FLP+V+ +SK G+CG CK + LP L G VIVLGAGDTAF
Sbjct: 287 PKIDPVFNELTSDQGFFSSKEFLPKVSKASKAGMCG-CKSQ-LPQLNGRVIVLGAGDTAF 344
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSA RCGA++V V FR+G +++RAVPEEV +A +E+CEFLP++ P QV +D K+
Sbjct: 345 DCATSAFRCGASRVTVCFRRGFSDMRAVPEEVDIAKDERCEFLPYVLPKQVIKRDGKVVA 404
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
M+F +TE+ + G + DE+Q ++K +YIISAFGS + V E+ P++ +K+G +++
Sbjct: 405 MEFYKTEKGDDGNYSVDEDQFFRVKCDYIISAFGSQI--GSVAESCSPLQFNKWGTADID 462
Query: 281 YTTMAT-SVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPD-KPCLPK 338
TM + +FCGGD + TTVE+VNDGKTA+W+IHKY+Q + + +PD P LP
Sbjct: 463 PMTMTSKHAEWLFCGGDLVG-NGTTVEAVNDGKTASWNIHKYLQSLHGIPIPDGPPQLPN 521
Query: 339 FMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMV 398
F + IDLVDISVE+CG+KFPNPFGLASA P T+++M+RR+FE GWGFAVTKTFSL KD+V
Sbjct: 522 FFTPIDLVDISVEMCGMKFPNPFGLASATPATSAAMIRRSFEQGWGFAVTKTFSLDKDLV 581
Query: 399 TNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAFIF 436
TNVSPRIV+GTTS H +GP QG+FLNIELISEKT +
Sbjct: 582 TNVSPRIVRGTTSGHHFGPGQGAFLNIELISEKTCHYW 619
Score = 326 bits (835), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 160/274 (58%), Positives = 202/274 (73%), Gaps = 12/274 (4%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
I+IASIMC +NK+DW +L+K E +GAD +ELNLSCPHGMGE+GMGLACGQD E+V +I
Sbjct: 634 IVIASIMCGFNKEDWTQLAKMAEASGADGIELNLSCPHGMGEKGMGLACGQDTELVFHIC 693
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
WVR++ ++PFF KLTPN+T I +IAKAA++G ADGV+AINTVSGLM L D N WPA+G
Sbjct: 694 QWVRAATRLPFFAKLTPNVTEIKEIAKAAHDGGADGVTAINTVSGLMGLKGDSNAWPAIG 753
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQI 744
+K TTYGGVSGNATRP+ L+AVSSI K P++PI+ GG DSAD +QF+ GA VQI
Sbjct: 754 DEKRTTYGGVSGNATRPIALRAVSSIRKSLPDYPIMATGGADSADATIQFLHCGASVVQI 813
Query: 745 CSAVQNQDFTVVDDYITGLQTLLYLKSTQ-LKGWDGQSPPTPVHQKGKPAYQFRDKEGKA 803
CS+VQNQDFTVV DYITGL+T LY++S + L WDGQSPP + K + + K
Sbjct: 814 CSSVQNQDFTVVQDYITGLKTYLYMQSREDLLQWDGQSPPNEIINK--------NPKLKG 865
Query: 804 IPNFGEYKKIRENLITELNLKKLNSDGVSLQNGL 837
+P FG+Y R + TE +K N D ++N L
Sbjct: 866 LPKFGKYLLERNRIDTE---EKQNIDLQKVKNPL 896
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 440 FQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAV 499
+ +P FG+Y R + TE +K N D ++N P P + S+KD I +A+
Sbjct: 863 LKGLPKFGKYLLERNRIDTE---EKQNIDLQKVKN--PLVPSPNPTHPVPSLKDQINRAI 917
Query: 500 QRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
R+ + +L +QVVALI++D CINCGKCYM CNDSGYQAI F +TH VTD CTGC
Sbjct: 918 PRIGRHDDLKRDQQVVALIDEDKCINCGKCYMTCNDSGYQAIKFDGKTHIPLVTDLCTGC 977
Query: 560 TLCLSI 565
LCLS+
Sbjct: 978 DLCLSV 983
>sp|Q0W8E1|PYRDB_UNCMA Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Uncultured methanogenic archaeon RC-I GN=pyrD PE=3
SV=1
Length = 301
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 118/186 (63%), Gaps = 13/186 (6%)
Query: 590 GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDI 649
GADA ELN+SCPH +G G+ CG DPE+VR+I+ V+++VK+P +VKLTPN+T+I I
Sbjct: 115 GADAYELNVSCPH---AKGYGMQCGTDPELVRSITKAVKAAVKVPVWVKLTPNVTDIRPI 171
Query: 650 AKAAYEGKADGVSAINTVSGLMSLSADGNP-WPAVGTKKLTTYGGVSGNATRPMGLKAVS 708
AA EG AD V AINT L +++ D N WP +G + GG+SG A +P+ +K V
Sbjct: 172 GLAAQEGGADAVVAINT---LKAMAIDINTGWPILGNRS----GGLSGPAVKPVAIKCVY 224
Query: 709 SIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLY 768
+ ++ + P++G+GG+ + A++F+ AGA AV+I SAV +D G+ L
Sbjct: 225 DLYEVL-DIPVIGVGGVSNWADAIEFMMAGACAVEIGSAVY-EDIGTFASVSMGISNYLD 282
Query: 769 LKSTQL 774
K+ +L
Sbjct: 283 RKNMKL 288
>sp|Q8ZNL7|PREA_SALTY NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=preA PE=3 SV=1
Length = 411
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
+LIASIM N+ W EL++ E+AGAD +E N SCP M MG GQ PE+V
Sbjct: 103 VLIASIM-GENEQQWQELARLVEEAGADMIECNFSCPQ-MTSHAMGSDVGQSPELVEKYC 160
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGN-PWPAV 683
V+ +P K+TPNI ++ ++A AA G ADG++ INTV + ++ + P V
Sbjct: 161 RAVKRGSSLPMLAKMTPNIGDMCEVALAAKRGGADGIATINTVKSITNIDLNRKIGMPVV 220
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP---NFPILGIGGIDSADVALQFIQAGAH 740
K ++ G SG A +P+ L+ + + +M P +FPI GIGGI++ + A +F+ GA
Sbjct: 221 NGK--SSISGYSGKAVKPIALRFIQQL-RMHPELRDFPISGIGGIETWEDAAEFLLLGAA 277
Query: 741 AVQICSAVQNQDFTVVDDYITGLQTLL 767
+Q+ + + + +V+D +GL L
Sbjct: 278 TLQVTTGIMQYGYRIVEDMASGLSHYL 304
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 490 SVKDVIGQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQ 549
S++++IG A + +LD V IN + C+ CG+CY++C D G+QA+ + +
Sbjct: 311 SLQEMIGLANGNIIPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDGGHQAMEWDEHSRT 370
Query: 550 AHV-TDECTGCTLC 562
H T++C GC LC
Sbjct: 371 PHCNTEKCVGCLLC 384
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIV 406
D+SV CG+KFPNPF L+S+P M +A++ GWG V KT + VSPR
Sbjct: 5 DLSVTFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGIVFKTIGFF--IANEVSPRF- 61
Query: 407 KGTTSRHLYGPEQG--SFLNIELISE 430
HL + G F N+E I+E
Sbjct: 62 -----DHLTKEDTGFIGFKNMEQIAE 82
>sp|Q979G6|PYRDB_THEVO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299
/ JCM 9571 / NBRC 15438 / GSS1) GN=pyrD PE=3 SV=1
Length = 301
Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 13/183 (7%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISL 625
+I S+ YN +++ +LS K E+ G DA+ELNLSCPH +G GL G DP++V +I
Sbjct: 95 IIGSVFA-YNAEEFTKLSVKMEEYGVDAIELNLSCPH---VKGFGLEVGSDPDLVEDIVN 150
Query: 626 WVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685
++S VK+P F KL+PN++NI +IAKAA KAD INTV + +P +
Sbjct: 151 EIKSKVKVPVFAKLSPNVSNIIEIAKAAE--KADAYVLINTVKAMAIDIYSRSPVLS--- 205
Query: 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
YGG+SG A +P+G++ V + K I+G+GGI + A+++I AGA AVQI
Sbjct: 206 ---NLYGGLSGPAIKPVGIRYVYEVKKETGK-EIIGVGGISNYKDAIEYIMAGASAVQIG 261
Query: 746 SAV 748
+A+
Sbjct: 262 TAL 264
>sp|P25889|PREA_ECOLI NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
OS=Escherichia coli (strain K12) GN=preA PE=1 SV=3
Length = 411
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
+LIASIM N+ W EL++ ++AGAD +E N SCP M MG GQ PE+V
Sbjct: 103 VLIASIM-GENEQQWEELARLVQEAGADMIECNFSCPQ-MTSHAMGSDVGQSPELVEKYC 160
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGN-PWPAV 683
V+ +P K+TPNI ++ ++A AA G ADG++AINTV + ++ + P V
Sbjct: 161 RAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIV 220
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKM--FPNFPILGIGGIDSADVALQFIQAGAHA 741
K ++ G SG A +P+ L+ + + +FPI GIGGI++ + A +F+ GA
Sbjct: 221 NGK--SSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAAT 278
Query: 742 VQICSAVQNQDFTVVDDYITGLQTLL 767
+Q+ + + + +V+D +GL L
Sbjct: 279 LQVTTGIMQYGYRIVEDMASGLSHYL 304
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 490 SVKDVIGQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQ 549
S+++++G A + +LD V IN D C+ CG+CY++C D G+QA+ + +T
Sbjct: 311 SLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRT 370
Query: 550 AHV-TDECTGCTLC 562
H T++C GC LC
Sbjct: 371 PHCNTEKCVGCLLC 384
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIV 406
D+S+ CG+KFPNPF L+S+P M +A++ GWG V KT + VSPR
Sbjct: 5 DLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFF--IANEVSPRF- 61
Query: 407 KGTTSRHLYGPEQG--SFLNIELISE 430
HL + G F N+E I+E
Sbjct: 62 -----DHLVKEDTGFIGFKNMEQIAE 82
>sp|Q8X643|PREA_ECO57 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
OS=Escherichia coli O157:H7 GN=preA PE=3 SV=1
Length = 413
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
+LIASIM N+ W EL++ ++AGAD +E N SCP M MG GQ PE+V
Sbjct: 105 VLIASIM-GENEQQWEELARLVQEAGADMIECNFSCPQ-MTSHAMGSDVGQSPELVEKYC 162
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGN-PWPAV 683
V+ +P K+TPNI ++ ++A AA G ADG++AINTV + ++ + P V
Sbjct: 163 RAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIV 222
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKM--FPNFPILGIGGIDSADVALQFIQAGAHA 741
K ++ G SG A +P+ L+ + + +FPI GIGGI++ + A +F+ GA
Sbjct: 223 NGK--SSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAAT 280
Query: 742 VQICSAVQNQDFTVVDDYITGLQTLL 767
+Q+ + + + +V+D +GL L
Sbjct: 281 LQVTTGIMQYGYRIVEDMASGLSHYL 306
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 490 SVKDVIGQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQ 549
S+++++G A + +LD V IN D C+ CG+CY++C D G+QA+ + +T
Sbjct: 313 SLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRT 372
Query: 550 AHV-TDECTGCTLC 562
H T++C GC LC
Sbjct: 373 PHCNTEKCVGCLLC 386
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIV 406
D+S+ CG+KFPNPF L+S+P M +A++ GWG V KT + VSPR
Sbjct: 7 DLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFF--IANEVSPRF- 63
Query: 407 KGTTSRHLYGPEQG--SFLNIELISE 430
HL + G F N+E I+E
Sbjct: 64 -----DHLVKEDTGFIGFKNMEQIAE 84
>sp|Q58070|PYRDB_METJA Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pyrD PE=3
SV=1
Length = 306
Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 116/192 (60%), Gaps = 16/192 (8%)
Query: 566 LIASIMCTYNKDD--WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+I SI Y KD+ + E++KK E+ D +ELN+SCPH +G G GQ+P++ ++
Sbjct: 101 IIGSI---YGKDEEEFAEVAKKMERY-VDIIELNISCPHA---KGYGATIGQNPDLSYDV 153
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV 683
V+ +VKIP F KLTPN+T+I +IA+A + DG+ AINTV G+ P A
Sbjct: 154 CKAVKKAVKIPVFAKLTPNVTDIIEIAQAVVDAGVDGLVAINTVRGMAIDIRAKKPILA- 212
Query: 684 GTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743
+GG+SG A + +G+K V + + F + PI+G+GGI S + A++++ AGA AVQ
Sbjct: 213 -----NKFGGLSGKAIKSIGIKVVWDLYENF-DVPIIGVGGIMSGEDAIEYMMAGASAVQ 266
Query: 744 ICSAVQNQDFTV 755
I S V + + +
Sbjct: 267 IGSGVYYRGYDI 278
>sp|Q9HL35|PYRDB_THEAC Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM
1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=pyrD PE=3
SV=1
Length = 300
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 120/202 (59%), Gaps = 13/202 (6%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISL 625
+I S+ + + + ++ L +K ++ G DA+ELNLSCPH +G GL G DP++V +I
Sbjct: 95 VIGSVFAS-DAESFVNLGRKMQEYGCDAVELNLSCPH---VKGFGLEVGSDPDLVEDIVN 150
Query: 626 WVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685
++S + +P F KL+PN+++I +IAKAA KAD INTV ++ D V T
Sbjct: 151 EMKSKISVPVFAKLSPNVSDIIEIAKAAE--KADAYVLINTVK---AMKIDIRARMPVLT 205
Query: 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
YGG+SG A +P+G++ V + K I+G+GGI + + A+++I AGA AVQI
Sbjct: 206 ---NAYGGLSGPAIKPVGVRYVYEVKKETGK-DIIGVGGITTYEDAVEYIMAGASAVQIG 261
Query: 746 SAVQNQDFTVVDDYITGLQTLL 767
+A+ +V + I+ + T +
Sbjct: 262 TALYTVGKSVFRNIISQMNTFM 283
>sp|B2G5A3|PYRDA_LACRJ Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus reuteri
(strain JCM 1112) GN=pyrD PE=3 SV=1
Length = 308
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 115/179 (64%), Gaps = 18/179 (10%)
Query: 574 YNKDDWLEL-SKKTEKAGADALELNLSCP---HGMGERGMGLACGQDPEMV-RNISLWVR 628
+++D+++++ S+ AG A+ELN+SCP HG G+A G DPE++ R + V+
Sbjct: 108 FSEDEYVKVVSEFANTAGVKAIELNVSCPNVKHG------GMAMGTDPEVLQRLVKQVVK 161
Query: 629 SSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKL 688
+++ IP +VKLTPN+TNI +A+AA +G A+G++ INT++GL P A
Sbjct: 162 AALGIPIYVKLTPNVTNIVPLAQAAEQGGANGLTMINTLTGLSIDLKTRRPALA------ 215
Query: 689 TTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
GG+SG A +P+ L+ + + + + PI+G+GGI+SA+ L+F+ AGA+AVQI +A
Sbjct: 216 NVTGGLSGPAIKPLALRMIHQV-RQVSSLPIIGVGGIESAEDVLEFMMAGANAVQIGAA 273
>sp|A5VHS3|PYRDA_LACRD Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus reuteri
(strain DSM 20016) GN=pyrD PE=3 SV=1
Length = 308
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 115/179 (64%), Gaps = 18/179 (10%)
Query: 574 YNKDDWLEL-SKKTEKAGADALELNLSCP---HGMGERGMGLACGQDPEMV-RNISLWVR 628
+++D+++++ S+ AG A+ELN+SCP HG G+A G DPE++ R + V+
Sbjct: 108 FSEDEYVKVVSEFANTAGVKAIELNVSCPNVKHG------GMAMGTDPEVLQRLVKQVVK 161
Query: 629 SSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKL 688
+++ IP +VKLTPN+TNI +A+AA +G A+G++ INT++GL P A
Sbjct: 162 AALGIPIYVKLTPNVTNIVPLAQAAEQGGANGLTMINTLTGLSIDLKTRRPALA------ 215
Query: 689 TTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
GG+SG A +P+ L+ + + + + PI+G+GGI+SA+ L+F+ AGA+AVQI +A
Sbjct: 216 NVTGGLSGPAIKPLALRMIHQV-RQVSSLPIIGVGGIESAEDVLEFMMAGANAVQIGAA 273
>sp|O59185|PYRDB_PYRHO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=pyrD PE=3 SV=1
Length = 303
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 114/194 (58%), Gaps = 13/194 (6%)
Query: 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF 636
+++ L++K E ADA ELNLSCPH +G G+ GQDP+ V + V+ P
Sbjct: 106 EEFAFLAEKLEPV-ADAFELNLSCPHA---KGYGMEIGQDPKNVYEVVKAVKDVTDKPVI 161
Query: 637 VKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696
KLTPN+ +IT + AA G ADGVSAINTV +++ D + + K+ GG SG
Sbjct: 162 AKLTPNVNDITKLGLAAERGGADGVSAINTVK---AIAIDIYAKRPILSNKV---GGYSG 215
Query: 697 NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVV 756
+P+ L+AV +AK+ + P++GIGGI S A++F+ AGA A+QI +AV + F V
Sbjct: 216 PGIKPIALRAVYDLAKVL-DIPVIGIGGITSWRDAVEFLLAGASALQIGTAVYLRGFKVF 274
Query: 757 DDYITGLQTLLYLK 770
+ G+ + YLK
Sbjct: 275 KEISNGI--IEYLK 286
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVK 407
+ V++ G++F NP LAS ++RRA G G VTK+ + + +P IV+
Sbjct: 6 LEVKLFGIRFENPLILASGVVDMTPELLRRAHNEGAGGVVTKSIGKEPRKGYD-NPTIVE 64
Query: 408 ----GTTSRHLYGPEQGSFLNIELISEKTAF-IFFFLFQAIPNFGEYKKIRENL-----I 457
+ L P +FLN E I E+ F + +F P E+ + E L
Sbjct: 65 LPYGLINAMGLPNPGWEAFLN-EFIDERFDFPVIVSIFGGTPE--EFAFLAEKLEPVADA 121
Query: 458 TELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKD--VIGQAVQRVTNYTEL 508
ELNL ++ G ++ G + + V+ + V D VI + V + T+L
Sbjct: 122 FELNLSCPHAKGYGMEIGQDPKNVYEVVKAVKDVTDKPVIAKLTPNVNDITKL 174
>sp|Q74J29|PYRDA_LACJO Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=pyrD
PE=3 SV=1
Length = 307
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 14/182 (7%)
Query: 570 IMCTYNKDD---WLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISL 625
IM + +D +LE++KK +G +ALE+N+SCP+ + + GM + G P++V ++
Sbjct: 99 IMASVGGEDEAGYLEVAKKLSDSGLVNALEINVSCPN-VNQGGM--SFGVHPDVVEELTK 155
Query: 626 WVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685
++S VKIP +VKLTPN+T+IT IAKAA G ADG+S INT+ G M + + P +G
Sbjct: 156 KIKSLVKIPIYVKLTPNVTDITQIAKAAENGGADGLSLINTLLG-MEIDVETR-KPVLGH 213
Query: 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
GG+SG A +P+ ++ V + + PI+G+GGI SA ++FI AGA+AV +
Sbjct: 214 N----IGGLSGEAVKPIAIRMVHQV-RESTTLPIIGMGGISSAKDVIEFILAGANAVAVG 268
Query: 746 SA 747
+A
Sbjct: 269 TA 270
>sp|P25996|PYRDB_BACSU Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus subtilis (strain 168) GN=pyrD PE=1 SV=1
Length = 311
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
DD++E+++ KA ALELN+SCP+ + G+A G +PEM +++ V+ +P
Sbjct: 104 DDYVEVAEHISKAPNVHALELNISCPN---VKTGGIAFGTNPEMAADLTKAVKEVSDVPV 160
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NIT+IA A E ADG++ INT+ G+ G P A T GG+S
Sbjct: 161 YVKLSPNVANITEIALAIEEAGADGLTMINTLIGMRLDLKTGKPILANKT------GGLS 214
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++M N PI+G+GG+ +A+ AL+F+ AGA AV + +A
Sbjct: 215 GPAVKPVAIRMVYEVSQMV-NIPIIGMGGVQTAEDALEFLLAGASAVAVGTA 265
>sp|Q9V0Y6|PYRDB_PYRAB Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pyrD PE=3
SV=2
Length = 299
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 581 ELSKKTEKAG--ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVK 638
E + EK G ADA ELNLSCPH +G G+ GQ PE V + V+ P K
Sbjct: 103 EFAFLAEKLGEVADAFELNLSCPHA---KGYGMEIGQKPENVYEVVKAVKDVTDKPVIAK 159
Query: 639 LTPNITNITDIAKAAYEGKADGVSAINTVSGL-MSLSADGNPWPAVGTKKLTTYGGVSGN 697
LTPN+++I ++ AA + ADGVSAINTV + + + A P + K +GG SG
Sbjct: 160 LTPNVSDIRELGLAAEKAGADGVSAINTVKAIAIDIYAK---RPILSNK----FGGYSGP 212
Query: 698 ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVD 757
+P+ L+AV +A + P++GIGGI + A++F+ AGA A+QI +AV + F+V
Sbjct: 213 GVKPIALRAVYDLASSL-DIPVIGIGGITTWQDAVEFLLAGASALQIGTAVYLRGFSVFR 271
Query: 758 DYITGLQTLL 767
+ G+ L
Sbjct: 272 EIAEGISRYL 281
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVK 407
+ V + G+KF NP LAS ++RRA G G VTK+ ++ +P IV+
Sbjct: 2 LEVNLFGIKFKNPLILASGVVDMTPELLRRAHREGAGGVVTKSIGMEPRKGYE-NPTIVE 60
Query: 408 ----GTTSRHLYGPEQGSFLNIELISEKTAF-IFFFLFQAIPNFGEYKKIRENL-----I 457
+ L P +FL E EK F + +F P E+ + E L
Sbjct: 61 LPYGLINAMGLPNPGWEAFLE-EFRKEKFDFPVIVSIFGGTPE--EFAFLAEKLGEVADA 117
Query: 458 TELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKD--VIGQAVQRVTNYTEL 508
ELNL ++ G ++ G + V+ + V D VI + V++ EL
Sbjct: 118 FELNLSCPHAKGYGMEIGQKPENVYEVVKAVKDVTDKPVIAKLTPNVSDIREL 170
>sp|Q047M3|PYRDA_LACDB Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=pyrD PE=3 SV=1
Length = 307
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 111/174 (63%), Gaps = 11/174 (6%)
Query: 575 NKDDWLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKI 633
++DD++E++KK +G +ALE+N+SCP+ + + GM + G +V ++ ++ +V +
Sbjct: 107 SEDDYVEVAKKLSASGLVNALEINVSCPN-VAQGGM--SFGVHAGVVEELTKKIKMAVAL 163
Query: 634 PFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693
P +VKLTPN+T+I +IAKAA G ADG+S INTV G M + P +G GG
Sbjct: 164 PIYVKLTPNVTDIVEIAKAAESGGADGISMINTVLG-MRIDVK-TRKPLLGHN----MGG 217
Query: 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
+SG A +P+ ++ +S + + PI+G+GGI +A ++FI AGA+AV + SA
Sbjct: 218 LSGEAVKPIAIRMISQV-RQVTQLPIIGMGGISTAQDVIEFILAGANAVAVGSA 270
>sp|Q1G864|PYRDA_LACDA Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=pyrD PE=3 SV=1
Length = 307
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 111/174 (63%), Gaps = 11/174 (6%)
Query: 575 NKDDWLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKI 633
++DD++E++KK +G +ALE+N+SCP+ + + GM + G +V ++ ++ +V +
Sbjct: 107 SEDDYVEVAKKLSASGLVNALEINVSCPN-VAQGGM--SFGVHAGVVEELTKKIKMAVAL 163
Query: 634 PFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693
P +VKLTPN+T+I +IAKAA G ADG+S INTV G M + P +G GG
Sbjct: 164 PIYVKLTPNVTDIVEIAKAAESGGADGISMINTVLG-MRIDVK-TRKPLLGHN----MGG 217
Query: 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
+SG A +P+ ++ +S + + PI+G+GGI +A ++FI AGA+AV + SA
Sbjct: 218 LSGEAVKPIAIRMISQV-RQVTQLPIIGMGGISTAQDVIEFILAGANAVAVGSA 270
>sp|Q8PW56|PYRDB_METMA Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=pyrD PE=3 SV=1
Length = 314
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 107/186 (57%), Gaps = 11/186 (5%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISL 625
+IASI ++ E+++ A DA ELN+SCPH G G A G +P +V ++
Sbjct: 106 VIASIFGG-TPSEFAEVAEGLLPAKPDAFELNVSCPH---AEGYGAAIGSNPCLVEAVTA 161
Query: 626 WVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685
V+ V +P +VKLTPN+ +IT I AA G AD V AINTV G+ G +P +G
Sbjct: 162 AVKDVVNVPVWVKLTPNVADITCIGNAAESGGADAVVAINTVKGMAIDIESG--YPVLGN 219
Query: 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
+ GG+SG A +P+ +K V + P++G+GG+ S + A++ I AGA AVQ+
Sbjct: 220 RS----GGLSGKAVKPVAVKCVYDLFTAL-EIPVIGVGGVSSWEDAVEMIMAGAAAVQVG 274
Query: 746 SAVQNQ 751
SAV ++
Sbjct: 275 SAVYDR 280
>sp|Q8TT55|PYRDB_METAC Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=pyrD PE=3 SV=1
Length = 311
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 12/205 (5%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISL 625
+IASI ++ E+++ A DALELN+SCPH G G A G +P +V ++
Sbjct: 103 VIASIFGG-APSEFAEVAEGLLPAKPDALELNVSCPH---AEGYGAAVGSNPCLVEAVTA 158
Query: 626 WVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685
V+ V +P +VKLTPN+ +IT I AA G AD V AINTV G+ G +P +G
Sbjct: 159 AVKDVVNVPVWVKLTPNVADITCIGNAAESGGADAVVAINTVKGMAIDIESG--YPVLGN 216
Query: 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
+ GG+SG A +P+ +K V + P++G+GG+ S + A++ + AGA AVQ+
Sbjct: 217 RS----GGLSGKAVKPVAVKCVYDLYTAL-EIPVIGVGGVSSWEDAVELMMAGAAAVQVG 271
Query: 746 SAVQNQDFTVVDDYITGLQTLLYLK 770
SAV ++ + + G++ L K
Sbjct: 272 SAVYDR-VDIFSEIGAGIEAFLERK 295
>sp|A8YVZ9|PYRDA_LACH4 Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
helveticus (strain DPC 4571) GN=pyrD PE=3 SV=1
Length = 307
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 108/174 (62%), Gaps = 11/174 (6%)
Query: 575 NKDDWLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKI 633
++DD++E++KK +G +ALE+N+SCP+ + + GM + G +V ++ ++ +V +
Sbjct: 107 SEDDYVEVAKKLSASGLVNALEINVSCPN-VAQGGM--SFGVHAGVVEELTKKIKMAVAL 163
Query: 634 PFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693
P +VKLTPN+T+I +IAKAA G ADG+S INT+ G+ P GG
Sbjct: 164 PIYVKLTPNVTDIVEIAKAAESGGADGISMINTLLGMRIDIKTRKPLLG------HNMGG 217
Query: 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
+SG A +P+ ++ +S + + PI+G+GGI +A ++FI AGA+AV + SA
Sbjct: 218 LSGEAVKPIAIRMISQV-RQVTQLPIIGMGGISTAQDVIEFILAGANAVAVGSA 270
>sp|A6TVS0|PYRDB_ALKMQ Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Alkaliphilus metalliredigens (strain QYMF) GN=pyrD
PE=3 SV=1
Length = 302
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF 636
+D+ E+ KK A D LELN+SCP+ + G+ G DP MV ++ V+ K P
Sbjct: 108 EDYCEVVKKLGDADVDLLELNISCPN---VKAGGVCFGTDPFMVEEVTKAVKKVAKQPLI 164
Query: 637 VKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696
VKLTPN+T+I IAKAA G ADG+S INT+ G+ P A GG SG
Sbjct: 165 VKLTPNVTDIVPIAKAAVAGGADGISLINTLLGMAIDIHKRKPILA------NVMGGFSG 218
Query: 697 NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA-VQNQDFTV 755
A +P+ L+ V +A + PI+G+GGI + + A++FI AGA V + +A N T+
Sbjct: 219 PAIKPVALRMVYQVANAV-DVPIIGMGGIMTGEDAVEFILAGASGVAVGTANFINPRATI 277
Query: 756 VDDYITGLQTLLYLKSTQLK 775
D I G+Q Y++ +K
Sbjct: 278 --DVIEGIQG--YMEQYSIK 293
>sp|A9KKR5|PYRDB_CLOPH Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
18823 / ISDg) GN=pyrD PE=3 SV=1
Length = 300
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 108/177 (61%), Gaps = 10/177 (5%)
Query: 571 MCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS 630
+C + +++E+ ++ + D LELN+SCP+ + +A GQDP+M+ I ++
Sbjct: 99 VCGKSVKEYVEVVERLSEEAVDLLELNISCPN---VKEGCIAFGQDPKMIAMIMDEIKRH 155
Query: 631 VKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTT 690
K P VKL+PN+T+IT++AKAA G AD +S INT++G M + + + A+ K
Sbjct: 156 AKQPVIVKLSPNVTDITEMAKAAEAGGADALSLINTLTG-MKIDINHRAF-AIANKT--- 210
Query: 691 YGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
GG+SG A +P+ ++ V +A PI+G+GGI +A+ AL+FI AGA V + +A
Sbjct: 211 -GGMSGPAVKPIAVRMVYQVANAV-KLPIIGMGGIQNAEDALEFIMAGATVVAVGTA 265
>sp|Q5FJB5|PYRDA_LACAC Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=pyrD PE=3 SV=1
Length = 307
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 112/182 (61%), Gaps = 14/182 (7%)
Query: 570 IMCTYNKD---DWLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISL 625
IM + D D++E++KK + +ALE+N+SCP+ + + GM + G P++V ++
Sbjct: 99 IMASVGGDSESDYVEVAKKLSDSDLVNALEINVSCPN-VAQGGM--SFGVHPDVVEELTK 155
Query: 626 WVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685
++ V +P +VKLTPN+T+I IA+AA +G ADG+S INTV G M + P +G
Sbjct: 156 KIKDVVDVPIYVKLTPNVTDIVAIAQAAEKGGADGISMINTVLG-MDIDVQTR-RPVLGH 213
Query: 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745
GG+SG A +P+ ++ +S + + PI+G+GGI SA+ ++F+ AGA AV +
Sbjct: 214 N----VGGLSGEAVKPIAIRMISQVYQNV-TLPIIGMGGISSAEDVIKFMLAGASAVAVG 268
Query: 746 SA 747
+A
Sbjct: 269 TA 270
>sp|Q8RG85|PYRDB_FUSNN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=pyrD PE=3
SV=1
Length = 304
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 105/176 (59%), Gaps = 19/176 (10%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCP---HGMGERGMGLACGQDPEMVRNISLWVRSSVK 632
+D++ ++ K K+ ALELN+SCP HG G+ G DP + RN++ V++
Sbjct: 107 EDYVYVANKISKSPNVKALELNISCPNVKHG------GIQFGTDPNVARNLTEKVKAVSS 160
Query: 633 IPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYG 692
+P +VKL+PN+T+I +AKA G ADG++ INT+ G++ G P A T G
Sbjct: 161 VPVYVKLSPNVTDIVAMAKAVETGGADGLTMINTLVGIVLDRKTGKPIIA------NTTG 214
Query: 693 GVSGNATRPMGLKAVSSIAKMFPNFPILGIGGI-DSADVALQFIQAGAHAVQICSA 747
G+SG A RP+ ++ V +A+ N PI+G+GG+ D DV + FI AGA AV + +A
Sbjct: 215 GLSGPAIRPVAIRMVYQVAQAV-NIPIIGMGGVMDEWDV-IDFISAGASAVAVGTA 268
>sp|B5YJH1|PYRDB_THEYD Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=pyrD PE=3 SV=1
Length = 303
Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 19/178 (10%)
Query: 575 NKDDWLELSKKT-EKAGADALELNLSCPHGMGE-RGMGLACGQDPEMVRNISLWVRSSVK 632
N D+++E++K E G ALE+N+SCP+ E R MGL +PE++R VR +K
Sbjct: 104 NLDEYIEVAKLLDETEGVHALEMNVSCPNKTSEWRKMGL----EPELLREAIKRVRLHIK 159
Query: 633 IPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKL---T 689
P VKL P +T I +A+ E AD VS INT+ ++ + T+K T
Sbjct: 160 KPLIVKLAPQVTEIALMARICEEEGADAVSLINTIPAMVI---------DIKTRKSMIGT 210
Query: 690 TYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
GG+SG A RP+ L+AV +A+ P++G+GGI SA+ ALQF+ AGA A+Q+ +A
Sbjct: 211 LTGGLSGPAIRPVALRAVWEVAQAV-KIPVIGVGGIVSAEDALQFLIAGAKAIQVGTA 267
>sp|A7GRK9|PYRDB_BACCN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
GN=pyrD PE=3 SV=1
Length = 309
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 107/172 (62%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++KK KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKKISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+TNI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVTNIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V ++++ + PI+G+GGI+SA+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQVV-DIPIIGMGGIESAEDVIEFFYAGASAVAVGTA 267
>sp|Q5JHR7|PYRDB_PYRKO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=pyrD PE=3 SV=1
Length = 302
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 101/177 (57%), Gaps = 10/177 (5%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIA 650
ADA ELNLSCPH +G G+ GQ PE V + V+ + P KLTPNI +IT +
Sbjct: 119 ADAFELNLSCPHA---KGYGMEIGQKPENVYAVVKAVKDATDKPVIAKLTPNIDDITKLG 175
Query: 651 KAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710
AA AD VSAINT L +++ D + + K+ GG SG +P+ L+AV +
Sbjct: 176 LAAENAGADAVSAINT---LKAIAIDIYARKPILSNKV---GGYSGPGVKPVALRAVYDL 229
Query: 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767
A+ + P++GIGGI + A++F+ AGA A+QI +AV + + V + G++ L
Sbjct: 230 ARTL-DIPVIGIGGITTWQDAVEFLLAGASALQIGTAVSLRGWKVFREINEGIERYL 285
>sp|B7GFA1|PYRDB_ANOFW Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=pyrD PE=3 SV=1
Length = 312
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
++++E++K+ KA ALELN+SCP+ + G+A G PE+ ++ V+ +P
Sbjct: 106 EEYVEVAKRISKAPNVHALELNISCPN---VKKGGIAFGTVPEVAAELTRAVKEVSDVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+TNI +AKA + ADG++ INT+ G+ G P A GT GG+S
Sbjct: 163 YVKLSPNVTNIVAMAKAIEQAGADGLTMINTLVGMRIDVKTGKPILANGT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ + +++ + PI+G+GGI SA+ ++F AGA AV I +A
Sbjct: 217 GPAIKPIAIRMIYEVSQAV-SLPIIGMGGIQSAEDVIEFFYAGASAVAIGTA 267
>sp|A0AJT8|PYRDB_LISW6 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Listeria welshimeri serovar 6b (strain ATCC 35897 /
DSM 20650 / SLCC5334) GN=pyrD PE=3 SV=1
Length = 304
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 23/189 (12%)
Query: 576 KDDWLEL-SKKTEKAGADALELNLSCP---HGMGERGMGLACGQDPEMVRNISLWVRSSV 631
+DD++E+ S+ E A+ELN+SCP HG G+A G DPE+ ++ V+S
Sbjct: 105 EDDYVEVCSRIGESKAVKAIELNISCPNVKHG------GIAFGTDPEVAHRLTKAVKSVA 158
Query: 632 KIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTY 691
+P +VKL+PN+ +I IA+A ADG++ INT+ G+ P A GT
Sbjct: 159 SVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLGMRIDLKTRKPIIANGT------ 212
Query: 692 GGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751
GG+SG A +P+ ++ + + + N PI+G+GG+ + D L+F+ AGA AV AV
Sbjct: 213 GGLSGPAIKPVAIRMIHQV-RSVSNIPIIGMGGVQTVDDVLEFLIAGADAV----AVGTM 267
Query: 752 DFTVVDDYI 760
+FT D +I
Sbjct: 268 NFT--DPFI 274
>sp|A7Z4H4|PYRDB_BACA2 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus amyloliquefaciens (strain FZB42) GN=pyrD
PE=3 SV=1
Length = 311
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
DD+ E+++ +A ALELN+SCP+ + G+A G DP M ++ V+ +P
Sbjct: 104 DDYKEVAEHISQAPNVHALELNISCPN---VKTGGIAFGTDPVMAAELTKAVKEVSAVPV 160
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NIT+IAKA ADG++ INT+ G+ G P A T GG+S
Sbjct: 161 YVKLSPNVANITEIAKAIEAAGADGLTMINTLIGMRLDLKTGRPILANKT------GGLS 214
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ + PI+G+GG+ +A+ AL+F+ AGA AV + +A
Sbjct: 215 GPAIKPVAIRMVYEVSQAV-HIPIIGMGGVQTAEDALEFLLAGASAVAVGTA 265
>sp|Q92AH5|PYRDB_LISIN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=pyrD PE=3 SV=1
Length = 304
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 23/189 (12%)
Query: 576 KDDWLEL-SKKTEKAGADALELNLSCP---HGMGERGMGLACGQDPEMVRNISLWVRSSV 631
+DD++++ S+ E A+ELN+SCP HG G+A G DPE+ ++ V+S
Sbjct: 105 EDDYVQVCSRIGESKAVKAIELNISCPNVKHG------GIAFGTDPEVAHRLTKAVKSVA 158
Query: 632 KIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTY 691
+P +VKL+PN+ +I IA+A ADG++ INT+ G+ P A GT
Sbjct: 159 SVPVYVKLSPNVADIISIAQAIEAAGADGLTMINTLLGMRIDLKTRKPVIANGT------ 212
Query: 692 GGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751
GG+SG A +P+ ++ + + + N PI+G+GG+ + D L+F+ AGA AV AV
Sbjct: 213 GGLSGPAIKPVAIRMIHQV-RAVSNIPIIGMGGVQTVDDVLEFLIAGADAV----AVGTM 267
Query: 752 DFTVVDDYI 760
+FT D +I
Sbjct: 268 NFT--DPFI 274
>sp|A9VTC4|PYRDB_BACWK Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrD
PE=3 SV=1
Length = 309
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKAISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ L+ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVALRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|A8FD19|PYRDB_BACP2 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus pumilus (strain SAFR-032) GN=pyrD PE=3 SV=1
Length = 310
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
DD++E++++ +A ALELN+SCP+ + G+A G DP+M ++ V+ +P
Sbjct: 104 DDYVEVAEQISQAKNVHALELNISCPN---VKTGGIAFGTDPQMAAALTKAVKDVSSVPV 160
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IA+A ADG++ INT+ G+ G P A T GG+S
Sbjct: 161 YVKLSPNVANIVEIAQAIESAGADGLTMINTLIGMRLDLKTGKPILANKT------GGLS 214
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ + PI+G+GG+ +A+ L+F+ AGA AV + +A
Sbjct: 215 GPAIKPVAVRMVHEVSQAV-SIPIIGMGGVQNAEDVLEFLLAGASAVAVGTA 265
>sp|A0RHQ6|PYRDB_BACAH Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus thuringiensis (strain Al Hakam) GN=pyrD PE=3
SV=1
Length = 309
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIANAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|Q6HET0|PYRDB_BACHK Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|Q636E2|PYRDB_BACCZ Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus (strain ZK / E33L) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|B9IVW1|PYRDB_BACCQ Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus (strain Q1) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|B7HLL8|PYRDB_BACC7 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus (strain AH187) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|C1EPP8|PYRDB_BACC3 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus (strain 03BB102) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|Q732I5|PYRDB_BACC1 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus (strain ATCC 10987) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|B7JJX1|PYRDB_BACC0 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus cereus (strain AH820) GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
>sp|Q81WF4|PYRDB_BACAN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus anthracis GN=pyrD PE=3 SV=1
Length = 309
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 11/172 (6%)
Query: 577 DDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635
+D++ ++K+ KA ALELN+SCP+ + G+A G +PE+ +++ V+ ++P
Sbjct: 106 EDYVAVAKEISKAPNVHALELNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPV 162
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695
+VKL+PN+ NI +IAKA ADG++ INT+ G+ P A T GG+S
Sbjct: 163 YVKLSPNVANIVEIAKAIENAGADGLTMINTLLGMRLDLKTAKPILANRT------GGLS 216
Query: 696 GNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
G A +P+ ++ V +++ N PI+G+GGI++A+ ++F AGA AV + +A
Sbjct: 217 GPAIKPVAIRMVHEVSQAV-NIPIIGMGGIETAEDVIEFFYAGASAVAVGTA 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,399,336
Number of Sequences: 539616
Number of extensions: 13502486
Number of successful extensions: 40405
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 459
Number of HSP's that attempted gapping in prelim test: 38988
Number of HSP's gapped (non-prelim): 1342
length of query: 842
length of database: 191,569,459
effective HSP length: 126
effective length of query: 716
effective length of database: 123,577,843
effective search space: 88481735588
effective search space used: 88481735588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)