Query psy16199
Match_columns 842
No_of_seqs 660 out of 4675
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:17:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1799|consensus 100.0 3.5E-63 7.6E-68 503.8 16.5 454 236-835 4-458 (471)
2 PLN02495 oxidoreductase, actin 100.0 4.9E-59 1.1E-63 508.9 33.2 355 344-835 7-372 (385)
3 COG0167 PyrD Dihydroorotate de 100.0 4E-55 8.6E-60 460.9 24.3 292 463-780 8-306 (310)
4 PLN02826 dihydroorotate dehydr 100.0 6.1E-51 1.3E-55 450.1 26.3 294 463-780 80-406 (409)
5 PRK08318 dihydropyrimidine deh 100.0 6.8E-49 1.5E-53 445.0 29.9 313 345-780 1-318 (420)
6 KOG1436|consensus 100.0 2.5E-49 5.4E-54 399.4 19.3 290 462-780 89-396 (398)
7 PRK02506 dihydroorotate dehydr 100.0 1.7E-48 3.7E-53 421.5 25.3 300 347-780 1-306 (310)
8 cd02940 DHPD_FMN Dihydropyrimi 100.0 7.8E-48 1.7E-52 416.2 28.4 297 347-763 1-299 (299)
9 cd04739 DHOD_like Dihydroorota 100.0 3.7E-45 8.1E-50 398.5 31.5 298 347-780 1-302 (325)
10 cd04741 DHOD_1A_like Dihydroor 100.0 1.6E-45 3.4E-50 396.3 28.0 285 351-767 2-294 (294)
11 PRK07259 dihydroorotate dehydr 100.0 3.9E-44 8.4E-49 389.2 30.4 296 347-780 1-298 (301)
12 PRK07565 dihydroorotate dehydr 100.0 3.5E-43 7.6E-48 385.9 30.3 302 347-780 2-304 (334)
13 cd04740 DHOD_1B_like Dihydroor 100.0 2.8E-42 6E-47 374.2 30.6 292 350-780 2-295 (296)
14 PF01180 DHO_dh: Dihydroorotat 100.0 1.1E-43 2.4E-48 384.3 19.2 288 348-767 2-295 (295)
15 TIGR01036 pyrD_sub2 dihydrooro 100.0 2.5E-43 5.4E-48 384.0 21.8 265 463-763 52-335 (335)
16 PRK05286 dihydroorotate dehydr 100.0 3E-42 6.5E-47 378.6 23.1 273 463-771 55-344 (344)
17 TIGR01037 pyrD_sub1_fam dihydr 100.0 1.8E-41 4E-46 368.3 28.5 295 348-780 1-298 (300)
18 cd04738 DHOD_2_like Dihydrooro 100.0 2E-39 4.4E-44 354.4 26.4 278 344-763 35-327 (327)
19 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 1.2E-38 2.5E-43 344.9 27.2 286 350-762 1-289 (289)
20 PRK12779 putative bifunctional 100.0 2.8E-36 6.1E-41 368.0 29.9 291 25-323 329-627 (944)
21 PRK12831 putative oxidoreducta 100.0 1.7E-35 3.8E-40 339.4 29.8 291 25-324 163-462 (464)
22 PRK12775 putative trifunctiona 100.0 1.4E-34 3E-39 356.3 35.7 295 25-326 453-758 (1006)
23 PRK12778 putative bifunctional 100.0 1.3E-34 2.7E-39 351.7 30.1 291 25-324 454-751 (752)
24 TIGR01316 gltA glutamate synth 100.0 1.1E-33 2.4E-38 324.0 32.9 287 25-322 156-449 (449)
25 PRK12814 putative NADPH-depend 100.0 2.6E-33 5.7E-38 333.7 32.0 283 25-325 216-503 (652)
26 PRK12769 putative oxidoreducta 100.0 7.2E-33 1.6E-37 331.4 29.6 293 25-324 350-653 (654)
27 PRK12810 gltD glutamate syntha 100.0 1.5E-32 3.2E-37 316.9 28.3 289 24-325 165-467 (471)
28 PRK11749 dihydropyrimidine deh 100.0 2.2E-32 4.8E-37 314.7 29.7 288 24-325 162-454 (457)
29 PRK12809 putative oxidoreducta 100.0 2.5E-32 5.3E-37 325.3 30.0 294 25-325 333-637 (639)
30 PRK09853 putative selenate red 100.0 2.1E-32 4.5E-37 328.2 29.1 277 25-322 562-841 (1019)
31 TIGR01318 gltD_gamma_fam gluta 100.0 1.2E-31 2.5E-36 308.3 32.1 292 25-323 164-466 (467)
32 TIGR03315 Se_ygfK putative sel 100.0 5.3E-31 1.1E-35 318.0 28.2 276 25-321 560-838 (1012)
33 TIGR01317 GOGAT_sm_gam glutama 100.0 2E-30 4.4E-35 299.2 28.8 294 24-325 165-481 (485)
34 PRK12771 putative glutamate sy 100.0 3.2E-29 7E-34 295.4 34.3 283 25-325 160-446 (564)
35 PRK13984 putative oxidoreducta 100.0 2.3E-29 5E-34 299.4 28.4 285 25-324 306-603 (604)
36 PLN02852 ferredoxin-NADP+ redu 100.0 1.8E-29 3.9E-34 287.0 25.2 291 24-324 50-423 (491)
37 COG0493 GltD NADPH-dependent g 100.0 3.8E-30 8.2E-35 289.6 16.9 297 20-324 141-453 (457)
38 PRK12770 putative glutamate sy 100.0 2.8E-27 6E-32 263.5 28.8 291 24-324 40-351 (352)
39 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3.7E-28 8.1E-33 273.3 21.0 221 61-320 104-334 (454)
40 KOG0399|consensus 100.0 2.1E-28 4.5E-33 279.1 16.6 293 22-323 1805-2120(2142)
41 TIGR01421 gluta_reduc_1 glutat 99.9 2.2E-26 4.8E-31 264.1 21.5 254 23-319 23-326 (450)
42 TIGR01292 TRX_reduct thioredox 99.9 9.4E-26 2E-30 245.3 24.6 261 24-322 22-300 (300)
43 COG0492 TrxB Thioredoxin reduc 99.9 1.9E-25 4.2E-30 240.1 24.8 262 24-325 25-303 (305)
44 TIGR01424 gluta_reduc_2 glutat 99.9 4.3E-26 9.4E-31 261.8 21.0 264 12-319 12-324 (446)
45 PRK06370 mercuric reductase; V 99.9 9.5E-26 2.1E-30 260.4 23.8 222 58-319 101-332 (463)
46 TIGR00736 nifR3_rel_arch TIM-b 99.9 4.2E-26 9.1E-31 233.4 17.6 189 520-751 35-226 (231)
47 TIGR00742 yjbN tRNA dihydrouri 99.9 6.7E-26 1.4E-30 245.0 17.4 176 564-763 55-240 (318)
48 TIGR02053 MerA mercuric reduct 99.9 1.7E-25 3.6E-30 258.5 21.5 257 24-319 22-327 (463)
49 PRK06467 dihydrolipoamide dehy 99.9 3.6E-25 7.9E-30 255.5 22.7 221 60-319 102-335 (471)
50 PRK06116 glutathione reductase 99.9 2.2E-25 4.7E-30 256.6 20.2 217 59-319 101-326 (450)
51 TIGR03140 AhpF alkyl hydropero 99.9 3.1E-25 6.7E-30 258.6 20.4 263 24-324 234-514 (515)
52 PRK15317 alkyl hydroperoxide r 99.9 7.3E-25 1.6E-29 255.8 22.6 265 24-325 233-514 (517)
53 PRK07846 mycothione reductase; 99.9 1.7E-24 3.7E-29 248.4 25.1 217 61-319 99-323 (451)
54 PRK07845 flavoprotein disulfid 99.9 9.1E-25 2E-29 252.0 22.5 220 58-319 99-335 (466)
55 PRK08010 pyridine nucleotide-d 99.9 4.4E-25 9.5E-30 253.4 19.7 254 24-319 25-315 (441)
56 PLN02546 glutathione reductase 99.9 3.5E-25 7.5E-30 257.9 18.8 220 56-319 183-411 (558)
57 PRK09564 coenzyme A disulfide 99.9 2.7E-24 5.9E-29 247.3 25.7 270 15-319 15-315 (444)
58 KOG0404|consensus 99.9 1.1E-24 2.3E-29 212.3 18.3 269 25-324 31-320 (322)
59 PRK06416 dihydrolipoamide dehy 99.9 1.2E-24 2.6E-29 251.3 22.3 255 24-319 26-332 (462)
60 TIGR03385 CoA_CoA_reduc CoA-di 99.9 3.7E-24 8.1E-29 244.9 25.9 268 15-319 2-302 (427)
61 PLN02507 glutathione reductase 99.9 6.1E-25 1.3E-29 254.6 19.3 217 59-319 132-361 (499)
62 PRK07251 pyridine nucleotide-d 99.9 1.1E-24 2.4E-29 249.8 20.7 255 23-319 24-314 (438)
63 PRK05249 soluble pyridine nucl 99.9 1.6E-24 3.4E-29 250.4 21.2 220 58-319 101-333 (461)
64 PRK06567 putative bifunctional 99.9 8.5E-24 1.8E-28 250.6 27.7 279 12-325 376-772 (1028)
65 PRK10262 thioredoxin reductase 99.9 1.4E-24 3E-29 238.9 19.3 266 24-325 28-317 (321)
66 PRK10415 tRNA-dihydrouridine s 99.9 7.1E-25 1.5E-29 238.6 16.5 170 564-762 65-240 (321)
67 PRK07818 dihydrolipoamide dehy 99.9 1.1E-23 2.4E-28 243.4 26.2 195 86-319 133-334 (466)
68 TIGR03143 AhpF_homolog putativ 99.9 6.2E-24 1.3E-28 249.6 23.8 263 24-325 26-311 (555)
69 TIGR03452 mycothione_red mycot 99.9 3.4E-24 7.3E-29 246.1 20.7 214 64-319 105-326 (452)
70 PRK14989 nitrite reductase sub 99.9 5.9E-24 1.3E-28 258.0 23.7 259 24-319 29-308 (847)
71 PRK10550 tRNA-dihydrouridine s 99.9 4.2E-24 9.1E-29 230.7 19.7 170 564-761 63-239 (312)
72 COG0042 tRNA-dihydrouridine sy 99.9 3E-24 6.5E-29 232.7 18.3 168 564-759 67-241 (323)
73 PRK06912 acoL dihydrolipoamide 99.9 1.4E-23 3E-28 241.9 23.6 217 61-319 100-328 (458)
74 TIGR01423 trypano_reduc trypan 99.9 6.8E-24 1.5E-28 244.4 20.8 216 61-319 113-349 (486)
75 PRK06115 dihydrolipoamide dehy 99.9 1E-23 2.2E-28 243.3 22.2 260 21-319 22-336 (466)
76 COG3634 AhpF Alkyl hydroperoxi 99.9 1.1E-24 2.4E-29 224.6 12.1 263 24-323 233-515 (520)
77 PRK09754 phenylpropionate diox 99.9 1.3E-23 2.8E-28 237.8 21.9 291 15-355 18-333 (396)
78 PRK13748 putative mercuric red 99.9 1.2E-23 2.7E-28 248.9 22.1 215 61-319 198-426 (561)
79 TIGR02374 nitri_red_nirB nitri 99.9 1.3E-23 2.9E-28 255.3 21.6 256 24-319 23-299 (785)
80 TIGR00737 nifR3_yhdG putative 99.9 1.9E-23 4.2E-28 228.5 20.2 171 564-763 63-239 (319)
81 PRK13512 coenzyme A disulfide 99.9 2.1E-23 4.5E-28 238.9 21.2 262 15-319 16-310 (438)
82 PRK05976 dihydrolipoamide dehy 99.9 6.2E-23 1.3E-27 237.5 24.9 257 23-319 25-341 (472)
83 PRK06292 dihydrolipoamide dehy 99.9 3.5E-23 7.5E-28 239.2 22.7 217 62-320 103-330 (460)
84 PRK11815 tRNA-dihydrouridine s 99.9 8.3E-24 1.8E-28 231.5 16.4 176 564-763 65-250 (333)
85 PRK14694 putative mercuric red 99.9 4.1E-23 9E-28 238.6 22.6 210 65-319 111-333 (468)
86 PRK14727 putative mercuric red 99.9 3.5E-23 7.6E-28 239.6 22.0 211 65-319 121-344 (479)
87 COG1252 Ndh NADH dehydrogenase 99.9 5.7E-23 1.2E-27 225.8 22.1 273 25-325 28-334 (405)
88 TIGR01350 lipoamide_DH dihydro 99.9 6E-23 1.3E-27 237.3 23.5 220 61-319 99-330 (461)
89 PRK06327 dihydrolipoamide dehy 99.9 4E-23 8.6E-28 239.1 22.0 222 60-319 109-345 (475)
90 PTZ00058 glutathione reductase 99.9 6.7E-23 1.4E-27 238.6 23.4 193 83-319 197-430 (561)
91 TIGR01438 TGR thioredoxin and 99.9 4.8E-23 1E-27 237.9 21.6 220 59-319 108-342 (484)
92 KOG2335|consensus 99.9 2.3E-23 5E-28 218.7 16.3 167 563-756 73-243 (358)
93 PRK04965 NADH:flavorubredoxin 99.9 2.3E-22 4.9E-27 226.3 23.1 264 16-319 18-300 (377)
94 PTZ00153 lipoamide dehydrogena 99.9 2.2E-22 4.7E-27 237.2 22.1 226 66-319 249-493 (659)
95 PTZ00318 NADH dehydrogenase-li 99.9 5.1E-22 1.1E-26 226.5 22.5 270 25-325 33-350 (424)
96 cd02911 arch_FMN Archeal FMN-b 99.9 2.7E-22 5.8E-27 208.1 17.8 158 564-760 73-232 (233)
97 TIGR03169 Nterm_to_SelD pyridi 99.9 8.1E-22 1.8E-26 220.9 22.6 264 23-325 23-313 (364)
98 PTZ00052 thioredoxin reductase 99.9 8.4E-22 1.8E-26 228.7 23.4 211 64-319 115-339 (499)
99 PF01207 Dus: Dihydrouridine s 99.9 5E-23 1.1E-27 223.2 11.4 166 564-758 54-225 (309)
100 KOG1336|consensus 99.9 1.3E-21 2.8E-26 212.7 18.9 259 55-357 131-410 (478)
101 cd02811 IDI-2_FMN Isopentenyl- 99.9 7.1E-21 1.5E-25 207.8 24.2 199 564-778 113-325 (326)
102 KOG0405|consensus 99.9 1.7E-21 3.6E-26 201.5 17.0 219 61-320 120-349 (478)
103 cd02801 DUS_like_FMN Dihydrour 99.9 7.5E-21 1.6E-25 199.2 19.0 170 564-762 55-229 (231)
104 KOG1335|consensus 99.9 3.8E-21 8.3E-26 201.4 16.1 197 87-319 172-375 (506)
105 PRK05437 isopentenyl pyrophosp 99.8 4.5E-20 9.7E-25 203.0 20.0 216 564-802 121-351 (352)
106 TIGR02151 IPP_isom_2 isopenten 99.8 9.6E-20 2.1E-24 199.5 22.4 201 564-780 114-327 (333)
107 TIGR01372 soxA sarcosine oxida 99.8 1.3E-19 2.8E-24 225.5 25.1 262 24-324 185-473 (985)
108 COG1251 NirB NAD(P)H-nitrite r 99.8 3E-20 6.5E-25 210.5 14.8 234 48-320 56-305 (793)
109 PTZ00188 adrenodoxin reductase 99.8 9.9E-18 2.2E-22 187.8 24.8 286 24-324 62-441 (506)
110 cd02809 alpha_hydroxyacid_oxid 99.8 5.4E-18 1.2E-22 183.7 19.0 173 564-778 116-298 (299)
111 PRK09853 putative selenate red 99.7 3.4E-18 7.4E-23 206.3 11.7 314 339-767 35-398 (1019)
112 TIGR03315 Se_ygfK putative sel 99.7 4.6E-18 1E-22 206.3 12.3 311 339-767 34-396 (1012)
113 KOG4716|consensus 99.7 1.1E-17 2.5E-22 172.5 10.9 196 87-319 160-363 (503)
114 KOG1800|consensus 99.7 1.6E-16 3.4E-21 167.1 17.3 282 23-323 43-407 (468)
115 cd04737 LOX_like_FMN L-Lactate 99.7 1.1E-15 2.4E-20 166.6 19.7 185 564-779 125-348 (351)
116 KOG2495|consensus 99.7 3.4E-16 7.4E-21 167.4 13.6 210 86-324 156-398 (491)
117 PRK13523 NADPH dehydrogenase N 99.7 6.6E-16 1.4E-20 169.1 15.9 165 576-765 141-324 (337)
118 cd02803 OYE_like_FMN_family Ol 99.7 1.2E-15 2.6E-20 168.4 17.6 166 576-761 140-326 (327)
119 cd02922 FCB2_FMN Flavocytochro 99.7 1.9E-15 4E-20 165.1 18.5 184 564-778 118-342 (344)
120 PLN02535 glycolate oxidase 99.6 7.6E-15 1.7E-19 160.2 20.9 185 564-779 124-350 (364)
121 TIGR02708 L_lactate_ox L-lacta 99.6 1.4E-14 2.9E-19 158.2 22.1 187 564-780 133-356 (367)
122 cd02932 OYE_YqiM_FMN Old yello 99.6 3.4E-15 7.4E-20 164.8 16.8 162 576-761 153-335 (336)
123 KOG2333|consensus 99.6 5.3E-15 1.2E-19 158.7 16.6 171 564-762 320-501 (614)
124 PLN02172 flavin-containing mon 99.6 3.2E-15 6.9E-20 171.2 15.4 219 51-316 111-346 (461)
125 cd02933 OYE_like_FMN Old yello 99.6 1E-14 2.2E-19 160.1 17.4 157 576-762 151-330 (338)
126 cd04733 OYE_like_2_FMN Old yel 99.6 1.3E-14 2.8E-19 160.3 17.0 171 575-762 147-338 (338)
127 cd02931 ER_like_FMN Enoate red 99.6 2.1E-14 4.5E-19 160.5 17.9 168 576-763 149-352 (382)
128 cd04734 OYE_like_3_FMN Old yel 99.6 2.5E-14 5.3E-19 157.7 17.8 171 576-763 140-332 (343)
129 PLN02979 glycolate oxidase 99.6 8.4E-14 1.8E-18 150.2 21.0 186 564-779 121-350 (366)
130 COG0446 HcaD Uncharacterized N 99.6 6.5E-14 1.4E-18 159.2 20.7 265 16-319 14-308 (415)
131 cd04735 OYE_like_4_FMN Old yel 99.6 1.7E-14 3.6E-19 159.9 14.9 164 576-764 143-331 (353)
132 PLN02493 probable peroxisomal 99.6 8.5E-14 1.8E-18 151.7 20.0 186 564-779 122-351 (367)
133 PRK11197 lldD L-lactate dehydr 99.6 1.1E-13 2.4E-18 151.7 20.0 186 564-779 122-372 (381)
134 cd04747 OYE_like_5_FMN Old yel 99.6 4.7E-14 1E-18 155.3 16.8 161 576-764 143-346 (361)
135 cd04736 MDH_FMN Mandelate dehy 99.6 2.1E-13 4.5E-18 148.6 21.2 183 564-778 116-360 (361)
136 cd03332 LMO_FMN L-Lactate 2-mo 99.6 1.7E-13 3.6E-18 150.7 20.6 185 564-778 138-379 (383)
137 COG1902 NemA NADH:flavin oxido 99.5 1.4E-13 3E-18 150.9 16.3 167 576-765 148-337 (363)
138 cd02930 DCR_FMN 2,4-dienoyl-Co 99.5 1.1E-13 2.4E-18 153.7 15.7 167 576-763 136-323 (353)
139 PF01070 FMN_dh: FMN-dependent 99.5 8.5E-14 1.8E-18 153.2 13.6 186 564-779 110-352 (356)
140 cd02929 TMADH_HD_FMN Trimethyl 99.5 2.7E-13 5.9E-18 150.9 17.6 165 576-763 149-336 (370)
141 PRK05458 guanosine 5'-monophos 99.5 1.7E-12 3.7E-17 139.8 21.9 176 566-779 86-310 (326)
142 KOG1346|consensus 99.5 8.2E-14 1.8E-18 147.6 10.3 222 62-320 268-518 (659)
143 KOG0538|consensus 99.5 5E-13 1.1E-17 136.6 15.4 173 576-778 133-349 (363)
144 PRK08255 salicylyl-CoA 5-hydro 99.4 1.5E-12 3.2E-17 158.8 18.7 164 576-763 550-734 (765)
145 PRK10605 N-ethylmaleimide redu 99.4 3.8E-12 8.2E-17 141.1 17.4 157 576-763 158-338 (362)
146 PF00724 Oxidored_FMN: NADH:fl 99.4 6.4E-13 1.4E-17 146.8 11.0 170 576-763 148-338 (341)
147 PF00743 FMO-like: Flavin-bind 99.4 2.2E-12 4.8E-17 149.9 15.2 139 24-182 23-217 (531)
148 PRK13125 trpA tryptophan synth 99.4 7.7E-12 1.7E-16 131.6 15.8 182 564-750 4-219 (244)
149 KOG2334|consensus 99.4 8.6E-12 1.9E-16 132.9 15.8 165 564-757 82-253 (477)
150 cd02808 GltS_FMN Glutamate syn 99.3 2.8E-11 6.1E-16 135.6 18.9 148 615-778 196-385 (392)
151 TIGR01306 GMP_reduct_2 guanosi 99.3 7.7E-11 1.7E-15 126.5 21.2 146 565-749 84-231 (321)
152 PLN02411 12-oxophytodienoate r 99.3 2.3E-11 5E-16 136.1 16.9 166 576-762 164-358 (391)
153 PRK04180 pyridoxal biosynthesi 99.3 2.8E-11 6.1E-16 125.3 12.6 176 580-764 27-255 (293)
154 PRK05286 dihydroorotate dehydr 99.2 1.4E-10 2.9E-15 128.2 16.2 254 346-663 47-317 (344)
155 cd00381 IMPDH IMPDH: The catal 99.2 8.1E-10 1.7E-14 120.8 21.4 138 573-749 90-230 (325)
156 COG1304 idi Isopentenyl diphos 99.2 2E-10 4.3E-15 125.6 13.8 136 615-780 201-346 (360)
157 cd04722 TIM_phosphate_binding 99.2 7E-10 1.5E-14 112.5 17.1 142 564-746 58-200 (200)
158 PRK08649 inosine 5-monophospha 99.1 2.5E-09 5.4E-14 118.0 19.1 172 575-779 139-362 (368)
159 TIGR01304 IMP_DH_rel_2 IMP deh 99.1 8.4E-09 1.8E-13 113.4 20.8 143 575-749 140-288 (369)
160 COG1148 HdrA Heterodisulfide r 99.1 8.4E-09 1.8E-13 112.6 19.8 217 88-324 300-546 (622)
161 PF07992 Pyr_redox_2: Pyridine 99.0 4.5E-10 9.8E-15 114.6 8.2 139 149-300 1-199 (201)
162 PF13738 Pyr_redox_3: Pyridine 99.0 1.7E-10 3.7E-15 118.0 4.3 139 22-181 17-200 (203)
163 TIGR01036 pyrD_sub2 dihydrooro 99.0 1.9E-09 4.2E-14 118.2 12.7 80 348-437 46-125 (335)
164 TIGR03151 enACPred_II putative 99.0 5.5E-09 1.2E-13 113.4 15.9 134 564-751 63-196 (307)
165 KOG1799|consensus 99.0 3.8E-11 8.2E-16 124.3 -1.4 150 673-823 3-153 (471)
166 COG0167 PyrD Dihydroorotate de 99.0 2.8E-09 6E-14 113.7 12.2 250 348-663 2-269 (310)
167 TIGR01305 GMP_reduct_1 guanosi 99.0 8.2E-08 1.8E-12 102.2 22.6 145 566-749 98-245 (343)
168 cd04724 Tryptophan_synthase_al 99.0 2.4E-08 5.1E-13 105.0 17.7 179 566-749 2-219 (242)
169 KOG1399|consensus 99.0 1.5E-09 3.2E-14 122.7 9.3 136 24-179 28-217 (448)
170 PRK06843 inosine 5-monophospha 99.0 1.8E-08 3.9E-13 111.5 17.5 145 566-749 144-289 (404)
171 PF13434 K_oxygenase: L-lysine 98.9 5E-09 1.1E-13 115.7 12.3 144 85-256 144-340 (341)
172 COG3486 IucD Lysine/ornithine 98.9 6.5E-08 1.4E-12 104.5 19.7 183 86-298 143-386 (436)
173 PTZ00314 inosine-5'-monophosph 98.9 3.4E-08 7.4E-13 113.8 18.2 140 573-749 237-377 (495)
174 PRK14024 phosphoribosyl isomer 98.9 2.8E-08 6.1E-13 104.5 16.0 132 575-751 86-228 (241)
175 PRK01033 imidazole glycerol ph 98.9 3.5E-08 7.5E-13 104.8 15.8 142 564-752 75-233 (258)
176 TIGR00262 trpA tryptophan synt 98.9 1.4E-07 3E-12 99.7 19.8 186 564-750 10-232 (256)
177 PLN02591 tryptophan synthase 98.9 2.5E-07 5.4E-12 96.8 20.5 183 565-750 3-223 (250)
178 PLN02826 dihydroorotate dehydr 98.9 1.7E-07 3.6E-12 104.9 20.5 76 347-447 73-148 (409)
179 PLN02274 inosine-5'-monophosph 98.8 7E-08 1.5E-12 111.2 17.6 140 573-749 244-384 (505)
180 cd04731 HisF The cyclase subun 98.8 1.3E-07 2.8E-12 99.8 17.5 152 564-762 72-239 (243)
181 PRK05096 guanosine 5'-monophos 98.8 1.6E-07 3.5E-12 99.9 17.9 146 566-749 99-246 (346)
182 cd00331 IGPS Indole-3-glycerol 98.8 4.5E-08 9.9E-13 101.4 13.3 169 564-751 11-207 (217)
183 PRK00507 deoxyribose-phosphate 98.8 1E-07 2.2E-12 98.1 15.3 123 583-747 80-210 (221)
184 cd04730 NPD_like 2-Nitropropan 98.8 1.5E-07 3.3E-12 98.8 16.9 137 564-751 54-191 (236)
185 TIGR01302 IMP_dehydrog inosine 98.8 1E-07 2.3E-12 109.2 16.8 140 573-749 220-360 (450)
186 CHL00200 trpA tryptophan synth 98.8 5.7E-07 1.2E-11 95.0 20.0 185 564-749 15-235 (263)
187 PRK13585 1-(5-phosphoribosyl)- 98.8 1.9E-07 4.2E-12 98.4 16.5 151 564-762 77-238 (241)
188 PF03060 NMO: Nitronate monoox 98.8 1.1E-07 2.3E-12 104.9 14.6 123 579-750 102-224 (330)
189 PF00070 Pyr_redox: Pyridine n 98.7 5.4E-08 1.2E-12 83.9 8.8 74 149-225 1-79 (80)
190 PRK07259 dihydroorotate dehydr 98.7 3.9E-07 8.5E-12 99.4 17.3 172 463-744 8-188 (301)
191 TIGR03572 WbuZ glycosyl amidat 98.7 3.6E-07 7.9E-12 95.7 16.3 139 564-749 75-231 (232)
192 PRK00748 1-(5-phosphoribosyl)- 98.7 2.2E-07 4.7E-12 97.5 14.4 142 564-751 75-226 (233)
193 PRK01130 N-acetylmannosamine-6 98.7 4.3E-07 9.3E-12 94.4 16.3 139 583-763 81-219 (221)
194 COG2072 TrkA Predicted flavopr 98.7 6.6E-08 1.4E-12 110.7 11.0 143 24-186 30-213 (443)
195 TIGR00007 phosphoribosylformim 98.7 3.8E-07 8.1E-12 95.5 15.4 142 564-752 73-225 (230)
196 TIGR01304 IMP_DH_rel_2 IMP deh 98.7 3E-07 6.4E-12 101.4 15.0 156 564-771 86-252 (369)
197 cd04732 HisA HisA. Phosphorib 98.7 3.2E-07 6.9E-12 96.3 14.4 141 564-751 74-225 (234)
198 cd04739 DHOD_like Dihydroorota 98.7 5.3E-07 1.1E-11 99.0 16.6 177 463-748 8-198 (325)
199 cd04729 NanE N-acetylmannosami 98.7 5.4E-07 1.2E-11 93.5 15.8 128 582-750 84-211 (219)
200 PF04131 NanE: Putative N-acet 98.6 7.1E-07 1.5E-11 87.4 14.9 130 586-763 60-190 (192)
201 PRK02083 imidazole glycerol ph 98.6 1E-06 2.2E-11 93.6 17.6 142 564-751 75-233 (253)
202 PRK13111 trpA tryptophan synth 98.6 2E-06 4.3E-11 90.8 19.5 183 564-749 12-232 (258)
203 cd04727 pdxS PdxS is a subunit 98.6 1E-06 2.3E-11 91.5 16.8 171 564-765 66-247 (283)
204 COG2070 Dioxygenases related t 98.6 1.2E-07 2.6E-12 103.7 10.3 99 622-750 118-218 (336)
205 PRK05567 inosine 5'-monophosph 98.6 9.4E-07 2E-11 102.4 18.2 138 573-749 224-364 (486)
206 TIGR01303 IMP_DH_rel_1 IMP deh 98.6 5.9E-07 1.3E-11 102.7 15.5 137 577-749 224-361 (475)
207 TIGR00343 pyridoxal 5'-phospha 98.6 1.5E-06 3.3E-11 90.3 17.0 176 581-765 21-250 (287)
208 PRK07107 inosine 5-monophospha 98.6 4.7E-07 1E-11 104.3 14.4 138 576-749 240-385 (502)
209 TIGR01769 GGGP geranylgeranylg 98.6 1.6E-06 3.5E-11 87.7 16.5 152 577-745 11-205 (205)
210 COG0159 TrpA Tryptophan syntha 98.6 5.5E-06 1.2E-10 86.1 20.7 182 564-749 17-237 (265)
211 PF00290 Trp_syntA: Tryptophan 98.6 1.1E-06 2.3E-11 92.3 15.4 185 564-750 10-231 (259)
212 cd04740 DHOD_1B_like Dihydroor 98.6 1.9E-06 4E-11 93.9 17.8 173 463-745 6-186 (296)
213 PF00478 IMPDH: IMP dehydrogen 98.6 1.5E-06 3.2E-11 94.6 16.6 146 565-749 98-244 (352)
214 TIGR00735 hisF imidazoleglycer 98.6 1.6E-06 3.4E-11 92.1 16.2 158 564-772 75-251 (254)
215 cd04743 NPD_PKS 2-Nitropropane 98.5 1.3E-06 2.9E-11 93.9 15.4 140 563-751 55-208 (320)
216 cd02810 DHOD_DHPD_FMN Dihydroo 98.5 2E-06 4.4E-11 93.3 17.0 176 463-747 5-198 (289)
217 cd00945 Aldolase_Class_I Class 98.5 2.5E-06 5.5E-11 86.8 16.7 140 564-745 49-201 (201)
218 KOG3851|consensus 98.5 4.4E-07 9.6E-12 94.4 10.4 226 78-325 123-363 (446)
219 cd04741 DHOD_1A_like Dihydroor 98.5 3E-06 6.6E-11 91.8 17.1 69 463-542 5-77 (294)
220 PRK02506 dihydroorotate dehydr 98.5 1.5E-06 3.2E-11 94.8 13.9 67 463-540 8-78 (310)
221 PF01645 Glu_synthase: Conserv 98.5 1.1E-06 2.3E-11 96.4 12.0 119 615-749 185-307 (368)
222 PRK00278 trpC indole-3-glycero 98.4 5.8E-06 1.3E-10 87.8 16.6 170 564-751 50-246 (260)
223 cd04731 HisF The cyclase subun 98.4 1.4E-06 3E-11 92.0 11.5 91 644-763 27-117 (243)
224 COG0214 SNZ1 Pyridoxine biosyn 98.4 2.5E-06 5.4E-11 84.7 12.2 162 581-751 31-243 (296)
225 TIGR01768 GGGP-family geranylg 98.4 7.8E-06 1.7E-10 83.5 16.3 164 578-759 15-221 (223)
226 cd04728 ThiG Thiazole synthase 98.4 1.7E-05 3.7E-10 81.1 18.5 154 569-764 68-225 (248)
227 PRK05329 anaerobic glycerol-3- 98.4 2.1E-06 4.5E-11 97.3 13.3 154 150-321 218-419 (422)
228 cd02940 DHPD_FMN Dihydropyrimi 98.4 1E-05 2.2E-10 88.1 17.8 182 463-746 8-201 (299)
229 PF04481 DUF561: Protein of un 98.4 9.6E-06 2.1E-10 80.2 15.5 154 563-750 61-219 (242)
230 TIGR00735 hisF imidazoleglycer 98.4 2E-06 4.3E-11 91.3 11.4 91 644-763 30-120 (254)
231 COG3010 NanE Putative N-acetyl 98.3 2E-05 4.3E-10 77.4 15.9 147 574-749 30-213 (229)
232 PRK02083 imidazole glycerol ph 98.3 3.5E-06 7.6E-11 89.5 11.4 91 644-763 30-120 (253)
233 KOG2755|consensus 98.3 1.5E-06 3.2E-11 88.4 7.9 55 242-299 267-321 (334)
234 PRK00208 thiG thiazole synthas 98.3 4.7E-05 1E-09 78.0 18.6 154 569-764 68-225 (250)
235 PF01180 DHO_dh: Dihydroorotat 98.3 1.4E-06 3.1E-11 94.7 8.2 72 463-543 8-82 (295)
236 PRK07807 inosine 5-monophospha 98.3 9.8E-06 2.1E-10 93.0 14.7 134 577-749 226-363 (479)
237 PRK07565 dihydroorotate dehydr 98.2 1.7E-05 3.6E-10 87.7 15.0 111 617-748 86-200 (334)
238 TIGR03128 RuMP_HxlA 3-hexulose 98.2 5E-05 1.1E-09 78.0 17.3 149 565-764 54-203 (206)
239 PRK04176 ribulose-1,5-biphosph 98.2 2.1E-05 4.6E-10 83.6 14.6 169 149-324 27-256 (257)
240 COG0069 GltB Glutamate synthas 98.2 1.3E-05 2.8E-10 89.9 12.9 179 573-780 256-476 (485)
241 KOG0134|consensus 98.2 2E-05 4.4E-10 85.8 13.8 172 577-764 174-366 (400)
242 cd04742 NPD_FabD 2-Nitropropan 98.2 3.3E-05 7.2E-10 86.2 15.7 35 716-750 219-253 (418)
243 PRK04169 geranylgeranylglycery 98.2 7.1E-05 1.5E-09 77.3 17.0 155 584-759 26-227 (232)
244 PRK08649 inosine 5-monophospha 98.2 1.4E-05 3.1E-10 88.4 12.5 103 615-747 115-217 (368)
245 PRK11750 gltB glutamate syntha 98.2 1.1E-05 2.3E-10 100.8 12.5 151 615-781 978-1169(1485)
246 TIGR01163 rpe ribulose-phospha 98.2 2.1E-05 4.6E-10 80.9 12.9 165 568-750 3-198 (210)
247 PTZ00170 D-ribulose-5-phosphat 98.2 7.9E-05 1.7E-09 77.6 17.1 167 566-750 9-206 (228)
248 PRK07695 transcriptional regul 98.2 3.8E-05 8.3E-10 78.6 14.5 77 649-751 107-183 (201)
249 KOG2550|consensus 98.1 0.00025 5.5E-09 76.4 20.7 139 575-749 248-387 (503)
250 TIGR01037 pyrD_sub1_fam dihydr 98.1 6.8E-05 1.5E-09 81.8 17.0 174 463-746 7-190 (300)
251 TIGR02814 pfaD_fam PfaD family 98.1 3.2E-05 7E-10 86.8 14.5 35 716-750 224-258 (444)
252 cd00452 KDPG_aldolase KDPG and 98.1 2.4E-05 5.2E-10 79.3 11.7 145 564-749 4-175 (190)
253 cd02812 PcrB_like PcrB_like pr 98.1 0.00011 2.3E-09 75.2 16.3 63 694-760 156-218 (219)
254 PLN02334 ribulose-phosphate 3- 98.1 0.00022 4.8E-09 74.5 18.8 140 564-750 66-207 (229)
255 TIGR01182 eda Entner-Doudoroff 98.1 0.00011 2.4E-09 74.5 15.5 163 564-750 8-181 (204)
256 PRK09140 2-dehydro-3-deoxy-6-p 98.1 7.7E-05 1.7E-09 76.3 14.3 166 564-751 10-185 (206)
257 PRK08883 ribulose-phosphate 3- 98.1 0.00015 3.1E-09 75.0 16.4 178 567-767 3-215 (220)
258 TIGR00292 thiazole biosynthesi 98.0 0.00011 2.3E-09 77.9 15.7 167 149-322 23-253 (254)
259 KOG1606|consensus 98.0 4.9E-05 1.1E-09 74.4 11.4 161 582-751 33-244 (296)
260 COG1646 Predicted phosphate-bi 98.0 0.00019 4.2E-09 72.4 15.9 164 577-764 28-238 (240)
261 PF05690 ThiG: Thiazole biosyn 98.0 0.00058 1.3E-08 69.2 19.3 146 565-751 64-210 (247)
262 PRK06552 keto-hydroxyglutarate 98.0 0.00063 1.4E-08 69.8 19.8 165 564-750 13-188 (213)
263 COG0107 HisF Imidazoleglycerol 98.0 3.4E-05 7.4E-10 77.2 10.1 93 642-763 28-120 (256)
264 PRK13587 1-(5-phosphoribosyl)- 98.0 0.00013 2.8E-09 76.3 14.7 121 587-750 95-226 (234)
265 CHL00162 thiG thiamin biosynth 98.0 0.00048 1E-08 70.5 18.0 137 573-751 80-224 (267)
266 cd04738 DHOD_2_like Dihydrooro 98.0 6.5E-06 1.4E-10 90.6 4.9 70 463-541 45-117 (327)
267 KOG1436|consensus 98.0 0.00014 3.1E-09 75.7 14.1 70 346-425 82-151 (398)
268 TIGR00126 deoC deoxyribose-pho 98.0 0.00014 3E-09 74.3 14.1 128 579-746 73-205 (211)
269 cd00429 RPE Ribulose-5-phospha 97.9 0.00013 2.8E-09 75.2 13.8 171 566-751 2-200 (211)
270 cd04732 HisA HisA. Phosphorib 97.9 6.2E-05 1.3E-09 79.0 11.6 92 643-763 28-119 (234)
271 COG0106 HisA Phosphoribosylfor 97.9 0.00023 4.9E-09 72.9 14.8 145 565-753 75-229 (241)
272 COG0274 DeoC Deoxyribose-phosp 97.9 0.00011 2.4E-09 74.0 11.4 128 579-746 80-213 (228)
273 COG1635 THI4 Ribulose 1,5-bisp 97.9 0.00015 3.2E-09 72.7 11.8 167 150-323 33-260 (262)
274 PRK07226 fructose-bisphosphate 97.9 0.00046 1E-08 73.8 16.5 140 578-767 94-251 (267)
275 PRK08318 dihydropyrimidine deh 97.8 0.00043 9.3E-09 79.2 17.1 177 463-744 10-199 (420)
276 cd00958 DhnA Class I fructose- 97.8 0.00055 1.2E-08 71.8 16.5 137 576-764 75-231 (235)
277 COG0107 HisF Imidazoleglycerol 97.8 0.00023 5.1E-09 71.4 12.4 159 562-772 73-251 (256)
278 PF00977 His_biosynth: Histidi 97.8 0.00017 3.7E-09 75.3 11.9 140 566-749 74-224 (229)
279 COG0036 Rpe Pentose-5-phosphat 97.8 0.00073 1.6E-08 68.3 15.7 169 564-754 4-205 (220)
280 PRK07455 keto-hydroxyglutarate 97.8 0.00032 7E-09 70.7 13.0 163 564-750 12-185 (187)
281 PRK00043 thiE thiamine-phospha 97.8 0.00094 2E-08 68.8 16.9 48 703-751 147-194 (212)
282 PRK14114 1-(5-phosphoribosyl)- 97.8 0.00075 1.6E-08 70.7 16.1 134 569-750 77-228 (241)
283 PRK06015 keto-hydroxyglutarate 97.8 0.00094 2E-08 67.5 16.2 162 564-749 4-176 (201)
284 cd04723 HisA_HisF Phosphoribos 97.8 0.00041 8.9E-09 72.6 13.9 120 588-751 98-224 (233)
285 cd00959 DeoC 2-deoxyribose-5-p 97.8 0.00055 1.2E-08 70.1 14.5 126 579-743 71-201 (203)
286 PRK08745 ribulose-phosphate 3- 97.8 0.003 6.4E-08 65.3 19.8 181 566-766 6-218 (223)
287 PRK14024 phosphoribosyl isomer 97.7 0.00021 4.5E-09 75.3 11.5 91 644-764 32-122 (241)
288 PRK00748 1-(5-phosphoribosyl)- 97.7 0.00022 4.8E-09 74.7 11.6 91 644-763 30-120 (233)
289 PRK07114 keto-hydroxyglutarate 97.7 0.00074 1.6E-08 69.5 15.0 167 564-749 15-192 (222)
290 PF00834 Ribul_P_3_epim: Ribul 97.7 0.00056 1.2E-08 69.6 13.6 167 566-751 2-200 (201)
291 TIGR00259 thylakoid_BtpA membr 97.7 0.0014 3E-08 68.7 16.2 148 564-752 80-234 (257)
292 PRK05581 ribulose-phosphate 3- 97.7 0.00091 2E-08 69.4 14.8 175 566-755 6-207 (220)
293 PRK07028 bifunctional hexulose 97.7 0.001 2.3E-08 76.2 16.5 123 582-751 73-196 (430)
294 cd04726 KGPDC_HPS 3-Keto-L-gul 97.7 0.0032 6.9E-08 64.4 18.4 138 564-751 54-192 (202)
295 TIGR01949 AroFGH_arch predicte 97.6 0.0015 3.2E-08 69.6 16.3 137 579-765 92-245 (258)
296 PRK05718 keto-hydroxyglutarate 97.6 0.00059 1.3E-08 69.9 12.6 146 564-749 15-187 (212)
297 PF01791 DeoC: DeoC/LacD famil 97.6 0.0004 8.6E-09 73.0 11.6 149 564-750 57-235 (236)
298 TIGR03572 WbuZ glycosyl amidat 97.6 0.00047 1E-08 72.2 12.0 89 645-762 31-119 (232)
299 cd00564 TMP_TenI Thiamine mono 97.6 0.0016 3.5E-08 65.9 15.5 50 700-751 135-184 (196)
300 COG2022 ThiG Uncharacterized e 97.6 0.0071 1.5E-07 60.9 19.0 136 574-751 80-217 (262)
301 PRK13585 1-(5-phosphoribosyl)- 97.6 0.0004 8.8E-09 73.2 11.3 91 644-763 32-122 (241)
302 TIGR01919 hisA-trpF 1-(5-phosp 97.6 0.0014 3.1E-08 68.8 15.2 137 567-750 76-230 (243)
303 PRK11840 bifunctional sulfur c 97.6 0.0044 9.5E-08 66.5 18.7 138 573-751 146-284 (326)
304 PRK08005 epimerase; Validated 97.6 0.0028 6.2E-08 64.7 16.7 166 566-750 3-196 (210)
305 TIGR01292 TRX_reduct thioredox 97.6 0.00041 8.8E-09 75.2 11.4 91 149-257 2-112 (300)
306 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00043 9.4E-09 72.4 10.7 91 644-763 31-122 (234)
307 PRK04302 triosephosphate isome 97.6 0.0028 6.2E-08 65.9 16.7 129 583-750 78-207 (223)
308 COG2081 Predicted flavoprotein 97.5 0.00058 1.3E-08 74.7 11.2 31 150-181 6-36 (408)
309 PLN02446 (5-phosphoribosyl)-5- 97.5 0.0027 5.8E-08 66.7 15.6 147 565-752 83-246 (262)
310 PF01081 Aldolase: KDPG and KH 97.5 0.00037 8E-09 70.2 8.7 147 564-750 8-181 (196)
311 TIGR02320 PEP_mutase phosphoen 97.5 0.0048 1E-07 66.2 17.6 169 563-767 78-259 (285)
312 PF03437 BtpA: BtpA family; I 97.5 0.004 8.8E-08 65.2 16.4 147 564-752 81-234 (254)
313 PLN02617 imidazole glycerol ph 97.5 0.0031 6.8E-08 73.4 17.2 156 580-772 337-534 (538)
314 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00077 1.7E-08 70.2 10.9 88 645-763 31-118 (228)
315 PRK01033 imidazole glycerol ph 97.5 0.00096 2.1E-08 71.0 11.8 91 644-763 30-120 (258)
316 PRK13307 bifunctional formalde 97.4 0.0068 1.5E-07 67.7 18.5 151 564-767 227-378 (391)
317 PRK09722 allulose-6-phosphate 97.4 0.0096 2.1E-07 61.7 18.4 154 564-767 60-219 (229)
318 PRK13586 1-(5-phosphoribosyl)- 97.4 0.0026 5.7E-08 66.3 14.4 136 568-749 76-222 (232)
319 PF00977 His_biosynth: Histidi 97.4 0.0004 8.7E-09 72.5 8.1 92 643-763 28-119 (229)
320 cd03319 L-Ala-DL-Glu_epimerase 97.4 0.0082 1.8E-07 66.0 18.8 144 564-759 124-271 (316)
321 PF03486 HI0933_like: HI0933-l 97.4 0.00053 1.1E-08 77.6 9.6 92 149-256 2-165 (409)
322 TIGR00007 phosphoribosylformim 97.4 0.0013 2.8E-08 68.9 11.9 91 644-763 28-118 (230)
323 PLN02661 Putative thiazole syn 97.4 0.002 4.3E-08 70.7 13.6 171 149-323 94-328 (357)
324 TIGR00693 thiE thiamine-phosph 97.4 0.0049 1.1E-07 62.7 15.8 48 703-751 139-186 (196)
325 PLN02617 imidazole glycerol ph 97.4 0.00079 1.7E-08 78.3 10.8 96 643-763 266-383 (538)
326 PRK14114 1-(5-phosphoribosyl)- 97.4 0.0011 2.5E-08 69.4 10.7 87 643-759 29-115 (241)
327 PRK05283 deoxyribose-phosphate 97.4 0.0024 5.1E-08 66.9 12.8 126 579-741 86-220 (257)
328 PRK06512 thiamine-phosphate py 97.4 0.0057 1.2E-07 63.3 15.6 50 700-751 149-198 (221)
329 TIGR00734 hisAF_rel hisA/hisF 97.3 0.001 2.3E-08 68.9 10.0 133 568-750 80-218 (221)
330 TIGR02129 hisA_euk phosphoribo 97.3 0.0012 2.7E-08 68.8 10.2 84 645-763 38-125 (253)
331 PRK04128 1-(5-phosphoribosyl)- 97.3 0.005 1.1E-07 64.2 14.6 131 564-751 74-217 (228)
332 PRK09754 phenylpropionate diox 97.3 0.0011 2.3E-08 75.4 10.3 92 148-257 4-112 (396)
333 COG0352 ThiE Thiamine monophos 97.3 0.013 2.7E-07 59.9 16.5 63 700-764 143-207 (211)
334 PRK08091 ribulose-phosphate 3- 97.3 0.018 3.9E-07 59.5 17.8 152 564-765 69-225 (228)
335 PRK13957 indole-3-glycerol-pho 97.2 0.014 3E-07 61.0 16.8 159 578-755 62-239 (247)
336 cd04723 HisA_HisF Phosphoribos 97.2 0.0021 4.6E-08 67.3 10.6 89 644-763 35-123 (233)
337 PRK14057 epimerase; Provisiona 97.2 0.013 2.9E-07 61.2 16.3 155 564-768 76-242 (254)
338 PF00218 IGPS: Indole-3-glycer 97.2 0.0085 1.8E-07 63.0 14.9 158 577-756 68-248 (254)
339 PLN02446 (5-phosphoribosyl)-5- 97.2 0.0022 4.8E-08 67.3 10.2 87 644-763 43-132 (262)
340 PRK09564 coenzyme A disulfide 97.2 0.0016 3.5E-08 75.2 10.2 96 149-257 2-115 (444)
341 cd00405 PRAI Phosphoribosylant 97.1 0.0096 2.1E-07 61.0 14.4 125 574-751 60-187 (203)
342 PF00478 IMPDH: IMP dehydrogen 97.1 0.0093 2E-07 65.4 14.5 131 564-745 38-177 (352)
343 PRK13586 1-(5-phosphoribosyl)- 97.1 0.0046 1E-07 64.5 11.6 90 644-763 30-119 (232)
344 PF02581 TMP-TENI: Thiamine mo 97.1 0.0077 1.7E-07 60.4 12.7 47 700-748 134-180 (180)
345 PRK13512 coenzyme A disulfide 97.1 0.0041 9E-08 71.6 12.2 96 149-257 3-117 (438)
346 COG0134 TrpC Indole-3-glycerol 97.0 0.0065 1.4E-07 63.2 12.0 152 580-755 69-245 (254)
347 KOG3111|consensus 97.0 0.018 4E-07 56.3 14.2 173 574-764 14-218 (224)
348 PF01134 GIDA: Glucose inhibit 97.0 0.0025 5.5E-08 71.0 9.6 89 150-255 2-150 (392)
349 PRK12779 putative bifunctional 97.0 0.00098 2.1E-08 83.2 7.0 85 147-256 306-403 (944)
350 PRK07236 hypothetical protein; 97.0 0.005 1.1E-07 69.7 11.9 33 148-181 7-39 (386)
351 cd04727 pdxS PdxS is a subunit 97.0 0.028 6E-07 59.1 16.1 122 581-748 19-140 (283)
352 PRK02615 thiamine-phosphate py 97.0 0.021 4.5E-07 62.9 15.9 49 700-750 279-327 (347)
353 PRK06806 fructose-bisphosphate 97.0 0.043 9.3E-07 58.9 17.9 156 564-767 75-245 (281)
354 TIGR03140 AhpF alkyl hydropero 96.9 0.005 1.1E-07 72.5 11.7 92 149-257 214-323 (515)
355 COG0106 HisA Phosphoribosylfor 96.9 0.0063 1.4E-07 62.5 10.6 91 644-763 31-121 (241)
356 PF01946 Thi4: Thi4 family; PD 96.9 0.0068 1.5E-07 61.4 10.5 104 150-258 20-166 (230)
357 PLN02460 indole-3-glycerol-pho 96.9 0.021 4.6E-07 62.0 15.0 152 578-755 140-326 (338)
358 PRK15317 alkyl hydroperoxide r 96.9 0.006 1.3E-07 71.9 12.0 92 149-257 213-322 (517)
359 cd03316 MR_like Mandelate race 96.9 0.026 5.7E-07 63.1 16.5 142 564-749 127-274 (357)
360 PF01494 FAD_binding_3: FAD bi 96.9 0.0048 1.1E-07 68.2 10.5 32 149-181 3-34 (356)
361 COG0269 SgbH 3-hexulose-6-phos 96.9 0.095 2.1E-06 53.0 18.2 154 564-764 57-213 (217)
362 COG0434 SgcQ Predicted TIM-bar 96.9 0.026 5.6E-07 57.3 14.0 147 564-752 86-239 (263)
363 PRK12770 putative glutamate sy 96.8 0.0017 3.6E-08 72.6 6.2 99 144-256 15-129 (352)
364 TIGR02032 GG-red-SF geranylger 96.8 0.0088 1.9E-07 64.4 11.7 31 150-181 3-33 (295)
365 PF01884 PcrB: PcrB family; I 96.8 0.0019 4E-08 66.5 5.8 58 705-764 171-228 (230)
366 PF13738 Pyr_redox_3: Pyridine 96.8 0.0042 9.1E-08 63.2 8.4 89 151-255 1-136 (203)
367 PRK08999 hypothetical protein; 96.8 0.031 6.8E-07 61.3 15.8 47 700-748 265-311 (312)
368 COG0800 Eda 2-keto-3-deoxy-6-p 96.8 0.013 2.8E-07 59.0 11.4 164 564-750 13-186 (211)
369 PLN02172 flavin-containing mon 96.8 0.011 2.5E-07 68.2 12.5 34 147-181 10-43 (461)
370 cd00381 IMPDH IMPDH: The catal 96.8 0.021 4.5E-07 62.9 13.9 127 564-744 35-162 (325)
371 PRK04965 NADH:flavorubredoxin 96.7 0.0079 1.7E-07 67.9 10.9 91 148-257 3-111 (377)
372 PRK11749 dihydropyrimidine deh 96.7 0.0021 4.5E-08 74.5 6.3 84 147-256 140-236 (457)
373 PRK01438 murD UDP-N-acetylmura 96.7 0.0039 8.5E-08 72.7 8.6 79 148-263 17-95 (480)
374 PRK13802 bifunctional indole-3 96.7 0.043 9.2E-07 65.8 17.1 151 578-755 71-249 (695)
375 COG1252 Ndh NADH dehydrogenase 96.7 0.0056 1.2E-07 68.5 9.0 91 147-257 3-111 (405)
376 PF01266 DAO: FAD dependent ox 96.7 0.0056 1.2E-07 67.8 9.1 31 150-181 2-32 (358)
377 cd03315 MLE_like Muconate lact 96.7 0.12 2.6E-06 55.3 18.7 144 564-759 75-223 (265)
378 TIGR01317 GOGAT_sm_gam glutama 96.7 0.0024 5.2E-08 74.5 6.1 83 148-256 144-239 (485)
379 TIGR01318 gltD_gamma_fam gluta 96.7 0.0025 5.4E-08 74.0 6.1 84 148-257 142-238 (467)
380 PRK08244 hypothetical protein; 96.6 0.019 4.1E-07 67.3 13.3 32 149-181 4-35 (493)
381 PRK06184 hypothetical protein; 96.6 0.019 4.2E-07 67.4 13.4 32 149-181 5-36 (502)
382 TIGR01919 hisA-trpF 1-(5-phosp 96.6 0.016 3.4E-07 61.0 11.3 89 645-763 32-120 (243)
383 PRK06847 hypothetical protein; 96.6 0.012 2.6E-07 66.1 11.2 33 148-181 5-37 (375)
384 TIGR02129 hisA_euk phosphoribo 96.6 0.037 8.1E-07 57.9 13.6 142 567-750 78-237 (253)
385 TIGR00137 gid_trmFO tRNA:m(5)U 96.6 0.0099 2.1E-07 67.3 10.0 33 149-182 2-34 (433)
386 PRK11101 glpA sn-glycerol-3-ph 96.6 0.017 3.6E-07 68.5 12.4 32 149-181 8-39 (546)
387 TIGR03169 Nterm_to_SelD pyridi 96.5 0.0061 1.3E-07 68.4 8.2 89 149-257 1-107 (364)
388 PRK10157 putative oxidoreducta 96.5 0.016 3.5E-07 66.5 11.6 31 150-181 8-38 (428)
389 PRK12810 gltD glutamate syntha 96.5 0.0033 7.2E-08 73.1 6.0 83 148-256 144-239 (471)
390 TIGR02374 nitri_red_nirB nitri 96.5 0.0084 1.8E-07 74.1 9.7 90 150-257 1-108 (785)
391 PTZ00318 NADH dehydrogenase-li 96.5 0.0076 1.6E-07 69.2 8.8 101 147-257 10-125 (424)
392 PRK07364 2-octaprenyl-6-methox 96.5 0.014 3E-07 66.7 10.9 33 149-182 20-52 (415)
393 PRK14989 nitrite reductase sub 96.5 0.01 2.2E-07 73.6 10.2 92 148-257 4-113 (847)
394 PRK06834 hypothetical protein; 96.5 0.018 4E-07 67.2 11.8 32 149-181 5-36 (488)
395 PRK10015 oxidoreductase; Provi 96.5 0.028 6E-07 64.6 13.1 31 150-181 8-38 (429)
396 PRK06481 fumarate reductase fl 96.5 0.034 7.5E-07 65.3 14.0 31 150-181 64-94 (506)
397 PRK06185 hypothetical protein; 96.5 0.029 6.3E-07 63.8 13.1 32 149-181 8-39 (407)
398 PRK12809 putative oxidoreducta 96.4 0.0043 9.3E-08 74.9 6.3 83 148-256 311-406 (639)
399 PRK13813 orotidine 5'-phosphat 96.4 0.075 1.6E-06 54.9 14.7 129 584-767 74-212 (215)
400 PRK05096 guanosine 5'-monophos 96.4 0.048 1E-06 58.9 13.4 98 615-744 79-178 (346)
401 PF12831 FAD_oxidored: FAD dep 96.4 0.0023 5.1E-08 73.4 3.9 93 150-255 2-148 (428)
402 PRK10262 thioredoxin reductase 96.4 0.024 5.2E-07 62.4 11.7 32 148-180 7-38 (321)
403 PRK12831 putative oxidoreducta 96.4 0.0048 1E-07 71.6 6.3 84 148-255 141-238 (464)
404 PLN02463 lycopene beta cyclase 96.4 0.017 3.6E-07 66.5 10.7 31 150-181 31-61 (447)
405 TIGR01859 fruc_bis_ald_ fructo 96.4 0.28 6E-06 52.8 19.2 144 564-749 75-234 (282)
406 PRK05192 tRNA uridine 5-carbox 96.4 0.015 3.3E-07 68.4 10.1 30 150-180 7-36 (618)
407 cd00377 ICL_PEPM Members of th 96.4 0.063 1.4E-06 56.5 13.9 143 583-747 22-182 (243)
408 PRK07315 fructose-bisphosphate 96.4 0.27 5.8E-06 53.2 18.9 143 564-750 78-237 (293)
409 cd00377 ICL_PEPM Members of th 96.4 0.13 2.8E-06 54.2 16.2 149 563-749 69-230 (243)
410 COG0644 FixC Dehydrogenases (f 96.3 0.028 6E-07 63.9 12.0 31 150-181 6-36 (396)
411 PRK03512 thiamine-phosphate py 96.3 0.039 8.5E-07 56.8 11.9 86 645-756 111-196 (211)
412 PRK08243 4-hydroxybenzoate 3-m 96.3 0.029 6.3E-07 63.6 12.0 33 148-181 3-35 (392)
413 PRK12290 thiE thiamine-phospha 96.3 0.12 2.6E-06 58.1 16.0 67 700-769 340-414 (437)
414 PRK08274 tricarballylate dehyd 96.3 0.045 9.8E-07 63.6 13.5 31 150-181 7-37 (466)
415 PF04131 NanE: Putative N-acet 96.3 0.071 1.5E-06 52.8 12.5 113 580-749 2-121 (192)
416 TIGR01316 gltA glutamate synth 96.3 0.0057 1.2E-07 70.7 5.9 60 148-208 134-206 (449)
417 PRK06801 hypothetical protein; 96.2 0.24 5.2E-06 53.3 17.6 146 564-750 75-238 (286)
418 PRK08773 2-octaprenyl-3-methyl 96.2 0.021 4.5E-07 64.7 10.2 32 149-181 8-39 (392)
419 TIGR03143 AhpF_homolog putativ 96.2 0.019 4.1E-07 68.2 10.2 89 150-257 7-114 (555)
420 cd00331 IGPS Indole-3-glycerol 96.2 0.049 1.1E-06 56.4 12.0 97 632-761 10-115 (217)
421 PF00743 FMO-like: Flavin-bind 96.2 0.017 3.6E-07 67.9 9.4 33 148-181 2-34 (531)
422 PRK05868 hypothetical protein; 96.2 0.023 5E-07 64.0 10.3 32 149-181 3-34 (372)
423 PRK06183 mhpA 3-(3-hydroxyphen 96.2 0.039 8.5E-07 65.4 12.5 32 149-181 12-43 (538)
424 PRK12814 putative NADPH-depend 96.2 0.0073 1.6E-07 73.1 6.4 84 148-257 194-290 (652)
425 PRK08227 autoinducer 2 aldolas 96.2 0.14 3.1E-06 54.1 15.1 149 564-766 75-245 (264)
426 COG4529 Uncharacterized protei 96.1 0.2 4.4E-06 56.6 16.9 36 146-181 195-231 (474)
427 PRK07333 2-octaprenyl-6-methox 96.1 0.038 8.2E-07 62.8 11.7 32 149-181 3-36 (403)
428 cd06556 ICL_KPHMT Members of t 96.1 0.2 4.3E-06 52.5 15.9 180 582-817 24-231 (240)
429 cd00408 DHDPS-like Dihydrodipi 96.1 0.31 6.8E-06 52.5 18.1 145 564-761 67-215 (281)
430 PLN02852 ferredoxin-NADP+ redu 96.1 0.0079 1.7E-07 69.6 5.9 35 147-182 26-62 (491)
431 COG1148 HdrA Heterodisulfide r 96.1 0.013 2.9E-07 65.2 7.2 78 145-224 122-216 (622)
432 PRK06126 hypothetical protein; 96.1 0.05 1.1E-06 64.6 12.9 33 148-181 8-40 (545)
433 PRK09427 bifunctional indole-3 96.1 0.13 2.9E-06 58.8 15.6 169 579-776 72-269 (454)
434 PF00890 FAD_binding_2: FAD bi 96.1 0.045 9.7E-07 62.6 12.0 59 196-266 152-210 (417)
435 PRK07588 hypothetical protein; 96.1 0.029 6.3E-07 63.5 10.4 32 149-181 2-33 (391)
436 PRK12775 putative trifunctiona 96.1 0.0077 1.7E-07 76.0 6.1 60 148-208 431-503 (1006)
437 cd06556 ICL_KPHMT Members of t 96.1 0.096 2.1E-06 54.9 13.3 105 564-724 74-199 (240)
438 PRK06475 salicylate hydroxylas 96.1 0.043 9.3E-07 62.4 11.7 34 147-181 2-35 (400)
439 PRK08163 salicylate hydroxylas 96.1 0.037 8E-07 62.7 11.2 33 148-181 5-37 (396)
440 COG0578 GlpA Glycerol-3-phosph 96.1 0.039 8.3E-07 63.8 11.1 50 195-255 174-223 (532)
441 cd00408 DHDPS-like Dihydrodipi 96.0 0.19 4E-06 54.3 16.0 83 574-665 15-100 (281)
442 PLN02898 HMP-P kinase/thiamin- 96.0 0.17 3.7E-06 59.4 16.7 50 700-751 429-481 (502)
443 PRK12769 putative oxidoreducta 96.0 0.0075 1.6E-07 73.1 5.5 59 149-208 329-400 (654)
444 PRK07251 pyridine nucleotide-d 96.0 0.013 2.8E-07 67.6 7.0 31 150-181 6-36 (438)
445 PRK01130 N-acetylmannosamine-6 96.0 0.15 3.4E-06 52.8 14.4 119 575-745 21-146 (221)
446 cd00945 Aldolase_Class_I Class 96.0 0.13 2.8E-06 52.0 13.6 127 575-749 11-153 (201)
447 PRK07845 flavoprotein disulfid 95.9 0.047 1E-06 63.5 11.5 32 149-181 3-34 (466)
448 cd00952 CHBPH_aldolase Trans-o 95.9 0.12 2.6E-06 56.5 13.9 84 574-666 26-112 (309)
449 PRK05714 2-octaprenyl-3-methyl 95.9 0.044 9.6E-07 62.4 10.9 32 149-181 4-35 (405)
450 PRK12778 putative bifunctional 95.9 0.008 1.7E-07 74.1 5.1 83 149-256 433-528 (752)
451 TIGR01305 GMP_reduct_1 guanosi 95.9 0.15 3.3E-06 55.2 13.9 99 615-745 78-178 (343)
452 COG0329 DapA Dihydrodipicolina 95.9 0.12 2.5E-06 56.3 13.2 86 574-668 22-110 (299)
453 cd00951 KDGDH 5-dehydro-4-deox 95.8 0.094 2E-06 56.8 12.5 86 574-668 18-105 (289)
454 PRK09126 hypothetical protein; 95.8 0.05 1.1E-06 61.6 10.8 33 149-182 5-37 (392)
455 PRK07190 hypothetical protein; 95.8 0.063 1.4E-06 62.7 11.8 32 149-181 7-38 (487)
456 TIGR01988 Ubi-OHases Ubiquinon 95.8 0.05 1.1E-06 61.2 10.7 32 150-182 2-33 (385)
457 TIGR01813 flavo_cyto_c flavocy 95.8 0.088 1.9E-06 60.7 12.9 31 150-181 2-33 (439)
458 PRK05249 soluble pyridine nucl 95.8 0.057 1.2E-06 62.7 11.3 31 150-181 8-38 (461)
459 PRK12771 putative glutamate sy 95.8 0.012 2.6E-07 70.2 5.7 61 147-208 137-210 (564)
460 COG0800 Eda 2-keto-3-deoxy-6-p 95.8 0.069 1.5E-06 53.9 10.1 86 622-743 5-90 (211)
461 COG0654 UbiH 2-polyprenyl-6-me 95.8 0.048 1E-06 61.7 10.4 31 149-180 4-34 (387)
462 PF00701 DHDPS: Dihydrodipicol 95.8 0.25 5.5E-06 53.5 15.6 143 564-760 71-218 (289)
463 PRK06452 sdhA succinate dehydr 95.8 0.079 1.7E-06 63.1 12.5 30 150-180 8-37 (566)
464 PRK03620 5-dehydro-4-deoxygluc 95.7 0.15 3.2E-06 55.8 13.6 85 574-667 25-111 (303)
465 TIGR03249 KdgD 5-dehydro-4-deo 95.7 0.14 3.1E-06 55.7 13.5 86 574-668 23-110 (296)
466 PRK06753 hypothetical protein; 95.7 0.059 1.3E-06 60.5 10.9 32 149-181 2-33 (373)
467 PRK11320 prpB 2-methylisocitra 95.7 0.47 1E-05 51.1 17.0 78 583-663 30-112 (292)
468 PRK08010 pyridine nucleotide-d 95.7 0.041 8.9E-07 63.5 9.7 31 150-181 6-36 (441)
469 TIGR02317 prpB methylisocitrat 95.7 0.49 1.1E-05 50.9 17.0 78 583-663 26-107 (285)
470 PRK06843 inosine 5-monophospha 95.7 0.21 4.6E-06 56.0 14.6 70 645-745 153-222 (404)
471 PRK08013 oxidoreductase; Provi 95.7 0.079 1.7E-06 60.3 11.6 33 149-182 5-37 (400)
472 TIGR01812 sdhA_frdA_Gneg succi 95.7 0.098 2.1E-06 62.4 12.9 31 150-181 2-32 (566)
473 cd04729 NanE N-acetylmannosami 95.6 0.29 6.3E-06 50.7 14.7 119 575-745 25-150 (219)
474 PRK07121 hypothetical protein; 95.6 0.095 2.1E-06 61.4 12.3 31 150-181 23-53 (492)
475 PRK05976 dihydrolipoamide dehy 95.6 0.065 1.4E-06 62.4 10.9 31 149-180 6-36 (472)
476 TIGR01424 gluta_reduc_2 glutat 95.6 0.046 9.9E-07 63.2 9.5 30 150-180 5-34 (446)
477 PRK12858 tagatose 1,6-diphosph 95.6 0.092 2E-06 57.8 11.2 170 583-778 112-311 (340)
478 PRK11320 prpB 2-methylisocitra 95.6 0.63 1.4E-05 50.1 17.3 152 562-751 77-240 (292)
479 PRK13984 putative oxidoreducta 95.6 0.021 4.7E-07 68.6 7.0 82 149-256 285-379 (604)
480 TIGR02023 BchP-ChlP geranylger 95.6 0.1 2.2E-06 59.2 12.0 30 150-180 3-32 (388)
481 PRK07573 sdhA succinate dehydr 95.6 0.11 2.3E-06 62.8 12.9 29 150-179 38-66 (640)
482 TIGR02028 ChlP geranylgeranyl 95.6 0.095 2.1E-06 59.6 11.8 32 149-181 2-33 (398)
483 KOG4175|consensus 95.6 0.26 5.5E-06 48.7 12.8 185 564-749 18-239 (268)
484 TIGR00734 hisAF_rel hisA/hisF 95.6 0.075 1.6E-06 55.1 10.0 86 643-760 35-122 (221)
485 PRK00230 orotidine 5'-phosphat 95.5 0.36 7.8E-06 50.4 15.1 132 574-763 67-227 (230)
486 PRK08132 FAD-dependent oxidore 95.5 0.17 3.7E-06 60.1 14.4 33 148-181 24-56 (547)
487 PRK02227 hypothetical protein; 95.5 0.75 1.6E-05 47.6 16.8 157 566-769 3-175 (238)
488 PRK13957 indole-3-glycerol-pho 95.5 0.13 2.7E-06 53.9 11.4 74 645-749 62-135 (247)
489 KOG1399|consensus 95.5 0.075 1.6E-06 60.8 10.7 34 147-181 6-39 (448)
490 TIGR03569 NeuB_NnaB N-acetylne 95.5 0.83 1.8E-05 50.2 18.3 143 585-772 104-260 (329)
491 TIGR02317 prpB methylisocitrat 95.5 0.66 1.4E-05 49.9 17.2 164 563-767 73-248 (285)
492 cd00954 NAL N-Acetylneuraminic 95.5 0.42 9.1E-06 51.8 16.1 84 574-666 18-105 (288)
493 TIGR00683 nanA N-acetylneurami 95.5 0.2 4.3E-06 54.3 13.4 85 574-667 18-106 (290)
494 PRK06467 dihydrolipoamide dehy 95.5 0.089 1.9E-06 61.2 11.5 31 150-181 7-37 (471)
495 TIGR01984 UbiH 2-polyprenyl-6- 95.5 0.07 1.5E-06 60.1 10.4 31 150-181 2-33 (382)
496 PRK11445 putative oxidoreducta 95.4 0.1 2.3E-06 58.2 11.4 30 150-181 4-33 (351)
497 PRK06015 keto-hydroxyglutarate 95.4 0.078 1.7E-06 53.8 9.3 68 642-743 14-81 (201)
498 PF01081 Aldolase: KDPG and KH 95.4 0.07 1.5E-06 54.0 8.9 68 642-743 18-85 (196)
499 COG0493 GltD NADPH-dependent g 95.4 0.018 3.8E-07 66.1 5.2 60 148-208 124-196 (457)
500 COG2513 PrpB PEP phosphonomuta 95.4 0.24 5.2E-06 52.3 12.9 157 583-764 31-202 (289)
No 1
>KOG1799|consensus
Probab=100.00 E-value=3.5e-63 Score=503.81 Aligned_cols=454 Identities=30% Similarity=0.473 Sum_probs=398.4
Q ss_pred ccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHH
Q psy16199 236 EDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAA 315 (842)
Q Consensus 236 ~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA 315 (842)
.++|+..-..+|+++.+.|-. ..+.+. .+.++ .||.-..+++-..|||.||+.. ..+....+++| .++
T Consensus 4 ~~d~~~~~~~~~~~~t~~g~~-~~tai~----p~~l~-----~v~s~a~~~s~~~i~A~gdi~s-aeS~l~~~~~G-~s~ 71 (471)
T KOG1799|consen 4 KSDGTPWPAVGIAKRTTYGGV-SGTAIR----PIALR-----AVTSIARALSGFPILATGDIDS-AESGLQFLHSG-ASV 71 (471)
T ss_pred ccCCceeeEeeeEEEeecccc-chhhcc----chhHH-----HHHHHhhccCCceeeccCCcch-hhhcCcccccc-HHH
Confidence 345666778899999999954 222221 23333 3555567888999999999973 45667788999 899
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCceeeccccccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCC
Q psy16199 316 WHIHKYIQEKNNLTVPDKPCLPKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQK 395 (842)
Q Consensus 316 ~~I~~~L~~~~~~~~~~~~~~p~~~t~i~~~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~ 395 (842)
+++++++|.++ ......+++|.+++.++.++..++++|.++.|||..+|+|++.+++.+++|++.|||++.+||..++.
T Consensus 72 l~v~saiqs~~-~~v~e~~~~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~ 150 (471)
T KOG1799|consen 72 LQVCSAIQSQD-FTVIEDYTGLKALLYLKSIEELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDE 150 (471)
T ss_pred HHHHHHHhcCC-CcccccccchhhhcchhhhhhhccccCccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecch
Confidence 99999999865 44555668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCcceecccccccccCCCCcceeeeEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCC
Q psy16199 396 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNG 475 (842)
Q Consensus 396 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 475 (842)
+.+.|++||++++.+++..|+|.+..+.|+|+|||+++|+|| .. +.++|
T Consensus 151 ~kV~nv~prvar~~t~~~~~~p~~~i~~nielIsdr~~e~~L---~~--------------f~eLk-------------- 199 (471)
T KOG1799|consen 151 NKVRNVEPRVARSPTKRSCFIPKRPIPTNIELISDRKAEQYL---GT--------------FGELK-------------- 199 (471)
T ss_pred hhheecccceeeccCCCCccccCCCccchhhhhccchHHHHH---HH--------------HHHhc--------------
Confidence 999999999999999999999999999999999999999999 65 66776
Q ss_pred CCCCCCCChhHHHHhhhhhhCccccccccCccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccc
Q psy16199 476 LPKRQINTPVETILSVKDVIGQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDE 555 (842)
Q Consensus 476 ~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~ 555 (842)
+ + .|.
T Consensus 200 ---~----------------------------------------~-----------------------~p~--------- 204 (471)
T KOG1799|consen 200 ---N----------------------------------------V-----------------------EPV--------- 204 (471)
T ss_pred ---c----------------------------------------c-----------------------CCc---------
Confidence 3 2 333
Q ss_pred cccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccE
Q psy16199 556 CTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635 (842)
Q Consensus 556 ~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv 635 (842)
+.+|+|+||-++..+|.+++.+.+++|+|.+|+||||||.|.++++|.+++|+|..+.|++.||+..+.+|+
T Consensus 205 --------~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~ 276 (471)
T KOG1799|consen 205 --------VIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPIVDCEVCGWINAKATIPM 276 (471)
T ss_pred --------eeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChhhhHHHhhhhhhcccccc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 636 ~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
+-|++||+++..++|+.+...|+.||.++||+.+.|++|.+ +.||....++++.+||||+.+++|+|+..|..|++.+.
T Consensus 277 ~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~-~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~ 355 (471)
T KOG1799|consen 277 VSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMK-TLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK 355 (471)
T ss_pred ccccCCCcccccccchhcCcccccchhhHhHHHHHhccccc-ccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 77888888999999999999999999999999999997
Q ss_pred CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHHHhcCC-CccccCCCCCCCccccCCCCCC
Q psy16199 716 NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAY 794 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~~~~~~~~~~g~~~~ 794 (842)
++||.+.|||.|++|+.+||++|++.|||||+++.+|+..++.+..+|+++|++.|+ +|++|+|+++ +.+.
T Consensus 356 ~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL-----~~~~--- 427 (471)
T KOG1799|consen 356 EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQHNFSTIEEFRGHSL-----QYFT--- 427 (471)
T ss_pred cCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHHHcCchhhhhccCcch-----hhhh---
Confidence 899999999999999999999999999999999999999999999999999999999 9999999853 2221
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhcccCCCccccC
Q psy16199 795 QFRDKEGKAIPNFGEYKKIRENLITELNLKKLNSDGVSLQN 835 (842)
Q Consensus 795 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (842)
.+.+.+..+++.+++..++++.. ...+.|.+
T Consensus 428 -------~~~~~~~r~ke~~Eq~~A~K~~~---~~~~D~~~ 458 (471)
T KOG1799|consen 428 -------THTDLVKRQKEAVEQRKAEKRGL---KSDKDWTG 458 (471)
T ss_pred -------ccchHHHHHHHHHHHHHHHhhcc---cccccccC
Confidence 23445666677776666655444 44445543
No 2
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=100.00 E-value=4.9e-59 Score=508.90 Aligned_cols=355 Identities=36% Similarity=0.618 Sum_probs=307.3
Q ss_pred ccccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccc-cccCCCCcce
Q psy16199 344 DLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSR-HLYGPEQGSF 422 (842)
Q Consensus 344 ~~~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~ 422 (842)
.+.+|++++.|++++|||++||+|+++..+.+++++++|||++|+||++.++...+|++||+.+..... ..++++..||
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl 86 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGW 86 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccc
Confidence 467899999999999999999999999999999999999999999999998865689999998742110 1244566799
Q ss_pred eeeEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCcccccc
Q psy16199 423 LNIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRV 502 (842)
Q Consensus 423 ~n~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~v 502 (842)
.|.|+|||++++.|+ .. ++.++ +
T Consensus 87 ~N~~~~s~~g~~~~l---~~--------------i~~~k-----------------~----------------------- 109 (385)
T PLN02495 87 QNIELISDRPFETML---AE--------------FKQLK-----------------E----------------------- 109 (385)
T ss_pred cCcccccccCHHHHH---HH--------------HHHHH-----------------h-----------------------
Confidence 999999999999999 44 44443 1
Q ss_pred ccCccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHH
Q psy16199 503 TNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLEL 582 (842)
Q Consensus 503 t~~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~ 582 (842)
+ +++ +|+|+||+.+.++++|.++
T Consensus 110 -----------------~-----------------------~~~-----------------~pvIaSi~~~~s~~~~~~~ 132 (385)
T PLN02495 110 -----------------E-----------------------YPD-----------------RILIASIMEEYNKDAWEEI 132 (385)
T ss_pred -----------------h-----------------------CCC-----------------CcEEEEccCCCCHHHHHHH
Confidence 1 222 7999999766899999999
Q ss_pred HHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEE
Q psy16199 583 SKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVS 662 (842)
Q Consensus 583 a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~ 662 (842)
+++++++|+|+||||+||||++.++++|..++++++.+.+++++|++.+++||+|||+|+++++.++|++++++|+|||+
T Consensus 133 a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~ 212 (385)
T PLN02495 133 IERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVA 212 (385)
T ss_pred HHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCccccCCCCC-CCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-----CCcEEEecCcCCHHHHHHHHH
Q psy16199 663 AINTVSGLMSLSADG-NPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-----NFPILGIGGIDSADVALQFIQ 736 (842)
Q Consensus 663 v~nt~~~~~~~~~~~-~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-----~ipIi~~GGI~t~~da~~~l~ 736 (842)
++||+.+.+.+|+++ .+.|.++ +.+..||+||++++|+|++.++++++.+. ++||||+|||.|++||.++|+
T Consensus 213 liNT~~~~~~ID~~t~~p~~~~~--~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~ 290 (385)
T PLN02495 213 AINTIMSVMGINLDTLRPEPCVE--GYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL 290 (385)
T ss_pred EecccCcccccccccCccccccC--CCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH
Confidence 999999888888885 4444432 24578999999999999999999999863 499999999999999999999
Q ss_pred hCCCEEEEehhhhccCchhHHHHHHHHHHHHHhcCCCccccCCCCCCCccccCCCCCCcchhhccCCCCCchhhHH----
Q psy16199 737 AGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLKSTQLKGWDGQSPPTPVHQKGKPAYQFRDKEGKAIPNFGEYKK---- 812 (842)
Q Consensus 737 ~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~~i~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~---- 812 (842)
+||++|||||+++++||.++.+|+++|++||+++|+ .++.|++|.+++++.++.+
T Consensus 291 aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~---------------------~si~e~~G~~~~~~~~~~~l~~~ 349 (385)
T PLN02495 291 LGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNF---------------------SSIEDFRGASLPYFTTHTDLVQR 349 (385)
T ss_pred hCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCC---------------------CCHHHHhCcCCcccCcHHHhhHH
Confidence 999999999999999999999999999999988755 4455555666666666644
Q ss_pred HHHHHHHHHHhhcccCCCccccC
Q psy16199 813 IRENLITELNLKKLNSDGVSLQN 835 (842)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~ 835 (842)
.+..+.+++|+.++...+..|.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~ 372 (385)
T PLN02495 350 QKEAIRQRKAIRKGLASDKDWTG 372 (385)
T ss_pred HHHhhCHHHHhhhcccccccccc
Confidence 34578888999999999999975
No 3
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4e-55 Score=460.94 Aligned_cols=292 Identities=33% Similarity=0.486 Sum_probs=260.3
Q ss_pred ccccCCcccccCCCC-CCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 463 KKLNSDGVSLQNGLP-KRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 463 ~~~~~~~~g~~~g~d-k~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
+..|+||+|||+|+| |+ .+.+..+.++ +|| +++|||++||+|||+ |+||+++++.+||+ |||||.|+
T Consensus 8 Gl~f~NPl~lAaG~~~~~-----~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~----mG~~N~G~ 78 (310)
T COG0167 8 GLKFPNPLGLAAGFDGKN-----GEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINR----MGFNNPGA 78 (310)
T ss_pred ceecCCCCeEcccCCccC-----HHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHh----cCCCchhH
Confidence 566999999999999 89 8888888877 566 999999999999999 99999999999999 99999999
Q ss_pred hhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcC-cCEEEEeccCCCCCCCCCCcccCCCCH
Q psy16199 539 QAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDP 617 (842)
Q Consensus 539 dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~ag-aD~ielN~scP~~~~~~~~G~~~~~~~ 617 (842)
+++.......+.+.. .-..+++.++. +.+.++|.+++..+++++ +|+||||+||||+++ |.++++++
T Consensus 79 ~~~~~~l~~~~~~~~-------~~~~~i~~~~~-~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g----~~~l~~~~ 146 (310)
T COG0167 79 DAFLEELKLAKYEGK-------PIGVNIGKNKG-GPSEEAWADYARLLEEAGDADAIELNISCPNTPG----GRALGQDP 146 (310)
T ss_pred HHHHHHHHhhhhccC-------CcCcceEEecC-CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCC----hhhhccCH
Confidence 999986543222110 11145677764 668999999999999988 999999999999765 67788899
Q ss_pred HHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCC
Q psy16199 618 EMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGN 697 (842)
Q Consensus 618 ~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~ 697 (842)
+.+.+++++|++.+++||+|||+|+++++.++|+++.++|+|||+++||+.+.+.++++.. .|.. .+..||+||+
T Consensus 147 e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~-~~~~----~~~~GGLSG~ 221 (310)
T COG0167 147 ELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETK-KPVL----ANETGGLSGP 221 (310)
T ss_pred HHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeecccccccccccc-cccc----CcCCCCcCcc
Confidence 9999999999999999999999999999999999999999999999999998887887743 3433 4579999999
Q ss_pred ccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHHHhcCC-Ccc
Q psy16199 698 ATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLKST-QLK 775 (842)
Q Consensus 698 ~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~ 775 (842)
+++|+++++|+++++++. ++||||+|||.||+||+|+|++||++|||||+++++||+++++|.++|.+||+++|+ +++
T Consensus 222 ~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~si~ 301 (310)
T COG0167 222 PLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFESIQ 301 (310)
T ss_pred cchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999983 499999999999999999999999999999999999999999999999999999999 888
Q ss_pred ccCCC
Q psy16199 776 GWDGQ 780 (842)
Q Consensus 776 ~~~~~ 780 (842)
|++|.
T Consensus 302 d~iG~ 306 (310)
T COG0167 302 DIIGS 306 (310)
T ss_pred HHhch
Confidence 88875
No 4
>PLN02826 dihydroorotate dehydrogenase
Probab=100.00 E-value=6.1e-51 Score=450.13 Aligned_cols=294 Identities=22% Similarity=0.296 Sum_probs=248.0
Q ss_pred ccccCCcccccCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccchh
Q psy16199 463 KKLNSDGVSLQNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGYQ 539 (842)
Q Consensus 463 ~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~d 539 (842)
+..|.|||||||||||+ ++.+..|.++ +|| |+|||||.||+|||+ |+||+++++++||+ |||||.|++
T Consensus 80 Gl~f~NPvglAAG~dkn-----~~~~~~l~~lGfG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~----~Gfnn~G~~ 150 (409)
T PLN02826 80 GRTFSNPIGLAAGFDKN-----AEAVEGLLGLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINR----YGFNSEGIV 150 (409)
T ss_pred CEECCCCCEECcccCCC-----HHHHHHHHhcCCCeEEeCCccCCCCCCCCCCcEEecCCCceeEec----CCCCCcCHH
Confidence 67799999999999999 9999999988 455 999999999999999 99999999999999 999999999
Q ss_pred hhhcCcccccccc-cc----cccc------cc-ccccceEEEeccCC-----CHhHHHHHHHHHhhcCcCEEEEeccCCC
Q psy16199 540 AITFHPETHQAHV-TD----ECTG------CT-LCLSILIASIMCTY-----NKDDWLELSKKTEKAGADALELNLSCPH 602 (842)
Q Consensus 540 ai~~~~~~~~~~~-~~----~~~~------~~-~~~~pvi~si~~g~-----~~e~~~~~a~~~~~agaD~ielN~scP~ 602 (842)
+...+........ .. .... .. ....|+++||. ++ ..+||.++++++.+ +||+||||+||||
T Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg-~nk~~~~~~~Dy~~~~~~~~~-~aDylelNiScPN 228 (409)
T PLN02826 151 AVAKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLG-KNKTSEDAAADYVQGVRALSQ-YADYLVINVSSPN 228 (409)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCceEEEEec-cCCCCcccHHHHHHHHHHHhh-hCCEEEEECCCCC
Confidence 9988665211000 00 0000 00 01238999994 33 36899999999875 7999999999999
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHhh---------CCccEEEEecCChh--cHHHHHHHHHHCCCCEEEEecCCCccc
Q psy16199 603 GMGERGMGLACGQDPEMVRNISLWVRSS---------VKIPFFVKLTPNIT--NITDIAKAAYEGKADGVSAINTVSGLM 671 (842)
Q Consensus 603 ~~~~~~~G~~~~~~~~~~~~ii~~v~~~---------~~~Pv~vKl~p~~~--~~~~~a~~~~~~G~d~i~v~nt~~~~~ 671 (842)
+++.+. .++++.+.+++++|++. .++||+||++|+++ ++.++|+.+.++|+|||+++||+.++.
T Consensus 229 tpglr~-----lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~ 303 (409)
T PLN02826 229 TPGLRK-----LQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRP 303 (409)
T ss_pred CCCccc-----ccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCc
Confidence 976665 48999999999999754 46899999999997 799999999999999999999987653
Q ss_pred cCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 672 SLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 672 ~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
. ++... + .....||+||++++|.++++++++++.++ ++|||++|||.|++||+++|++||++||+||++++
T Consensus 304 ~-dl~~~--~-----~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 304 D-SVLGH--P-----HADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred c-chhcc--c-----ccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 2 22211 1 12468999999999999999999999885 59999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 751 QDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 751 ~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
+||.++.+|+++|.+||+++|+ +++|+.|.
T Consensus 376 ~Gp~~i~~I~~eL~~~l~~~G~~si~e~iG~ 406 (409)
T PLN02826 376 EGPALIPRIKAELAACLERDGFKSIQEAVGA 406 (409)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 9999999999999999999998 88888774
No 5
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=100.00 E-value=6.8e-49 Score=444.98 Aligned_cols=313 Identities=43% Similarity=0.700 Sum_probs=277.6
Q ss_pred cccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccC-cceecccccccccCCCCccee
Q psy16199 345 LVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVS-PRIVKGTTSRHLYGPEQGSFL 423 (842)
Q Consensus 345 ~~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 423 (842)
|++|+++++|++|.||+++||+|++++.+++.++++.|||++|+||++ +. .+|+. ||+.+... +.. ...||.
T Consensus 1 m~~L~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~~~g~Gavv~kti~--~~-~gn~~~pr~~~~~~-~~~---~~~g~~ 73 (420)
T PRK08318 1 MADLSITFCGIKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG--PP-IVNVSSPRFGALVK-EDR---RFIGFN 73 (420)
T ss_pred CCCceEEECCEecCCCcEeCCcCCCCCHHHHHHHHHhCCCEEEEeecC--CC-CCCCCCCeEEEecC-CCc---cccccc
Confidence 468999999999999999999999999999999999999999999999 43 47998 99986421 111 235899
Q ss_pred eeEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccc
Q psy16199 424 NIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVT 503 (842)
Q Consensus 424 n~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt 503 (842)
|.|.+|++.+++|+ .. +..++ .
T Consensus 74 n~~~~s~~~~~~~~---~~--------------~~~~~-----------------~------------------------ 95 (420)
T PRK08318 74 NIELITDRPLEVNL---RE--------------IRRVK-----------------R------------------------ 95 (420)
T ss_pred CcccccccCHHHHH---HH--------------HHHHH-----------------h------------------------
Confidence 99999999999998 43 22332 1
Q ss_pred cCccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHH
Q psy16199 504 NYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELS 583 (842)
Q Consensus 504 ~~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a 583 (842)
. .++ .|+|+||++..++++|.+++
T Consensus 96 ----------------~-----------------------~~~-----------------~p~i~si~g~~~~~~~~~~a 119 (420)
T PRK08318 96 ----------------D-----------------------YPD-----------------RALIASIMVECNEEEWKEIA 119 (420)
T ss_pred ----------------h-----------------------CCC-----------------ceEEEEeccCCCHHHHHHHH
Confidence 0 111 68999998432899999999
Q ss_pred HHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEE
Q psy16199 584 KKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSA 663 (842)
Q Consensus 584 ~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v 663 (842)
+.++++|+|+||||+||||+...+++|+.++++++.+.++++++++.+++||+|||+|+++++.++|++++++|+|+|++
T Consensus 120 ~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 120 PLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred HHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 99999999999999999997777889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccCCCCC-CCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC--CCcEEEecCcCCHHHHHHHHHhCCC
Q psy16199 664 INTVSGLMSLSADG-NPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP--NFPILGIGGIDSADVALQFIQAGAH 740 (842)
Q Consensus 664 ~nt~~~~~~~~~~~-~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~--~ipIi~~GGI~t~~da~~~l~~GA~ 740 (842)
+||+.+++.+|+++ ++.|.+ |+++..|||||++++|++|++|++++++++ ++||||+|||.|++||+++|++|||
T Consensus 200 ~Nt~~~~~~id~~~~~~~p~~--~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~ 277 (420)
T PRK08318 200 INTINSITGVDLDRMIPMPIV--NGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAG 277 (420)
T ss_pred ecccCccccccccccCCCcee--cCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCC
Confidence 99999988899886 556766 557789999999999999999999999873 7999999999999999999999999
Q ss_pred EEEEehhhhccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 741 AVQICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 741 ~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
+|||||+++++||.++.+|.++|+.||+..|+ +++++.|.
T Consensus 278 ~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e~iG~ 318 (420)
T PRK08318 278 TVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVGL 318 (420)
T ss_pred hheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHHHHhcc
Confidence 99999999999999999999999999999999 99999985
No 6
>KOG1436|consensus
Probab=100.00 E-value=2.5e-49 Score=399.41 Aligned_cols=290 Identities=26% Similarity=0.323 Sum_probs=238.6
Q ss_pred cccccCCcccccCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 462 LKKLNSDGVSLQNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 462 ~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
++..|+||+|+||||||+ ++.++.|+++ +|| |+|+|||.||+|||+ |.||+++|.++||| |||||+|+
T Consensus 89 ~g~~f~NPiglAAGfdk~-----~eaidgL~~~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINr----yGfns~Gi 159 (398)
T KOG1436|consen 89 LGRKFSNPIGLAAGFDKN-----AEAIDGLANSGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINR----YGFNSEGI 159 (398)
T ss_pred hhhhccCchhhhhccCcc-----hHHHHHHHhCCCceEEecccccCCCCCCCCCceEecccccchhhc----cCCCcccH
Confidence 467899999999999999 9999999996 455 999999999999999 99999999999999 99999999
Q ss_pred hhhhcCccc-cccccccccccccccccceEEEecc-CCCHhHHHHHHHHHhhc--CcCEEEEeccCCCCCCCCCCcccCC
Q psy16199 539 QAITFHPET-HQAHVTDECTGCTLCLSILIASIMC-TYNKDDWLELSKKTEKA--GADALELNLSCPHGMGERGMGLACG 614 (842)
Q Consensus 539 dai~~~~~~-~~~~~~~~~~~~~~~~~pvi~si~~-g~~~e~~~~~a~~~~~a--gaD~ielN~scP~~~~~~~~G~~~~ 614 (842)
+++..+.+. +.....+.. .++-+++.- ..+.++..++++-+... .+|+++||+||||+++.+.+
T Consensus 160 ~~vl~rl~~~r~~~~~e~~-------~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpGlr~l----- 227 (398)
T KOG1436|consen 160 DAVLQRLRAKRQAKYPEAP-------AKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGLRSL----- 227 (398)
T ss_pred HHHHHHHHHHHHhcCCCcc-------ccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcchhhh-----
Confidence 999987753 111111111 122222211 12344444454444432 59999999999999999986
Q ss_pred CCHHHHHHHHHHHHhhC-------CccEEEEecCChh--cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccC
Q psy16199 615 QDPEMVRNISLWVRSSV-------KIPFFVKLTPNIT--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT 685 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~-------~~Pv~vKl~p~~~--~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~ 685 (842)
|....+.+++..+..+. +.|+++|+.||+. +..+++..+++..+|+++++||+.++..- .+..
T Consensus 228 q~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~--------~~~~ 299 (398)
T KOG1436|consen 228 QKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKA--------SLVN 299 (398)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCcc--------cccc
Confidence 77777777777776542 4699999999987 78899999999999999999998765211 1122
Q ss_pred CCccccCCCCCCccccchHHHHHHHHhhC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 686 KKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 686 ~~~~~~gG~sG~~~~p~al~~v~~i~~~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
..+++.||+||++++|+++..++++++.+ ++|||||+|||.|++||.|.+.+||++||++|++.+.||.++.+|+.+|.
T Consensus 300 ~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El~ 379 (398)
T KOG1436|consen 300 KLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKRELS 379 (398)
T ss_pred ccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHHH
Confidence 45678999999999999999999999987 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-CccccCCC
Q psy16199 765 TLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 765 ~~m~~~g~-~i~~~~~~ 780 (842)
+.|+.+|+ +++|++|+
T Consensus 380 ~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 380 ALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHhcCCCcHHHhccC
Confidence 99999999 98888875
No 7
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=100.00 E-value=1.7e-48 Score=421.54 Aligned_cols=300 Identities=22% Similarity=0.295 Sum_probs=255.3
Q ss_pred cceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeE
Q psy16199 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIE 426 (842)
Q Consensus 347 ~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e 426 (842)
+|+++++|++|+||+++||++.+.+.+.+++..++|+|++|+||++.+|+. +|++||+.+. ..+++|..
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~~~~~g~Gavv~ktit~~p~~-gn~~pr~~~~----------~~~~~N~~ 69 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLEPRP-GNPEPRYADT----------PLGSINSM 69 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCcEEEeCccCCCCCC-CCCCCeEEEC----------cchhhccC
Confidence 468899999999999999999999999999999999999999999999875 8999999863 25789997
Q ss_pred eecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCc
Q psy16199 427 LISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYT 506 (842)
Q Consensus 427 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~ 506 (842)
.+++..++.|+ +. ++.++ .
T Consensus 70 Gl~n~g~~~~~---~~--------------i~~~~-----------------~--------------------------- 88 (310)
T PRK02506 70 GLPNLGFDYYL---DY--------------VLELQ-----------------K--------------------------- 88 (310)
T ss_pred CCCCcCHHHHH---HH--------------HHHHH-----------------h---------------------------
Confidence 77777777777 33 33332 1
Q ss_pred cCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHH
Q psy16199 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKT 586 (842)
Q Consensus 507 ~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~ 586 (842)
. .+ +.|+|+||+ |.++++|.++++.+
T Consensus 89 -------------~-----------------------~~-----------------~~pvI~Si~-G~~~~~~~~~a~~~ 114 (310)
T PRK02506 89 -------------K-----------------------GP-----------------NKPHFLSVV-GLSPEETHTILKKI 114 (310)
T ss_pred -------------h-----------------------cC-----------------CCCEEEEEE-eCcHHHHHHHHHHH
Confidence 0 01 179999997 68999999999999
Q ss_pred hhcC-cCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHH---HCCCCEEE
Q psy16199 587 EKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAY---EGKADGVS 662 (842)
Q Consensus 587 ~~ag-aD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~---~~G~d~i~ 662 (842)
+++| +|+||||+||||+.+ +..+++|++.+.+++++|++.+++||+||++|++ +..+++++++ +.|+++|+
T Consensus 115 ~~~g~ad~iElN~ScPn~~~----~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~-~~~~~a~~~~~~~~~g~~~i~ 189 (310)
T PRK02506 115 QASDFNGLVELNLSCPNVPG----KPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYF-DIVHFDQAAAIFNKFPLAFVN 189 (310)
T ss_pred hhcCCCCEEEEECCCCCCCC----ccccccCHHHHHHHHHHHHHhcCCccEEecCCCC-CHHHHHHHHHHhCcCceEEEE
Confidence 9888 999999999999754 3445789999999999999999999999999998 5566665554 66788888
Q ss_pred EecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCE
Q psy16199 663 AINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHA 741 (842)
Q Consensus 663 v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~ 741 (842)
.+||++..+.+|++. +.|.+. .....||+||++++|+++++|+++++.++ ++||||+|||.|++||.|+|++||++
T Consensus 190 ~~nt~~~~~~iD~~~-~~~~~~--~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~ 266 (310)
T PRK02506 190 CINSIGNGLVIDPED-ETVVIK--PKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASM 266 (310)
T ss_pred EeccCCCceEEecCC-CCcccc--CCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCH
Confidence 888887555666653 334432 24568999999999999999999999884 69999999999999999999999999
Q ss_pred EEEehhhhccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 742 VQICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 742 Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
||+||+++++||.++.+|+++|++||+++|+ +++|++|+
T Consensus 267 Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 267 VQVGTALHKEGPAVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HhhhHHHHHhChHHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 9999999999999999999999999999999 88888874
No 8
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=7.8e-48 Score=416.23 Aligned_cols=297 Identities=62% Similarity=0.963 Sum_probs=262.7
Q ss_pred cceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccC-CCcccccCcceecccccccccCCCCcceeee
Q psy16199 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQ-KDMVTNVSPRIVKGTTSRHLYGPEQGSFLNI 425 (842)
Q Consensus 347 ~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~ 425 (842)
+|+++++|++|+||+++||++++.+.+.++++.+.|+|++|+||++.+ +.. +|++||+.+... ...+..||.|.
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~~~~~-gn~~pr~~~~~~----~~~n~~g~~n~ 75 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIV-TNVSPRIARLRT----SGRGQIGFNNI 75 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCcCCCC-CCCCCeEEEeCC----CchhcccccCC
Confidence 468899999999999999999999999999999999999999999998 654 899999976422 11256789999
Q ss_pred EeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccC
Q psy16199 426 ELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNY 505 (842)
Q Consensus 426 e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~ 505 (842)
|.+|++.++.|+ .. +..++ +
T Consensus 76 e~~s~~~~~~~~---~~--------------~~~~~-----------------~-------------------------- 95 (299)
T cd02940 76 ELISEKPLEYWL---KE--------------IRELK-----------------K-------------------------- 95 (299)
T ss_pred ccccccCHHHHH---HH--------------HHHHH-----------------h--------------------------
Confidence 999999999998 43 33332 1
Q ss_pred ccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHH
Q psy16199 506 TELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKK 585 (842)
Q Consensus 506 ~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~ 585 (842)
. .++ .|+|+|+++.+++++|.+++++
T Consensus 96 --------------~-----------------------~~~-----------------~p~i~si~G~~~~~~~~~~a~~ 121 (299)
T cd02940 96 --------------D-----------------------FPD-----------------KILIASIMCEYNKEDWTELAKL 121 (299)
T ss_pred --------------h-----------------------CCC-----------------CeEEEEecCCCCHHHHHHHHHH
Confidence 0 011 7999999854499999999999
Q ss_pred HhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEec
Q psy16199 586 TEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAIN 665 (842)
Q Consensus 586 ~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~n 665 (842)
++++|+|+||||+||||.+.++++|+.++++++.+.++++++++.+++||+||++|+++++.+++++++++|+|+|+++|
T Consensus 122 ~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 122 VEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred HHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 99889999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEE
Q psy16199 666 TVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQI 744 (842)
Q Consensus 666 t~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv 744 (842)
|+.+++.+|++.. .|....|+++..||+||++++|.++++|+++++.++ ++|||++|||.|++|+.++|++||++||+
T Consensus 202 t~~~~~~id~~~~-~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 202 TVNSLMGVDLDGT-PPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred ccccccccccccC-CccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 9999888888753 344444678899999999999999999999999983 69999999999999999999999999999
Q ss_pred ehhhhccCchhHHHHHHHH
Q psy16199 745 CSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 745 ~ta~l~~gp~~~~~i~~~l 763 (842)
||+++++||.++.+|+++|
T Consensus 281 ~ta~~~~g~~~~~~i~~~l 299 (299)
T cd02940 281 CTAVMNQGFTIVDDMCTGL 299 (299)
T ss_pred ceeecccCCcHHHHHhhhC
Confidence 9999999999999998875
No 9
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=3.7e-45 Score=398.50 Aligned_cols=298 Identities=21% Similarity=0.252 Sum_probs=244.9
Q ss_pred cceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCC--CcccccCcceecccccccccCCCCcceee
Q psy16199 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQK--DMVTNVSPRIVKGTTSRHLYGPEQGSFLN 424 (842)
Q Consensus 347 ~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~n 424 (842)
||+++++|++|+||+++||++++.+.++++++..+|||++|+||++.++ +. +|+.||+....+ .-|+..|++|
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~-gn~~pr~~~~~~----~~~~~~~~in 75 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIERE-AQELDRFLTYGS----SFAEALSYFP 75 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhhhhc-CCCCCceEeecc----cCcCcccccc
Confidence 4788999999999999999999999999999999999999999999875 44 788888764211 1234567777
Q ss_pred eEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCcccccccc
Q psy16199 425 IELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTN 504 (842)
Q Consensus 425 ~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~ 504 (842)
.+.++....+.|+ +. ++.++ .
T Consensus 76 ~~g~~n~g~~~~~---~~--------------i~~~~-----------------~------------------------- 96 (325)
T cd04739 76 EYGRYNLGPEEYL---EL--------------IRRAK-----------------R------------------------- 96 (325)
T ss_pred cccccCcCHHHHH---HH--------------HHHHH-----------------h-------------------------
Confidence 7555555555555 22 22222 0
Q ss_pred CccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHH
Q psy16199 505 YTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSK 584 (842)
Q Consensus 505 ~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~ 584 (842)
. .+.|+|+||+ +.++++|.++++
T Consensus 97 ---------------------------------------~-----------------~~~pvi~si~-g~~~~~~~~~a~ 119 (325)
T cd04739 97 ---------------------------------------A-----------------VSIPVIASLN-GVSAGGWVDYAR 119 (325)
T ss_pred ---------------------------------------c-----------------cCCeEEEEeC-CCCHHHHHHHHH
Confidence 0 0179999997 578999999999
Q ss_pred HHhhcCcCEEEEeccCCC-CCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEE
Q psy16199 585 KTEKAGADALELNLSCPH-GMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSA 663 (842)
Q Consensus 585 ~~~~agaD~ielN~scP~-~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v 663 (842)
.++++|+|+||||+|||+ ..... |. +.++.+.++++++++.+++||+||++|+++++.+++++++++|+|+|++
T Consensus 120 ~~~~~gad~iElN~s~~~~~~~~~--g~---~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 120 QIEEAGADALELNIYALPTDPDIS--GA---EVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHhcCCCEEEEeCCCCCCCCCcc--cc---hHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 999999999999999974 33322 22 3357899999999999999999999999999999999999999999999
Q ss_pred ecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEE
Q psy16199 664 INTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743 (842)
Q Consensus 664 ~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vq 743 (842)
+||+.. +.+++++. .+ ...+|+||++++|.++++++++++.+ ++|||++|||.|++||.++|++||++||
T Consensus 195 ~nt~~~-~~id~~~~-~~-------~~~~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vq 264 (325)
T cd04739 195 FNRFYQ-PDIDLETL-EV-------VPNLLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVM 264 (325)
T ss_pred EcCcCC-CCcccccc-ce-------ecCCCcCCccchhHHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeE
Confidence 999754 34444421 11 12367999999999999999999988 7999999999999999999999999999
Q ss_pred EehhhhccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 744 ICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 744 v~ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
|||+++++||.++.+|+++|++||+++|+ +++|++|.
T Consensus 265 v~ta~~~~gp~~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 265 TTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred EehhhhhcCchHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 99999999999999999999999999877 77666653
No 10
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.6e-45 Score=396.26 Aligned_cols=285 Identities=22% Similarity=0.255 Sum_probs=242.1
Q ss_pred eecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEeecc
Q psy16199 351 EICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE 430 (842)
Q Consensus 351 ~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~~s~ 430 (842)
+++|++|+||+++||++++.+.+++++++++|||++|+||++.++.. +|++||+.+. ..+++|.+.+++
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~-gn~~pr~~~~----------~~~~~N~~G~~n 70 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAGRP-GNPEPRYYAF----------PLGSINSLGLPN 70 (294)
T ss_pred ccCCeeCCCCCEECCCCCCCCHHHHHHHHHcCCcEEEeCcccCCCCC-CCCCCcEEec----------CccccccccCCC
Confidence 56799999999999999999999999999999999999999998875 8999998764 356899988888
Q ss_pred cchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCccCCC
Q psy16199 431 KTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYTELDN 510 (842)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~~~n 510 (842)
..++.|+ +. ++..+ .
T Consensus 71 ~g~~~~~---~~--------------i~~~~-----------------~------------------------------- 85 (294)
T cd04741 71 LGLDYYL---EY--------------IRTIS-----------------D------------------------------- 85 (294)
T ss_pred cCHHHHH---HH--------------HHHHh-----------------h-------------------------------
Confidence 8888777 33 33332 1
Q ss_pred cceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhc-
Q psy16199 511 KKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKA- 589 (842)
Q Consensus 511 ~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~a- 589 (842)
. +.+ .++|+|+||+ +. +++|.++++++++.
T Consensus 86 ---------~-----------------------~~~---------------~~~pvivsi~-g~-~~~~~~~~~~~~~~~ 116 (294)
T cd04741 86 ---------G-----------------------LPG---------------SAKPFFISVT-GS-AEDIAAMYKKIAAHQ 116 (294)
T ss_pred ---------h-----------------------ccc---------------cCCeEEEECC-CC-HHHHHHHHHHHHhhc
Confidence 0 000 0179999997 55 99999999999875
Q ss_pred --CcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh--cHHHHHHHHHHC--CCCEEEE
Q psy16199 590 --GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT--NITDIAKAAYEG--KADGVSA 663 (842)
Q Consensus 590 --gaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~--~~~~~a~~~~~~--G~d~i~v 663 (842)
++|+||||+||||+.+.+ .++++++.+.+++++|++.+++||+||++|+++ ++.++|+.+.+. |+|+|++
T Consensus 117 ~~~ad~ielN~sCPn~~~~~----~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 117 KQFPLAMELNLSCPNVPGKP----PPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred cccccEEEEECCCCCCCCcc----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 699999999999975432 456899999999999999999999999999875 577888888888 9999999
Q ss_pred ecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEE
Q psy16199 664 INTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAV 742 (842)
Q Consensus 664 ~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~V 742 (842)
+||+...+.++++. ..|.+. ....+||+||++++|.++++|+++++.++ ++|||++|||.|++|+.+++++|||+|
T Consensus 193 ~Nt~~~~~~id~~~-~~~~~~--~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~V 269 (294)
T cd04741 193 TNTLGNGLVLDPER-ETVVLK--PKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAV 269 (294)
T ss_pred EccCCccccccCCC-CCcccC--CCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCce
Confidence 99998766677653 334332 23568999999999999999999999985 599999999999999999999999999
Q ss_pred EEehhhhccCchhHHHHHHHHHHHH
Q psy16199 743 QICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 743 qv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
|+||+++++||+++++|+++|++||
T Consensus 270 qv~ta~~~~gp~~~~~i~~~L~~~~ 294 (294)
T cd04741 270 QVGTALGKEGPKVFARIEKELEDIW 294 (294)
T ss_pred eEchhhhhcCchHHHHHHHHHHhhC
Confidence 9999999889999999999999885
No 11
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=3.9e-44 Score=389.18 Aligned_cols=296 Identities=36% Similarity=0.516 Sum_probs=257.9
Q ss_pred cceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeE
Q psy16199 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIE 426 (842)
Q Consensus 347 ~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e 426 (842)
||+++++|++|+||+++||++++.+.+.++...+.|+|++|+||++.+++. +|+.||+.+. ..+++|.+
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~-g~~~pr~~~~----------~~~~~n~~ 69 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPRE-GNPTPRIAET----------PGGMLNAI 69 (301)
T ss_pred CCceEECCEECCCCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCC-CCCCCcEEec----------CCceeecC
Confidence 478899999999999999999999999999889999999999999999885 8999999864 25799998
Q ss_pred eecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCc
Q psy16199 427 LISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYT 506 (842)
Q Consensus 427 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~ 506 (842)
.+++..++.|+ +. +...+ +
T Consensus 70 g~~~~g~~~~~---~~--------------~~~~~-----------------~--------------------------- 88 (301)
T PRK07259 70 GLQNPGVDAFI---EE--------------ELPWL-----------------E--------------------------- 88 (301)
T ss_pred CCCCcCHHHHH---HH--------------HHHHH-----------------h---------------------------
Confidence 88888888887 33 22211 0
Q ss_pred cCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHH
Q psy16199 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKT 586 (842)
Q Consensus 507 ~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~ 586 (842)
+ . +.|+|+||+ |+++++|.++++++
T Consensus 89 -------------~-----------------------~------------------~~p~i~si~-g~~~~~~~~~a~~~ 113 (301)
T PRK07259 89 -------------E-----------------------F------------------DTPIIANVA-GSTEEEYAEVAEKL 113 (301)
T ss_pred -------------c-----------------------c------------------CCcEEEEec-cCCHHHHHHHHHHH
Confidence 0 0 179999996 68999999999999
Q ss_pred hhcC-cCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEec
Q psy16199 587 EKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAIN 665 (842)
Q Consensus 587 ~~ag-aD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~n 665 (842)
+++| +|+||||+||||.. .+ |..++++++.+.+++++|++.+++||+||++++++++.++++.++++|+|+|+++|
T Consensus 114 ~~aG~~D~iElN~~cP~~~--~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 114 SKAPNVDAIELNISCPNVK--HG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred hccCCcCEEEEECCCCCCC--CC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEc
Confidence 9998 99999999999863 23 77889999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 666 TVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 666 t~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
|+.+. .++++ +..|.++ ...||+||++++|.++++++++++.+ ++|||++|||.|++|+.+++++|||+||+|
T Consensus 191 t~~g~-~~~~~-~~~~~~~----~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 191 TLKGM-AIDIK-TRKPILA----NVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred ccccc-ccccc-cCceeec----CCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 98653 33333 2233321 35789999999999999999999998 799999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 746 SAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 746 ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
|+++. +|+++++++++|+.||+++|+ ++++++|.
T Consensus 264 r~ll~-~P~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 264 TANFY-DPYAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred HHHhc-CcHHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 99997 899999999999999999999 88888775
No 12
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=3.5e-43 Score=385.89 Aligned_cols=302 Identities=21% Similarity=0.244 Sum_probs=244.9
Q ss_pred cceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeE
Q psy16199 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIE 426 (842)
Q Consensus 347 ~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e 426 (842)
+|+++++|++|+||+++||++++.+.++++++.++|||++|+||++.+++ .++.|++.+...++...-++..+++|.+
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 79 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFEEQI--RHEAAELDRHLTHGTESFAEALDYFPEP 79 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCHHHh--hccccccccccccCCCcchhhhhhhhhh
Confidence 57899999999999999999999999999999999999999999997554 4666776554332221122334688886
Q ss_pred eecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCc
Q psy16199 427 LISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYT 506 (842)
Q Consensus 427 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~ 506 (842)
.+++...+.|+ +. ++.++ +
T Consensus 80 gl~n~g~d~~~---~~--------------i~~~~-----------------~--------------------------- 98 (334)
T PRK07565 80 AKFYVGPEEYL---EL--------------IRRAK-----------------E--------------------------- 98 (334)
T ss_pred hccCcCHHHHH---HH--------------HHHHH-----------------H---------------------------
Confidence 66666666666 32 33332 1
Q ss_pred cCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHH
Q psy16199 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKT 586 (842)
Q Consensus 507 ~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~ 586 (842)
. .+.|+|+||+ +.+.++|.++++.+
T Consensus 99 -------------~-----------------------------------------~~~pvi~sI~-g~~~~e~~~~a~~~ 123 (334)
T PRK07565 99 -------------A-----------------------------------------VDIPVIASLN-GSSAGGWVDYARQI 123 (334)
T ss_pred -------------h-----------------------------------------cCCcEEEEec-cCCHHHHHHHHHHH
Confidence 0 0179999997 57899999999999
Q ss_pred hhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecC
Q psy16199 587 EKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINT 666 (842)
Q Consensus 587 ~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt 666 (842)
+++|+|+||||+|||+... ...| ...++.+.++++++++.+++||+||++|+++++.++++.++++|+|+|+++||
T Consensus 124 ~~agad~ielN~scpp~~~-~~~g---~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 124 EQAGADALELNIYYLPTDP-DISG---AEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHcCCCEEEEeCCCCCCCC-CCcc---ccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 9999999999999985432 1112 13346789999999999999999999999889999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEeh
Q psy16199 667 VSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICS 746 (842)
Q Consensus 667 ~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~t 746 (842)
+.. +.++++. ..|. ..+|+||++++|.++++++++++.+ ++|||++|||.|++||.++|++||++|||||
T Consensus 200 ~~~-~~~d~~~-~~~~-------~~~glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t 269 (334)
T PRK07565 200 FYQ-PDIDLET-LEVV-------PGLVLSTPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIAS 269 (334)
T ss_pred cCC-CCcChhh-cccc-------cCCCCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeeh
Confidence 754 2333331 1111 1357999999999999999999988 7999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 747 AVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 747 a~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
+++++||.++.+|+++|++||+++|+ +++|++|.
T Consensus 270 ~~~~~g~~~~~~i~~~L~~~l~~~g~~~i~e~~g~ 304 (334)
T PRK07565 270 ALLRHGPDYIGTILRGLEDWMERHGYESLQQFRGS 304 (334)
T ss_pred HHhhhCcHHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 99999999999999999999999988 87777764
No 13
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=2.8e-42 Score=374.16 Aligned_cols=292 Identities=37% Similarity=0.569 Sum_probs=252.3
Q ss_pred eeecccccCCCcccccCCCCCcHHHHHHhhhcC-CceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEee
Q psy16199 350 VEICGLKFPNPFGLASAPPTTASSMVRRAFENG-WGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELI 428 (842)
Q Consensus 350 ~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G-~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~~ 428 (842)
++++|++|.||+++||++.+ +.+.+++.++.| ||++|+||++.++.. +|++||+.+. ..+++|.+.+
T Consensus 2 ~~~~G~~~~nP~~~aag~~~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~-~~~~p~~~~~----------~~~~~n~~g~ 69 (296)
T cd04740 2 VELAGLRLKNPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLEPRE-GNPPPRVVET----------PGGMLNAIGL 69 (296)
T ss_pred eEECCEEcCCCCEECCCCCC-CHHHHHHHHhcCCceEEEECCcCCCCCC-CCCCCeEEec----------CcceeeecCC
Confidence 57889999999999999998 899999999998 999999999998876 8999998764 2579999777
Q ss_pred cccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCccC
Q psy16199 429 SEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYTEL 508 (842)
Q Consensus 429 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~~ 508 (842)
++..++.|+ +. +...+ +
T Consensus 70 ~~~g~~~~~---~~--------------~~~~~-----------------~----------------------------- 86 (296)
T cd04740 70 QNPGVEAFL---EE--------------LLPWL-----------------R----------------------------- 86 (296)
T ss_pred CCcCHHHHH---HH--------------HHHHh-----------------h-----------------------------
Confidence 777777666 32 22222 0
Q ss_pred CCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhh
Q psy16199 509 DNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEK 588 (842)
Q Consensus 509 ~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~ 588 (842)
+ .+.|+|+||+ +.++++|.++++++++
T Consensus 87 -----------~-----------------------------------------~~~p~ivsi~-g~~~~~~~~~a~~~~~ 113 (296)
T cd04740 87 -----------E-----------------------------------------FGTPVIASIA-GSTVEEFVEVAEKLAD 113 (296)
T ss_pred -----------c-----------------------------------------CCCcEEEEEe-cCCHHHHHHHHHHHHH
Confidence 0 0179999997 5789999999999999
Q ss_pred cCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCC
Q psy16199 589 AGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVS 668 (842)
Q Consensus 589 agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~ 668 (842)
+|+|+||||++||++.. .|..++++++.+.++++++++.+++||++|++|+.+++.++++.++++|+|+|+++||+.
T Consensus 114 ~G~d~iElN~~cP~~~~---~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 114 AGADAIELNISCPNVKG---GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred cCCCEEEEECCCCCCCC---CcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCc
Confidence 99999999999998642 377889999999999999999999999999999998999999999999999999999987
Q ss_pred ccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhh
Q psy16199 669 GLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748 (842)
Q Consensus 669 ~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~ 748 (842)
+. .++.+ ++.|.++ ...||+||++++|.++++++++++.+ ++|||++|||.+++|+.++|++|||+||+||++
T Consensus 191 g~-~~~~~-~~~~~~~----~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 191 GM-AIDIE-TRKPILG----NVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTAN 263 (296)
T ss_pred cc-ccccc-cCceeec----CCcceecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 54 33433 2334332 24689999999999999999999998 799999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 749 QNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 749 l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
++ +|+++.+++++|++||+++|+ +++|++|.
T Consensus 264 l~-~p~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 264 FV-DPEAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred hc-ChHHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 97 899999999999999999999 89888874
No 14
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=100.00 E-value=1.1e-43 Score=384.31 Aligned_cols=288 Identities=39% Similarity=0.592 Sum_probs=222.8
Q ss_pred ceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEe
Q psy16199 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIEL 427 (842)
Q Consensus 348 L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~ 427 (842)
|+++++|++|+||+++||+ ++.+.++++++++.|||++|+||++.++.. +|++||+.+.. ...+++|..-
T Consensus 2 L~~~~~Gl~l~nPi~~asG-~~~~~~~~~~~~~~G~Gavv~ksvt~~~~~-gn~~pr~~~~~--------~~~~~~n~~G 71 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLASG-LDKNGEEIKRLFDAGFGAVVTKSVTPEPRE-GNPEPRIFRLP--------EGESILNSMG 71 (295)
T ss_dssp G-EEETTEEESSSEEE-TT-SSTSSHHHHHHHHHSSSEEEEEEE-SSGB---SSSS-EEEET--------TETEEEE---
T ss_pred ccEEECCEEcCCCcEECCc-CCCCchhhhhhhcCCccEEEeccccccccc-cccCCcEEeec--------cccccccccC
Confidence 7899999999999999987 577789999999999999999999998875 89999997652 2345888855
Q ss_pred ecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCcc
Q psy16199 428 ISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYTE 507 (842)
Q Consensus 428 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~ 507 (842)
++....+.|+ +. +.+..+ .
T Consensus 72 ~~n~g~~~~~---~~-------------~~~~~~-----------------~---------------------------- 90 (295)
T PF01180_consen 72 LPNPGLEYYL---ER-------------LRPILK-----------------E---------------------------- 90 (295)
T ss_dssp S-BSHHHHHH---HH-------------HHHTHH-----------------H----------------------------
T ss_pred CChHHHHHHH---HH-------------HHHHhh-----------------h----------------------------
Confidence 5555555554 22 111111 0
Q ss_pred CCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCC---HhHHHHHHH
Q psy16199 508 LDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYN---KDDWLELSK 584 (842)
Q Consensus 508 ~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~---~e~~~~~a~ 584 (842)
..+ ..+.|+|+|++ +.+ .+||.++++
T Consensus 91 ------------------------------------~~~--------------~~~~pvi~Si~-~~~~~~~~d~~~~a~ 119 (295)
T PF01180_consen 91 ------------------------------------AKK--------------DVDIPVIASIN-GDSEEEIEDWAELAK 119 (295)
T ss_dssp ------------------------------------TTC--------------H-CEEEEEEE--TSSSGHHHHHHHHHH
T ss_pred ------------------------------------ccc--------------ccceeEEEEee-cCCchhHHHHHHHHH
Confidence 000 01179999998 466 899999999
Q ss_pred HHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHH--HHHHHHHHCCCCEEE
Q psy16199 585 KTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNIT--DIAKAAYEGKADGVS 662 (842)
Q Consensus 585 ~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~--~~a~~~~~~G~d~i~ 662 (842)
+++ +|+|+||||+||||+.. +..++++++...++++++++.+++||+|||+|++++.. ..+..+.+.|+++|+
T Consensus 120 ~~~-~~ad~lElN~ScPn~~~----~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 120 RLE-AGADALELNLSCPNVPG----GRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp HHH-HHCSEEEEESTSTTSTT----SGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEE
T ss_pred Hhc-CcCCceEEEeeccCCCC----ccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEE
Confidence 998 69999999999999863 44567889999999999999999999999999888654 456666689999999
Q ss_pred EecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCE
Q psy16199 663 AINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHA 741 (842)
Q Consensus 663 v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~ 741 (842)
++||+...+.+|++.. .|.. ....||+||++++|+++++|+++++.++ ++||||+|||.|++|++++|++||++
T Consensus 195 ~~Nt~~~~~~id~~~~-~~~~----~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~ 269 (295)
T PF01180_consen 195 AINTFGQGDAIDLETR-RPVL----GNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASA 269 (295)
T ss_dssp E---EEEEE-EETTTT-EESS----SGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESE
T ss_pred EecCccCcccccchhc-ceee----ccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCH
Confidence 9999988877887742 2222 2368899999999999999999999985 59999999999999999999999999
Q ss_pred EEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 742 VQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 742 Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
||+||+++++||+++++|+++|++||
T Consensus 270 Vqv~Sal~~~Gp~~~~~i~~~L~~~l 295 (295)
T PF01180_consen 270 VQVCSALIYRGPGVIRRINRELEEWL 295 (295)
T ss_dssp EEESHHHHHHGTTHHHHHHHHHHHHH
T ss_pred heechhhhhcCcHHHHHHHHHHHhhC
Confidence 99999999999999999999999998
No 15
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=100.00 E-value=2.5e-43 Score=384.03 Aligned_cols=265 Identities=27% Similarity=0.348 Sum_probs=228.3
Q ss_pred ccccCCcccccCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccchh
Q psy16199 463 KKLNSDGVSLQNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGYQ 539 (842)
Q Consensus 463 ~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~d 539 (842)
+..+.||||+|+|+||+ ++.+..+.++ +|| +++|||+.||+|||+ |++|++++.+++|+ +||+|.|++
T Consensus 52 Gl~l~NPi~lAsG~~~~-----~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~----~Gl~n~G~~ 122 (335)
T TIGR01036 52 GLKFPNPLGLAAGFDKD-----GEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINR----MGFNNHGAD 122 (335)
T ss_pred CEECCCCcEeCCccCCC-----HHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccC----CCCCChhHH
Confidence 67799999999999999 8999999888 344 999999999999999 89999999999999 999999999
Q ss_pred hhhcCccccccccccccccccccccceEEEeccCC------CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccC
Q psy16199 540 AITFHPETHQAHVTDECTGCTLCLSILIASIMCTY------NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLAC 613 (842)
Q Consensus 540 ai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~------~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~ 613 (842)
......... ..+.|+++|+.... ..+||.++++++.+ +||+||||+||||+++.+.
T Consensus 123 ~~l~~i~~~------------~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~----- 184 (335)
T TIGR01036 123 VLVERLKRA------------RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRD----- 184 (335)
T ss_pred HHHHHHhhc------------cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCccc-----
Confidence 987754321 11268999994221 46889998888876 6999999999999864433
Q ss_pred CCCHHHHHHHHHHHHhhCC-------ccEEEEecCChh--cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCccc
Q psy16199 614 GQDPEMVRNISLWVRSSVK-------IPFFVKLTPNIT--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684 (842)
Q Consensus 614 ~~~~~~~~~ii~~v~~~~~-------~Pv~vKl~p~~~--~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~ 684 (842)
+++++.+.+++++|++.++ +||+||++|+++ ++.++|++++++|+|||+++||+.+... +.. |.
T Consensus 185 ~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~--~~~---~~-- 257 (335)
T TIGR01036 185 LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSL--VQG---PK-- 257 (335)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCcccc--ccC---cc--
Confidence 5999999999999999876 999999999987 7999999999999999999999875422 110 11
Q ss_pred CCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 685 ~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
..+..||+||++++|+++++++++++.++ ++|||++|||.|++|+.++|++||++|||||+++++||.++.+|+++|
T Consensus 258 --~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~~~L 335 (335)
T TIGR01036 258 --NSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIVKEI 335 (335)
T ss_pred --ccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHHhhC
Confidence 12368999999999999999999999875 599999999999999999999999999999999988999999998875
No 16
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=3e-42 Score=378.57 Aligned_cols=273 Identities=29% Similarity=0.332 Sum_probs=235.9
Q ss_pred ccccCCcccccCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccchh
Q psy16199 463 KKLNSDGVSLQNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGYQ 539 (842)
Q Consensus 463 ~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~d 539 (842)
+..+.|||++|+|+|++ ++.+..+.+. +|+ +++|||+.||.|||+ |+++++++.+++|+ +||+|.|++
T Consensus 55 Gl~l~nPi~~AsG~~~~-----~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~----~gl~n~g~~ 125 (344)
T PRK05286 55 GLTFPNPVGLAAGFDKN-----GEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR----MGFNNDGAD 125 (344)
T ss_pred CEECCCCCEECCCCCCC-----hHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC----CCCCCHhHH
Confidence 56799999999999999 8999998877 555 999999999999998 89999998999999 999999999
Q ss_pred hhhcCccccccccccccccccccccceEEEeccC------CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccC
Q psy16199 540 AITFHPETHQAHVTDECTGCTLCLSILIASIMCT------YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLAC 613 (842)
Q Consensus 540 ai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g------~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~ 613 (842)
......+... .+.|+|+||++. .+.+||.++++++.+ +||+||+|+||||..+.+ .
T Consensus 126 ~~~~~l~~~~------------~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~-----~ 187 (344)
T PRK05286 126 ALAERLKKAY------------RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLR-----D 187 (344)
T ss_pred HHHHHHHHhc------------CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcc-----c
Confidence 8877544211 237999999742 156899999999876 799999999999875322 2
Q ss_pred CCCHHHHHHHHHHHHhhCC-----ccEEEEecCChh--cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCC
Q psy16199 614 GQDPEMVRNISLWVRSSVK-----IPFFVKLTPNIT--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTK 686 (842)
Q Consensus 614 ~~~~~~~~~ii~~v~~~~~-----~Pv~vKl~p~~~--~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~ 686 (842)
+++++.+.+++++|++.++ +||+||++|+++ ++.++|++++++|+|+|+++||+....++ . .+.
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~--~---~~~---- 258 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGL--K---GLP---- 258 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccc--c---ccc----
Confidence 6999999999999999987 999999999877 68999999999999999999998654311 1 111
Q ss_pred CccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHH
Q psy16199 687 KLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQT 765 (842)
Q Consensus 687 ~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~ 765 (842)
.....||+||++++|.++++++++++.++ ++|||++|||.|++|+.+++++||++|||||+++++||+++.+|+++|++
T Consensus 259 ~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~ 338 (344)
T PRK05286 259 NADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLAR 338 (344)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 12357899999999999999999999884 59999999999999999999999999999999998899999999999999
Q ss_pred HHHhcC
Q psy16199 766 LLYLKS 771 (842)
Q Consensus 766 ~m~~~g 771 (842)
||+++|
T Consensus 339 ~l~~~g 344 (344)
T PRK05286 339 LLRRDG 344 (344)
T ss_pred HHHhcC
Confidence 998865
No 17
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=1.8e-41 Score=368.27 Aligned_cols=295 Identities=36% Similarity=0.549 Sum_probs=252.0
Q ss_pred ceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEe
Q psy16199 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIEL 427 (842)
Q Consensus 348 L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~ 427 (842)
|++++.|++|+||+++|+++++++.+.++...+.|+|++|+||++.++.. +|++||+.+. ..+++|.+-
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~-gn~~pr~~~~----------~~~~~n~~g 69 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRP-GYRNPTIVET----------PCGMLNAIG 69 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCCCHHHHHHHHHcCCcEEEeCcccccccc-CCCCCeEEec----------ccHHhhhcc
Confidence 46788999999999999999999999999999999999999999999886 8999999763 246888866
Q ss_pred ecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCcc
Q psy16199 428 ISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYTE 507 (842)
Q Consensus 428 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~ 507 (842)
++....+.|+ +. ++..+ +
T Consensus 70 l~~~g~~~~~---~~--------------~~~~~-----------------~---------------------------- 87 (300)
T TIGR01037 70 LQNPGVEAFL---EE--------------LKPVR-----------------E---------------------------- 87 (300)
T ss_pred CCCcCHHHHH---HH--------------HHHHh-----------------c----------------------------
Confidence 6666666665 22 11111 0
Q ss_pred CCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHh
Q psy16199 508 LDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTE 587 (842)
Q Consensus 508 ~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~ 587 (842)
+ + +.|+++||+ |.++++|.++++.++
T Consensus 88 ------------~-----------------------~------------------~~pl~~qi~-g~~~~~~~~~a~~~~ 113 (300)
T TIGR01037 88 ------------E-----------------------F------------------PTPLIASVY-GSSVEEFAEVAEKLE 113 (300)
T ss_pred ------------c-----------------------C------------------CCcEEEEee-cCCHHHHHHHHHHHH
Confidence 0 0 168999996 689999999999998
Q ss_pred hc--CcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEec
Q psy16199 588 KA--GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAIN 665 (842)
Q Consensus 588 ~a--gaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~n 665 (842)
++ ++|+||||+|||+.. ++|..++++++.+.++++++++.+++||+||++++.++..++++.++++|+|+|+++|
T Consensus 114 ~~~~~~d~ielN~~cP~~~---~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 114 KAPPYVDAYELNLSCPHVK---GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred hccCccCEEEEECCCCCCC---CCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 76 399999999999864 4688899999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 666 TVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 666 t~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
|+.+. .+++. +..|.+ .+..||+||++++|+++++++++++.+ ++|||++|||.|++|+.+++++|||+||+|
T Consensus 191 t~~~~-~~~~~-~~~~~~----~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 191 TLRGM-KIDIK-TGKPIL----ANKTGGLSGPAIKPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred cCCcc-ccccc-cCceee----CCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 98753 23332 223332 134689999999999999999999998 699999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 746 SAVQNQDFTVVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 746 ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
|+++.+ |+++.+++++|++||+++|+ +++|++|+
T Consensus 264 r~~l~~-p~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 264 TAVYYR-GFAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred HHHhcC-chHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 999965 79999999999999999999 89888875
No 18
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=2e-39 Score=354.42 Aligned_cols=278 Identities=27% Similarity=0.368 Sum_probs=227.1
Q ss_pred ccccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCccee
Q psy16199 344 DLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFL 423 (842)
Q Consensus 344 ~~~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 423 (842)
+..+|+++++|++|+||+++||+ ++.+.+.+++..++|||++|+||++.+++. +|+.||+... |+..|++
T Consensus 35 ~~~~L~~~~~Gl~l~nPi~~AsG-~~~~~~~~~~~~~~G~Gavv~ktit~~~~~-gn~~pr~~~~--------~~~~~~~ 104 (327)
T cd04738 35 DDPRLEVEVFGLTFPNPVGLAAG-FDKNAEAIDALLALGFGFVEVGTVTPRPQP-GNPKPRLFRL--------PEDEALI 104 (327)
T ss_pred CCCCcceEECCEECCCCCEeCcC-CCCCHHHHHHHHHCCCcEEEEeccCCCCCC-CCCCCCEEEc--------cCcccee
Confidence 34578999999999999999988 567889999999999999999999998775 8999998653 2335788
Q ss_pred eeEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccc
Q psy16199 424 NIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVT 503 (842)
Q Consensus 424 n~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt 503 (842)
|.+.++....+.|+ .. ++..+
T Consensus 105 n~~g~~n~g~~~~~---~~--------------l~~~~------------------------------------------ 125 (327)
T cd04738 105 NRMGFNNDGADAVA---KR--------------LKKRR------------------------------------------ 125 (327)
T ss_pred ecCCCCCccHHHHH---HH--------------HHHhc------------------------------------------
Confidence 88444444444443 11 11111
Q ss_pred cCccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCC-------H
Q psy16199 504 NYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYN-------K 576 (842)
Q Consensus 504 ~~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~-------~ 576 (842)
. .+.|+|+||++ .+ .
T Consensus 126 ----------------------------------------~-----------------~~~plivsi~g-~~~~~~~~~~ 147 (327)
T cd04738 126 ----------------------------------------P-----------------RGGPLGVNIGK-NKDTPLEDAV 147 (327)
T ss_pred ----------------------------------------c-----------------CCCeEEEEEeC-CCCCcccccH
Confidence 0 01799999964 43 5
Q ss_pred hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-----ccEEEEecCChh--cHHHH
Q psy16199 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK-----IPFFVKLTPNIT--NITDI 649 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-----~Pv~vKl~p~~~--~~~~~ 649 (842)
++|.++++++.+ ++|+||||+||||..+.+ .+++++.+.+++++|++.++ +||+||++|+++ ++.++
T Consensus 148 ~d~~~~~~~~~~-~ad~ielN~scP~~~g~~-----~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~i 221 (327)
T cd04738 148 EDYVIGVRKLGP-YADYLVVNVSSPNTPGLR-----DLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDI 221 (327)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCCCccc-----cccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHH
Confidence 788888888865 699999999999875322 26999999999999999886 999999999887 88999
Q ss_pred HHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCH
Q psy16199 650 AKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSA 728 (842)
Q Consensus 650 a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~ 728 (842)
+++++++|+|+|+++||+.+..... .|. .....||+||++++|.++++++++++.++ ++|||++|||.|+
T Consensus 222 a~~l~~aGad~I~~~n~~~~~~~~~-----~~~----~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~ 292 (327)
T cd04738 222 ADVALEHGVDGIIATNTTISRPGLL-----RSP----LANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSG 292 (327)
T ss_pred HHHHHHcCCcEEEEECCcccccccc-----ccc----ccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCH
Confidence 9999999999999999987643211 121 23457899999999999999999999985 5999999999999
Q ss_pred HHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 729 DVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 729 ~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
+|+.+++++|||+|||||+++++||+++.+|+++|
T Consensus 293 ~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~~l 327 (327)
T cd04738 293 EDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKREL 327 (327)
T ss_pred HHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHhcC
Confidence 99999999999999999999988999999998875
No 19
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=100.00 E-value=1.2e-38 Score=344.90 Aligned_cols=286 Identities=38% Similarity=0.559 Sum_probs=238.8
Q ss_pred eeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEeec
Q psy16199 350 VEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELIS 429 (842)
Q Consensus 350 ~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~~s 429 (842)
++++|++|+||+++||++.+.+.+.++.+.++|||++|+||++.++.. +|++||+.+...... +.+...+++|.+.++
T Consensus 1 ~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~-~n~~pr~~~~~~~~~-~~~~~~~~~n~~g~~ 78 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRP-GNPLPRVARLPPEGE-SYPEQLGILNSFGLP 78 (289)
T ss_pred CeECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCC-CCCCCCEEEeccccc-cCcccceEeecCCCC
Confidence 357899999999999999999999999999999999999999998775 899999987532212 335568899998788
Q ss_pred ccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCccCC
Q psy16199 430 EKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYTELD 509 (842)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~~~ 509 (842)
+...++|+ .. +...+ +
T Consensus 79 ~~g~~~~~---~~--------------i~~~~-----------------~------------------------------ 94 (289)
T cd02810 79 NLGLDVWL---QD--------------IAKAK-----------------K------------------------------ 94 (289)
T ss_pred CcCHHHHH---HH--------------HHHHH-----------------h------------------------------
Confidence 88777777 33 22222 1
Q ss_pred CcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhc
Q psy16199 510 NKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKA 589 (842)
Q Consensus 510 n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~a 589 (842)
. .. +.|+|+||+ +.++++|.+++++++++
T Consensus 95 ----------~-----------------------~~-----------------~~pvi~si~-g~~~~~~~~~a~~~~~~ 123 (289)
T cd02810 95 ----------E-----------------------FP-----------------GQPLIASVG-GSSKEDYVELARKIERA 123 (289)
T ss_pred ----------c-----------------------cC-----------------CCeEEEEec-cCCHHHHHHHHHHHHHh
Confidence 0 01 179999996 57899999999999999
Q ss_pred CcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh--cHHHHHHHHHHCCCCEEEEecCC
Q psy16199 590 GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT--NITDIAKAAYEGKADGVSAINTV 667 (842)
Q Consensus 590 gaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~--~~~~~a~~~~~~G~d~i~v~nt~ 667 (842)
|+|+||||+|||+.... ..++++++.+.++++++++.+++||++|++++++ ++.++++.++++|+|+|+++||+
T Consensus 124 G~d~ielN~~cP~~~~~----~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 124 GAKALELNLSCPNVGGG----RQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCCEEEEEcCCCCCCCC----cccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 99999999999986543 3367899999999999999999999999999877 78999999999999999999998
Q ss_pred CccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEeh
Q psy16199 668 SGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICS 746 (842)
Q Consensus 668 ~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~t 746 (842)
.+.... ... ..| .....++|+||++++|.++++++++++.++ ++|||++|||.|++|+.+++++||++||++|
T Consensus 200 ~~~~~~-~~~-~~~----~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 200 SGRVVD-LKT-VGP----GPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred Ccccee-ccc-Ccc----ccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcH
Confidence 764221 111 111 123457899999999999999999999986 6999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHH
Q psy16199 747 AVQNQDFTVVDDYITG 762 (842)
Q Consensus 747 a~l~~gp~~~~~i~~~ 762 (842)
+++.+||+++.+++++
T Consensus 274 a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 274 ALMWDGPDVIRKIKKE 289 (289)
T ss_pred HHHhcCccHHHHHhcC
Confidence 9998889999998753
No 20
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2.8e-36 Score=368.02 Aligned_cols=291 Identities=27% Similarity=0.375 Sum_probs=242.9
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
||+|||||+. .+||++.||||.|++|+++++++++++++.||+|++|+.++ ++++++++...+||+||||||+..|+.
T Consensus 329 G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 329 GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 9999999996 89999999999999999999999999999999999999999 899998887777999999999977999
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCC-cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~-kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
+++| | .+.+||+++.+||...+.... .+. +.........+ +|+|||||++|+|+|..+.++|++ ||+++|++.
T Consensus 408 l~Ip-G-~dl~GV~~a~dfL~~~~~~~~--~~~-~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~-Vtlv~rr~~ 481 (944)
T PRK12779 408 MNVP-G-EHLLGVMSANEFLTRVNLMRG--LDD-DYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN-VTIVYRRTK 481 (944)
T ss_pred CCCC-C-CcCcCcEEHHHHHHHHHhhcc--ccc-cccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEEecCc
Confidence 9999 6 578999999999987654321 110 00001122234 499999999999999999999985 999999976
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEcc--CCcEEEEEEEee---cccCCCCeec-cCCceEEEECCEEEEccccC
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVK--DNKIAGMQFNRT---EQNEKGEWVE-DEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~--~~~v~~V~~~~~---~~~~~G~~~~-~~g~~~~i~~D~Vi~a~G~~ 256 (842)
..+|..++++..+.++||+++++..++++..+ +++++++++... +.+++|++.+ .+|++.+++||.||+|+|+.
T Consensus 482 ~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 482 SEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred ccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 67888888888888999999999999999743 236777776543 3456786532 36777889999999999999
Q ss_pred cCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy16199 257 LLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 257 ~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
|+..+.....|++++++|.|.+|+.+++||.|+|||+|||+.++.+++.|+.+|+.||.+|++||.
T Consensus 562 -p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 562 -ANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred -CChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 555554433378889999999997679999999999999999888999999999999999999985
No 21
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-35 Score=339.44 Aligned_cols=291 Identities=30% Similarity=0.422 Sum_probs=240.7
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHH-HHHHHHHHHHhcCcEEEeceeeccccceecccc-ccCCCEEEEccCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFD-AVNFEVELVKDLGVKIECERSLSTRDITIEKLR-KDGYTAIFIGIGKPNA 101 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~-~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~-~~~yd~lVlAtGs~~~ 101 (842)
|++|+|||+. .+||++.+++|.++++.+ ++++..++++++||+|++++.++ ++++++++. ...||+||||||++.|
T Consensus 163 G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-~~v~~~~~~~~~~~d~viiAtGa~~~ 241 (464)
T PRK12831 163 GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-KTVTIDELLEEEGFDAVFIGSGAGLP 241 (464)
T ss_pred CCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-CcCCHHHHHhccCCCEEEEeCCCCCC
Confidence 8999999996 899999999999998886 88889999999999999999887 677766653 3469999999999658
Q ss_pred CCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 102 NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 102 ~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+.+++| | .+.++|+++.+|+...+... .+|..++. ....+++|+|||||++|+|+|..+.+.|++ ||+++|++
T Consensus 242 ~~l~ip-G-~~~~gV~~~~~~l~~~~~~~--~~~~~~~~--~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~-Vtlv~r~~ 314 (464)
T PRK12831 242 KFMGIP-G-ENLNGVFSANEFLTRVNLMK--AYKPEYDT--PIKVGKKVAVVGGGNVAMDAARTALRLGAE-VHIVYRRS 314 (464)
T ss_pred CCCCCC-C-cCCcCcEEHHHHHHHHHhcc--cccccccC--cccCCCeEEEECCcHHHHHHHHHHHHcCCE-EEEEeecC
Confidence 889998 6 47789999999998754321 12222221 122345599999999999999999999986 99999987
Q ss_pred CccccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeec---ccCCCCee--ccCCceEEEECCEEEEcccc
Q psy16199 182 CTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTE---QNEKGEWV--EDEEQRIKLKANYIISAFGS 255 (842)
Q Consensus 182 ~~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~---~~~~G~~~--~~~g~~~~i~~D~Vi~a~G~ 255 (842)
...++....++..+.++||++++++.++++.. +++++++|++...+ .+++|+.. .++|++.++++|.||+|+|+
T Consensus 315 ~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 315 EEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred cccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 66788888888888899999999999999974 45788888876543 35567653 34677778999999999999
Q ss_pred CcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 256 TLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 256 ~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
. |+..++....|++++++|++.+|+.+++||.|+|||+||++.++.+++.|+.+|+.||.+|++||++
T Consensus 395 ~-p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 395 S-PNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred C-CChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 6777776633888998999999965599999999999999988889999999999999999999965
No 22
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=356.31 Aligned_cols=295 Identities=29% Similarity=0.453 Sum_probs=247.9
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceecccc-ccCCCEEEEccCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLR-KDGYTAIFIGIGKPNAN 102 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~-~~~yd~lVlAtGs~~~~ 102 (842)
||+|+|||+. .+||+++++||.++++.++++..+++++++||+|++++.++ ++++++++. ..+||+||||||+..++
T Consensus 453 G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 453 GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-KTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-CccCHHHHhhccCCCEEEEecCCCCCC
Confidence 9999999996 89999999999999999999999999999999999999887 787777654 35699999999997789
Q ss_pred CCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 103 VIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 103 ~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
.+++| | .+.++|+++.+||..++... ...|.+|+. ....+++|+|||||++|+|+|..+.++|++.|++++|+..
T Consensus 532 ~l~Ip-G-~~l~gV~~a~~fL~~~~~~~-~~~~~~~~~--~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~ 606 (1006)
T PRK12775 532 FLGIP-G-EFAGQVYSANEFLTRVNLMG-GDKFPFLDT--PISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSE 606 (1006)
T ss_pred CCCCC-C-cCCCCcEEHHHHHHHHHhcC-ccccccccC--CccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCc
Confidence 99999 6 47789999999998876421 112344443 1123445999999999999999999999988999999887
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeec---ccCCCCeec-cCCceEEEECCEEEEccccCc
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTE---QNEKGEWVE-DEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~---~~~~G~~~~-~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
..++....+++.+.++||++++++.++++.. +++++++|++.+.+ .+++|++.+ .+|++.+++||.||+|+|+.
T Consensus 607 ~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~- 685 (1006)
T PRK12775 607 AEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK- 685 (1006)
T ss_pred ccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC-
Confidence 7888888888888999999999999999964 46789999887543 356676643 35666789999999999999
Q ss_pred CChhHHhhcCCcccCCCCCeeeCC----CCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16199 258 LDNDVLEAIKPVKLDKYGYPEVNY----TTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKN 326 (842)
Q Consensus 258 ~~~~l~~~l~gl~~~~~G~i~vd~----~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~~ 326 (842)
|+..+.....|++++++|.|.+|+ .+++||+|+|||+||++.++.+++.|+.+|+.||.+|+++|.+..
T Consensus 686 p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 686 ANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666666554478888899999995 478999999999999998888999999999999999999998743
No 23
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.3e-34 Score=351.66 Aligned_cols=291 Identities=29% Similarity=0.437 Sum_probs=242.6
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
||+|+|||+. .+||++.++||.+++|.+++++.+++++++||+|++++.++ ++++++++...+||+||||||++.++.
T Consensus 454 G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-~~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 454 GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-KTITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred CCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-CcCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 9999999996 89999999999999999999999999999999999999998 888888776677999999999966888
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT 183 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~ 183 (842)
+++| | .+.+||+++.+|+...+... .+|..++. .....++|||||||++|+|+|..+.+.|+++||+++|++..
T Consensus 533 l~ip-G-~~~~gV~~~~~~l~~~~~~~--~~~~~~~~--~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~ 606 (752)
T PRK12778 533 MNIP-G-ENSNGVMSSNEYLTRVNLMD--AASPDSDT--PIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE 606 (752)
T ss_pred CCCC-C-CCCCCcEEHHHHHHHHhhcc--cccccccC--cccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence 9998 6 57789999999998665321 11211221 11233459999999999999999999998779999998766
Q ss_pred cccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeec---ccCCCCee--ccCCceEEEECCEEEEccccCc
Q psy16199 184 NIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTE---QNEKGEWV--EDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 184 ~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~---~~~~G~~~--~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
.++....++..+.++||++++++.+.++.. +++++++|++.... .+++|+.. ..+|++.+++||.||+|+|+.
T Consensus 607 ~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~- 685 (752)
T PRK12778 607 EMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS- 685 (752)
T ss_pred cCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC-
Confidence 778887788888899999999999999864 45778888876542 34567653 346777789999999999999
Q ss_pred CChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 258 LDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 258 ~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
|+..+.....|++++++|+|.+|+ +++|+.|+|||+||++.++.+++.|+.+|+.||.+|+++|++
T Consensus 686 p~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 686 PNPLVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCccccccccCceECCCCCEEeCC-CCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566666554478899999999994 679999999999999988889999999999999999999964
No 24
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.1e-33 Score=324.02 Aligned_cols=287 Identities=29% Similarity=0.427 Sum_probs=235.1
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
|++|+|||+. .+||++.+++|.++++.++++...+++++.||+|++++.++ ++++++++. ..||+||||||+..|+.
T Consensus 156 G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-~~v~~~~~~-~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 156 GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-KTATLEELF-SQYDAVFIGTGAGLPKL 233 (449)
T ss_pred CCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC-CcCCHHHHH-hhCCEEEEeCCCCCCCc
Confidence 8999999996 89999999999999999999999999999999999999887 777776553 35999999999955888
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT 183 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~ 183 (842)
+++| | .+.++|+++.+|+........ .-++.++. ....+++|+|||||++|+|+|..+.+.|++ ||+++|++..
T Consensus 234 ~~ip-G-~~~~gv~~~~~~l~~~~~~~~-~~~~~~~~--~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~-Vtlv~~~~~~ 307 (449)
T TIGR01316 234 MNIP-G-EELCGVYSANDFLTRANLMKA-YEFPHADT--PVYAGKSVVVIGGGNTAVDSARTALRLGAE-VHCLYRRTRE 307 (449)
T ss_pred CCCC-C-CCCCCcEEHHHHHHHHhhccc-ccccccCC--cccCCCeEEEECCCHHHHHHHHHHHHcCCE-EEEEeecCcc
Confidence 8898 6 467899999888876443110 00001111 012334599999999999999999999986 9999999766
Q ss_pred cccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeec---ccCCCCe--eccCCceEEEECCEEEEccccCc
Q psy16199 184 NIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTE---QNEKGEW--VEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 184 ~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~---~~~~G~~--~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
.++....+++.+.++||++++++.++++.. +++++++|++...+ .+++|+. .+.++++.++++|.||+|+|+.
T Consensus 308 ~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~- 386 (449)
T TIGR01316 308 DMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG- 386 (449)
T ss_pred cCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC-
Confidence 777788888888999999999999999974 35678888876432 3456654 3456677789999999999999
Q ss_pred CChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy16199 258 LDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYI 322 (842)
Q Consensus 258 ~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L 322 (842)
|+..+++.+ |++++++|+|.|| ++++|+.|+|||+||++.++.++..|+.+|+.||.+|++||
T Consensus 387 p~~~~l~~~-gl~~~~~G~i~vd-~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 387 SNPIMAETT-RLKTSERGTIVVD-EDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCchhhhcc-CcccCCCCeEEeC-CCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 677777776 7999999999999 57999999999999999888899999999999999999875
No 25
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=2.6e-33 Score=333.69 Aligned_cols=283 Identities=28% Similarity=0.467 Sum_probs=237.9
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
||+|+|||+. .+||++++++|.++++.+++++.+++++++|+++++++.++ .+++++++.. .||+||||||++.++.
T Consensus 216 G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~dv~~~~~~~-~~DaVilAtGa~~~~~ 293 (652)
T PRK12814 216 GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RDITLEELQK-EFDAVLLAVGAQKASK 293 (652)
T ss_pred CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-CccCHHHHHh-hcCEEEEEcCCCCCCC
Confidence 8999999996 89999999999999999999999999999999999999876 6666655443 4999999999986677
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT 183 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~ 183 (842)
+++| | .+.+++++..++++...... ....+++|+|||||++|+|+|..+.+.|+++||+++|++..
T Consensus 294 ~~ip-G-~~~~gv~~~~~~l~~~~~~~------------~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~ 359 (652)
T PRK12814 294 MGIP-G-EELPGVISGIDFLRNVALGT------------ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE 359 (652)
T ss_pred CCCC-C-cCcCCcEeHHHHHHHhhcCC------------cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence 8888 5 47789999888887654321 12334559999999999999999999998889999999876
Q ss_pred cccCCHHHHHHHHhcCcEEecCCCceEEEccCCcE--EEEEEEeecccCCCCee--ccCCceEEEECCEEEEccccCcCC
Q psy16199 184 NIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKI--AGMQFNRTEQNEKGEWV--EDEEQRIKLKANYIISAFGSTLLD 259 (842)
Q Consensus 184 ~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v--~~V~~~~~~~~~~G~~~--~~~g~~~~i~~D~Vi~a~G~~~~~ 259 (842)
.++..+.++..+.++||+|++++.+.++...++++ +.+.+..++.+++|+.. ..+|++.++++|.||+++|+. |+
T Consensus 360 ~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~-p~ 438 (652)
T PRK12814 360 EMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ-VD 438 (652)
T ss_pred cCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc-CC
Confidence 78888888888889999999999999997545543 33444555556677653 456777789999999999999 67
Q ss_pred hhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 260 NDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 260 ~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
..+++.. |++++++|++.+|+.+++|+.|+|||+||++.++.++..|+.+|+.||.+|+++|++.
T Consensus 439 ~~ll~~~-gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 439 PPIAEAA-GIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred ccccccc-CccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777765 7999989999999778999999999999999888899999999999999999999864
No 26
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=7.2e-33 Score=331.37 Aligned_cols=293 Identities=27% Similarity=0.410 Sum_probs=239.0
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
|++|+|||+. .+||++.+++|.++++++++++..++++++|++|++++.++ .+++++++. ..||+||+|||+..++.
T Consensus 350 G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~i~~~~~~-~~~DavilAtGa~~~~~ 427 (654)
T PRK12769 350 GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVG-KDISLESLL-EDYDAVFVGVGTYRSMK 427 (654)
T ss_pred CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeC-CcCCHHHHH-hcCCEEEEeCCCCCCCC
Confidence 9999999996 89999999999999999999999999999999999999887 666666543 35999999999987778
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCC-cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~-kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
+++| | .+.+|++++.+|+....... ...+..++. ......+ +|+|||||++|+|+|..+.+.|+++||+++|++.
T Consensus 428 l~i~-g-~~~~Gv~~a~~~l~~~~~~~-~~~~~~~~~-~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 428 AGLP-N-EDAPGVYDALPFLIANTKQV-MGLEELPEE-PFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCCC-C-CCCCCeEEhHHHHHHHHhhh-ccCcccccc-ccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 8888 5 46789999888875332210 011111111 1112334 4999999999999999999999988999999876
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeec---ccCCCCee--ccCCceEEEECCEEEEccccC
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTE---QNEKGEWV--EDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~---~~~~G~~~--~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
..++..+.+++.+.++||++++++.++++.. +++++++|++...+ .+++|++. +++|++.++++|.||+|+|+.
T Consensus 504 ~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~ 583 (654)
T PRK12769 504 ANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN 583 (654)
T ss_pred CCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence 6788888889889999999999999999864 46788888876543 35678753 457888899999999999999
Q ss_pred cCChhHHhhcCCcccCCCCCeeeCCC---CCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 257 LLDNDVLEAIKPVKLDKYGYPEVNYT---TMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 257 ~~~~~l~~~l~gl~~~~~G~i~vd~~---~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
|++..+++.+ |++++++|.|++|+. +++|++|+|||+||++.++.+++.|+.+|+.||.+|++||..
T Consensus 584 p~~~~~~~~~-gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 584 PHGMPWLESH-GVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCcccccccc-CCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 5445566666 899999999999853 489999999999999988889999999999999999999853
No 27
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.5e-32 Score=316.87 Aligned_cols=289 Identities=25% Similarity=0.324 Sum_probs=230.9
Q ss_pred eecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCC
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNAN 102 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~ 102 (842)
.|++|+|||+. .+||++++++|.++++.++++...+++.+.||++++++.+. .+++.++. ...||+||||||+..++
T Consensus 165 ~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-~~~~~~~~-~~~~d~vvlAtGa~~~~ 242 (471)
T PRK12810 165 AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG-KDITAEEL-LAEYDAVFLGTGAYKPR 242 (471)
T ss_pred CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC-CcCCHHHH-HhhCCEEEEecCCCCCC
Confidence 39999999996 89999999999999999999999999999999999999886 45544443 24699999999998788
Q ss_pred CCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 103 VIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 103 ~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
.+++| | .+.+||++..+|+......... . ..+.. .....++|+|||||++|+|+|..+.+.|+++||++.+..
T Consensus 243 ~l~ip-G-~~~~gV~~~~~~l~~~~~~~~~-~-~~~~~--~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~- 315 (471)
T PRK12810 243 DLGIP-G-RDLDGVHFAMDFLIQNTRRVLG-D-ETEPF--ISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP- 315 (471)
T ss_pred cCCCC-C-ccCCCcEEHHHHHHHHHhhhcc-c-ccccc--ccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC-
Confidence 88898 6 4678999988888765431100 0 00110 122344599999999999999999999987899766543
Q ss_pred ccccCCHH-------------HHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEE
Q psy16199 183 TNIRAVPE-------------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYI 249 (842)
Q Consensus 183 ~~~~~~~~-------------~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~V 249 (842)
++..+. ++..+.++||++++++.++++..+++++++|++..... .+|.+.+.++++.++++|.|
T Consensus 316 --~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~-~~g~~~~~~g~~~~i~~D~V 392 (471)
T PRK12810 316 --MPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL-GEGDFEPVEGSEFVLPADLV 392 (471)
T ss_pred --CCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe-cCCCccccCCceEEEECCEE
Confidence 232222 56677889999999999999986678999898876543 45544455677788999999
Q ss_pred EEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 250 ISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 250 i~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
|+|+|++|+...|++.+ |++++++|++++|+++++|+.|+|||+||++.++.++..|+.+|+.||.+|+++|.+.
T Consensus 393 I~A~G~~p~~~~l~~~~-gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 393 LLAMGFTGPEAGLLAQF-GVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred EECcCcCCCchhhcccc-CcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999995445677776 7889999999998668999999999999999888889999999999999999999764
No 28
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2.2e-32 Score=314.74 Aligned_cols=288 Identities=35% Similarity=0.505 Sum_probs=235.4
Q ss_pred eecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCC
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNAN 102 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~ 102 (842)
.|++|+|||+. .+||++.+++|.++++.+++++..+++++.|+++++++.++ ++++++++. ..||+||||||+..++
T Consensus 162 ~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-~~v~~~~~~-~~~d~vvlAtGa~~~~ 239 (457)
T PRK11749 162 KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVG-RDITLDELR-AGYDAVFIGTGAGLPR 239 (457)
T ss_pred CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC-CccCHHHHH-hhCCEEEEccCCCCCC
Confidence 38999999997 89999999999999999999999999999999999999886 566665544 5699999999997678
Q ss_pred CCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 103 VIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 103 ~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
.+++| |. +.++++++.+++...... |.. ......++|+|||||++|+|+|..|.+.|+++||++++++.
T Consensus 240 ~~~i~-G~-~~~gv~~~~~~l~~~~~~--------~~~-~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 240 FLGIP-GE-NLGGVYSAVDFLTRVNQA--------VAD-YDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CCCCC-Cc-cCCCcEEHHHHHHHHhhc--------ccc-ccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 88888 63 667899998888775432 000 00123455999999999999999999999877999999876
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEee---cccCCCCee-ccCCceEEEECCEEEEccccCcC
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRT---EQNEKGEWV-EDEEQRIKLKANYIISAFGSTLL 258 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~---~~~~~G~~~-~~~g~~~~i~~D~Vi~a~G~~~~ 258 (842)
..++..+.+++.+.++||++++++.++++..+++++++|++... ..+.+|++. +.+++..++++|.||+++|++ |
T Consensus 309 ~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~-p 387 (457)
T PRK11749 309 EEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT-P 387 (457)
T ss_pred ccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC-C
Confidence 56777888888889999999999999999755555666776543 234556542 335666789999999999999 5
Q ss_pred ChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 259 DNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 259 ~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
+..+.....|++++++|++.+|+.+++|+.|+|||+||++.++.++..|+.+|+.||.+|+++|++.
T Consensus 388 ~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 388 NPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666654337888999999999658999999999999999877899999999999999999999764
No 29
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=2.5e-32 Score=325.33 Aligned_cols=294 Identities=25% Similarity=0.377 Sum_probs=239.8
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
||+|+|||+. .+||++++++|.++++.++++..+++++++||++++++.++ ++++++++. ..||+||+|||+..++.
T Consensus 333 G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~~~~~~l~-~~~DaV~latGa~~~~~ 410 (639)
T PRK12809 333 GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG-RDITFSDLT-SEYDAVFIGVGTYGMMR 410 (639)
T ss_pred CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC-CcCCHHHHH-hcCCEEEEeCCCCCCCC
Confidence 9999999997 89999999999999999999999999999999999999887 677776543 45999999999997788
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCC-cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~-kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
+++| | .+.+|++++.+|+........ +.- ...........+ +|+|||+|++|+|+|..+.+.|+++||+++|++.
T Consensus 411 ~~i~-g-~~~~gv~~a~~~l~~~~~~~~-~~~-~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 411 ADLP-H-EDAPGVIQALPFLTAHTRQLM-GLP-ESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCCC-C-CccCCcEeHHHHHHHHHHhhc-cCc-cccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 8888 5 577899999888865432110 000 000000112234 4999999999999999999999888999999876
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEee---cccCCCCee--ccCCceEEEECCEEEEccccC
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRT---EQNEKGEWV--EDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~---~~~~~G~~~--~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
..++..++++..+.++||++++++.++++.. ++++++++++... +.+++|++. +.+|++.++++|.||+|+|+.
T Consensus 487 ~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~ 566 (639)
T PRK12809 487 VSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ 566 (639)
T ss_pred ccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCC
Confidence 6788888888888899999999999999964 4577888876543 345678653 457788899999999999999
Q ss_pred cCChhHHhhcCCcccCCCCCeeeCCC---CCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 257 LLDNDVLEAIKPVKLDKYGYPEVNYT---TMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 257 ~~~~~l~~~l~gl~~~~~G~i~vd~~---~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
|++..+++.+ |++++++|++.+|+. +++|+.|+|||+||++.++.+++.|+.+|+.||.+|++||.+.
T Consensus 567 p~~~~~~~~~-gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 567 AHAMPWLQGS-GIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCcccccccc-CcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5455666665 799999999999842 5899999999999999888899999999999999999999764
No 30
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=2.1e-32 Score=328.23 Aligned_cols=277 Identities=30% Similarity=0.445 Sum_probs=228.7
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
||+|+|||+. .+||+++++||.+++|.+++++.++++++.||+|++++.++ ++++++...+||+||||||++.++.
T Consensus 562 G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd---i~le~L~~~gYDaVILATGA~~~~~ 638 (1019)
T PRK09853 562 GHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD---LTVEQLKNEGYDYVVVAIGADKNGG 638 (1019)
T ss_pred CCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeE---EEhhhheeccCCEEEECcCCCCCCC
Confidence 9999999996 89999999999999999999999999999999999998762 3455666667999999999997777
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHc-CCcEEEEEEeecC
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC 182 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~-G~~~Vtlv~r~~~ 182 (842)
+++| |. .++++++.+++...+... .....+++|||||||++|+|+|..+.+. |+++|++++|++.
T Consensus 639 l~Ip-G~--~~gV~saldfL~~~k~~~-----------~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 639 LKLE-GG--NQNVIKALPFLEEYKNKG-----------TALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred CCCC-Cc--cCCceehHHHHHHHhhhc-----------ccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 8887 42 268898888888763211 1123445699999999999999999888 5567999999887
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCee-ccCCceEEEECCEEEEccccCcCChh
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWV-EDEEQRIKLKANYIISAFGSTLLDND 261 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~-~~~g~~~~i~~D~Vi~a~G~~~~~~~ 261 (842)
..++..++++..+.++||++++.+.+.++. .++++......-...+++|+.. ..+++..+++||.||+|+|+. |+.+
T Consensus 705 ~~MPA~~eEle~AleeGVe~~~~~~p~~I~-~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~-Pnte 782 (1019)
T PRK09853 705 QEMPAWREEYEEALEDGVEFKELLNPESFD-ADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ-VDTE 782 (1019)
T ss_pred ccccccHHHHHHHHHcCCEEEeCCceEEEE-cCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc-CChh
Confidence 788889989988889999999999999996 4566543322222334567653 235667789999999999999 6778
Q ss_pred HHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy16199 262 VLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYI 322 (842)
Q Consensus 262 l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L 322 (842)
+++.. |++++++|++.|| ++++|+.|+|||+||++.++.++..|+.+|+.||.+|++.+
T Consensus 783 lle~~-GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 783 LLKAN-GIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred HHHhc-CccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 88776 8999999999998 68999999999999999888999999999999999998754
No 31
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=1.2e-31 Score=308.35 Aligned_cols=292 Identities=27% Similarity=0.404 Sum_probs=235.1
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
|++|+|||+. .+||++++++|.++++.+++++..++++++|+++++++.++ +++++++.. ..||+||+|||+..++.
T Consensus 164 G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~~~~~~~~-~~~D~vilAtGa~~~~~ 241 (467)
T TIGR01318 164 GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG-RDISLDDLL-EDYDAVFLGVGTYRSMR 241 (467)
T ss_pred CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC-CccCHHHHH-hcCCEEEEEeCCCCCCc
Confidence 9999999996 89999999999999999999999999999999999999887 566555543 46999999999996677
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCC-CCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLP-ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~-~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
+++| | .+.+||+++.+|+....... .+....++. ... ...++|+|||+|++|+|+|..+.+.|+++||+++|++.
T Consensus 242 ~~i~-g-~~~~gV~~a~~~l~~~~~~~-~~~~~~~~~-~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 242 GGLP-G-EDAPGVLQALPFLIANTRQL-MGLPESPEE-PLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCCC-C-cCCCCcEEHHHHHHHHHHHh-cCCCccccc-cccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 8898 5 47789999888876432211 111111111 111 22344999999999999999999999877999999886
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEee---cccCCCCee--ccCCceEEEECCEEEEccccC
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRT---EQNEKGEWV--EDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~---~~~~~G~~~--~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
..++..+.++..+.++||++++++.++++.. +++++++|++... +.+++|++. .++|++.+++||.||+++|++
T Consensus 318 ~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 318 ANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred ccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 6788888888889999999999999999964 3567888877543 335567653 356777889999999999999
Q ss_pred cCChhHHhhcCCcccCCCCCeeeCC---CCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy16199 257 LLDNDVLEAIKPVKLDKYGYPEVNY---TTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 257 ~~~~~l~~~l~gl~~~~~G~i~vd~---~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
|....+++.. +++++++|++.+|+ .+++|+.|+|||+||++.++.++..|+.+|+.||.+|+++|.
T Consensus 398 p~~~~~~~~~-gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 398 PHAMPWLAGH-GITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCcccccccc-CccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 5434566655 78889899999994 468999999999999998888889999999999999999983
No 32
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.98 E-value=5.3e-31 Score=318.01 Aligned_cols=276 Identities=29% Similarity=0.450 Sum_probs=227.0
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
||+|+|||+. .+||++.+.+|.+++|.+.+++.++++++.||+|++++. .+++++++...+||+||||||++.+++
T Consensus 560 G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~---~d~~ve~l~~~gYDaVIIATGA~~~~~ 636 (1012)
T TIGR03315 560 GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCS---PDLTVAELKNQGYKYVILAIGAWKHGP 636 (1012)
T ss_pred CCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecc---cceEhhhhhcccccEEEECCCCCCCCC
Confidence 9999999996 899999999999999999999999999999999999853 234455555667999999999997777
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHc-CCcEEEEEEeecC
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC 182 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~-G~~~Vtlv~r~~~ 182 (842)
++++ | ..++++++.++++.+.... .....+++|+|||||++|+|+|..+.+. |+++|++++|+..
T Consensus 637 l~I~-G--~~~~v~~avefL~~~~~~~-----------~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 637 LRLE-G--GGERVLKSLEFLRAFKEGP-----------TINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred CCcC-C--CCcceeeHHHHHHHhhccc-----------cccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 7887 4 2357888888888764421 0123455699999999999999999887 8778999999886
Q ss_pred ccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeec-cCCceEEEECCEEEEccccCcCChh
Q psy16199 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE-DEEQRIKLKANYIISAFGSTLLDND 261 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~-~~g~~~~i~~D~Vi~a~G~~~~~~~ 261 (842)
..++..++++..+.++||++++...+.++. +++++.....-.+.+.+|+... .+|++.+++||.||+|+|+. |+.+
T Consensus 703 ~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~-Pnt~ 779 (1012)
T TIGR03315 703 RYMPASREELEEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ-VDTD 779 (1012)
T ss_pred cccccCHHHHHHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc-CChH
Confidence 678888888888889999999999999986 4555432232233455676543 35777789999999999999 6778
Q ss_pred HHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy16199 262 VLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKY 321 (842)
Q Consensus 262 l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~ 321 (842)
+++.+ |++++++|++.+|+.+++|+.|+|||+|||+.++.++..|+.+|+.||.+|.+.
T Consensus 780 lle~~-GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 780 LLQKN-GIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred HHHhc-CcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 88776 899999999999976699999999999999988899999999999999999754
No 33
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=2e-30 Score=299.21 Aligned_cols=294 Identities=24% Similarity=0.349 Sum_probs=225.4
Q ss_pred eecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCC
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNAN 102 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~ 102 (842)
.|++|+|||+. .+||++.+++|.++++.+++.+..+++++.||++++++.++ ++++.+.. ...||+||+|||++.++
T Consensus 165 ~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~~~~~~~-~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 165 AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG-VDISADEL-KEQFDAVVLAGGATKPR 242 (485)
T ss_pred cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC-CccCHHHH-HhhCCEEEEccCCCCCC
Confidence 38999999997 89999999999999999999999999999999999999886 55544433 34699999999998788
Q ss_pred CCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCC-cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 103 VIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 103 ~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~-kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.+++| | .+.+||++..+|+.......... ..+........+ +|+|||||++|+|+|..+.+.|++.|+++++.+
T Consensus 243 ~l~i~-G-~~~~gV~~~~~~l~~~~~~~~~~---~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 243 DLPIP-G-RELKGIHYAMEFLPSATKALLGK---DFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred cCCCC-C-cCCCCcEeHHHHHHHHhhhhccc---cccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 89998 6 46789999888887654321000 000000111234 499999999999999999999988899998765
Q ss_pred Ccc--------ccCCHH--HHHHHHhc-----CcE-EecCCCceEEEcc-CCcEEEEEEEeec--ccCCCCe--eccCCc
Q psy16199 182 CTN--------IRAVPE--EVQLAWEE-----KCE-FLPFMSPVQVDVK-DNKIAGMQFNRTE--QNEKGEW--VEDEEQ 240 (842)
Q Consensus 182 ~~~--------~~~~~~--~~~~~~~~-----gV~-i~~~~~v~~v~~~-~~~v~~V~~~~~~--~~~~G~~--~~~~g~ 240 (842)
... ++..+. ++..+.++ |+. +++++.+.++..+ ++++++|++...+ .+++|++ +..+|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~ 397 (485)
T TIGR01317 318 KPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGS 397 (485)
T ss_pred CChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCc
Confidence 321 121111 12233333 543 3567888888743 3788888875543 3567875 456777
Q ss_pred eEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHH
Q psy16199 241 RIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 241 ~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~ 320 (842)
..+++||.||+|+|+.+|+..+++.+ |++++++|++.+++++++|+.|+|||+||++.++.++..|+.+|+.||.+|++
T Consensus 398 ~~~i~~D~Vi~AiG~~~p~~~~~~~~-gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 398 EEVFEADLVLLAMGFVGPEQILLDDF-GVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred eEEEECCEEEEccCcCCCcccccccc-CcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999864677787776 88888899997776889999999999999998888899999999999999999
Q ss_pred HHHhc
Q psy16199 321 YIQEK 325 (842)
Q Consensus 321 ~L~~~ 325 (842)
||.+.
T Consensus 477 ~L~g~ 481 (485)
T TIGR01317 477 YLMGS 481 (485)
T ss_pred HHhcC
Confidence 99764
No 34
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.97 E-value=3.2e-29 Score=295.44 Aligned_cols=283 Identities=29% Similarity=0.464 Sum_probs=234.2
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
|++|+|||+. .+||++.+++|.++++.++++...+.++++|+++++++.++ .+++.+.. ..+||+||+|||+..++.
T Consensus 160 G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~-~~~~~~~~-~~~~D~Vi~AtG~~~~~~ 237 (564)
T PRK12771 160 GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG-EDITLEQL-EGEFDAVFVAIGAQLGKR 237 (564)
T ss_pred CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC-CcCCHHHH-HhhCCEEEEeeCCCCCCc
Confidence 8999999996 99999999999999999999999999999999999998774 34433332 235999999999987777
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT 183 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~ 183 (842)
+.++ + .+..|+++..+++...... ......++|+|||+|++|+|+|..+.++|+++|++++|.+..
T Consensus 238 ~~i~-g-~~~~gv~~~~~~l~~~~~~------------~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~ 303 (564)
T PRK12771 238 LPIP-G-EDAAGVLDAVDFLRAVGEG------------EPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE 303 (564)
T ss_pred CCCC-C-CccCCcEEHHHHHHHhhcc------------CCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc
Confidence 7887 5 4667888888887654321 112334559999999999999999999997789999999876
Q ss_pred cccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEee---cccCCCCeeccCCceEEEECCEEEEccccCcCCh
Q psy16199 184 NIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRT---EQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 260 (842)
Q Consensus 184 ~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~---~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~ 260 (842)
.++...+++..+.++||++++++.+.++..+++++.++++... +.+++|++.+.+|++.++++|+||+|+|+. ++.
T Consensus 304 ~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~-p~~ 382 (564)
T PRK12771 304 DMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD-IDS 382 (564)
T ss_pred cCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC-Cch
Confidence 7888888888888899999999999999755445446665443 345778776667788899999999999999 677
Q ss_pred hHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 261 DVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 261 ~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
.+++...|++ +++|++.+|+.+++|+.|+|||+||++.++.++..|+.+|+.||.+|+++|.+.
T Consensus 383 ~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 383 AGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred hhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777544777 788999999778999999999999999888999999999999999999999764
No 35
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=2.3e-29 Score=299.45 Aligned_cols=285 Identities=26% Similarity=0.386 Sum_probs=225.2
Q ss_pred ecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCCCC
Q psy16199 25 SKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANV 103 (842)
Q Consensus 25 g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~ 103 (842)
|++|+|||+. .+||++.+++|.++++.+++.+..++++++|+++++++.++ .+++.+.+ ...||+||||||+..++.
T Consensus 306 G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-~~~~~~~~-~~~yD~vilAtGa~~~r~ 383 (604)
T PRK13984 306 GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG-KDIPLEEL-REKHDAVFLSTGFTLGRS 383 (604)
T ss_pred CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC-CcCCHHHH-HhcCCEEEEEcCcCCCcc
Confidence 9999999996 89999999999999999999999999999999999999887 55555544 346999999999987888
Q ss_pred CCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCC-----cEEEEEE
Q psy16199 104 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGA-----NKVLVVF 178 (842)
Q Consensus 104 ~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~-----~~Vtlv~ 178 (842)
+++| | .+..+++++.+++..++... .+++ .....+++|+|||||++|+|+|..+.+++. .+|+++.
T Consensus 384 l~i~-G-~~~~gv~~a~~~l~~~~~~~------~~~~-~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 384 TRIP-G-TDHPDVIQALPLLREIRDYL------RGEG-PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCCC-C-cCCcCeEeHHHHHHHHHhhh------ccCC-CcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 9998 6 46788999988887665321 1111 112234569999999999999999998753 4588874
Q ss_pred ee-cCccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeec--ccCCCCee--ccCCceEEEECCEEEEcc
Q psy16199 179 RK-GCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTE--QNEKGEWV--EDEEQRIKLKANYIISAF 253 (842)
Q Consensus 179 r~-~~~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~--~~~~G~~~--~~~g~~~~i~~D~Vi~a~ 253 (842)
.. ....++..+.++..+.++||++++++.++++..+++++++|++.+.. .+++|++. ..++++.++++|.||+|+
T Consensus 455 ~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ai 534 (604)
T PRK13984 455 LERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAI 534 (604)
T ss_pred cccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEee
Confidence 32 33456777777777888999999999999987667889888876542 34567643 245667789999999999
Q ss_pred ccCcCChhHHhh-c-CCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 254 GSTLLDNDVLEA-I-KPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 254 G~~~~~~~l~~~-l-~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
|++ |+..++.. + .++++ ++|+|.|| ++++|++|+|||+||++.++. +..|+++|+.||.+|++||++
T Consensus 535 G~~-p~~~~l~~~~~~~l~~-~~G~i~vd-~~~~Ts~~gVfAaGD~~~~~~-~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 535 GQA-PDYSYLPEELKSKLEF-VRGRILTN-EYGQTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCC-CChhhhhhhhccCccc-cCCeEEeC-CCCccCCCCEEEecCcCCchH-HHHHHHHHHHHHHHHHHHhcc
Confidence 999 66665542 2 13554 46889999 689999999999999998764 678999999999999999964
No 36
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.97 E-value=1.8e-29 Score=287.05 Aligned_cols=291 Identities=19% Similarity=0.214 Sum_probs=228.1
Q ss_pred eecceeEeecC-CCCccccccC-CCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCC
Q psy16199 24 LSKDLPDIERP-VAALPDSSEI-PQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNA 101 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~i-P~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~ 101 (842)
+||+|+|||+. .+||++++++ |.++.++++++.+.+.+++.+|+|+.+..++ ++++++++.. .||+||||||+..+
T Consensus 50 ~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg-~dvtl~~L~~-~yDaVIlAtGa~~~ 127 (491)
T PLN02852 50 DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG-RDVSLSELRD-LYHVVVLAYGAESD 127 (491)
T ss_pred CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-ccccHHHHhh-hCCEEEEecCCCCC
Confidence 69999999996 9999999998 7888888888888888888999999999998 8898888764 59999999999866
Q ss_pred CCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHc------------
Q psy16199 102 NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC------------ 169 (842)
Q Consensus 102 ~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~------------ 169 (842)
+.+++| | .+.+||+++.+|+.+++... .+|..|.. ....++|+|||+|++|+|+|..|.+.
T Consensus 128 ~~l~Ip-G-~d~~gV~~a~~fl~~~ng~~--d~~~~~~~---~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~ 200 (491)
T PLN02852 128 RRLGIP-G-EDLPGVLSAREFVWWYNGHP--DCVHLPPD---LKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEH 200 (491)
T ss_pred CCCCCC-C-CCCCCeEEHHHHHHHhhcch--hhhhhhhc---ccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHH
Confidence 889998 6 57889999999987765421 11211211 12344599999999999999999876
Q ss_pred --------CCcEEEEEEeecCccccCCHHHHHH-----------------------------------------H-Hh--
Q psy16199 170 --------GANKVLVVFRKGCTNIRAVPEEVQL-----------------------------------------A-WE-- 197 (842)
Q Consensus 170 --------G~~~Vtlv~r~~~~~~~~~~~~~~~-----------------------------------------~-~~-- 197 (842)
|+++|+|++|++...++....|+++ . .+
T Consensus 201 ~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~ 280 (491)
T PLN02852 201 ALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGK 280 (491)
T ss_pred HHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcc
Confidence 8889999999985544444333322 1 12
Q ss_pred -------cCcEEecCCCceEEEc---cCCcEEEEEEEeecccC---CCCee-ccCCceEEEECCEEEEccccCc-CChhH
Q psy16199 198 -------EKCEFLPFMSPVQVDV---KDNKIAGMQFNRTEQNE---KGEWV-EDEEQRIKLKANYIISAFGSTL-LDNDV 262 (842)
Q Consensus 198 -------~gV~i~~~~~v~~v~~---~~~~v~~V~~~~~~~~~---~G~~~-~~~g~~~~i~~D~Vi~a~G~~~-~~~~l 262 (842)
++|.|++...+++|.. ++++|.++++...+... +|+.. ..+|+.++++||.||.++|+++ |...+
T Consensus 281 ~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l 360 (491)
T PLN02852 281 CAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGL 360 (491)
T ss_pred cccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCC
Confidence 4799999999999973 23689999998776532 45443 3478888999999999999972 23332
Q ss_pred -HhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCch-hHHHHHHHHHHHHHHHHHHHHh
Q psy16199 263 -LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD-TTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 263 -~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~-~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
+....|+..+++|+|.+|+ .++|++|||||+|||..+|. .+..++.+|+.+|.+|..++..
T Consensus 361 ~f~~~~gv~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 361 PFDHKRGVVPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccccCcCeeECCCceEEeCC-CCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 2222267778899999984 67899999999999998875 8889999999999999999864
No 37
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.97 E-value=3.8e-30 Score=289.63 Aligned_cols=297 Identities=31% Similarity=0.422 Sum_probs=238.7
Q ss_pred CceeeecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCC
Q psy16199 20 AKVCLSKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGK 98 (842)
Q Consensus 20 ~~~~~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs 98 (842)
.....||+||+||+. ..||++.|+||.+++++++++..++.+++.|++|+++++++ ++++++.+... ||++++|||+
T Consensus 141 ~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG-~~it~~~L~~e-~Dav~l~~G~ 218 (457)
T COG0493 141 DLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG-RDITLEELLKE-YDAVFLATGA 218 (457)
T ss_pred HHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC-CcCCHHHHHHh-hCEEEEeccc
Confidence 333449999999996 99999999999999999999999999999999999999999 89999888766 8999999999
Q ss_pred CCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCC-CcEEEEcCChhHHHHHHHHHHcCCcEEEEE
Q psy16199 99 PNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILK-GTVIVLGAGDTAFDCATSALRCGANKVLVV 177 (842)
Q Consensus 99 ~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~-~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv 177 (842)
..|+.+++| | .+.++|+.+.+||...+.......- . .+.+... ++|+|||||++++||+....+.|+++|+.+
T Consensus 219 ~~~~~l~i~-g-~d~~gv~~A~dfL~~~~~~~~~~~~---~-~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~ 292 (457)
T COG0493 219 GKPRPLDIP-G-EDAKGVAFALDFLTRLNKEVLGDFA---E-DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCF 292 (457)
T ss_pred cCCCCCCCC-C-cCCCcchHHHHHHHHHHHHHhcccc---c-ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEe
Confidence 999999999 5 5789999999999988765321100 0 0123334 449999999999999999999999999999
Q ss_pred EeecCc-ccc-----CCHHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeeccc----CCCCe--eccCCceEEE
Q psy16199 178 FRKGCT-NIR-----AVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQN----EKGEW--VEDEEQRIKL 244 (842)
Q Consensus 178 ~r~~~~-~~~-----~~~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~~~----~~G~~--~~~~g~~~~i 244 (842)
++.... ... ....+++.+.++|+++.+.....++.. ++|+|.++.+.+.+.. ..|++ ....|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~ 372 (457)
T COG0493 293 YREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTD 372 (457)
T ss_pred ccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEe
Confidence 744322 222 233467778899999999999999985 6789999988765432 22333 3467888999
Q ss_pred ECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHH-HHH
Q psy16199 245 KANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHK-YIQ 323 (842)
Q Consensus 245 ~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~-~L~ 323 (842)
++|+|+.++|+.++.........++..+.+|.+.+|....+|+.|++||+||+..+...++.|+.+||.+|..|+. ++.
T Consensus 373 ~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~~~~l~ 452 (457)
T COG0493 373 AADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAIDKELLL 452 (457)
T ss_pred hHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhhHHHHh
Confidence 9999999999985443322211157788999999995444999999999999999889999999999999999994 444
Q ss_pred h
Q psy16199 324 E 324 (842)
Q Consensus 324 ~ 324 (842)
+
T Consensus 453 ~ 453 (457)
T COG0493 453 G 453 (457)
T ss_pred h
Confidence 3
No 38
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=2.8e-27 Score=263.48 Aligned_cols=291 Identities=24% Similarity=0.359 Sum_probs=213.4
Q ss_pred eecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccc--------------cceeccccccC
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTR--------------DITIEKLRKDG 88 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~--------------~v~~~~~~~~~ 88 (842)
.|++|+++|+. .+||++.++++.+..+.+.+....+++.+.++++++++.+... .+..++. ...
T Consensus 40 ~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 118 (352)
T PRK12770 40 LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEEL-VKK 118 (352)
T ss_pred CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHH-Hhh
Confidence 48999999996 8999988887777767776777777788889999999876310 0111111 246
Q ss_pred CCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCC-cEEEEcCChhHHHHHHHHH
Q psy16199 89 YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAGDTAFDCATSAL 167 (842)
Q Consensus 89 yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~-kVvVIGgG~~g~e~A~~l~ 167 (842)
||+||||||++.++.+++| |. +.++++++.+++..+.... ..+...+ ..+...+ +|+|||+|++|+|+|..|.
T Consensus 119 ~d~lviAtGs~~~~~~~ip-g~-~~~~v~~~~~~~~~~~~~~-~~~~~~~---~~~~~~g~~vvViG~G~~g~e~A~~l~ 192 (352)
T PRK12770 119 YDAVLIATGTWKSRKLGIP-GE-DLPGVYSALEYLFRIRAAK-LGYLPWE---KVPPVEGKKVVVVGAGLTAVDAALEAV 192 (352)
T ss_pred CCEEEEEeCCCCCCcCCCC-Cc-cccCceeHHHHHHHhhhcc-ccccccc---cccccCCCEEEEECCCHHHHHHHHHHH
Confidence 9999999999547778888 64 5678888766654432110 0000000 0112224 5999999999999999999
Q ss_pred HcCCcEEEEEEeecCccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeeccc---CCC--CeeccCCceE
Q psy16199 168 RCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQN---EKG--EWVEDEEQRI 242 (842)
Q Consensus 168 ~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~---~~G--~~~~~~g~~~ 242 (842)
+.|.++|+++++++....+.....++.+.++||++++++.++++. .++++..|++.+...+ +++ ++...+++..
T Consensus 193 ~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (352)
T PRK12770 193 LLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRII-GEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEF 271 (352)
T ss_pred HcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeee-cCCcEeEEEEEEEEecCcCcccCcCceecCCCeE
Confidence 998877999998764333333556677888999999999999997 4466777776554321 111 1122345667
Q ss_pred EEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy16199 243 KLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYI 322 (842)
Q Consensus 243 ~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~~L 322 (842)
++++|.||+++|++ |+..+..+..|++++++|++.|| +.++|+.|+||++|||+.++..+..|+.+|+.||.+|+++|
T Consensus 272 ~i~~D~vi~a~G~~-p~~~l~~~~~g~~~~~~g~i~vd-~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 272 VLEADTVVFAIGEI-PTPPFAKECLGIELNRKGEIVVD-EKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred EEECCEEEECcccC-CCchhhhcccCceecCCCcEeeC-CCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999 57777666227888888999999 57899999999999999878889999999999999999998
Q ss_pred Hh
Q psy16199 323 QE 324 (842)
Q Consensus 323 ~~ 324 (842)
..
T Consensus 350 ~~ 351 (352)
T PRK12770 350 DL 351 (352)
T ss_pred hc
Confidence 53
No 39
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.96 E-value=3.7e-28 Score=273.32 Aligned_cols=221 Identities=20% Similarity=0.255 Sum_probs=172.8
Q ss_pred HHhcCcEEEeceee--ccccceecc--ccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccC
Q psy16199 61 VKDLGVKIECERSL--STRDITIEK--LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCG 136 (842)
Q Consensus 61 l~~~gV~i~~~~~v--~~~~v~~~~--~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~ 136 (842)
+++.||+++.++.. +.+.+.+.+ ...+.++++||||||+ |+.+|+| ++ +...++++.+.+..
T Consensus 104 ~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~-p~~~~~~-~~-~~~~~~~s~~~l~~----------- 169 (454)
T COG1249 104 LKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSR-PRIPPGP-GI-DGARILDSSDALFL----------- 169 (454)
T ss_pred HhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCC-CcCCCCC-CC-CCCeEEechhhccc-----------
Confidence 44568999888732 224455554 2456799999999999 8888887 54 33446666554432
Q ss_pred CCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHHH-----HHhcCcEEecCCCceEE
Q psy16199 137 GCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQL-----AWEEKCEFLPFMSPVQV 211 (842)
Q Consensus 137 ~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~-----~~~~gV~i~~~~~v~~v 211 (842)
..++++++|||||++|+|+|..++++|.+ |||++|.++ .+|..++++.. +.+.|+++++++.++++
T Consensus 170 -------~~lP~~lvIiGgG~IGlE~a~~~~~LG~~-VTiie~~~~-iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 170 -------LELPKSLVIVGGGYIGLEFASVFAALGSK-VTVVERGDR-ILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred -------ccCCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCC-CCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 35788899999999999999999999986 999999985 67777776543 44568999999999999
Q ss_pred EccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH-HhhcCCcccCCCCCeeeCCCCCCCCCCC
Q psy16199 212 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV-LEAIKPVKLDKYGYPEVNYTTMATSVPG 290 (842)
Q Consensus 212 ~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l-~~~l~gl~~~~~G~i~vd~~~~~Ts~~g 290 (842)
...++. ..+.+.++ +..++++|.|++|+|++|+...| ++.. |++++++|+|.|| ++++|++|+
T Consensus 241 ~~~~~~-v~v~~~~g-------------~~~~~~ad~vLvAiGR~Pn~~~LgLe~~-Gv~~~~rg~I~VD-~~~~Tnvp~ 304 (454)
T COG1249 241 EKKDDG-VLVTLEDG-------------EGGTIEADAVLVAIGRKPNTDGLGLENA-GVELDDRGFIKVD-DQMTTNVPG 304 (454)
T ss_pred EecCCe-EEEEEecC-------------CCCEEEeeEEEEccCCccCCCCCChhhc-CceECCCCCEEeC-CccccCCCC
Confidence 754444 33555542 22278899999999999444435 4555 9999999999999 899999999
Q ss_pred eEEeccCCCCchhHHHHHHHHHHHHHHHHH
Q psy16199 291 VFCGGDTANLSDTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 291 Vfa~GD~~~~~~~~~~A~~~G~~aA~~I~~ 320 (842)
|||+||+++++.+.+.|..||+.||.+|..
T Consensus 305 IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 305 IYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred EEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 999999998888999999999999999975
No 40
>KOG0399|consensus
Probab=99.96 E-value=2.1e-28 Score=279.09 Aligned_cols=293 Identities=21% Similarity=0.283 Sum_probs=231.6
Q ss_pred eeeecceeEeecC-CCCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCC
Q psy16199 22 VCLSKDLPDIERP-VAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100 (842)
Q Consensus 22 ~~~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~ 100 (842)
...||.|+||||. ++||++.||||+.++.+.++++.++.+.+.||+|.+|++++ +++.++.+... +|+||+|+||..
T Consensus 1805 nk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eig-k~vs~d~l~~~-~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1805 NKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG-KHVSLDELKKE-NDAIVLATGSTT 1882 (2142)
T ss_pred hhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccc-ccccHHHHhhc-cCeEEEEeCCCC
Confidence 3449999999997 99999999999999999999999999999999999999999 89999887766 999999999999
Q ss_pred CCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHHHHHcCCcEEEEEEe
Q psy16199 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFR 179 (842)
Q Consensus 101 ~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r 179 (842)
||.+|+| | .+..||.-+.+||+.-.+..... .-++ .....++| |+|||||++|-+|-..-.|.|++.|.-++-
T Consensus 1883 prdlpv~-g-rd~kgv~fame~l~~ntk~lld~---~~d~-~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~el 1956 (2142)
T KOG0399|consen 1883 PRDLPVP-G-RDLKGVHFAMEFLEKNTKSLLDS---VLDG-NYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFEL 1956 (2142)
T ss_pred CcCCCCC-C-ccccccHHHHHHHHHhHHhhhcc---cccc-ceeccCCCeEEEECCCCccccccccchhhccceecceee
Confidence 9999999 5 68999999999997654432110 1122 22334455 999999999999999999999987766653
Q ss_pred ecC--------ccccCCHHH------HHHHHh-cCcEEecCCCce-EEE-ccCCcEEEEEEEeecc--cCCCCee--ccC
Q psy16199 180 KGC--------TNIRAVPEE------VQLAWE-EKCEFLPFMSPV-QVD-VKDNKIAGMQFNRTEQ--NEKGEWV--EDE 238 (842)
Q Consensus 180 ~~~--------~~~~~~~~~------~~~~~~-~gV~i~~~~~v~-~v~-~~~~~v~~V~~~~~~~--~~~G~~~--~~~ 238 (842)
-+. ...|..+.. -+++.+ -|-...+.+-.+ ++. .++|.++++++.+.++ ++.|+|. ...
T Consensus 1957 lp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~ 2036 (2142)
T KOG0399|consen 1957 LPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEIN 2036 (2142)
T ss_pred cCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcC
Confidence 321 111111110 122322 244444443333 333 2568899998888876 6779996 467
Q ss_pred CceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHH
Q psy16199 239 EQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318 (842)
Q Consensus 239 g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I 318 (842)
++++.++||+||+|.|+..|.....+++ +++.|.++.|..-.+.+.|++++|||+|||..+...+++|+++||.+|+.+
T Consensus 2037 ~see~~eadlv~lamgf~gpe~~~~~~~-~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2037 NSEEIIEADLVILAMGFVGPEKSVIEQL-NLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred CcceeeecceeeeeccccCcchhhhhhc-CcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 8888999999999999998888888888 799999998887767899999999999999999999999999999999999
Q ss_pred HHHHH
Q psy16199 319 HKYIQ 323 (842)
Q Consensus 319 ~~~L~ 323 (842)
.....
T Consensus 2116 d~~~~ 2120 (2142)
T KOG0399|consen 2116 DELMG 2120 (2142)
T ss_pred HHHhC
Confidence 97543
No 41
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.94 E-value=2.2e-26 Score=264.06 Aligned_cols=254 Identities=18% Similarity=0.176 Sum_probs=181.9
Q ss_pred eeecceeEeecCCCCccc--cccCCCC----------------------C----CC-HHHH-----------HHHHHHHH
Q psy16199 23 CLSKDLPDIERPVAALPD--SSEIPQY----------------------R----LP-FDAV-----------NFEVELVK 62 (842)
Q Consensus 23 ~~g~~V~l~Ek~~~GG~~--~~~iP~~----------------------~----~~-~~~v-----------~~~~~~l~ 62 (842)
..|++|+|+||+.+||.. .-++|.. . .. .++. +.....++
T Consensus 23 ~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (450)
T TIGR01421 23 EHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLE 102 (450)
T ss_pred HCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999899963 3345531 0 01 0111 12334566
Q ss_pred hcCcEEEeceeecc--ccceeccccccCCCEEEEccCCCCCCCC-CCCCCCccccCceehhcchHHHhhcccCCccCCCC
Q psy16199 63 DLGVKIECERSLST--RDITIEKLRKDGYTAIFIGIGKPNANVI-PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCK 139 (842)
Q Consensus 63 ~~gV~i~~~~~v~~--~~v~~~~~~~~~yd~lVlAtGs~~~~~~-~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~ 139 (842)
+.||++++++.... +.+.+++ ..+.||+||||||++ |+.+ ++| |.. ..+++.+++..
T Consensus 103 ~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~vIiAtGs~-p~~p~~i~-g~~---~~~~~~~~~~~-------------- 162 (450)
T TIGR01421 103 KNKVDVIFGHARFTKDGTVEVNG-RDYTAPHILIATGGK-PSFPENIP-GAE---LGTDSDGFFAL-------------- 162 (450)
T ss_pred hCCCEEEEEEEEEccCCEEEECC-EEEEeCEEEEecCCC-CCCCCCCC-CCc---eeEcHHHhhCc--------------
Confidence 77999999886421 3344432 346799999999998 7666 777 532 12333333321
Q ss_pred CCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEcc
Q psy16199 140 KESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 140 ~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~ 214 (842)
...+++|+|||||++|+|+|..|.+.|.+ ||++++.+. .++..++++ +.+.++||++++++.++++...
T Consensus 163 ----~~~~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~~~~-il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 163 ----EELPKRVVIVGAGYIAVELAGVLHGLGSE-THLVIRHER-VLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKT 236 (450)
T ss_pred ----cccCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCC-CCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEe
Confidence 22356799999999999999999999975 999999874 445554433 3456789999999999999743
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCCCCeE
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSVPGVF 292 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVf 292 (842)
++....+++.+ + ..++++|.|++++|++ |++++ ++.+ |++++++|++.|| ++++|++|+||
T Consensus 237 ~~~~~~v~~~~-------------g-~~~i~~D~vi~a~G~~-pn~~~l~l~~~-g~~~~~~G~i~vd-~~~~T~~p~Iy 299 (450)
T TIGR01421 237 VEGKLVIHFED-------------G-KSIDDVDELIWAIGRK-PNTKGLGLENV-GIKLNEKGQIIVD-EYQNTNVPGIY 299 (450)
T ss_pred CCceEEEEECC-------------C-cEEEEcCEEEEeeCCC-cCcccCCcccc-CcEECCCCcEEeC-CCCcCCCCCEE
Confidence 22222244332 2 1469999999999999 56553 3555 8999999999999 57999999999
Q ss_pred EeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 293 CGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 293 a~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|+|||++.+..+..|..||+.||.+|.
T Consensus 300 AiGD~~~~~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 300 ALGDVVGKVELTPVAIAAGRKLSERLF 326 (450)
T ss_pred EEEecCCCcccHHHHHHHHHHHHHHHh
Confidence 999999888889999999999999985
No 42
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.94 E-value=9.4e-26 Score=245.31 Aligned_cols=261 Identities=25% Similarity=0.319 Sum_probs=191.9
Q ss_pred eecceeEeecCCCCccccc-----cCCCC---CCCHHHHHHHHHHHHhcCcEEEeceeecc----c--cceeccccccCC
Q psy16199 24 LSKDLPDIERPVAALPDSS-----EIPQY---RLPFDAVNFEVELVKDLGVKIECERSLST----R--DITIEKLRKDGY 89 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~~~-----~iP~~---~~~~~~v~~~~~~l~~~gV~i~~~~~v~~----~--~v~~~~~~~~~y 89 (842)
.|++|+|+|+..+||.+.. ..|.+ ..+.++..+..++++++|+++++.+.+.. . .+..+++..+.|
T Consensus 22 ~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~ 101 (300)
T TIGR01292 22 ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTA 101 (300)
T ss_pred CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEe
Confidence 5899999999878886532 23443 23467888888889999999988443321 1 122333345679
Q ss_pred CEEEEccCCCCCCCCCCCCCCccc--cCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHH
Q psy16199 90 TAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 167 (842)
Q Consensus 90 d~lVlAtGs~~~~~~~i~~G~~~~--~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~ 167 (842)
|+||+|||+. ++.+++| |.... .++++ |..++. .....++|+|||+|++|+|+|..|.
T Consensus 102 d~liiAtG~~-~~~~~i~-g~~~~~~~~~~~----------------~~~~~~--~~~~~~~v~ViG~G~~~~e~a~~l~ 161 (300)
T TIGR01292 102 KAVIIATGAS-ARKLGIP-GEDEFLGRGVSY----------------CATCDG--PFFKNKEVAVVGGGDSAIEEALYLT 161 (300)
T ss_pred CEEEECCCCC-cccCCCC-ChhhcCCccEEE----------------eeecCh--hhcCCCEEEEECCChHHHHHHHHHH
Confidence 9999999998 7777777 53221 11211 112221 0112345999999999999999999
Q ss_pred HcCCcEEEEEEeecCccccCCHHHHHHHHhc-CcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEEC
Q psy16199 168 RCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA 246 (842)
Q Consensus 168 ~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~~-gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~ 246 (842)
+.+. +|+++++.+ .+...+...+.+.+. ||++++++.++++. .++++..+++.+.. +++..++++
T Consensus 162 ~~~~-~V~~v~~~~--~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~-~~~~~~~v~~~~~~----------~g~~~~i~~ 227 (300)
T TIGR01292 162 RIAK-KVTLVHRRD--KFRAEKILLDRLRKNPNIEFLWNSTVKEIV-GDNKVEGVKIKNTV----------TGEEEELKV 227 (300)
T ss_pred hhcC-EEEEEEeCc--ccCcCHHHHHHHHhCCCeEEEeccEEEEEE-ccCcEEEEEEEecC----------CCceEEEEc
Confidence 8875 599999986 334455556667777 99999999999997 34566666665421 345568999
Q ss_pred CEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCC-CchhHHHHHHHHHHHHHHHHHHH
Q psy16199 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTAN-LSDTTVESVNDGKTAAWHIHKYI 322 (842)
Q Consensus 247 D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~-~~~~~~~A~~~G~~aA~~I~~~L 322 (842)
|.||+++|++ |+.++++.+ ++++++|++.|| ++++|++|+||++|||+. .+..+..|+.||+.||.+|+++|
T Consensus 228 D~vi~a~G~~-~~~~~l~~~--~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 228 DGVFIAIGHE-PNTELLKGL--LELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred cEEEEeeCCC-CChHHHHHh--heecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 9999999999 677777765 667888999999 569999999999999997 56789999999999999998764
No 43
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-25 Score=240.08 Aligned_cols=262 Identities=23% Similarity=0.299 Sum_probs=204.5
Q ss_pred eecc-eeEeecCCCCccccc--------cCCCCCCCHHHHHHHHHHHHhcCcEEEeceeecc---c---cceeccccccC
Q psy16199 24 LSKD-LPDIERPVAALPDSS--------EIPQYRLPFDAVNFEVELVKDLGVKIECERSLST---R---DITIEKLRKDG 88 (842)
Q Consensus 24 ~g~~-V~l~Ek~~~GG~~~~--------~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~---~---~v~~~~~~~~~ 88 (842)
.+.+ ++|+|+..+||++.. ++|......++.+...++.+.+++++...+.... . .++.++.. +.
T Consensus 25 ~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ 103 (305)
T COG0492 25 AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YE 103 (305)
T ss_pred cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EE
Confidence 4656 888888889998642 2333345668888899999999999887443321 1 12233333 56
Q ss_pred CCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHH
Q psy16199 89 YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALR 168 (842)
Q Consensus 89 yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~ 168 (842)
+++||||||+. ++.+.+| |-.+. . .....||..||+ ....++|+|||||++++|.|.+|.+
T Consensus 104 ak~vIiAtG~~-~~~~~~~-~e~e~---------~-----g~gv~yc~~cdg---~~~~k~v~ViGgG~sAve~Al~L~~ 164 (305)
T COG0492 104 AKAVIIATGAG-ARKLGVP-GEEEF---------E-----GKGVSYCATCDG---FFKGKDVVVIGGGDSAVEEALYLSK 164 (305)
T ss_pred EeEEEECcCCc-ccCCCCC-cchhh---------c-----CCceEEeeecCc---cccCCeEEEEcCCHHHHHHHHHHHH
Confidence 89999999998 8887777 31111 1 123458999998 3334459999999999999999999
Q ss_pred cCCcEEEEEEeecCccccCCHHHHHHHHhc-CcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECC
Q psy16199 169 CGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKAN 247 (842)
Q Consensus 169 ~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~~-gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D 247 (842)
.+ ++||+++|++ .+.+.+..++++.+. +|++++++.++++. +++ +.+|.+.+.. ++..++++|
T Consensus 165 ~a-~~Vtlv~r~~--~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~-G~~-v~~v~l~~~~-----------~~~~~~~~~ 228 (305)
T COG0492 165 IA-KKVTLVHRRD--EFRAEEILVERLKKNVKIEVLTNTVVKEIL-GDD-VEGVVLKNVK-----------GEEKELPVD 228 (305)
T ss_pred hc-CeEEEEecCc--ccCcCHHHHHHHHhcCCeEEEeCCceeEEe-cCc-cceEEEEecC-----------CceEEEEec
Confidence 96 4599999997 677777777888766 89999999999998 444 8888888641 456789999
Q ss_pred EEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 248 YIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 248 ~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~-~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
.|++++|.. |+.+|.+.+ ++ ++++|+|.+|+ .++||+|||||+||++..+ +++..|..+|..||.++.++|...
T Consensus 229 gvf~~iG~~-p~~~~~~~~-~~-~~~~g~I~v~~-~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 229 GVFIAIGHL-PNTELLKGL-GV-LDENGYIVVDE-EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred eEEEecCCC-CchHHHhhc-cc-cCCCCcEEcCC-CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 999999999 677888886 45 88999999995 5999999999999998765 479999999999999999999753
No 44
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.94 E-value=4.3e-26 Score=261.78 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=185.5
Q ss_pred CcccccccCceeeecceeEeecCCCCccc--cccCCCCC-------------------------CC------------HH
Q psy16199 12 PPDIEMSTAKVCLSKDLPDIERPVAALPD--SSEIPQYR-------------------------LP------------FD 52 (842)
Q Consensus 12 ~~~~~~~~~~~~~g~~V~l~Ek~~~GG~~--~~~iP~~~-------------------------~~------------~~ 52 (842)
|++-+...+...+|++|+|+|++.+||.. ..++|... .. .+
T Consensus 12 paG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 91 (446)
T TIGR01424 12 SGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLLQKKDDEIAR 91 (446)
T ss_pred HHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHHHHHHHHHHH
Confidence 33333333444579999999999999974 33455420 00 01
Q ss_pred HHHHHHHHHHhcCcEEEecee--ecccccee-ccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhc
Q psy16199 53 AVNFEVELVKDLGVKIECERS--LSTRDITI-EKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATS 129 (842)
Q Consensus 53 ~v~~~~~~l~~~gV~i~~~~~--v~~~~v~~-~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~ 129 (842)
+.+...+++++.||+++.++. ++.+.+.+ .++..+.||+||||||++ |+.+++| |.. ..+++.+.+.
T Consensus 92 ~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~-p~~p~i~-G~~---~~~~~~~~~~----- 161 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGR-PQKPNLP-GHE---LGITSNEAFH----- 161 (446)
T ss_pred HHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCc-CCCCCCC-Ccc---ceechHHhhc-----
Confidence 223344556778999998864 33223333 223456799999999999 7777887 532 1233322221
Q ss_pred ccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEec
Q psy16199 130 SKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLP 204 (842)
Q Consensus 130 ~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~ 204 (842)
....+++++|||+|++|+|+|..+.+.|.+ |+++++.+. .++..++++ +.+.+.||++++
T Consensus 162 -------------l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~-Vtli~~~~~-~l~~~d~~~~~~l~~~l~~~gV~i~~ 226 (446)
T TIGR01424 162 -------------LPTLPKSILILGGGYIAVEFAGIWRGLGVQ-VTLIYRGEL-ILRGFDDDMRALLARNMEGRGIRIHP 226 (446)
T ss_pred -------------ccccCCeEEEECCcHHHHHHHHHHHHcCCe-EEEEEeCCC-CCcccCHHHHHHHHHHHHHCCCEEEe
Confidence 023356699999999999999999999875 999999874 344444332 235578999999
Q ss_pred CCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCC
Q psy16199 205 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYT 282 (842)
Q Consensus 205 ~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~ 282 (842)
++.++++...++.+ .+++.+ + .++++|.||+|+|.+ |+.+. ++.. |++++++|++.|| +
T Consensus 227 ~~~v~~i~~~~~~~-~v~~~~-------------g--~~i~~D~viva~G~~-pn~~~l~l~~~-g~~~~~~G~i~vd-~ 287 (446)
T TIGR01424 227 QTSLTSITKTDDGL-KVTLSH-------------G--EEIVADVVLFATGRS-PNTKGLGLEAA-GVELNDAGAIAVD-E 287 (446)
T ss_pred CCEEEEEEEcCCeE-EEEEcC-------------C--cEeecCEEEEeeCCC-cCCCcCCcccc-CeEECCCCcEEeC-C
Confidence 99999986433332 233321 2 268999999999999 55553 3455 7889989999999 6
Q ss_pred CCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 283 TMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 283 ~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+++|++|+|||+|||+..+..++.|..||+.||.+|.
T Consensus 288 ~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEF 324 (446)
T ss_pred CCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHh
Confidence 8999999999999999878889999999999999985
No 45
>PRK06370 mercuric reductase; Validated
Probab=99.94 E-value=9.5e-26 Score=260.44 Aligned_cols=222 Identities=23% Similarity=0.339 Sum_probs=166.6
Q ss_pred HHHHHhc-CcEEEeceeec--cccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCc
Q psy16199 58 VELVKDL-GVKIECERSLS--TRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGL 134 (842)
Q Consensus 58 ~~~l~~~-gV~i~~~~~v~--~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~ 134 (842)
..++++. ||++++++.+. .+.+++++ ..+.||+||||||++ |+.+++| |+ +..+++++.+++..
T Consensus 101 ~~~~~~~~gv~v~~g~~~~~~~~~v~v~~-~~~~~d~lViATGs~-p~~p~i~-G~-~~~~~~~~~~~~~~--------- 167 (463)
T PRK06370 101 EQWLRGLEGVDVFRGHARFESPNTVRVGG-ETLRAKRIFINTGAR-AAIPPIP-GL-DEVGYLTNETIFSL--------- 167 (463)
T ss_pred HHHHhcCCCcEEEEEEEEEccCCEEEECc-EEEEeCEEEEcCCCC-CCCCCCC-CC-CcCceEcchHhhCc---------
Confidence 3445666 99999988542 14455543 356799999999998 8888888 64 44566665444321
Q ss_pred cCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCce
Q psy16199 135 CGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPV 209 (842)
Q Consensus 135 c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~ 209 (842)
...+++|+|||||++|+|+|..|.+.|.+ |+++++.+. .++..+.+ .+.+.+.||++++++.++
T Consensus 168 ---------~~~~~~vvVIGgG~~g~E~A~~l~~~G~~-Vtli~~~~~-~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~ 236 (463)
T PRK06370 168 ---------DELPEHLVIIGGGYIGLEFAQMFRRFGSE-VTVIERGPR-LLPREDEDVAAAVREILEREGIDVRLNAECI 236 (463)
T ss_pred ---------cccCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEEcCCC-CCcccCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 22356799999999999999999999875 999999874 34443332 234567899999999999
Q ss_pred EEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChh-H-HhhcCCcccCCCCCeeeCCCCCCCC
Q psy16199 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND-V-LEAIKPVKLDKYGYPEVNYTTMATS 287 (842)
Q Consensus 210 ~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~-l-~~~l~gl~~~~~G~i~vd~~~~~Ts 287 (842)
++...++.+ .+.+.. ++...++++|.||+|+|++ |+.+ + ++.. |++++++|++.|| ++++|+
T Consensus 237 ~i~~~~~~~-~v~~~~------------~~~~~~i~~D~Vi~A~G~~-pn~~~l~l~~~-g~~~~~~G~i~vd-~~l~t~ 300 (463)
T PRK06370 237 RVERDGDGI-AVGLDC------------NGGAPEITGSHILVAVGRV-PNTDDLGLEAA-GVETDARGYIKVD-DQLRTT 300 (463)
T ss_pred EEEEcCCEE-EEEEEe------------CCCceEEEeCEEEECcCCC-cCCCCcCchhh-CceECCCCcEeEC-cCCcCC
Confidence 997433332 233322 1123479999999999999 5555 4 4555 8899999999999 679999
Q ss_pred CCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 288 VPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 288 ~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+|+|||+|||+..+...+.|..||+.||.||.
T Consensus 301 ~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~ 332 (463)
T PRK06370 301 NPGIYAAGDCNGRGAFTHTAYNDARIVAANLL 332 (463)
T ss_pred CCCEEEeeecCCCcccHHHHHHHHHHHHHHHh
Confidence 99999999999888889999999999999985
No 46
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.94 E-value=4.2e-26 Score=233.39 Aligned_cols=189 Identities=16% Similarity=0.246 Sum_probs=153.4
Q ss_pred CCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc
Q psy16199 520 DDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLS 599 (842)
Q Consensus 520 ~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s 599 (842)
-+++++|||.++=+|.+..+..... +...++ ...|+|+|+. +.++++|.++++++++ ++|+||||++
T Consensus 35 ~~~~~~rgr~ef~~~~e~~~~~i~~----------e~~~~~-~~~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~g 101 (231)
T TIGR00736 35 SRDIEKRGRKEFSFNLEEFNSYIIE----------QIKKAE-SRALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAH 101 (231)
T ss_pred HHHHHHcCCcccCcCcccHHHHHHH----------HHHHHh-hcCCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECC
Confidence 3567889999988886443222220 001111 1269999995 6799999999999987 8999999999
Q ss_pred CCCC-CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh--cHHHHHHHHHHCCCCEEEEecCCCccccCCCC
Q psy16199 600 CPHG-MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT--NITDIAKAAYEGKADGVSAINTVSGLMSLSAD 676 (842)
Q Consensus 600 cP~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~--~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~ 676 (842)
||+. +.+.++|+++++||+.+.++++++++ .++||+||++++.+ +..+++++++++|+|+|++..
T Consensus 102 CP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~----------- 169 (231)
T TIGR00736 102 CRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA----------- 169 (231)
T ss_pred CCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee-----------
Confidence 9954 67788999999999999999999994 58999999999776 677999999999999998831
Q ss_pred CCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 677 GNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 677 ~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
+++|. .+..|++|+++++.++++||||+|||.|++|+.+++++|||+||++|+++..
T Consensus 170 ----------------~~~g~--~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 170 ----------------MYPGK--PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred ----------------CCCCC--chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 11221 1256999999999984599999999999999999999999999999999954
No 47
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.94 E-value=6.7e-26 Score=245.03 Aligned_cols=176 Identities=19% Similarity=0.263 Sum_probs=152.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++||. |.+++++.++++.++++|+|+||||++||.. ...+++|++++.+|+.+.++++++++.+++||+||++..
T Consensus 55 ~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 55 SPVALQLG-GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred CcEEEEEc-cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 79999995 7899999999999999899999999999943 466789999999999999999999999999999999875
Q ss_pred hh------cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCc---cccchHHHHHHHHhh
Q psy16199 643 IT------NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNA---TRPMGLKAVSSIAKM 713 (842)
Q Consensus 643 ~~------~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~---~~p~al~~v~~i~~~ 713 (842)
++ +..++++.++++|++.|+++.++.. ..||||++ +.|..+++++++++.
T Consensus 134 ~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~---------------------~qg~sg~~~~~~~~~~~~~i~~vk~~ 192 (318)
T TIGR00742 134 IDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW---------------------LSGLSPKENREIPPLRYERVYQLKKD 192 (318)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh---------------------hcCCCccccccCCchhHHHHHHHHHh
Confidence 43 4568899999999999999654321 34676654 566679999999998
Q ss_pred CCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 714 FPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 714 ~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
++++|||+||||.|++|+.+++. |||+|||||+++. +||+|.++.+.|
T Consensus 193 ~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~-nP~if~~~~~~l 240 (318)
T TIGR00742 193 FPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE-NPYLLANVDREI 240 (318)
T ss_pred CCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh-CCHHHHHHHHHh
Confidence 86799999999999999999996 9999999999995 599999886544
No 48
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.93 E-value=1.7e-25 Score=258.51 Aligned_cols=257 Identities=22% Similarity=0.271 Sum_probs=185.6
Q ss_pred eecceeEeecCCCCccc-c-ccCCCCC--------------------------CC------HHHHHH-----HHHHHHhc
Q psy16199 24 LSKDLPDIERPVAALPD-S-SEIPQYR--------------------------LP------FDAVNF-----EVELVKDL 64 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~-~-~~iP~~~--------------------------~~------~~~v~~-----~~~~l~~~ 64 (842)
.|++|+|+||..+||.. + -++|... +. ++++.. ..+.+++.
T Consensus 22 ~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (463)
T TIGR02053 22 LGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSY 101 (463)
T ss_pred CCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhC
Confidence 69999999998888863 2 3455211 00 022211 22456778
Q ss_pred CcEEEeceeec--cccceeccc-cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCC
Q psy16199 65 GVKIECERSLS--TRDITIEKL-RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKE 141 (842)
Q Consensus 65 gV~i~~~~~v~--~~~v~~~~~-~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~ 141 (842)
||+++.++... .+.+.++++ ..+.||+||||||+. |+.+++| |. +..+++++.+++..
T Consensus 102 gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~-p~~p~i~-G~-~~~~~~~~~~~~~~---------------- 162 (463)
T TIGR02053 102 GVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGAR-PAIPPIP-GL-KEAGYLTSEEALAL---------------- 162 (463)
T ss_pred CcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCC-CCCCCCC-Cc-ccCceECchhhhCc----------------
Confidence 99999887542 144555443 245799999999998 8888888 64 33456665544321
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCC
Q psy16199 142 SLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDN 216 (842)
Q Consensus 142 ~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~ 216 (842)
...+++|+|||+|.+|+|+|..|.+.|.+ ||++++.+. .++..++++ +.+.+.||++++++.++++..+++
T Consensus 163 --~~~~~~vvIIGgG~~g~E~A~~l~~~g~~-Vtli~~~~~-~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~ 238 (463)
T TIGR02053 163 --DRIPESLAVIGGGAIGVELAQAFARLGSE-VTILQRSDR-LLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGG 238 (463)
T ss_pred --ccCCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEEcCCc-CCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC
Confidence 12345699999999999999999999975 999999874 444444332 335577999999999999974333
Q ss_pred cEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChh-H-HhhcCCcccCCCCCeeeCCCCCCCCCCCeEEe
Q psy16199 217 KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND-V-LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCG 294 (842)
Q Consensus 217 ~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~-l-~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~ 294 (842)
...+++.. ++...++++|.||+|+|.+ |+.. + ++.. |++++++|+|.|| ++++|+.|+|||+
T Consensus 239 -~~~v~~~~------------~~~~~~i~~D~ViiA~G~~-p~~~~l~l~~~-g~~~~~~G~i~vd-~~~~Ts~~~VyAi 302 (463)
T TIGR02053 239 -GKIITVEK------------PGGQGEVEADELLVATGRR-PNTDGLGLEKA-GVKLDERGGILVD-ETLRTSNPGIYAA 302 (463)
T ss_pred -EEEEEEEe------------CCCceEEEeCEEEEeECCC-cCCCCCCcccc-CCEECCCCcEeEC-CCccCCCCCEEEe
Confidence 33344432 1223579999999999999 5555 4 4554 7888999999999 6899999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 295 GDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 295 GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|||+..+..+..|..||+.||.+|.
T Consensus 303 GD~~~~~~~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 303 GDVTGGLQLEYVAAKEGVVAAENAL 327 (463)
T ss_pred eecCCCcccHhHHHHHHHHHHHHhc
Confidence 9999888889999999999999995
No 49
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=3.6e-25 Score=255.46 Aligned_cols=221 Identities=18% Similarity=0.221 Sum_probs=161.2
Q ss_pred HHHhcCcEEEeceee--ccccceec--cc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCC
Q psy16199 60 LVKDLGVKIECERSL--STRDITIE--KL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKG 133 (842)
Q Consensus 60 ~l~~~gV~i~~~~~v--~~~~v~~~--~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~ 133 (842)
.+++.||+++.++.. +.+.+.+. ++ ..+.||+||||||++ |+.+|.+++ +.++++++.+.+..
T Consensus 102 ~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~-p~~~p~~~~--~~~~v~~~~~~~~~-------- 170 (471)
T PRK06467 102 MAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSR-PIQLPFIPH--DDPRIWDSTDALEL-------- 170 (471)
T ss_pred HHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCC-CCCCCCCCC--CCCcEEChHHhhcc--------
Confidence 345679999988743 21333342 22 346799999999998 664443323 33456665544431
Q ss_pred ccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHH-----HHHhcCcEEecCCCc
Q psy16199 134 LCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSP 208 (842)
Q Consensus 134 ~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~-----~~~~~gV~i~~~~~v 208 (842)
...+++++|||||++|+|+|..+.+.|.+ ||++++.+. .++..++++. .+.+. +++++++.+
T Consensus 171 ----------~~~~~~vvIiGgG~iG~E~A~~l~~~G~~-Vtlv~~~~~-il~~~d~~~~~~~~~~l~~~-v~i~~~~~v 237 (471)
T PRK06467 171 ----------KEVPKRLLVMGGGIIGLEMGTVYHRLGSE-VDVVEMFDQ-VIPAADKDIVKVFTKRIKKQ-FNIMLETKV 237 (471)
T ss_pred ----------ccCCCeEEEECCCHHHHHHHHHHHHcCCC-EEEEecCCC-CCCcCCHHHHHHHHHHHhhc-eEEEcCCEE
Confidence 22346799999999999999999999975 999999874 4555554432 34455 999999999
Q ss_pred eEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCC
Q psy16199 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMAT 286 (842)
Q Consensus 209 ~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~T 286 (842)
+++...++.+ .+++.+. +++..++++|.||+++|++ |+.++ .+.. |++++++|+|.|| ++++|
T Consensus 238 ~~i~~~~~~~-~v~~~~~-----------~~~~~~i~~D~vi~a~G~~-pn~~~l~~~~~-gl~~~~~G~I~Vd-~~~~t 302 (471)
T PRK06467 238 TAVEAKEDGI-YVTMEGK-----------KAPAEPQRYDAVLVAVGRV-PNGKLLDAEKA-GVEVDERGFIRVD-KQCRT 302 (471)
T ss_pred EEEEEcCCEE-EEEEEeC-----------CCcceEEEeCEEEEeeccc-ccCCccChhhc-CceECCCCcEeeC-CCccc
Confidence 9887433333 3444331 1233579999999999999 55553 3444 7999999999999 68999
Q ss_pred CCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 287 SVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 287 s~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+.|+|||+|||+..+..+..|..||+.||.+|.
T Consensus 303 ~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 303 NVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred CCCCEEEehhhcCCcccHHHHHHHHHHHHHHHc
Confidence 999999999999878889999999999999985
No 50
>PRK06116 glutathione reductase; Validated
Probab=99.93 E-value=2.2e-25 Score=256.60 Aligned_cols=217 Identities=21% Similarity=0.250 Sum_probs=161.4
Q ss_pred HHHHhcCcEEEeceee--ccccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccC
Q psy16199 59 ELVKDLGVKIECERSL--STRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCG 136 (842)
Q Consensus 59 ~~l~~~gV~i~~~~~v--~~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~ 136 (842)
+.+++.||+++.++.. +.+.+++ ++..+.||+||||||++ |+.+++| |.. .++++.+++..
T Consensus 101 ~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~-p~~p~i~-g~~---~~~~~~~~~~~----------- 163 (450)
T PRK06116 101 NGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGR-PSIPDIP-GAE---YGITSDGFFAL----------- 163 (450)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCC-CCCCCCC-Ccc---eeEchhHhhCc-----------
Confidence 3456679999988743 2234555 33456799999999998 7777887 532 24444333321
Q ss_pred CCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEE
Q psy16199 137 GCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQV 211 (842)
Q Consensus 137 ~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v 211 (842)
...+++|+|||+|++|+|+|..|.+.|.+ ||++++++. .++..+.+ .+.+.+.||++++++.++++
T Consensus 164 -------~~~~~~vvViGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~-~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i 234 (450)
T PRK06116 164 -------EELPKRVAVVGAGYIAVEFAGVLNGLGSE-THLFVRGDA-PLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAV 234 (450)
T ss_pred -------cccCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCC-CccccCHHHHHHHHHHHHHCCcEEECCCEEEEE
Confidence 23356799999999999999999999875 999999864 34444433 23466789999999999999
Q ss_pred EccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCCC
Q psy16199 212 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSVP 289 (842)
Q Consensus 212 ~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~~ 289 (842)
...++....+++.+ | .++++|.||+++|++ |+... ++.+ |++++++|+|.|| ++++|++|
T Consensus 235 ~~~~~g~~~v~~~~-------------g--~~i~~D~Vv~a~G~~-p~~~~l~l~~~-g~~~~~~G~i~vd-~~~~Ts~~ 296 (450)
T PRK06116 235 EKNADGSLTLTLED-------------G--ETLTVDCLIWAIGRE-PNTDGLGLENA-GVKLNEKGYIIVD-EYQNTNVP 296 (450)
T ss_pred EEcCCceEEEEEcC-------------C--cEEEeCEEEEeeCCC-cCCCCCCchhc-CceECCCCcEecC-CCCCcCCC
Confidence 74333212243322 2 268999999999999 55553 3455 7899999999999 68999999
Q ss_pred CeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 290 GVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 290 gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+|||+|||+..+..+..|+.||+.||.+|.
T Consensus 297 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 297 GIYAVGDVTGRVELTPVAIAAGRRLSERLF 326 (450)
T ss_pred CEEEEeecCCCcCcHHHHHHHHHHHHHHHh
Confidence 999999999877889999999999999985
No 51
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.93 E-value=3.1e-25 Score=258.64 Aligned_cols=263 Identities=15% Similarity=0.194 Sum_probs=194.2
Q ss_pred eecceeEeecCCCCccccc--cCCCC-----CCCHHHHHHHHHHHHhcCcEEEeceeecc-------ccceeccccccCC
Q psy16199 24 LSKDLPDIERPVAALPDSS--EIPQY-----RLPFDAVNFEVELVKDLGVKIECERSLST-------RDITIEKLRKDGY 89 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~~~--~iP~~-----~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-------~~v~~~~~~~~~y 89 (842)
.|++|+|++. .+||++.. .++.+ ....++.+...++++++|+++++++.|.. ..++++++..+.|
T Consensus 234 ~G~~v~li~~-~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~ 312 (515)
T TIGR03140 234 KGLRTAMVAE-RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKA 312 (515)
T ss_pred CCCcEEEEec-CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEe
Confidence 6999999975 68998642 22221 23457788888889999999999876542 1233344445679
Q ss_pred CEEEEccCCCCCCCCCCCCCCccc--cCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHH
Q psy16199 90 TAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 167 (842)
Q Consensus 90 d~lVlAtGs~~~~~~~i~~G~~~~--~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~ 167 (842)
|+||+|||+. ++.+++| |.... .+++ +|..|+. ....+++|+|||||++|+|+|..|+
T Consensus 313 d~lIlAtGa~-~~~~~ip-G~~~~~~~~v~----------------~~~~~~~--~~~~~k~VvViGgG~~g~E~A~~L~ 372 (515)
T TIGR03140 313 KSVIVATGAR-WRKLGVP-GEKEYIGKGVA----------------YCPHCDG--PFFKGKDVAVIGGGNSGIEAAIDLA 372 (515)
T ss_pred CEEEECCCCC-cCCCCCC-CHHHcCCCeEE----------------EeeccCh--hhcCCCEEEEECCcHHHHHHHHHHH
Confidence 9999999998 7778887 43221 1111 2334443 1122345999999999999999999
Q ss_pred HcCCcEEEEEEeecCccccCCHHHHHHHHh-cCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEEC
Q psy16199 168 RCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA 246 (842)
Q Consensus 168 ~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~-~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~ 246 (842)
+.|. +||++++.+. +.........+.+ .||++++++.++++..+++++.+|++.+.. +++..+++|
T Consensus 373 ~~g~-~Vtli~~~~~--l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~----------~~~~~~i~~ 439 (515)
T TIGR03140 373 GIVR-HVTVLEFADE--LKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRN----------SGEEKQLDL 439 (515)
T ss_pred hcCc-EEEEEEeCCc--CChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECC----------CCcEEEEEc
Confidence 8875 5999998763 2222223344544 599999999999998555778778876532 244568999
Q ss_pred CEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc-hhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 247 D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~-~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
|.|++++|.+ |++.+++.. ++++++|+|.|| ++++|++|+|||+|||+..+ .++..|+.+|+.||.+|++||..
T Consensus 440 D~vi~a~G~~-Pn~~~l~~~--~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 440 DGVFVQIGLV-PNTEWLKDA--VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CEEEEEeCCc-CCchHHhhh--cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 9999999999 788887764 778888999999 68999999999999998754 56789999999999999999863
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.93 E-value=7.3e-25 Score=255.85 Aligned_cols=265 Identities=18% Similarity=0.220 Sum_probs=198.3
Q ss_pred eecceeEeecCCCCcccc--ccCCCC-----CCCHHHHHHHHHHHHhcCcEEEeceeecc-------ccceeccccccCC
Q psy16199 24 LSKDLPDIERPVAALPDS--SEIPQY-----RLPFDAVNFEVELVKDLGVKIECERSLST-------RDITIEKLRKDGY 89 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~~--~~iP~~-----~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-------~~v~~~~~~~~~y 89 (842)
.|++|+|+++ .+||++. +.++.+ ..+.++.++..++++++|+++++++.+.. ..+.+.++..+.|
T Consensus 233 ~G~~v~li~~-~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a 311 (517)
T PRK15317 233 KGIRTGIVAE-RFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKA 311 (517)
T ss_pred CCCcEEEEec-CCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEc
Confidence 5999999986 4899863 333322 24457888888999999999998876532 1233334445679
Q ss_pred CEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHHHHH
Q psy16199 90 TAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSALR 168 (842)
Q Consensus 90 d~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~ 168 (842)
|+||+|||+. ++.+++| |..++.+ ....+|..|++ ...+++ |+|||||++|+|+|..|..
T Consensus 312 ~~vViAtG~~-~r~~~ip-G~~~~~~--------------~~v~~~~~~~~---~~~~gk~VvVVGgG~~g~e~A~~L~~ 372 (517)
T PRK15317 312 KTVILATGAR-WRNMNVP-GEDEYRN--------------KGVAYCPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAG 372 (517)
T ss_pred CEEEECCCCC-cCCCCCC-CHHHhcC--------------ceEEEeeccCc---hhcCCCEEEEECCCHHHHHHHHHHHh
Confidence 9999999998 7777887 5322211 01123444544 333454 9999999999999999999
Q ss_pred cCCcEEEEEEeecCccccCCHHHHHHHHh-cCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECC
Q psy16199 169 CGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKAN 247 (842)
Q Consensus 169 ~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~-~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D 247 (842)
.+. +||++++++. +.......+.+.+ .||++++++.++++...++++..+++.+.. ++++.+++||
T Consensus 373 ~~~-~Vtlv~~~~~--l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~----------~g~~~~i~~D 439 (517)
T PRK15317 373 IVK-HVTVLEFAPE--LKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRT----------TGEEHHLELE 439 (517)
T ss_pred cCC-EEEEEEECcc--ccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECC----------CCcEEEEEcC
Confidence 874 6999998863 3333333344444 599999999999998555778878877532 3455689999
Q ss_pred EEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 248 YIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 248 ~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~-~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
.|++++|.+ |++++++.. ++++++|+|.+| ++++|++|+|||+||++..+ +++..|+.+|..||.++..+|...
T Consensus 440 ~v~~~~G~~-p~~~~l~~~--v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 440 GVFVQIGLV-PNTEWLKGT--VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred EEEEeECCc-cCchHHhhh--eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhc
Confidence 999999999 788888764 778888999999 68899999999999998754 678999999999999999999764
No 53
>PRK07846 mycothione reductase; Reviewed
Probab=99.93 E-value=1.7e-24 Score=248.39 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=163.8
Q ss_pred HHhcCcEEEeceee--ccccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCC
Q psy16199 61 VKDLGVKIECERSL--STRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGC 138 (842)
Q Consensus 61 l~~~gV~i~~~~~v--~~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c 138 (842)
++..||+++.++.. +.+.|++.++..+.||+||||||++ |+.+++| |. +...++++.+++..
T Consensus 99 ~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~-p~~p~i~-g~-~~~~~~~~~~~~~l------------- 162 (451)
T PRK07846 99 RDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSR-PVIPPVI-AD-SGVRYHTSDTIMRL------------- 162 (451)
T ss_pred hhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCC-CCCCCCC-Cc-CCccEEchHHHhhh-------------
Confidence 44568888887643 2245666555566799999999998 7888887 53 33345555444321
Q ss_pred CCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHH----HHHhcCcEEecCCCceEEEcc
Q psy16199 139 KKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 139 ~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~----~~~~~gV~i~~~~~v~~v~~~ 214 (842)
...+++++|||||++|+|+|..|.+.|.+ ||++++.+. .++..+.++. .+.+.+|++++++.++++...
T Consensus 163 -----~~~~~~vvIIGgG~iG~E~A~~l~~~G~~-Vtli~~~~~-ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 163 -----PELPESLVIVGGGFIAAEFAHVFSALGVR-VTVVNRSGR-LLRHLDDDISERFTELASKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred -----hhcCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEEcCCc-cccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEc
Confidence 22346799999999999999999999975 999999874 4455544433 334678999999999998743
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHH--hhcCCcccCCCCCeeeCCCCCCCCCCCeE
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL--EAIKPVKLDKYGYPEVNYTTMATSVPGVF 292 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~--~~l~gl~~~~~G~i~vd~~~~~Ts~~gVf 292 (842)
++.+ .+.+.+ | .++++|.|++|+|++ |+.+++ +.+ |++++++|+|.|| ++++|++|+||
T Consensus 236 ~~~v-~v~~~~-------------g--~~i~~D~vl~a~G~~-pn~~~l~~~~~-gl~~~~~G~i~Vd-~~~~Ts~p~Iy 296 (451)
T PRK07846 236 GSGV-TLRLDD-------------G--STVEADVLLVATGRV-PNGDLLDAAAA-GVDVDEDGRVVVD-EYQRTSAEGVF 296 (451)
T ss_pred CCEE-EEEECC-------------C--cEeecCEEEEEECCc-cCccccCchhc-CceECCCCcEeEC-CCcccCCCCEE
Confidence 3333 233321 2 269999999999999 676664 445 7999999999999 68999999999
Q ss_pred EeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 293 CGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 293 a~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|+|||+..+.+.+.|..||+.+|.||.
T Consensus 297 A~GD~~~~~~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 297 ALGDVSSPYQLKHVANHEARVVQHNLL 323 (451)
T ss_pred EEeecCCCccChhHHHHHHHHHHHHHc
Confidence 999999877888999999999999985
No 54
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.93 E-value=9.1e-25 Score=251.98 Aligned_cols=220 Identities=17% Similarity=0.235 Sum_probs=162.4
Q ss_pred HHHHHhcCcEEEeceeec------ccccee--cccc--ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHh
Q psy16199 58 VELVKDLGVKIECERSLS------TRDITI--EKLR--KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVA 127 (842)
Q Consensus 58 ~~~l~~~gV~i~~~~~v~------~~~v~~--~~~~--~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~ 127 (842)
.+++++.||+++.++... .+.+++ +++. .+.||+||||||+. |+.+|.+ + .+...+++..+++..
T Consensus 99 ~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~-p~~~p~~-~-~~~~~v~~~~~~~~~-- 173 (466)
T PRK07845 99 RARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS-PRILPTA-E-PDGERILTWRQLYDL-- 173 (466)
T ss_pred HHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC-CCCCCCC-C-CCCceEEeehhhhcc--
Confidence 355667899999886432 123333 2332 46799999999998 7655554 2 233456665443321
Q ss_pred hcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEE
Q psy16199 128 TSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEF 202 (842)
Q Consensus 128 ~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i 202 (842)
...+++++|||+|++|+|+|..|.+.|.+ ||++++.+. .++..+.+ .+.+.+.||++
T Consensus 174 ----------------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~-Vtli~~~~~-~l~~~d~~~~~~l~~~L~~~gV~i 235 (466)
T PRK07845 174 ----------------DELPEHLIVVGSGVTGAEFASAYTELGVK-VTLVSSRDR-VLPGEDADAAEVLEEVFARRGMTV 235 (466)
T ss_pred ----------------cccCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEEcCCc-CCCCCCHHHHHHHHHHHHHCCcEE
Confidence 23356799999999999999999999865 999998874 45544443 23456789999
Q ss_pred ecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeC
Q psy16199 203 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVN 280 (842)
Q Consensus 203 ~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd 280 (842)
++++.++++...++.+. +.+.+ | .++++|.|++++|++ |+..+ ++.+ |++++++|+|.||
T Consensus 236 ~~~~~v~~v~~~~~~~~-v~~~~-------------g--~~l~~D~vl~a~G~~-pn~~~l~l~~~-gl~~~~~G~i~Vd 297 (466)
T PRK07845 236 LKRSRAESVERTGDGVV-VTLTD-------------G--RTVEGSHALMAVGSV-PNTAGLGLEEA-GVELTPSGHITVD 297 (466)
T ss_pred EcCCEEEEEEEeCCEEE-EEECC-------------C--cEEEecEEEEeecCC-cCCCCCCchhh-CceECCCCcEeEC
Confidence 99999999864334332 33321 2 268999999999999 56553 4555 8999999999999
Q ss_pred CCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 281 ~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
++++|++|+|||+|||+..+.+++.|..||+.||.+|.
T Consensus 298 -~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 298 -RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred -CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHc
Confidence 68999999999999999888899999999999999885
No 55
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=4.4e-25 Score=253.44 Aligned_cols=254 Identities=17% Similarity=0.209 Sum_probs=180.5
Q ss_pred eecceeEeecC--CCCccc--cccCCCCCC--------C-H-------HHHHHH----HHHHHh-cCcEEEeceee--cc
Q psy16199 24 LSKDLPDIERP--VAALPD--SSEIPQYRL--------P-F-------DAVNFE----VELVKD-LGVKIECERSL--ST 76 (842)
Q Consensus 24 ~g~~V~l~Ek~--~~GG~~--~~~iP~~~~--------~-~-------~~v~~~----~~~l~~-~gV~i~~~~~v--~~ 76 (842)
.|++|+|+|+. .+||.. ..++|...+ . . +++++. .+.+.+ .|++++.++.. +.
T Consensus 25 ~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~ 104 (441)
T PRK08010 25 AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINN 104 (441)
T ss_pred CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecC
Confidence 68999999996 579974 345664321 0 0 111111 112333 48999887642 21
Q ss_pred cccee--cccc-ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEE
Q psy16199 77 RDITI--EKLR-KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVL 153 (842)
Q Consensus 77 ~~v~~--~~~~-~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVI 153 (842)
+.+.+ .+.. .+.||+||||||++ |+.+++| |+.+.++++++.+++.. ...+++|+||
T Consensus 105 ~~~~v~~~~g~~~~~~d~lviATGs~-p~~p~i~-G~~~~~~v~~~~~~~~~------------------~~~~~~v~Vi 164 (441)
T PRK08010 105 HSLRVHRPEGNLEIHGEKIFINTGAQ-TVVPPIP-GITTTPGVYDSTGLLNL------------------KELPGHLGIL 164 (441)
T ss_pred CEEEEEeCCCeEEEEeCEEEEcCCCc-CCCCCCC-CccCCCCEEChhHhhcc------------------cccCCeEEEE
Confidence 22322 2332 46799999999999 7778888 76555677765443321 2234579999
Q ss_pred cCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecc
Q psy16199 154 GAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ 228 (842)
Q Consensus 154 GgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~ 228 (842)
|+|++|+|+|..|.+.|.+ ||++++.+. .++..+.++ +.+.+.||++++++.++++..+++.+. +...
T Consensus 165 GgG~~g~E~A~~l~~~g~~-Vtli~~~~~-~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~-v~~~---- 237 (441)
T PRK08010 165 GGGYIGVEFASMFANFGSK-VTILEAASL-FLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQ-VHSE---- 237 (441)
T ss_pred CCCHHHHHHHHHHHHCCCe-EEEEecCCC-CCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEEc----
Confidence 9999999999999999875 999999864 455444432 345678999999999999974333321 2211
Q ss_pred cCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHH
Q psy16199 229 NEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVE 306 (842)
Q Consensus 229 ~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~ 306 (842)
++ ++++|.|++++|.+ |++.+ .+.+ |++++++|+|.|| ++++|++|+|||+|||++.+...+.
T Consensus 238 ---------~g---~i~~D~vl~a~G~~-pn~~~l~~~~~-gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~ 302 (441)
T PRK08010 238 ---------HA---QLAVDALLIASGRQ-PATASLHPENA-GIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYI 302 (441)
T ss_pred ---------CC---eEEeCEEEEeecCC-cCCCCcCchhc-CcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhH
Confidence 11 47899999999999 56553 3444 7889889999999 6799999999999999988889999
Q ss_pred HHHHHHHHHHHHH
Q psy16199 307 SVNDGKTAAWHIH 319 (842)
Q Consensus 307 A~~~G~~aA~~I~ 319 (842)
|..+|+.++.+|.
T Consensus 303 a~~~~~~~~~~~~ 315 (441)
T PRK08010 303 SLDDYRIVRDELL 315 (441)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999974
No 56
>PLN02546 glutathione reductase
Probab=99.93 E-value=3.5e-25 Score=257.87 Aligned_cols=220 Identities=22% Similarity=0.242 Sum_probs=162.4
Q ss_pred HHHHHHHhcCcEEEecee--eccccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCC
Q psy16199 56 FEVELVKDLGVKIECERS--LSTRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKG 133 (842)
Q Consensus 56 ~~~~~l~~~gV~i~~~~~--v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~ 133 (842)
++.+++++.||+++.+.. ++.+.+.++ +..+.||+||||||++ |+.+++| |+. .++++.+.+..
T Consensus 183 ~~~~~l~~~gV~~i~G~a~~vd~~~V~v~-G~~~~~D~LVIATGs~-p~~P~Ip-G~~---~v~~~~~~l~~-------- 248 (558)
T PLN02546 183 IYKNILKNAGVTLIEGRGKIVDPHTVDVD-GKLYTARNILIAVGGR-PFIPDIP-GIE---HAIDSDAALDL-------- 248 (558)
T ss_pred HHHHHHHhCCcEEEEeEEEEccCCEEEEC-CEEEECCEEEEeCCCC-CCCCCCC-Chh---hccCHHHHHhc--------
Confidence 344556778999998753 443445443 3456799999999999 7777887 542 34444333321
Q ss_pred ccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCc
Q psy16199 134 LCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSP 208 (842)
Q Consensus 134 ~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v 208 (842)
...+++|+|||||++|+|+|..|.+.|. +|+++++.+. .++..++++ +.+.+.||++++++.+
T Consensus 249 ----------~~~~k~V~VIGgG~iGvE~A~~L~~~g~-~Vtlv~~~~~-il~~~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 249 ----------PSKPEKIAIVGGGYIALEFAGIFNGLKS-DVHVFIRQKK-VLRGFDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred ----------cccCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeccc-cccccCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 2234569999999999999999999986 5999998863 455555543 3456789999999999
Q ss_pred eEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCC
Q psy16199 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMAT 286 (842)
Q Consensus 209 ~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~T 286 (842)
+++...++....+... +.....+|.||+++|++ |+.++ ++.+ |++++++|+|.|| ++++|
T Consensus 317 ~~i~~~~~g~v~v~~~---------------~g~~~~~D~Viva~G~~-Pnt~~L~le~~-gl~~d~~G~I~VD-~~l~T 378 (558)
T PLN02546 317 QAIIKSADGSLSLKTN---------------KGTVEGFSHVMFATGRK-PNTKNLGLEEV-GVKMDKNGAIEVD-EYSRT 378 (558)
T ss_pred EEEEEcCCCEEEEEEC---------------CeEEEecCEEEEeeccc-cCCCcCChhhc-CCcCCCCCcEeEC-CCcee
Confidence 9986422222222211 11245589999999999 56553 4565 8999989999999 68999
Q ss_pred CCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 287 SVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 287 s~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
++|+|||+|||+..+..+..|..||+.+|.+|.
T Consensus 379 s~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 379 SVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 411 (558)
T ss_pred CCCCEEEeeccCCCcccHHHHHHHHHHHHHHHc
Confidence 999999999999888889999999999999985
No 57
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.93 E-value=2.7e-24 Score=247.33 Aligned_cols=270 Identities=17% Similarity=0.209 Sum_probs=188.0
Q ss_pred cccccCceeeecceeEeecCCCCccccccCCC-----CCCCHHHHHHHHHHHHhcCcEEEeceeecc-----ccceecc-
Q psy16199 15 IEMSTAKVCLSKDLPDIERPVAALPDSSEIPQ-----YRLPFDAVNFEVELVKDLGVKIECERSLST-----RDITIEK- 83 (842)
Q Consensus 15 ~~~~~~~~~~g~~V~l~Ek~~~GG~~~~~iP~-----~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~- 83 (842)
+|.+.+|...+++|+|+|++..-+...+++|. +..+.+++.+..+.+++.|+++++++.|.. +.+.+.+
T Consensus 15 aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~ 94 (444)
T PRK09564 15 AAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNL 94 (444)
T ss_pred HHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEEC
Confidence 34455555567899999997322222233332 233445566666778889999988765532 3344432
Q ss_pred --ccccC--CCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhH
Q psy16199 84 --LRKDG--YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 159 (842)
Q Consensus 84 --~~~~~--yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g 159 (842)
..... ||+||||||++ ++.+++| |+ +.+++++..++.+........ ....+++|+|||||++|
T Consensus 95 ~~~~~~~~~yd~lviAtG~~-~~~~~i~-g~-~~~~v~~~~~~~~~~~l~~~l----------~~~~~~~vvVvGgG~~g 161 (444)
T PRK09564 95 KTGSIFNDTYDKLMIATGAR-PIIPPIK-NI-NLENVYTLKSMEDGLALKELL----------KDEEIKNIVIIGAGFIG 161 (444)
T ss_pred CCCCEEEecCCEEEECCCCC-CCCCCCC-Cc-CCCCEEEECCHHHHHHHHHHH----------hhcCCCEEEEECCCHHH
Confidence 22333 99999999998 7777887 64 446777654433221110000 01124569999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEeecCcccc-CCHHHH-----HHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCC
Q psy16199 160 FDCATSALRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGE 233 (842)
Q Consensus 160 ~e~A~~l~~~G~~~Vtlv~r~~~~~~~-~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~ 233 (842)
+|+|..+.+.|.+ |+++++.+. .++ ..++++ +.+.+.||++++++.++++. .++++..+...
T Consensus 162 ~e~A~~l~~~g~~-Vtli~~~~~-~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~-~~~~~~~v~~~--------- 229 (444)
T PRK09564 162 LEAVEAAKHLGKN-VRIIQLEDR-ILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI-GEDKVEGVVTD--------- 229 (444)
T ss_pred HHHHHHHHhcCCc-EEEEeCCcc-cCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEe-cCCcEEEEEeC---------
Confidence 9999999999864 999998764 233 233332 34567899999999999996 45554433321
Q ss_pred eeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC----------chh
Q psy16199 234 WVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL----------SDT 303 (842)
Q Consensus 234 ~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~----------~~~ 303 (842)
+. ++++|.|++|+|.. |+.++++.. |++++++|+|.|| ++++|+.|+|||+|||+.. +.+
T Consensus 230 -----~~--~i~~d~vi~a~G~~-p~~~~l~~~-gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~ 299 (444)
T PRK09564 230 -----KG--EYEADVVIVATGVK-PNTEFLEDT-GLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPL 299 (444)
T ss_pred -----CC--EEEcCEEEECcCCC-cCHHHHHhc-CccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccc
Confidence 11 58999999999999 778888887 8988888999999 5789999999999999752 346
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16199 304 TVESVNDGKTAAWHIH 319 (842)
Q Consensus 304 ~~~A~~~G~~aA~~I~ 319 (842)
...|..||+.+|.||.
T Consensus 300 ~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 300 ATTANKLGRMVGENLA 315 (444)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7899999999999985
No 58
>KOG0404|consensus
Probab=99.93 E-value=1.1e-24 Score=212.32 Aligned_cols=269 Identities=21% Similarity=0.275 Sum_probs=209.7
Q ss_pred ecceeEeecC-----CCCcccc--------ccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeecc----ccceec-cccc
Q psy16199 25 SKDLPDIERP-----VAALPDS--------SEIPQYRLPFDAVNFEVELVKDLGVKIECERSLST----RDITIE-KLRK 86 (842)
Q Consensus 25 g~~V~l~Ek~-----~~GG~~~--------~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~----~~v~~~-~~~~ 86 (842)
..+-+|||-- -+|||+. -|+|+.....++.+...++..++|.++++.++-.. +.+.+- +...
T Consensus 31 elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~ 110 (322)
T KOG0404|consen 31 ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARP 110 (322)
T ss_pred ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCc
Confidence 4557888873 4577763 25677777889999999999999999998875331 112221 2233
Q ss_pred cCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHH
Q psy16199 87 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATS 165 (842)
Q Consensus 87 ~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~ 165 (842)
...|+||+|||+. .+++.+| | +.++-| +++ ....|+-||+ ..+.+++| .+|||||++++|-|..
T Consensus 111 v~~~avI~atGAs-AkRl~~p-g--~ge~~f--------Wqr--GiSaCAVCDG-aapifrnk~laVIGGGDsA~EEA~f 175 (322)
T KOG0404|consen 111 VTADAVILATGAS-AKRLHLP-G--EGEGEF--------WQR--GISACAVCDG-AAPIFRNKPLAVIGGGDSAMEEALF 175 (322)
T ss_pred eeeeeEEEecccc-eeeeecC-C--CCcchH--------Hhc--ccchhhcccC-cchhhcCCeeEEEcCcHHHHHHHHH
Confidence 4699999999999 8888888 4 212211 222 2347999999 33456777 9999999999999999
Q ss_pred HHHcCCcEEEEEEeecCccccCCHHHHHHHH-hcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEE
Q psy16199 166 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAW-EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 244 (842)
Q Consensus 166 l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~-~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i 244 (842)
|.+.+. +|++++|++ .+++.....+++. ..+|++++++.+.+...+.+.+.++.+++.. +|++..+
T Consensus 176 Ltkyas-kVyii~Rrd--~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~----------tge~~dl 242 (322)
T KOG0404|consen 176 LTKYAS-KVYIIHRRD--HFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVK----------TGEETDL 242 (322)
T ss_pred HHhhcc-EEEEEEEhh--hhhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecc----------cCccccc
Confidence 999864 699999997 6666666666654 4599999999888887443556677777653 5777899
Q ss_pred ECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy16199 245 KANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL-SDTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 245 ~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~-~~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
+.+-+++++|.. |++.|++. .+++|++|+|++.|.+-.||+||+||+||+... .++++.|...|-+||....+||+
T Consensus 243 ~v~GlFf~IGH~-Pat~~l~g--qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 243 PVSGLFFAIGHS-PATKFLKG--QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLT 319 (322)
T ss_pred ccceeEEEecCC-chhhHhcC--ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhh
Confidence 999999999999 78899887 499999999999999999999999999999864 47889999999999999999997
Q ss_pred h
Q psy16199 324 E 324 (842)
Q Consensus 324 ~ 324 (842)
.
T Consensus 320 s 320 (322)
T KOG0404|consen 320 S 320 (322)
T ss_pred c
Confidence 4
No 59
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=1.2e-24 Score=251.35 Aligned_cols=255 Identities=18% Similarity=0.207 Sum_probs=179.4
Q ss_pred eecceeEeecCCCCccc--cccCCCCC--------------------------CCHHHHHH-----------HHHHHHhc
Q psy16199 24 LSKDLPDIERPVAALPD--SSEIPQYR--------------------------LPFDAVNF-----------EVELVKDL 64 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~--~~~iP~~~--------------------------~~~~~v~~-----------~~~~l~~~ 64 (842)
.|++|+|+|+..+||.. .-++|... ...++.++ ....+++.
T Consensus 26 ~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (462)
T PRK06416 26 LGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKN 105 (462)
T ss_pred CCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999998899963 22355311 11123333 23345678
Q ss_pred CcEEEeceeec--cccceec---cccccCCCEEEEccCCCCCCCCCCCCCCcc-ccCceehhcchHHHhhcccCCccCCC
Q psy16199 65 GVKIECERSLS--TRDITIE---KLRKDGYTAIFIGIGKPNANVIPIFQGLTE-EMGFYTSKTFLPRVATSSKKGLCGGC 138 (842)
Q Consensus 65 gV~i~~~~~v~--~~~v~~~---~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~-~~gv~~~~~~l~~~~~~~~~~~c~~c 138 (842)
||+++.++... .+.+++. +...+.||+||||||++ |+.+ | |+.. ...++++.+.+..
T Consensus 106 gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~-p~~~--p-g~~~~~~~v~~~~~~~~~------------- 168 (462)
T PRK06416 106 KVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSR-PREL--P-GIEIDGRVIWTSDEALNL------------- 168 (462)
T ss_pred CCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCC-CCCC--C-CCCCCCCeEEcchHhhCc-------------
Confidence 99999887432 1234443 12456799999999998 5543 3 4321 1235554333321
Q ss_pred CCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEc
Q psy16199 139 KKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV 213 (842)
Q Consensus 139 ~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~ 213 (842)
...+++|+|||||++|+|+|..|.+.|.+ ||++++.+. .++..++++ +.+.+.||++++++.++++..
T Consensus 169 -----~~~~~~vvVvGgG~~g~E~A~~l~~~g~~-Vtli~~~~~-~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~ 241 (462)
T PRK06416 169 -----DEVPKSLVVIGGGYIGVEFASAYASLGAE-VTIVEALPR-ILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQ 241 (462)
T ss_pred -----cccCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEEcCCC-cCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEE
Confidence 22345799999999999999999999975 999999874 455444332 235678999999999999974
Q ss_pred cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHH--hhcCCcccCCCCCeeeCCCCCCCCCCCe
Q psy16199 214 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL--EAIKPVKLDKYGYPEVNYTTMATSVPGV 291 (842)
Q Consensus 214 ~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~--~~l~gl~~~~~G~i~vd~~~~~Ts~~gV 291 (842)
+++.+. +.+.+ +++..++++|.||+++|.+ |+..++ +.. |++++ +|++.|| ++++|+.|+|
T Consensus 242 ~~~~v~-v~~~~------------gg~~~~i~~D~vi~a~G~~-p~~~~l~l~~~-gl~~~-~g~i~vd-~~~~t~~~~V 304 (462)
T PRK06416 242 TDDGVT-VTLED------------GGKEETLEADYVLVAVGRR-PNTENLGLEEL-GVKTD-RGFIEVD-EQLRTNVPNI 304 (462)
T ss_pred eCCEEE-EEEEe------------CCeeEEEEeCEEEEeeCCc-cCCCCCCchhc-CCeec-CCEEeEC-CCCccCCCCE
Confidence 333332 43332 1334579999999999999 566553 444 78888 8999999 6889999999
Q ss_pred EEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 292 FCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 292 fa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
||+|||+..+.++..|..||+.||.+|.
T Consensus 305 yAiGD~~~~~~~~~~A~~~g~~aa~ni~ 332 (462)
T PRK06416 305 YAIGDIVGGPMLAHKASAEGIIAAEAIA 332 (462)
T ss_pred EEeeecCCCcchHHHHHHHHHHHHHHHc
Confidence 9999999878889999999999999996
No 60
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.93 E-value=3.7e-24 Score=244.85 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=188.7
Q ss_pred cccccCceeeecceeEeecCCCCccccccCCCCC-----CCHHHHHHHHH-HHHhcCcEEEeceeecc-----ccceecc
Q psy16199 15 IEMSTAKVCLSKDLPDIERPVAALPDSSEIPQYR-----LPFDAVNFEVE-LVKDLGVKIECERSLST-----RDITIEK 83 (842)
Q Consensus 15 ~~~~~~~~~~g~~V~l~Ek~~~GG~~~~~iP~~~-----~~~~~v~~~~~-~l~~~gV~i~~~~~v~~-----~~v~~~~ 83 (842)
+|.+.++....++|||||++..-+...+++|.+. .+.+.+.+..+ ++++.|+++++++.|.. +.+.+.+
T Consensus 2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~ 81 (427)
T TIGR03385 2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRN 81 (427)
T ss_pred HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEE
Confidence 4566677777899999999743445555666542 23344444334 44888999988866642 2233332
Q ss_pred ---ccccC--CCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHH--hhcccCCccCCCCCCCCCCCCCcEEEEcCC
Q psy16199 84 ---LRKDG--YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRV--ATSSKKGLCGGCKKESLPILKGTVIVLGAG 156 (842)
Q Consensus 84 ---~~~~~--yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~--~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG 156 (842)
..... ||+||||||++ |+.+++| |+ +.+++++..+..... .... + ...+++|+|||||
T Consensus 82 ~~~~~~~~~~yd~lIiATG~~-p~~~~i~-G~-~~~~v~~~~~~~~~~~~~~~l--------~----~~~~~~vvViGgG 146 (427)
T TIGR03385 82 NKTNETYEESYDYLILSPGAS-PIVPNIE-GI-NLDIVFTLRNLEDTDAIKQYI--------D----KNKVENVVIIGGG 146 (427)
T ss_pred CCCCCEEecCCCEEEECCCCC-CCCCCCC-Cc-CCCCEEEECCHHHHHHHHHHH--------h----hcCCCeEEEECCC
Confidence 22334 99999999998 7878888 64 345666544332211 1100 0 1224569999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCC
Q psy16199 157 DTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK 231 (842)
Q Consensus 157 ~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~ 231 (842)
++|+|+|..|.+.|.+ |+++++.+....+..+.+ .+.+.+.||++++++.++++. .++.+ +.+.+
T Consensus 147 ~~g~e~A~~l~~~g~~-Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~-~~~~~--v~~~~------ 216 (427)
T TIGR03385 147 YIGIEMAEALRERGKN-VTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE-GEERV--KVFTS------ 216 (427)
T ss_pred HHHHHHHHHHHhCCCc-EEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEe-cCCCE--EEEcC------
Confidence 9999999999999875 999998874323333332 234567799999999999997 34433 23322
Q ss_pred CCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC----------c
Q psy16199 232 GEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL----------S 301 (842)
Q Consensus 232 G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~----------~ 301 (842)
|+ ++++|.||+++|.+ |+..+++.+ |++++++|+|.|| ++++|+.|+|||+|||+.. .
T Consensus 217 -------g~--~i~~D~vi~a~G~~-p~~~~l~~~-gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~ 284 (427)
T TIGR03385 217 -------GG--VYQADMVILATGIK-PNSELAKDS-GLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWV 284 (427)
T ss_pred -------CC--EEEeCEEEECCCcc-CCHHHHHhc-CcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceee
Confidence 22 68999999999999 787888887 8999989999999 5789999999999999752 2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16199 302 DTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 302 ~~~~~A~~~G~~aA~~I~ 319 (842)
.++..|..||+.||.+|.
T Consensus 285 ~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 285 PLAWGANKMGRIAGENIA 302 (427)
T ss_pred echHHHHHHHHHHHHHhc
Confidence 467899999999999984
No 61
>PLN02507 glutathione reductase
Probab=99.93 E-value=6.1e-25 Score=254.64 Aligned_cols=217 Identities=24% Similarity=0.265 Sum_probs=160.0
Q ss_pred HHHHhcCcEEEecee--ecccccee--cccc--ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccC
Q psy16199 59 ELVKDLGVKIECERS--LSTRDITI--EKLR--KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKK 132 (842)
Q Consensus 59 ~~l~~~gV~i~~~~~--v~~~~v~~--~~~~--~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~ 132 (842)
..+++.||+++.+.. ++...+.+ .++. .+.||+||||||++ |+.+++| |.. ..+++.+.+..
T Consensus 132 ~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~-p~~p~ip-G~~---~~~~~~~~~~l------- 199 (499)
T PLN02507 132 RLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR-AQRPNIP-GKE---LAITSDEALSL------- 199 (499)
T ss_pred HHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC-CCCCCCC-Ccc---ceechHHhhhh-------
Confidence 334557999998853 33223333 3333 35789999999998 7777887 532 23343333221
Q ss_pred CccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHH-----HHHhcCcEEecCCC
Q psy16199 133 GLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMS 207 (842)
Q Consensus 133 ~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~-----~~~~~gV~i~~~~~ 207 (842)
...+++|+|||||++|+|+|..+.+.|.+ ||++++.++ .++..++++. .+.+.||++++++.
T Consensus 200 -----------~~~~k~vvVIGgG~ig~E~A~~l~~~G~~-Vtli~~~~~-~l~~~d~~~~~~l~~~l~~~GI~i~~~~~ 266 (499)
T PLN02507 200 -----------EELPKRAVVLGGGYIAVEFASIWRGMGAT-VDLFFRKEL-PLRGFDDEMRAVVARNLEGRGINLHPRTN 266 (499)
T ss_pred -----------hhcCCeEEEECCcHHHHHHHHHHHHcCCe-EEEEEecCC-cCcccCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 22346799999999999999999999865 999999874 4454544432 46678999999999
Q ss_pred ceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCC
Q psy16199 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMA 285 (842)
Q Consensus 208 v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~ 285 (842)
++++...++.+. +.+. +| .++++|.|++++|++ |+..+ ++.+ |++++++|+|.|| ++++
T Consensus 267 V~~i~~~~~~~~-v~~~-------------~g--~~i~~D~vl~a~G~~-pn~~~l~l~~~-gl~~~~~G~I~Vd-~~~~ 327 (499)
T PLN02507 267 LTQLTKTEGGIK-VITD-------------HG--EEFVADVVLFATGRA-PNTKRLNLEAV-GVELDKAGAVKVD-EYSR 327 (499)
T ss_pred EEEEEEeCCeEE-EEEC-------------CC--cEEEcCEEEEeecCC-CCCCCCCchhh-CcEECCCCcEecC-CCCc
Confidence 999974333332 3322 12 369999999999999 56554 4555 7899989999999 6889
Q ss_pred CCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 286 TSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 286 Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|+.|+|||+|||+..+..++.|..||+.||.+|.
T Consensus 328 Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 328 TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVF 361 (499)
T ss_pred CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHc
Confidence 9999999999999877889999999999999984
No 62
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=1.1e-24 Score=249.83 Aligned_cols=255 Identities=21% Similarity=0.236 Sum_probs=183.8
Q ss_pred eeecceeEeecC--CCCcc--ccccCCCCCC---------CHHHHH-----------HHHHHHHhcCcEEEeceee--cc
Q psy16199 23 CLSKDLPDIERP--VAALP--DSSEIPQYRL---------PFDAVN-----------FEVELVKDLGVKIECERSL--ST 76 (842)
Q Consensus 23 ~~g~~V~l~Ek~--~~GG~--~~~~iP~~~~---------~~~~v~-----------~~~~~l~~~gV~i~~~~~v--~~ 76 (842)
.+|++|+|+||. .+||. ...++|.+.+ ..+++. ...+++++.||+++.++.. +.
T Consensus 24 ~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~ 103 (438)
T PRK07251 24 SAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSN 103 (438)
T ss_pred hCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC
Confidence 379999999997 37996 3345775542 112221 2235567789999888742 21
Q ss_pred ccceecc---ccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEE
Q psy16199 77 RDITIEK---LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVL 153 (842)
Q Consensus 77 ~~v~~~~---~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVI 153 (842)
+.+.+.. ...+.||+||||||++ |+.+++| |+.+.++++++.+++.. ...+++|+||
T Consensus 104 ~~v~v~~~~~~~~~~~d~vViATGs~-~~~p~i~-G~~~~~~v~~~~~~~~~------------------~~~~~~vvII 163 (438)
T PRK07251 104 KVIEVQAGDEKIELTAETIVINTGAV-SNVLPIP-GLADSKHVYDSTGIQSL------------------ETLPERLGII 163 (438)
T ss_pred CEEEEeeCCCcEEEEcCEEEEeCCCC-CCCCCCC-CcCCCCcEEchHHHhcc------------------hhcCCeEEEE
Confidence 3344432 2346799999999998 8888888 66556677776554431 2235679999
Q ss_pred cCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecc
Q psy16199 154 GAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ 228 (842)
Q Consensus 154 GgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~ 228 (842)
|||++|+|+|..+++.|.+ |+++++.+. .++..++++ +.+.+.||++++++.++++..+++.+ .+..
T Consensus 164 GgG~~g~e~A~~l~~~g~~-Vtli~~~~~-~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v---~v~~--- 235 (438)
T PRK07251 164 GGGNIGLEFAGLYNKLGSK-VTVLDAAST-ILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQV---LVVT--- 235 (438)
T ss_pred CCCHHHHHHHHHHHHcCCe-EEEEecCCc-cCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEE---EEEE---
Confidence 9999999999999999875 999999874 444444332 23557799999999999997433332 2221
Q ss_pred cCCCCeeccCCceEEEECCEEEEccccCcCChhHH--hhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHH
Q psy16199 229 NEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL--EAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVE 306 (842)
Q Consensus 229 ~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~--~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~ 306 (842)
++ .++++|.||+|+|.+ |+.+.+ +.. ++.++++|++.|| ++++|+.|+|||+|||++++...+.
T Consensus 236 ---------~g--~~i~~D~viva~G~~-p~~~~l~l~~~-~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~ 301 (438)
T PRK07251 236 ---------ED--ETYRFDALLYATGRK-PNTEPLGLENT-DIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYI 301 (438)
T ss_pred ---------CC--eEEEcCEEEEeeCCC-CCcccCCchhc-CcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhH
Confidence 12 368999999999999 555432 233 6777888999999 6899999999999999988888999
Q ss_pred HHHHHHHHHHHHH
Q psy16199 307 SVNDGKTAAWHIH 319 (842)
Q Consensus 307 A~~~G~~aA~~I~ 319 (842)
|..+|+.++.++.
T Consensus 302 a~~~~~~~~~~~~ 314 (438)
T PRK07251 302 SLDDFRIVFGYLT 314 (438)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999887764
No 63
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.92 E-value=1.6e-24 Score=250.38 Aligned_cols=220 Identities=20% Similarity=0.240 Sum_probs=163.5
Q ss_pred HHHHHhcCcEEEeceee--cccccee--ccc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhccc
Q psy16199 58 VELVKDLGVKIECERSL--STRDITI--EKL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 131 (842)
Q Consensus 58 ~~~l~~~gV~i~~~~~v--~~~~v~~--~~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~ 131 (842)
.+++++.+|+++.++.. +.+.+++ .++ ..+.||+||||||+. |+.++++ +. +.++++++.+++..
T Consensus 101 ~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~-p~~p~~~-~~-~~~~v~~~~~~~~~------ 171 (461)
T PRK05249 101 RGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSR-PYRPPDV-DF-DHPRIYDSDSILSL------ 171 (461)
T ss_pred HHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCC-CCCCCCC-CC-CCCeEEcHHHhhch------
Confidence 34566789999988752 2223333 222 246799999999998 7766766 32 34567766554432
Q ss_pred CCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCC
Q psy16199 132 KGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFM 206 (842)
Q Consensus 132 ~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~ 206 (842)
...+++|+|||||++|+|+|..+++.|.+ ||++++++. .++..+.++ +.+.+.||++++++
T Consensus 172 ------------~~~~~~v~IiGgG~~g~E~A~~l~~~g~~-Vtli~~~~~-~l~~~d~~~~~~l~~~l~~~gI~v~~~~ 237 (461)
T PRK05249 172 ------------DHLPRSLIIYGAGVIGCEYASIFAALGVK-VTLINTRDR-LLSFLDDEISDALSYHLRDSGVTIRHNE 237 (461)
T ss_pred ------------hhcCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCC-cCCcCCHHHHHHHHHHHHHcCCEEEECC
Confidence 22356799999999999999999999975 999999874 455444432 34567799999999
Q ss_pred CceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCC
Q psy16199 207 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTM 284 (842)
Q Consensus 207 ~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~ 284 (842)
.++++...++.+. +++. +| .++++|.|++|+|.+ |+..+ ++.+ |++++++|++.|| +++
T Consensus 238 ~v~~i~~~~~~~~-v~~~-------------~g--~~i~~D~vi~a~G~~-p~~~~l~l~~~-g~~~~~~G~i~vd-~~~ 298 (461)
T PRK05249 238 EVEKVEGGDDGVI-VHLK-------------SG--KKIKADCLLYANGRT-GNTDGLNLENA-GLEADSRGQLKVN-ENY 298 (461)
T ss_pred EEEEEEEeCCeEE-EEEC-------------CC--CEEEeCEEEEeecCC-ccccCCCchhh-CcEecCCCcEeeC-CCc
Confidence 9999874333332 3322 12 268999999999999 56553 3455 7899999999999 789
Q ss_pred CCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 285 ATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 285 ~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+|+.|+|||+|||+..+..+..|..||+.||.+|.
T Consensus 299 ~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 299 QTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred ccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 99999999999999878889999999999999985
No 64
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.92 E-value=8.5e-24 Score=250.59 Aligned_cols=279 Identities=19% Similarity=0.224 Sum_probs=212.7
Q ss_pred CcccccccCceee-----------------ecceeEeecC-----------------------------CCCccccccCC
Q psy16199 12 PPDIEMSTAKVCL-----------------SKDLPDIERP-----------------------------VAALPDSSEIP 45 (842)
Q Consensus 12 ~~~~~~~~~~~~~-----------------g~~V~l~Ek~-----------------------------~~GG~~~~~iP 45 (842)
|.+++.++|||-. ||+|||||+. .+||+..|+||
T Consensus 376 ~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp 455 (1028)
T PRK06567 376 PLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT 455 (1028)
T ss_pred CCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc
Confidence 4456678888875 9999999973 28899999999
Q ss_pred CCCCCHHHHHHHHHHHHhc--CcEEEeceeeccccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcch
Q psy16199 46 QYRLPFDAVNFEVELVKDL--GVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFL 123 (842)
Q Consensus 46 ~~~~~~~~v~~~~~~l~~~--gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l 123 (842)
++++++.++. .+.+.+. +++++.|+.++ ++++.+++...+||+||||||+..++.+++| | .+..+|+++.+||
T Consensus 456 -~R~~k~~l~~-i~~il~~g~~v~~~~gv~lG-~dit~edl~~~gyDAV~IATGA~kpr~L~IP-G-eda~GV~sA~DfL 530 (1028)
T PRK06567 456 -VRWDKNNLDI-LRLILERNNNFKYYDGVALD-FNITKEQAFDLGFDHIAFCIGAGQPKVLDIE-N-FEAKGVKTASDFL 530 (1028)
T ss_pred -ccchHHHHHH-HHHHHhcCCceEEECCeEEC-ccCCHHHHhhcCCCEEEEeCCCCCCCCCCCC-C-ccCCCeEEHHHHH
Confidence 8999987766 3444444 47777799998 8888888777789999999999669999999 6 4679999999999
Q ss_pred HHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHH-----------------------------------
Q psy16199 124 PRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALR----------------------------------- 168 (842)
Q Consensus 124 ~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~----------------------------------- 168 (842)
..++..... ..........+.+|||||||++|+|+|..+.+
T Consensus 531 ~~l~~~~~~----~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 531 MTLQSGGAF----LKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred HHHhhcccc----cccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence 876542100 00010112234459999999999999995543
Q ss_pred ----------------cCCcEEEEEEeecCccccCC---HHHHHHHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeecc
Q psy16199 169 ----------------CGANKVLVVFRKGCTNIRAV---PEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ 228 (842)
Q Consensus 169 ----------------~G~~~Vtlv~r~~~~~~~~~---~~~~~~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~~ 228 (842)
.| . ||+++|+....+|+. .+|++.+.++||+|+.+..+.++.. ++|+++++++.....
T Consensus 607 ~g~~~~~~~v~~l~~~~G-~-VtIvYRr~~~empA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~ 684 (1028)
T PRK06567 607 FKEAKNNEELRKVFNKLG-G-ATVYYRGRLQDSPAYKLNHEELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNR 684 (1028)
T ss_pred hcchhccchhhhhhccCC-c-eEEEecCChhhCCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEec
Confidence 22 2 999999998899985 7889999999999999999999975 358999999875431
Q ss_pred ---------cC----CCCe--eccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEE
Q psy16199 229 ---------NE----KGEW--VEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFC 293 (842)
Q Consensus 229 ---------~~----~G~~--~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa 293 (842)
+. .|+. .+..+++.+++||.||+|+|.. +++.+.. .+ .++-++.+++|+
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~-~~~~~~~--------------~~-~s~~~d~~~~f~ 748 (1028)
T PRK06567 685 HCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE-NNTQFDE--------------DK-YSYFGDCNPKYS 748 (1028)
T ss_pred ccccccccccccccccCCcCcccCCCccccccCCEEEEecccC-Ccccccc--------------cc-cccccCCCCccc
Confidence 11 1222 2345577899999999999999 6655421 11 245667788887
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 294 GGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 294 ~GD~~~~~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
+ +++.|+++|+.++.+|.++|...
T Consensus 749 G--------tvv~A~as~k~~~~~i~~~l~~~ 772 (1028)
T PRK06567 749 G--------SVVKALASSKEGYDAINKKLINN 772 (1028)
T ss_pred c--------HHHHHHHHHHhHHHHHHHHHhhC
Confidence 6 79999999999999999999764
No 65
>PRK10262 thioredoxin reductase; Provisional
Probab=99.92 E-value=1.4e-24 Score=238.92 Aligned_cols=266 Identities=18% Similarity=0.195 Sum_probs=185.6
Q ss_pred eecceeEeecCCCCccccc-----cCCCC---CCCHHHHHHHHHHHHhcCcEEEeceeec--c--ccceecc-ccccCCC
Q psy16199 24 LSKDLPDIERPVAALPDSS-----EIPQY---RLPFDAVNFEVELVKDLGVKIECERSLS--T--RDITIEK-LRKDGYT 90 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~~~-----~iP~~---~~~~~~v~~~~~~l~~~gV~i~~~~~v~--~--~~v~~~~-~~~~~yd 90 (842)
+|++|++||+...||.+.. .+|.. ....++.++..+++..++++++.++... . ..+++.. ...+.||
T Consensus 28 ~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d 107 (321)
T PRK10262 28 ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCD 107 (321)
T ss_pred CCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEEC
Confidence 5899999998788987532 22322 1223556677777888888877764322 1 1122221 1245699
Q ss_pred EEEEccCCCCCCCCCCCCCCccc--cCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHH
Q psy16199 91 AIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALR 168 (842)
Q Consensus 91 ~lVlAtGs~~~~~~~i~~G~~~~--~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~ 168 (842)
+||||||+. ++.+++| |.... .+++ +|..|+.. ...+++|+|||+|++|+|+|..|.+
T Consensus 108 ~vilAtG~~-~~~~~i~-g~~~~~~~~v~----------------~~~~~~~~--~~~g~~vvVvGgG~~g~e~A~~l~~ 167 (321)
T PRK10262 108 ALIIATGAS-ARYLGLP-SEEAFKGRGVS----------------ACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSN 167 (321)
T ss_pred EEEECCCCC-CCCCCCC-CHHHcCCCcEE----------------EeecCCHH--HcCCCEEEEECCCHHHHHHHHHHHh
Confidence 999999998 7878887 53221 1221 22233331 1223459999999999999999999
Q ss_pred cCCcEEEEEEeecCccccCCHH----HHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEE
Q psy16199 169 CGANKVLVVFRKGCTNIRAVPE----EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 244 (842)
Q Consensus 169 ~G~~~Vtlv~r~~~~~~~~~~~----~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i 244 (842)
.+. +||+++|++. +...+. ..+.+.+.||++++++.++++..+++++.+|++.+... +++..++
T Consensus 168 ~~~-~Vtlv~~~~~--~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~---------~~~~~~i 235 (321)
T PRK10262 168 IAS-EVHLIHRRDG--FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESL 235 (321)
T ss_pred hCC-EEEEEEECCc--cCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCC---------CCeEEEE
Confidence 975 5999999863 222222 22334567999999999999975444677777765320 1234579
Q ss_pred ECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCC----CCCCCCCCCeEEeccCCCC-chhHHHHHHHHHHHHHHHH
Q psy16199 245 KANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNY----TTMATSVPGVFCGGDTANL-SDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 245 ~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~----~~~~Ts~~gVfa~GD~~~~-~~~~~~A~~~G~~aA~~I~ 319 (842)
++|.||+++|++ |+..++.. ++.++ +|+|.+|+ ++++|++|+|||+|||+.. ..++..|+.+|..||..|+
T Consensus 236 ~~D~vv~a~G~~-p~~~l~~~--~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 236 DVAGLFVAIGHS-PNTAIFEG--QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred ECCEEEEEeCCc-cChhHhhc--ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 999999999999 67777654 46554 58999995 2589999999999999864 4677789999999999999
Q ss_pred HHHHhc
Q psy16199 320 KYIQEK 325 (842)
Q Consensus 320 ~~L~~~ 325 (842)
++|.+.
T Consensus 312 ~~l~~~ 317 (321)
T PRK10262 312 RYLDGL 317 (321)
T ss_pred HHHHhc
Confidence 999764
No 66
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.92 E-value=7.1e-25 Score=238.64 Aligned_cols=170 Identities=20% Similarity=0.295 Sum_probs=148.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCC-CCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPH-GMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~-~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++|+. |.+++++.++++.+++.|+|+||||+|||+ .....+.|+++.++|+.+.++++++++.+++||.+|++..
T Consensus 65 ~~~~vQl~-g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G 143 (321)
T PRK10415 65 GIRTVQIA-GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG 143 (321)
T ss_pred CCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 68899995 789999999999988889999999999994 3456788999999999999999999999999999999643
Q ss_pred h----hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCc
Q psy16199 643 I----TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFP 718 (842)
Q Consensus 643 ~----~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ip 718 (842)
+ .+..++++.++++|+|+|+++++ +..+.++|++. +++++++++.+ ++|
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d~i~vh~r----------------------t~~~~~~G~a~----~~~i~~ik~~~-~iP 196 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQALTIHGR----------------------TRACLFNGEAE----YDSIRAVKQKV-SIP 196 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCCEEEEecC----------------------ccccccCCCcC----hHHHHHHHHhc-CCc
Confidence 3 36789999999999999999654 23345666554 89999999998 799
Q ss_pred EEEecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhHHHHHHH
Q psy16199 719 ILGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
||++|||.|++|+.+++. .|||+||+||+++. +|+++.++.+.
T Consensus 197 VI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~-nP~if~~~~~~ 240 (321)
T PRK10415 197 VIANGDITDPLKARAVLDYTGADALMIGRAAQG-RPWIFREIQHY 240 (321)
T ss_pred EEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc-CChHHHHHHHH
Confidence 999999999999999997 79999999999995 59999887543
No 67
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.92 E-value=1.1e-23 Score=243.40 Aligned_cols=195 Identities=18% Similarity=0.214 Sum_probs=145.6
Q ss_pred ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHH
Q psy16199 86 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 165 (842)
Q Consensus 86 ~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~ 165 (842)
.+.||+||||||+. |+.+ | |+.....+++..+.+. . ...+++|+|||||++|+|+|..
T Consensus 133 ~~~~d~lViATGs~-p~~~--p-g~~~~~~v~~~~~~~~---~---------------~~~~~~vvVIGgG~ig~E~A~~ 190 (466)
T PRK07818 133 TVTFDNAIIATGSS-TRLL--P-GTSLSENVVTYEEQIL---S---------------RELPKSIVIAGAGAIGMEFAYV 190 (466)
T ss_pred EEEcCEEEEeCCCC-CCCC--C-CCCCCCcEEchHHHhc---c---------------ccCCCeEEEECCcHHHHHHHHH
Confidence 45799999999998 6543 3 4322234555432211 0 2235679999999999999999
Q ss_pred HHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCc
Q psy16199 166 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 240 (842)
Q Consensus 166 l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~ 240 (842)
+++.|.+ |+++++.++ .++..+.++ +.+.+.||++++++.++++..+++.+ .+.+... +|+
T Consensus 191 l~~~G~~-Vtlv~~~~~-~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~-----------~g~ 256 (466)
T PRK07818 191 LKNYGVD-VTIVEFLDR-ALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKV-TVTVSKK-----------DGK 256 (466)
T ss_pred HHHcCCe-EEEEecCCC-cCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeE-EEEEEec-----------CCC
Confidence 9999975 999998874 455544432 34567899999999999997433322 3444310 234
Q ss_pred eEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHH
Q psy16199 241 RIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318 (842)
Q Consensus 241 ~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I 318 (842)
..++++|.||+++|++ |+.++ ++.. |++++++|+|.|| ++++|+.|+|||+|||+..+.+++.|..||+.||.+|
T Consensus 257 ~~~i~~D~vi~a~G~~-pn~~~l~l~~~-g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i 333 (466)
T PRK07818 257 AQELEADKVLQAIGFA-PRVEGYGLEKT-GVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETI 333 (466)
T ss_pred eEEEEeCEEEECcCcc-cCCCCCCchhc-CcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHH
Confidence 4579999999999999 56553 3455 7888888999999 6899999999999999987889999999999999998
Q ss_pred H
Q psy16199 319 H 319 (842)
Q Consensus 319 ~ 319 (842)
.
T Consensus 334 ~ 334 (466)
T PRK07818 334 A 334 (466)
T ss_pred c
Confidence 5
No 68
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.92 E-value=6.2e-24 Score=249.60 Aligned_cols=263 Identities=22% Similarity=0.245 Sum_probs=187.7
Q ss_pred eecceeEeecCCCCccccc--cC---CCCC--CCHHHHHHHHHHHHhcCcEEEeceeecc------ccceeccccccCCC
Q psy16199 24 LSKDLPDIERPVAALPDSS--EI---PQYR--LPFDAVNFEVELVKDLGVKIECERSLST------RDITIEKLRKDGYT 90 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~~~--~i---P~~~--~~~~~v~~~~~~l~~~gV~i~~~~~v~~------~~v~~~~~~~~~yd 90 (842)
.|++|+|+|++.+||++.. .+ |... .+.+++++..++++++|++++.++.... ..+...+. ...|+
T Consensus 26 ~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~ 104 (555)
T TIGR03143 26 AKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTL 104 (555)
T ss_pred CCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEe
Confidence 6899999999989998642 22 3322 3357788888888999999875443321 01222222 34588
Q ss_pred EEEEccCCCCCCCCCCCCCCccc--cCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHH
Q psy16199 91 AIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALR 168 (842)
Q Consensus 91 ~lVlAtGs~~~~~~~i~~G~~~~--~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~ 168 (842)
+||||||++ ++.+++| |.... .++ .+|..|+.. ....++|+|||||++|+|+|..|.+
T Consensus 105 ~lVlATGa~-p~~~~ip-G~~~~~~~~v----------------~~~~~~~~~--~~~g~~VvVIGgG~~g~E~A~~L~~ 164 (555)
T TIGR03143 105 AVLIATGAS-PRKLGFP-GEEEFTGRGV----------------AYCATCDGE--FFTGMDVFVIGGGFAAAEEAVFLTR 164 (555)
T ss_pred EEEECCCCc-cCCCCCC-CHHHhCCceE----------------EEEeecChh--hcCCCEEEEECCCHHHHHHHHHHHc
Confidence 999999998 8888888 53221 112 133444431 1223459999999999999999999
Q ss_pred cCCcEEEEEEeecCccccCCHHHHHHHHh-cCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEE--EE
Q psy16199 169 CGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK--LK 245 (842)
Q Consensus 169 ~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~-~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~--i~ 245 (842)
.|. +||++++.+. +.........+.+ .||++++++.++++. +++++..+.+.+.. +|+..+ ++
T Consensus 165 ~g~-~Vtli~~~~~--~~~~~~~~~~~~~~~gV~i~~~~~V~~i~-~~~~v~~v~~~~~~----------~G~~~~~~~~ 230 (555)
T TIGR03143 165 YAS-KVTVIVREPD--FTCAKLIAEKVKNHPKIEVKFNTELKEAT-GDDGLRYAKFVNNV----------TGEITEYKAP 230 (555)
T ss_pred cCC-EEEEEEeCCc--cccCHHHHHHHHhCCCcEEEeCCEEEEEE-cCCcEEEEEEEECC----------CCCEEEEecc
Confidence 886 5999999863 2223333444444 599999999999997 45556555554321 233333 34
Q ss_pred CCE----EEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC-chhHHHHHHHHHHHHHHHHH
Q psy16199 246 ANY----IISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL-SDTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 246 ~D~----Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~-~~~~~~A~~~G~~aA~~I~~ 320 (842)
+|. |++++|++ |++.+++. +++++++|+|.|| ++++|++|+|||+|||+.. +..+..|+.||+.||.+|++
T Consensus 231 ~D~~~~~Vi~a~G~~-Pn~~l~~~--~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~ 306 (555)
T TIGR03143 231 KDAGTFGVFVFVGYA-PSSELFKG--VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAER 306 (555)
T ss_pred ccccceEEEEEeCCC-CChhHHhh--hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHH
Confidence 776 99999999 78788775 4788888999999 6899999999999999753 45678999999999999999
Q ss_pred HHHhc
Q psy16199 321 YIQEK 325 (842)
Q Consensus 321 ~L~~~ 325 (842)
||.+.
T Consensus 307 ~l~~~ 311 (555)
T TIGR03143 307 YVKEL 311 (555)
T ss_pred HHHhh
Confidence 99764
No 69
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.92 E-value=3.4e-24 Score=246.13 Aligned_cols=214 Identities=17% Similarity=0.233 Sum_probs=157.6
Q ss_pred cCcEEEeceee--ccccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCC
Q psy16199 64 LGVKIECERSL--STRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKE 141 (842)
Q Consensus 64 ~gV~i~~~~~v--~~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~ 141 (842)
.||+++.++.+ +.+.|.+.++..+.||+||||||++ |+.++++++ ....+.++.+.+..
T Consensus 105 ~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~-p~~p~~~~~--~~~~~~~~~~~~~l---------------- 165 (452)
T TIGR03452 105 PNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSR-PYIPPAIAD--SGVRYHTNEDIMRL---------------- 165 (452)
T ss_pred CCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCC-CCCCCCCCC--CCCEEEcHHHHHhh----------------
Confidence 68999887644 2244556555556799999999999 665554311 11224444433321
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHH----HHHhcCcEEecCCCceEEEccCCc
Q psy16199 142 SLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVKDNK 217 (842)
Q Consensus 142 ~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~----~~~~~gV~i~~~~~v~~v~~~~~~ 217 (842)
...+++++|||||++|+|+|..|.+.|.+ ||++++.+. .++..++++. .+.+.+|++++++.++++..+++.
T Consensus 166 --~~~~k~vvVIGgG~ig~E~A~~l~~~G~~-Vtli~~~~~-ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~ 241 (452)
T TIGR03452 166 --PELPESLVIVGGGYIAAEFAHVFSALGTR-VTIVNRSTK-LLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDG 241 (452)
T ss_pred --hhcCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccCc-cccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCe
Confidence 22356799999999999999999999975 999999874 3444444332 334568999999999998743333
Q ss_pred EEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHH--hhcCCcccCCCCCeeeCCCCCCCCCCCeEEec
Q psy16199 218 IAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL--EAIKPVKLDKYGYPEVNYTTMATSVPGVFCGG 295 (842)
Q Consensus 218 v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~--~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~G 295 (842)
+. +++. +| .++++|.|++++|++ |+.+++ +.+ |++++++|+|.|| ++++|+.|+|||+|
T Consensus 242 v~-v~~~-------------~g--~~i~~D~vl~a~G~~-pn~~~l~~~~~-gl~~~~~G~i~vd-~~~~Ts~~~IyA~G 302 (452)
T TIGR03452 242 VT-LTLD-------------DG--STVTADVLLVATGRV-PNGDLLDAEAA-GVEVDEDGRIKVD-EYGRTSARGVWALG 302 (452)
T ss_pred EE-EEEc-------------CC--CEEEcCEEEEeeccC-cCCCCcCchhc-CeeECCCCcEeeC-CCcccCCCCEEEee
Confidence 32 3332 12 269999999999999 666653 444 8999999999999 68899999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 296 DTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 296 D~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
||+..+...+.|..||+.||.+|.
T Consensus 303 D~~~~~~l~~~A~~~g~~~a~ni~ 326 (452)
T TIGR03452 303 DVSSPYQLKHVANAEARVVKHNLL 326 (452)
T ss_pred cccCcccChhHHHHHHHHHHHHhc
Confidence 999877888999999999999985
No 70
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.92 E-value=5.9e-24 Score=257.96 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=185.3
Q ss_pred eecceeEeecCCCCccccccCCCC---CCCHHHHHHHHHHHHhcCcEEEeceeecc-----ccceeccccccCCCEEEEc
Q psy16199 24 LSKDLPDIERPVAALPDSSEIPQY---RLPFDAVNFEVELVKDLGVKIECERSLST-----RDITIEKLRKDGYTAIFIG 95 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~~~~iP~~---~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~~~~yd~lVlA 95 (842)
.+++||||+++..-+..+..++.+ ....++.....+++++.||++++++.+.. +.|..+++..+.||+||||
T Consensus 29 ~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIA 108 (847)
T PRK14989 29 ANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMA 108 (847)
T ss_pred CCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEEC
Confidence 578999999973223222223222 22334444445678889999999975532 2344455556789999999
Q ss_pred cCCCCCCCCCCCCCCccccCceeh--hcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcE
Q psy16199 96 IGKPNANVIPIFQGLTEEMGFYTS--KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANK 173 (842)
Q Consensus 96 tGs~~~~~~~i~~G~~~~~gv~~~--~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~ 173 (842)
||+. |+.+++| |. +.+++++. .+.+..+... ....++++|||||++|+|+|..|.+.|.+
T Consensus 109 TGs~-p~~p~ip-G~-~~~~v~~~rt~~d~~~l~~~--------------~~~~k~vvVIGgG~iGlE~A~~L~~~G~~- 170 (847)
T PRK14989 109 TGSY-PWIPPIK-GS-ETQDCFVYRTIEDLNAIEAC--------------ARRSKRGAVVGGGLLGLEAAGALKNLGVE- 170 (847)
T ss_pred CCCC-cCCCCCC-CC-CCCCeEEECCHHHHHHHHHH--------------HhcCCeEEEECCCHHHHHHHHHHHHcCCe-
Confidence 9998 8888888 64 45665542 2222222111 12235699999999999999999999975
Q ss_pred EEEEEeecCcccc-CCHHH-----HHHHHhcCcEEecCCCceEEEcc-CCcEEEEEEEeecccCCCCeeccCCceEEEEC
Q psy16199 174 VLVVFRKGCTNIR-AVPEE-----VQLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA 246 (842)
Q Consensus 174 Vtlv~r~~~~~~~-~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~-~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~ 246 (842)
|+|+++.+. .++ ..+++ .+.+.+.||+++++..++++..+ ++....+.+.+ | .++++
T Consensus 171 VtvVe~~~~-ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-------------G--~~i~~ 234 (847)
T PRK14989 171 THVIEFAPM-LMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-------------G--SELEV 234 (847)
T ss_pred EEEEecccc-chhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC-------------C--CEEEc
Confidence 999999874 333 23332 23456789999999999999632 23344455543 2 26999
Q ss_pred CEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc----hhHHHHHHHHHHHHHHHH
Q psy16199 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS----DTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 247 D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~----~~~~~A~~~G~~aA~~I~ 319 (842)
|.||+++|.+ |+..|++.. |++++++|+|.|| ++++|+.|+|||+|||+... ..+..|..+|+.||.+|.
T Consensus 235 D~Vv~A~G~r-Pn~~L~~~~-Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~ 308 (847)
T PRK14989 235 DFIVFSTGIR-PQDKLATQC-GLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL 308 (847)
T ss_pred CEEEECCCcc-cCchHHhhc-CccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc
Confidence 9999999999 677788776 8999999999999 68999999999999998653 367789999999999885
No 71
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.92 E-value=4.2e-24 Score=230.72 Aligned_cols=170 Identities=20% Similarity=0.237 Sum_probs=149.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCC-CCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEec
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPH-GMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLT 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~-~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~ 640 (842)
.|+++||. |.+++++.++|+++++.|+|+||||++||+ .....|.|++++++++.+.++++++++.+ ++||+||++
T Consensus 63 ~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 63 TLVRIQLL-GQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 79999996 789999999999999999999999999994 34567889999999999999999999988 499999998
Q ss_pred CChh---cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCC
Q psy16199 641 PNIT---NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 641 p~~~---~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~i 717 (842)
.+++ +..++++.++++|+|.|+++. ++..++|+|++. -++.++++++.+ ++
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~----------------------Rt~~~~y~g~~~---~~~~i~~ik~~~-~i 195 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHG----------------------RTKEDGYRAEHI---NWQAIGEIRQRL-TI 195 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECC----------------------CCCccCCCCCcc---cHHHHHHHHhhc-CC
Confidence 7653 477999999999999999954 344567888653 378899999998 79
Q ss_pred cEEEecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhHHHHHH
Q psy16199 718 PILGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVVDDYIT 761 (842)
Q Consensus 718 pIi~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~i~~ 761 (842)
|||+||||.|++|+.+++. .|||+|||||+++. +|++|+++..
T Consensus 196 PVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~-nP~lf~~~~~ 239 (312)
T PRK10550 196 PVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN-IPNLSRVVKY 239 (312)
T ss_pred cEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh-CcHHHHHhhc
Confidence 9999999999999999996 89999999999995 4999998753
No 72
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3e-24 Score=232.67 Aligned_cols=168 Identities=23% Similarity=0.341 Sum_probs=154.4
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTP 641 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p 641 (842)
.|+++||. |++++.+.++++.+++.|+|.|+||++|| ....+.+.|++|+++|+.+.++++++++++ ++||+||++-
T Consensus 67 ~p~~vQl~-gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 67 RPVAVQLG-GSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 79999995 78999999999999999999999999999 667788999999999999999999999999 5999999987
Q ss_pred Chhc----HHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCC
Q psy16199 642 NITN----ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 642 ~~~~----~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~i 717 (842)
.+++ ..+++++++++|++.|++ |+|+.+.+++|++. +++|+++++.++++
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltV----------------------HgRtr~~~y~~~ad----~~~I~~vk~~~~~i 199 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTV----------------------HGRTRAQGYLGPAD----WDYIKELKEAVPSI 199 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEE----------------------ecccHHhcCCCccC----HHHHHHHHHhCCCC
Confidence 7753 568999999999999999 56777888998866 99999999999569
Q ss_pred cEEEecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhHHHH
Q psy16199 718 PILGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVVDDY 759 (842)
Q Consensus 718 pIi~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~i 759 (842)
|||+||+|.|++|+.++++ .|+|+||+||+.+. +|+++.++
T Consensus 200 pvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~-nP~l~~~i 241 (323)
T COG0042 200 PVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG-NPWLFRQI 241 (323)
T ss_pred eEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc-CCcHHHHH
Confidence 9999999999999999999 78999999999994 59999987
No 73
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=1.4e-23 Score=241.94 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=157.4
Q ss_pred HHhcCcEEEeceee--ccccceec--cc-cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCcc
Q psy16199 61 VKDLGVKIECERSL--STRDITIE--KL-RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLC 135 (842)
Q Consensus 61 l~~~gV~i~~~~~v--~~~~v~~~--~~-~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c 135 (842)
+++.+++++.++.. +.+.+.+. +. ..+.||+||||||++ |+.+|++ +. +...++++.+.+..
T Consensus 100 ~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~-p~~~p~~-~~-~~~~v~~~~~~~~~---------- 166 (458)
T PRK06912 100 MKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSE-PTELPFA-PF-DGKWIINSKHAMSL---------- 166 (458)
T ss_pred HhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCC-CCCCCCC-CC-CCCeEEcchHHhCc----------
Confidence 34568999887743 22333332 22 246799999999998 7777776 42 33456665433321
Q ss_pred CCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceE
Q psy16199 136 GGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 136 ~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~ 210 (842)
...+++++|||||++|+|+|..+.+.|.+ ||++++.+. .++..++++ +.+.+.||++++++.+++
T Consensus 167 --------~~~~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~~~~-ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 167 --------PSIPSSLLIVGGGVIGCEFASIYSRLGTK-VTIVEMAPQ-LLPGEDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred --------cccCCcEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCC-cCccccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 23456799999999999999999999875 999998874 455444433 345577999999999999
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCC
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSV 288 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~ 288 (842)
+..++.. +.+.. +++..++++|.|++|+|.+ |+..+ ++.. |++++++| +.|| ++++|+.
T Consensus 237 i~~~~~~---v~~~~------------~g~~~~i~~D~vivA~G~~-p~~~~l~l~~~-gv~~~~~g-i~Vd-~~~~ts~ 297 (458)
T PRK06912 237 LNSYKKQ---ALFEY------------EGSIQEVNAEFVLVSVGRK-PRVQQLNLEKA-GVQFSNKG-ISVN-EHMQTNV 297 (458)
T ss_pred EEEcCCE---EEEEE------------CCceEEEEeCEEEEecCCc-cCCCCCCchhc-CceecCCC-EEeC-CCeecCC
Confidence 8633222 22322 2333579999999999999 55543 2444 78887766 9999 6899999
Q ss_pred CCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 289 PGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 289 ~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|+|||+|||+.++.++..|..||+.||.+|.
T Consensus 298 ~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 298 PHIYACGDVIGGIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred CCEEEEeecCCCcccHHHHHHHHHHHHHHHc
Confidence 9999999999888899999999999999974
No 74
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.91 E-value=6.8e-24 Score=244.43 Aligned_cols=216 Identities=17% Similarity=0.232 Sum_probs=159.0
Q ss_pred HHh-cCcEEEeceee--ccccceecc--------ccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhc
Q psy16199 61 VKD-LGVKIECERSL--STRDITIEK--------LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATS 129 (842)
Q Consensus 61 l~~-~gV~i~~~~~v--~~~~v~~~~--------~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~ 129 (842)
+++ .||+++.+... +.+.+.+.. ...+.||+||||||++ |+.+++| |.+ .++++.+.+..
T Consensus 113 l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~-p~~p~i~-G~~---~~~~~~~~~~~---- 183 (486)
T TIGR01423 113 FADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSW-PQMLGIP-GIE---HCISSNEAFYL---- 183 (486)
T ss_pred hhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCC-CCCCCCC-Chh---heechhhhhcc----
Confidence 445 38999988743 224454431 2346799999999998 7888888 542 24444433321
Q ss_pred ccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHc---CCcEEEEEEeecCccccCCHHHH-----HHHHhcCcE
Q psy16199 130 SKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC---GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCE 201 (842)
Q Consensus 130 ~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~---G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~ 201 (842)
...+++|+|||||++|+|+|..+.+. |. +|||+++.+. .++..+.++ +.+.+.||+
T Consensus 184 --------------~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~-~Vtli~~~~~-il~~~d~~~~~~l~~~L~~~GI~ 247 (486)
T TIGR01423 184 --------------DEPPRRVLTVGGGFISVEFAGIFNAYKPRGG-KVTLCYRNNM-ILRGFDSTLRKELTKQLRANGIN 247 (486)
T ss_pred --------------ccCCCeEEEECCCHHHHHHHHHHHHhccCCC-eEEEEecCCc-cccccCHHHHHHHHHHHHHcCCE
Confidence 22346699999999999999877655 76 5999998874 455555433 346678999
Q ss_pred EecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeee
Q psy16199 202 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEV 279 (842)
Q Consensus 202 i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~v 279 (842)
+++++.++++...++....+++.+ + .++++|.|++++|++ |+..+ ++.+ |++++++|+|.|
T Consensus 248 i~~~~~v~~i~~~~~~~~~v~~~~-------------g--~~i~~D~vl~a~G~~-Pn~~~l~l~~~-gl~~~~~G~I~V 310 (486)
T TIGR01423 248 IMTNENPAKVTLNADGSKHVTFES-------------G--KTLDVDVVMMAIGRV-PRTQTLQLDKV-GVELTKKGAIQV 310 (486)
T ss_pred EEcCCEEEEEEEcCCceEEEEEcC-------------C--CEEEcCEEEEeeCCC-cCcccCCchhh-CceECCCCCEec
Confidence 999999999974333333344432 2 269999999999999 55554 3444 789999999999
Q ss_pred CCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 280 NYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 280 d~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
| ++++|++|+|||+|||++.+..++.|..||+.||.+|.
T Consensus 311 d-~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 311 D-EFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred C-CCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHh
Confidence 9 68899999999999999888899999999999999985
No 75
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=1e-23 Score=243.27 Aligned_cols=260 Identities=18% Similarity=0.175 Sum_probs=174.4
Q ss_pred ceeeecceeEeec-CCCCcc--ccccCCCCCCCH---------------------------HHHH-----------HHHH
Q psy16199 21 KVCLSKDLPDIER-PVAALP--DSSEIPQYRLPF---------------------------DAVN-----------FEVE 59 (842)
Q Consensus 21 ~~~~g~~V~l~Ek-~~~GG~--~~~~iP~~~~~~---------------------------~~v~-----------~~~~ 59 (842)
....|++|+|+|+ ..+||. ...++|...+.. ++.+ ....
T Consensus 22 aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (466)
T PRK06115 22 AGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQMMKQKDESVEALTKGVEF 101 (466)
T ss_pred HHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3346999999997 589996 344566432110 0000 1112
Q ss_pred HHHhcCcEEEeceee--cccccee--ccc--cccCCCEEEEccCCCCCCCCCCCCCCc-cccCceehhcchHHHhhcccC
Q psy16199 60 LVKDLGVKIECERSL--STRDITI--EKL--RKDGYTAIFIGIGKPNANVIPIFQGLT-EEMGFYTSKTFLPRVATSSKK 132 (842)
Q Consensus 60 ~l~~~gV~i~~~~~v--~~~~v~~--~~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~-~~~gv~~~~~~l~~~~~~~~~ 132 (842)
.+++.+|+++.++.. +.+.+.+ +++ ..+.||+||||||++ |+ ++| |+. +...++++.+.+..
T Consensus 102 ~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~-p~--~ip-g~~~~~~~~~~~~~~~~~------- 170 (466)
T PRK06115 102 LFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSE-PT--PLP-GVTIDNQRIIDSTGALSL------- 170 (466)
T ss_pred HHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCC-CC--CCC-CCCCCCCeEECHHHHhCC-------
Confidence 234457888776521 1122222 232 246799999999998 54 344 432 11234444333210
Q ss_pred CccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCC
Q psy16199 133 GLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMS 207 (842)
Q Consensus 133 ~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~ 207 (842)
...+++|+|||||++|+|+|..+.+.|.+ ||++++.++ .++..+.++ +.+.+.||++++++.
T Consensus 171 -----------~~~~~~vvIIGgG~ig~E~A~~l~~~G~~-Vtlie~~~~-il~~~d~~~~~~l~~~l~~~gV~i~~~~~ 237 (466)
T PRK06115 171 -----------PEVPKHLVVIGAGVIGLELGSVWRRLGAQ-VTVVEYLDR-ICPGTDTETAKTLQKALTKQGMKFKLGSK 237 (466)
T ss_pred -----------ccCCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEeCCCC-CCCCCCHHHHHHHHHHHHhcCCEEEECcE
Confidence 23456799999999999999999999975 999998874 455444332 345678999999999
Q ss_pred ceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCC
Q psy16199 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMA 285 (842)
Q Consensus 208 v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~ 285 (842)
++++...++.+ .+.+... .+|+..++++|.|++++|++ |+.+. ++.. |++++++| +.+| +.++
T Consensus 238 V~~i~~~~~~v-~v~~~~~----------~~g~~~~i~~D~vi~a~G~~-pn~~~l~~~~~-g~~~~~~G-~~vd-~~~~ 302 (466)
T PRK06115 238 VTGATAGADGV-SLTLEPA----------AGGAAETLQADYVLVAIGRR-PYTQGLGLETV-GLETDKRG-MLAN-DHHR 302 (466)
T ss_pred EEEEEEcCCeE-EEEEEEc----------CCCceeEEEeCEEEEccCCc-cccccCCcccc-cceeCCCC-EEEC-CCee
Confidence 99997433333 2434321 02334579999999999999 56553 3344 67787777 6678 6899
Q ss_pred CCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 286 TSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 286 Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|++|+|||+|||+..+.+++.|..||+.||.+|.
T Consensus 303 Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~ 336 (466)
T PRK06115 303 TSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIA 336 (466)
T ss_pred cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHc
Confidence 9999999999999888899999999999999985
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-24 Score=224.59 Aligned_cols=263 Identities=16% Similarity=0.215 Sum_probs=203.9
Q ss_pred eecceeEeecCCCCccc--cccCCCC-----CCCHHHHHHHHHHHHhcCcEEEeceeecc----------ccceeccccc
Q psy16199 24 LSKDLPDIERPVAALPD--SSEIPQY-----RLPFDAVNFEVELVKDLGVKIECERSLST----------RDITIEKLRK 86 (842)
Q Consensus 24 ~g~~V~l~Ek~~~GG~~--~~~iP~~-----~~~~~~v~~~~~~l~~~gV~i~~~~~v~~----------~~v~~~~~~~ 86 (842)
.|.+.=|. .++.||++ ..+|.+| .....+.....+.++++.|++...+.... ..++++++-.
T Consensus 233 KGiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGav 311 (520)
T COG3634 233 KGIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAV 311 (520)
T ss_pred hcchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCce
Confidence 46555554 45778875 2344333 22335667777788888888765543321 3466777767
Q ss_pred cCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHH
Q psy16199 87 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATS 165 (842)
Q Consensus 87 ~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~ 165 (842)
+..+.+|||||++ .|.+.+| |-.++ . .....||+.||+ +.+.+| |+|||||++|+|.|.+
T Consensus 312 LkaktvIlstGAr-WRn~nvP-GE~e~---------r-----nKGVayCPHCDG---PLF~gK~VAVIGGGNSGvEAAID 372 (520)
T COG3634 312 LKARTVILATGAR-WRNMNVP-GEDEY---------R-----NKGVAYCPHCDG---PLFKGKRVAVIGGGNSGVEAAID 372 (520)
T ss_pred eccceEEEecCcc-hhcCCCC-chHHH---------h-----hCCeeeCCCCCC---cccCCceEEEECCCcchHHHHHh
Confidence 7799999999999 7888898 52221 1 123358999999 888888 9999999999999999
Q ss_pred HHHcCCcEEEEEEeecCccccCCHHHHHHHHh-cCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEE
Q psy16199 166 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 244 (842)
Q Consensus 166 l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~-~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i 244 (842)
|+-. +++||+++-.+ .+.+..-..+++.. .+++++++...++|.++..+|+++...+. .+|++..+
T Consensus 373 LAGi-v~hVtllEF~~--eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr----------~sge~~~l 439 (520)
T COG3634 373 LAGI-VEHVTLLEFAP--ELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDR----------VSGEEHHL 439 (520)
T ss_pred HHhh-hheeeeeecch--hhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEec----------cCCceeEE
Confidence 9877 56799998765 44444444445554 48999999999999965578999988775 25777889
Q ss_pred ECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc-hhHHHHHHHHHHHHHHHHHHHH
Q psy16199 245 KANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 245 ~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~-~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
+-+-|++-+|.. ||++|++.. ++++++|-|.|| ....||+|||||+|||+..+ +++..|+.+|..|+.+...||-
T Consensus 440 ~LeGvFVqIGL~-PNT~WLkg~--vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLI 515 (520)
T COG3634 440 ELEGVFVQIGLL-PNTEWLKGA--VELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI 515 (520)
T ss_pred EeeeeEEEEecc-cChhHhhch--hhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhhe
Confidence 999999999999 899999986 999999999999 78999999999999998754 7889999999999999988873
No 77
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.91 E-value=1.3e-23 Score=237.85 Aligned_cols=291 Identities=16% Similarity=0.179 Sum_probs=189.8
Q ss_pred cccccCceeeecceeEeecCCCCccccccCCC-C---CCCHHHHHHHHHHHHhcCcEEEeceeecc-----ccceecccc
Q psy16199 15 IEMSTAKVCLSKDLPDIERPVAALPDSSEIPQ-Y---RLPFDAVNFEVELVKDLGVKIECERSLST-----RDITIEKLR 85 (842)
Q Consensus 15 ~~~~~~~~~~g~~V~l~Ek~~~GG~~~~~iP~-~---~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~ 85 (842)
+|.+.++.....+|+|++++..-...+..++. + ...........+++.+.+|++++++.|.. +.+.++++.
T Consensus 18 aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~ 97 (396)
T PRK09754 18 AAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGE 97 (396)
T ss_pred HHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCC
Confidence 44455554445589999986211111111110 0 00000011123456678999999975521 335555555
Q ss_pred ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHH--HhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHH
Q psy16199 86 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPR--VATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA 163 (842)
Q Consensus 86 ~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~--~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A 163 (842)
.+.||+||||||+. ++.+|+++ ...+++++..+.-+. +... ....++|+|||+|++|+|+|
T Consensus 98 ~~~yd~LViATGs~-~~~~p~~~--~~~~~v~~~~~~~da~~l~~~--------------~~~~~~vvViGgG~ig~E~A 160 (396)
T PRK09754 98 SWHWDQLFIATGAA-ARPLPLLD--ALGERCFTLRHAGDAARLREV--------------LQPERSVVIVGAGTIGLELA 160 (396)
T ss_pred EEEcCEEEEccCCC-CCCCCCCC--cCCCCEEecCCHHHHHHHHHH--------------hhcCCeEEEECCCHHHHHHH
Confidence 67899999999999 77777763 234567664222111 1110 11234599999999999999
Q ss_pred HHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccC
Q psy16199 164 TSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE 238 (842)
Q Consensus 164 ~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~ 238 (842)
..|.+.|.+ ||++++.+.......+++ .+.+.+.||++++++.++++.. ++.+ .+++.+
T Consensus 161 ~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~-~v~l~~------------- 224 (396)
T PRK09754 161 ASATQRRCK-VTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKV-ELTLQS------------- 224 (396)
T ss_pred HHHHHcCCe-EEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEE-EEEECC-------------
Confidence 999999875 999998874222222322 2335678999999999999863 3332 244332
Q ss_pred CceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC---------chhHHHHHH
Q psy16199 239 EQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL---------SDTTVESVN 309 (842)
Q Consensus 239 g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~---------~~~~~~A~~ 309 (842)
| .++++|.||+++|.+ |+..|++.+ |++.+ +.|.|| ++++|+.|+|||+|||+.. ..++..|..
T Consensus 225 g--~~i~aD~Vv~a~G~~-pn~~l~~~~-gl~~~--~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~ 297 (396)
T PRK09754 225 G--ETLQADVVIYGIGIS-ANDQLAREA-NLDTA--NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANN 297 (396)
T ss_pred C--CEEECCEEEECCCCC-hhhHHHHhc-CCCcC--CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHH
Confidence 2 268999999999999 677787766 77664 569999 6899999999999999742 135688999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCceeeccccccceeeeccc
Q psy16199 310 DGKTAAWHIHKYIQEKNNLTVPDKPCLPKFMSHIDLVDISVEICGL 355 (842)
Q Consensus 310 ~G~~aA~~I~~~L~~~~~~~~~~~~~~p~~~t~i~~~~L~~~~~G~ 355 (842)
||+.||.||... ..+ .+..|+||+ +++++.++..|.
T Consensus 298 qg~~aa~ni~g~-----~~~---~~~~p~~~~--~~~~~~~~~~G~ 333 (396)
T PRK09754 298 QAQIAAAAMLGL-----PLP---LLPPPWFWS--DQYSDNLQFIGD 333 (396)
T ss_pred HHHHHHHHhcCC-----CCC---CCCCCceEE--EeCCccEEEeeC
Confidence 999999999521 112 235688887 566777777774
No 78
>PRK13748 putative mercuric reductase; Provisional
Probab=99.91 E-value=1.2e-23 Score=248.91 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=155.9
Q ss_pred HHhc-CcEEEeceeec--ccccee--ccc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCC
Q psy16199 61 VKDL-GVKIECERSLS--TRDITI--EKL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKG 133 (842)
Q Consensus 61 l~~~-gV~i~~~~~v~--~~~v~~--~~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~ 133 (842)
+++. +|+++.++... .+.+.+ .++ ..+.||+||||||++ |+.+++| |+.+ ..++++.+.+..
T Consensus 198 ~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~-p~~p~i~-g~~~-~~~~~~~~~~~~-------- 266 (561)
T PRK13748 198 LDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGAS-PAVPPIP-GLKE-TPYWTSTEALVS-------- 266 (561)
T ss_pred HhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCC-CCCCCCC-CCCc-cceEccHHHhhc--------
Confidence 3444 78988775432 122333 233 246799999999998 7888888 6433 234443332211
Q ss_pred ccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCc
Q psy16199 134 LCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSP 208 (842)
Q Consensus 134 ~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v 208 (842)
...+++|+|||||++|+|+|..|.+.|. +||++++.. .++..++++ +.+.+.||++++++.+
T Consensus 267 ----------~~~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~--~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 267 ----------DTIPERLAVIGSSVVALELAQAFARLGS-KVTILARST--LFFREDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred ----------ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCc--cccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 2234669999999999999999999986 499999853 344444332 3456789999999999
Q ss_pred eEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCC
Q psy16199 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMAT 286 (842)
Q Consensus 209 ~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~T 286 (842)
+++...++.+. +... ++ ++++|.|++++|++ |+..+ ++.+ |++++++|+|.|| ++++|
T Consensus 334 ~~i~~~~~~~~-v~~~-------------~~---~i~~D~vi~a~G~~-pn~~~l~l~~~-g~~~~~~g~i~vd-~~~~T 393 (561)
T PRK13748 334 SQVAHVDGEFV-LTTG-------------HG---ELRADKLLVATGRA-PNTRSLALDAA-GVTVNAQGAIVID-QGMRT 393 (561)
T ss_pred EEEEecCCEEE-EEec-------------CC---eEEeCEEEEccCCC-cCCCCcCchhc-CceECCCCCEeEC-CCccc
Confidence 99864333221 2211 11 58999999999999 56554 3455 8999999999999 68999
Q ss_pred CCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 287 SVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 287 s~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
++|+|||+|||+..+..++.|..+|+.||.+|.
T Consensus 394 s~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 394 SVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCCEEEeeecCCCccchhHHHHHHHHHHHHHc
Confidence 999999999999888889999999999999985
No 79
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.91 E-value=1.3e-23 Score=255.32 Aligned_cols=256 Identities=16% Similarity=0.197 Sum_probs=184.1
Q ss_pred eecceeEeecC-CCCccccccCCCC----CCCHHHHHHHHHHHHhcCcEEEeceeecc-----ccceeccccccCCCEEE
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIPQY----RLPFDAVNFEVELVKDLGVKIECERSLST-----RDITIEKLRKDGYTAIF 93 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP~~----~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~~~~yd~lV 93 (842)
.+++|||||++ +++ ..+..++.+ ....++.....+++++.||++++++.|.. +.|...++..+.||+||
T Consensus 23 ~~~~Itvi~~e~~~~-y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LV 101 (785)
T TIGR02374 23 HMFEITIFGEEPHPN-YNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLI 101 (785)
T ss_pred CCCeEEEEeCCCCCC-cccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEE
Confidence 57899999997 443 222223221 22234444455678889999999976532 33555555567899999
Q ss_pred EccCCCCCCCCCCCCCCccccCceehhcc--hHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCC
Q psy16199 94 IGIGKPNANVIPIFQGLTEEMGFYTSKTF--LPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGA 171 (842)
Q Consensus 94 lAtGs~~~~~~~i~~G~~~~~gv~~~~~~--l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~ 171 (842)
||||+. |+.+++| |. +.+++++..+. +..+... ....++|+|||||++|+|+|..|.+.|.
T Consensus 102 lATGs~-p~~p~ip-G~-~~~~v~~~rt~~d~~~i~~~--------------~~~~k~vvVVGgG~~GlE~A~~L~~~G~ 164 (785)
T TIGR02374 102 LATGSY-PFILPIP-GA-DKKGVYVFRTIEDLDAIMAM--------------AQRFKKAAVIGGGLLGLEAAVGLQNLGM 164 (785)
T ss_pred ECCCCC-cCCCCCC-CC-CCCCEEEeCCHHHHHHHHHH--------------hhcCCeEEEECCCHHHHHHHHHHHhcCC
Confidence 999998 8888898 63 55677654321 2222111 1223459999999999999999999997
Q ss_pred cEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEEC
Q psy16199 172 NKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA 246 (842)
Q Consensus 172 ~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~ 246 (842)
+ |+++++.+.......++. .+.+.+.||++++++.++++. +++++..|++.+ | .++++
T Consensus 165 ~-Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~-~~~~~~~v~~~d-------------G--~~i~~ 227 (785)
T TIGR02374 165 D-VSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIV-GATKADRIRFKD-------------G--SSLEA 227 (785)
T ss_pred e-EEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEE-cCCceEEEEECC-------------C--CEEEc
Confidence 5 999998874222223332 234567899999999999987 455666676653 2 27999
Q ss_pred CEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc----hhHHHHHHHHHHHHHHHH
Q psy16199 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS----DTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 247 D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~----~~~~~A~~~G~~aA~~I~ 319 (842)
|+||+++|.+ |+..|++.+ |++++ |.|.|| ++++|+.|+|||+|||+..+ ..+..|..||+.+|.+|.
T Consensus 228 D~Vi~a~G~~-Pn~~la~~~-gl~~~--ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 228 DLIVMAAGIR-PNDELAVSA-GIKVN--RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC 299 (785)
T ss_pred CEEEECCCCC-cCcHHHHhc-CCccC--CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence 9999999999 677788776 78776 669999 68999999999999998643 356778999999999985
No 80
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.91 E-value=1.9e-23 Score=228.52 Aligned_cols=171 Identities=25% Similarity=0.373 Sum_probs=148.2
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++||. |+++++|.++|++++++|+|+||||++|| +.....+.|+.+.++++.+.++++++++.+++||+||++..
T Consensus 63 ~p~i~ql~-g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 63 TPISVQLF-GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred ceEEEEEe-CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 79999996 78999999999999999999999999999 44455667888899999999999999999999999999754
Q ss_pred hh----cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCc
Q psy16199 643 IT----NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFP 718 (842)
Q Consensus 643 ~~----~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ip 718 (842)
++ +..++++.++++|+|+|+++++ +..++++|++. +++++++++.+ ++|
T Consensus 142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r----------------------~~~~~~~~~~~----~~~i~~i~~~~-~ip 194 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAGAQAVTLHGR----------------------TRAQGYSGEAN----WDIIARVKQAV-RIP 194 (319)
T ss_pred cCCCcchHHHHHHHHHHhCCCEEEEEcc----------------------cccccCCCchh----HHHHHHHHHcC-CCc
Confidence 32 4679999999999999999653 22356676554 89999999998 699
Q ss_pred EEEecCcCCHHHHHHHH-HhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 719 ILGIGGIDSADVALQFI-QAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l-~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||++|||.|++|+.+++ ..|||+||+||+++. +|+++.++.+.+
T Consensus 195 vi~nGgI~~~~da~~~l~~~gad~VmigR~~l~-~P~l~~~~~~~~ 239 (319)
T TIGR00737 195 VIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG-NPWLFRQIEQYL 239 (319)
T ss_pred EEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh-CChHHHHHHHHH
Confidence 99999999999999999 489999999999995 599998876544
No 81
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.91 E-value=2.1e-23 Score=238.92 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=180.6
Q ss_pred cccccCceeeecceeEeecCCCCccccccCCCCCC-----CHHHHHHHHHH-HHhcCcEEEeceeecc-----ccceecc
Q psy16199 15 IEMSTAKVCLSKDLPDIERPVAALPDSSEIPQYRL-----PFDAVNFEVEL-VKDLGVKIECERSLST-----RDITIEK 83 (842)
Q Consensus 15 ~~~~~~~~~~g~~V~l~Ek~~~GG~~~~~iP~~~~-----~~~~v~~~~~~-l~~~gV~i~~~~~v~~-----~~v~~~~ 83 (842)
+|.+.++...+++|+|+|++..-+..++++|.+.. ..+.+....+. .++.|++++++++|.. +.|.+.+
T Consensus 16 aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~ 95 (438)
T PRK13512 16 CASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLN 95 (438)
T ss_pred HHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEE
Confidence 45566666678999999997333355566665421 11223222233 3567999998766532 3344433
Q ss_pred c-----cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchH--HHhhcccCCccCCCCCCCCCCCCCcEEEEcCC
Q psy16199 84 L-----RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLP--RVATSSKKGLCGGCKKESLPILKGTVIVLGAG 156 (842)
Q Consensus 84 ~-----~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~--~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG 156 (842)
. ....||+||||||++ |+.++++ .+++++..+... .+..... ...+++|+|||||
T Consensus 96 ~~~~~~~~~~yd~lviAtGs~-~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~------------~~~~~~vvViGgG 157 (438)
T PRK13512 96 RKTNEQFEESYDKLILSPGAS-ANSLGFE-----SDITFTLRNLEDTDAIDQFIK------------ANQVDKALVVGAG 157 (438)
T ss_pred CCCCcEEeeecCEEEECCCCC-CCCCCCC-----CCCeEEecCHHHHHHHHHHHh------------hcCCCEEEEECCC
Confidence 2 134799999999999 6655543 234554432221 1111100 1234569999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCC
Q psy16199 157 DTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK 231 (842)
Q Consensus 157 ~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~ 231 (842)
++|+|+|..|.+.|.+ ||++++.+. .++..+++ .+.+.+.||++++++.++++.. . .+++.+
T Consensus 158 ~ig~E~A~~l~~~g~~-Vtli~~~~~-l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~---~v~~~~------ 224 (438)
T PRK13512 158 YISLEVLENLYERGLH-PTLIHRSDK-INKLMDADMNQPILDELDKREIPYRLNEEIDAING--N---EVTFKS------ 224 (438)
T ss_pred HHHHHHHHHHHhCCCc-EEEEecccc-cchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C---EEEECC------
Confidence 9999999999999975 999999874 34444333 2345678999999999999852 2 244432
Q ss_pred CCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC----------c
Q psy16199 232 GEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL----------S 301 (842)
Q Consensus 232 G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~----------~ 301 (842)
|+ ++++|.|++++|++ |+.++++.. |++++++|++.|| ++++|+.|+|||+|||+.. .
T Consensus 225 -------g~--~~~~D~vl~a~G~~-pn~~~l~~~-gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~ 292 (438)
T PRK13512 225 -------GK--VEHYDMIIEGVGTH-PNSKFIESS-NIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASV 292 (438)
T ss_pred -------CC--EEEeCEEEECcCCC-cChHHHHhc-CcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceec
Confidence 22 58999999999999 777888776 8999888999999 6799999999999999752 2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16199 302 DTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 302 ~~~~~A~~~G~~aA~~I~ 319 (842)
...+.|..+|+.+|.+|.
T Consensus 293 ~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 293 PLAWGAHRAASIVAEQIA 310 (438)
T ss_pred ccchHHHHHHHHHHHHhc
Confidence 456778999999999984
No 82
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=6.2e-23 Score=237.49 Aligned_cols=257 Identities=16% Similarity=0.161 Sum_probs=174.5
Q ss_pred eeecceeEeecCCCCccc--cccCCCCC-------------------------CC-HHH-------HH----HHHHHHHh
Q psy16199 23 CLSKDLPDIERPVAALPD--SSEIPQYR-------------------------LP-FDA-------VN----FEVELVKD 63 (842)
Q Consensus 23 ~~g~~V~l~Ek~~~GG~~--~~~iP~~~-------------------------~~-~~~-------v~----~~~~~l~~ 63 (842)
..|++|+|+|++.+||.. .-++|... .. .++ ++ ...+.+++
T Consensus 25 ~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 104 (472)
T PRK05976 25 QLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKK 104 (472)
T ss_pred hCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 369999999999899964 23344311 01 011 11 11234566
Q ss_pred cCcEEEeceee--ccc-------ccee--ccc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcc
Q psy16199 64 LGVKIECERSL--STR-------DITI--EKL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSS 130 (842)
Q Consensus 64 ~gV~i~~~~~v--~~~-------~v~~--~~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~ 130 (842)
.||+++.++.. +.+ .+.+ +++ ..+.||+||||||++ |+.+|.+ .. +...++++.+.+..
T Consensus 105 ~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~-p~~~p~~-~~-~~~~~~~~~~~~~~----- 176 (472)
T PRK05976 105 GKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR-PVELPGL-PF-DGEYVISSDEALSL----- 176 (472)
T ss_pred CCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCC-CCCCCCC-CC-CCceEEcchHhhCc-----
Confidence 79999998643 212 2333 233 346799999999998 6544322 11 22235554433321
Q ss_pred cCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecC
Q psy16199 131 KKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPF 205 (842)
Q Consensus 131 ~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~ 205 (842)
...+++|+|||||++|+|+|..|.+.|.+ ||++++.+. .++..+.++ +.+.+.||+++++
T Consensus 177 -------------~~~~~~vvIIGgG~~G~E~A~~l~~~g~~-Vtli~~~~~-il~~~~~~~~~~l~~~l~~~gI~i~~~ 241 (472)
T PRK05976 177 -------------ETLPKSLVIVGGGVIGLEWASMLADFGVE-VTVVEAADR-ILPTEDAELSKEVARLLKKLGVRVVTG 241 (472)
T ss_pred -------------cccCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEEecCc-cCCcCCHHHHHHHHHHHHhcCCEEEeC
Confidence 22356799999999999999999999875 999999874 455444332 3456789999999
Q ss_pred CCceEEEc-cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCC
Q psy16199 206 MSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYT 282 (842)
Q Consensus 206 ~~v~~v~~-~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~ 282 (842)
+.++++.. .++++..+... +|+..++++|.||+++|.+ |+... .+.+ ++.. ++|++.|| +
T Consensus 242 ~~v~~i~~~~~~~~~~~~~~-------------~g~~~~i~~D~vi~a~G~~-p~~~~l~l~~~-~~~~-~~g~i~Vd-~ 304 (472)
T PRK05976 242 AKVLGLTLKKDGGVLIVAEH-------------NGEEKTLEADKVLVSVGRR-PNTEGIGLENT-DIDV-EGGFIQID-D 304 (472)
T ss_pred cEEEEEEEecCCCEEEEEEe-------------CCceEEEEeCEEEEeeCCc-cCCCCCCchhc-Ccee-cCCEEEEC-C
Confidence 99999863 13444322222 2344579999999999999 45443 2333 4544 46899999 6
Q ss_pred CCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 283 TMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 283 ~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+++|+.|+|||+|||+..+.++..|..+|+.||.+|.
T Consensus 305 ~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHc
Confidence 8999999999999999878889999999999999984
No 83
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=3.5e-23 Score=239.19 Aligned_cols=217 Identities=21% Similarity=0.258 Sum_probs=154.8
Q ss_pred HhcCcEEEecee--eccccceeccccccCCCEEEEccCCCCCCCCCCCCCCcc--ccCceehhcchHHHhhcccCCccCC
Q psy16199 62 KDLGVKIECERS--LSTRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTE--EMGFYTSKTFLPRVATSSKKGLCGG 137 (842)
Q Consensus 62 ~~~gV~i~~~~~--v~~~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~--~~gv~~~~~~l~~~~~~~~~~~c~~ 137 (842)
+..+|+++.++. ++...+.+ +...+.||+||||||+. .+++| |... ...+++..+.+..
T Consensus 103 ~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~---~p~ip-g~~~~~~~~~~~~~~~~~~------------ 165 (460)
T PRK06292 103 KKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSR---VPPIP-GVWLILGDRLLTSDDAFEL------------ 165 (460)
T ss_pred hhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCC---CCCCC-CCcccCCCcEECchHHhCc------------
Confidence 445788876643 22233444 23456799999999998 34555 4321 2344544333211
Q ss_pred CCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEE
Q psy16199 138 CKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVD 212 (842)
Q Consensus 138 c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~ 212 (842)
...+++|+|||+|++|+|+|..|.+.|.+ |+++++.+. .++..+.++ +.+.+. |++++++.++++.
T Consensus 166 ------~~~~k~v~VIGgG~~g~E~A~~l~~~g~~-Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~ 236 (460)
T PRK06292 166 ------DKLPKSLAVIGGGVIGLELGQALSRLGVK-VTVFERGDR-ILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236 (460)
T ss_pred ------cccCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCC-cCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEE
Confidence 23456799999999999999999999975 999999874 455444433 234556 9999999999997
Q ss_pred ccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCCCC
Q psy16199 213 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSVPG 290 (842)
Q Consensus 213 ~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~~g 290 (842)
..++ ..+++... +++..++++|.|++++|.+ |+.++ ++.+ |++++++|+|.|| ++++|+.|+
T Consensus 237 ~~~~--~~v~~~~~-----------~~~~~~i~~D~vi~a~G~~-p~~~~l~l~~~-g~~~~~~g~i~vd-~~~~ts~~~ 300 (460)
T PRK06292 237 KSGD--EKVEELEK-----------GGKTETIEADYVLVATGRR-PNTDGLGLENT-GIELDERGRPVVD-EHTQTSVPG 300 (460)
T ss_pred EcCC--ceEEEEEc-----------CCceEEEEeCEEEEccCCc-cCCCCCCcHhh-CCEecCCCcEeEC-CCcccCCCC
Confidence 4322 22332210 2344579999999999999 55553 4555 7889989999999 689999999
Q ss_pred eEEeccCCCCchhHHHHHHHHHHHHHHHHH
Q psy16199 291 VFCGGDTANLSDTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 291 Vfa~GD~~~~~~~~~~A~~~G~~aA~~I~~ 320 (842)
|||+|||+..+.++..|..||+.||.+|..
T Consensus 301 IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 301 IYAAGDVNGKPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred EEEEEecCCCccchhHHHHHHHHHHHHhcC
Confidence 999999998778899999999999999964
No 84
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.91 E-value=8.3e-24 Score=231.47 Aligned_cols=176 Identities=22% Similarity=0.292 Sum_probs=149.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++||. |.+++++.++|++++++|+|+||||++||+. ...+++|+++.++++++.++++++++.+++||.||++..
T Consensus 65 ~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g 143 (333)
T PRK11815 65 HPVALQLG-GSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG 143 (333)
T ss_pred CcEEEEEe-CCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence 79999995 7899999999999999999999999999933 456779999999999999999999999999999999654
Q ss_pred hh------cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC---CccccchHHHHHHHHhh
Q psy16199 643 IT------NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG---NATRPMGLKAVSSIAKM 713 (842)
Q Consensus 643 ~~------~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG---~~~~p~al~~v~~i~~~ 713 (842)
++ +..++++.++++|+|+|+++.++.. ..|++| ..+.|..+++++++++.
T Consensus 144 ~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~---------------------~~g~~~~~~~~~~~~~~~~i~~v~~~ 202 (333)
T PRK11815 144 IDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAW---------------------LKGLSPKENREIPPLDYDRVYRLKRD 202 (333)
T ss_pred eCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchh---------------------hcCCCccccccCCCcCHHHHHHHHHh
Confidence 32 4678899999999999999754321 123333 34567779999999998
Q ss_pred CCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 714 FPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 714 ~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
++++|||++|||.|++|+.+++. |||+|||||+++ .+|++++++.+.+
T Consensus 203 ~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l-~nP~~~~~~~~~~ 250 (333)
T PRK11815 203 FPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAY-HNPYLLAEVDREL 250 (333)
T ss_pred CCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHH-hCCHHHHHHHHHh
Confidence 76799999999999999999987 799999999999 4699999886443
No 85
>PRK14694 putative mercuric reductase; Provisional
Probab=99.91 E-value=4.1e-23 Score=238.59 Aligned_cols=210 Identities=23% Similarity=0.327 Sum_probs=152.2
Q ss_pred CcEEEeceeecc----ccceeccc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCC
Q psy16199 65 GVKIECERSLST----RDITIEKL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGC 138 (842)
Q Consensus 65 gV~i~~~~~v~~----~~v~~~~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c 138 (842)
+|+++.++.... ..+++.++ ..+.||+||||||++ |+.+++| |+.+. .++++.+.+.
T Consensus 111 ~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~-p~~p~i~-G~~~~-~~~~~~~~~~-------------- 173 (468)
T PRK14694 111 AITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGAR-PAEPPVP-GLAET-PYLTSTSALE-------------- 173 (468)
T ss_pred CeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCC-CCCCCCC-CCCCC-ceEcchhhhc--------------
Confidence 788888764321 22433433 246799999999998 8888888 65432 3444332221
Q ss_pred CCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEc
Q psy16199 139 KKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV 213 (842)
Q Consensus 139 ~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~ 213 (842)
....+++++|||+|++|+|+|..|.+.|. +||++.+.. .++..++++ +.+.+.||++++++.++++..
T Consensus 174 ----l~~~~~~vvViG~G~~G~E~A~~l~~~g~-~Vtlv~~~~--~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~ 246 (468)
T PRK14694 174 ----LDHIPERLLVIGASVVALELAQAFARLGS-RVTVLARSR--VLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDY 246 (468)
T ss_pred ----hhcCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEECCC--CCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 12234679999999999999999999986 499998742 444443332 335678999999999999874
Q ss_pred cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHH--hhcCCcccCCCCCeeeCCCCCCCCCCCe
Q psy16199 214 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL--EAIKPVKLDKYGYPEVNYTTMATSVPGV 291 (842)
Q Consensus 214 ~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~--~~l~gl~~~~~G~i~vd~~~~~Ts~~gV 291 (842)
+++.+ .+... +. ++++|.||+++|.+ |+..++ +.+ |++. ++|++.|| ++++|++|+|
T Consensus 247 ~~~~~-~v~~~--------------~~--~i~~D~vi~a~G~~-pn~~~l~l~~~-g~~~-~~G~i~vd-~~~~Ts~~~I 305 (468)
T PRK14694 247 NGREF-ILETN--------------AG--TLRAEQLLVATGRT-PNTENLNLESI-GVET-ERGAIRID-EHLQTTVSGI 305 (468)
T ss_pred cCCEE-EEEEC--------------CC--EEEeCEEEEccCCC-CCcCCCCchhc-Cccc-CCCeEeeC-CCcccCCCCE
Confidence 33222 12211 11 58999999999999 566553 344 6775 47899999 6899999999
Q ss_pred EEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 292 FCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 292 fa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
||+|||+..+..++.|..+|+.||.+|.
T Consensus 306 yA~GD~~~~~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 306 YAAGDCTDQPQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred EEEeecCCCcccHHHHHHHHHHHHHHhc
Confidence 9999999888889999999999999985
No 86
>PRK14727 putative mercuric reductase; Provisional
Probab=99.91 E-value=3.5e-23 Score=239.60 Aligned_cols=211 Identities=21% Similarity=0.266 Sum_probs=153.5
Q ss_pred CcEEEeceee--cccccee--ccc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCC
Q psy16199 65 GVKIECERSL--STRDITI--EKL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGC 138 (842)
Q Consensus 65 gV~i~~~~~v--~~~~v~~--~~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c 138 (842)
+|+++.++.. +.+.+.+ .++ ..+.||+||||||++ |+.+++| |+.+ ..++++.+.+..
T Consensus 121 ~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~-p~~p~i~-G~~~-~~~~~~~~~l~~------------- 184 (479)
T PRK14727 121 ALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGST-PTIPPIP-GLMD-TPYWTSTEALFS------------- 184 (479)
T ss_pred CeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCC-CCCCCCC-CcCc-cceecchHHhcc-------------
Confidence 7888876532 2122333 233 246799999999998 8888888 6432 223443332211
Q ss_pred CCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEc
Q psy16199 139 KKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV 213 (842)
Q Consensus 139 ~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~ 213 (842)
...+++|+|||+|++|+|+|..+.+.|.+ ||++++.. .++..++++ +.+.+.||++++++.++++..
T Consensus 185 -----~~~~k~vvVIGgG~iG~E~A~~l~~~G~~-Vtlv~~~~--~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~ 256 (479)
T PRK14727 185 -----DELPASLTVIGSSVVAAEIAQAYARLGSR-VTILARST--LLFREDPLLGETLTACFEKEGIEVLNNTQASLVEH 256 (479)
T ss_pred -----ccCCCeEEEECCCHHHHHHHHHHHHcCCE-EEEEEcCC--CCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEE
Confidence 22346699999999999999999999875 99998753 445454443 335678999999999998864
Q ss_pred cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCCCCCe
Q psy16199 214 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATSVPGV 291 (842)
Q Consensus 214 ~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts~~gV 291 (842)
.++.+. +... ++ ++++|.||+++|.. |+..+ ++.+ |++++++|+|.|| +.++|++|+|
T Consensus 257 ~~~~~~-v~~~-------------~g---~i~aD~VlvA~G~~-pn~~~l~l~~~-g~~~~~~G~i~Vd-~~~~Ts~~~I 316 (479)
T PRK14727 257 DDNGFV-LTTG-------------HG---ELRAEKLLISTGRH-ANTHDLNLEAV-GVTTDTSGAIVVN-PAMETSAPDI 316 (479)
T ss_pred eCCEEE-EEEc-------------CC---eEEeCEEEEccCCC-CCccCCCchhh-CceecCCCCEEEC-CCeecCCCCE
Confidence 333221 2211 11 58899999999999 56553 3444 7889999999999 5799999999
Q ss_pred EEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 292 FCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 292 fa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
||+|||+..+..++.|..||+.||.+|.
T Consensus 317 yA~GD~~~~~~~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 317 YAAGDCSDLPQFVYVAAAAGSRAGINMT 344 (479)
T ss_pred EEeeecCCcchhhhHHHHHHHHHHHHHc
Confidence 9999999888889999999999999985
No 87
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.91 E-value=5.7e-23 Score=225.79 Aligned_cols=273 Identities=18% Similarity=0.202 Sum_probs=189.0
Q ss_pred ecceeEeecC--CCCccccccCCCCCCCH-HHHHHHHHHHHhcC-cEEEeceeecc----ccceeccccccCCCEEEEcc
Q psy16199 25 SKDLPDIERP--VAALPDSSEIPQYRLPF-DAVNFEVELVKDLG-VKIECERSLST----RDITIEKLRKDGYTAIFIGI 96 (842)
Q Consensus 25 g~~V~l~Ek~--~~GG~~~~~iP~~~~~~-~~v~~~~~~l~~~g-V~i~~~~~v~~----~~v~~~~~~~~~yd~lVlAt 96 (842)
+.+|||+|+. ++=--+.+......++. ++.....+.+++.+ |+|..++..+. +.|++++...+.||+||||+
T Consensus 28 ~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVval 107 (405)
T COG1252 28 DVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVAL 107 (405)
T ss_pred CCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEec
Confidence 6789999996 22222334444444444 33334455566566 99999987653 55777775667899999999
Q ss_pred CCCCCCCCCCCCCCcccc-CceehhcchHHHhhcccCCccCCCCCCCCCCCCC--cEEEEcCChhHHHHHHHHHHcCC--
Q psy16199 97 GKPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG--TVIVLGAGDTAFDCATSALRCGA-- 171 (842)
Q Consensus 97 Gs~~~~~~~i~~G~~~~~-gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~--kVvVIGgG~~g~e~A~~l~~~G~-- 171 (842)
|+. +..+.+| |+.++. .+.+..+.++..+.... .....+ ....... .++|+|||++|+|+|.+|...-.
T Consensus 108 Gs~-~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~--~fe~a~--~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l 181 (405)
T COG1252 108 GSE-TNYFGIP-GAAEYAFGLKTLEDALRLRRHLLE--AFEKAS--QEEDDRALLTIVIVGGGPTGVELAGELAERLHRL 181 (405)
T ss_pred CCc-CCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHH--HHHHhh--ccccccceeEEEEECCChhHHHHHHHHHHHHHHH
Confidence 999 8888888 655543 33333333221111000 000000 0011112 39999999999999999876411
Q ss_pred --c--------EEEEEEeecCccccCCHHHHH-----HHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeec
Q psy16199 172 --N--------KVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE 236 (842)
Q Consensus 172 --~--------~Vtlv~r~~~~~~~~~~~~~~-----~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~ 236 (842)
+ +|+++++.++ .+|.+++.+. .+.+.||++++++.|+++. .+. |++.+
T Consensus 182 ~~~~~~~~~~~~V~LVea~p~-ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~---v~~~~----------- 244 (405)
T COG1252 182 LKKFRVDPSELRVILVEAGPR-ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT--PDG---VTLKD----------- 244 (405)
T ss_pred hhhhcCCccccEEEEEccCch-hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC--CCc---EEEcc-----------
Confidence 1 7999999985 6777766543 4667899999999999996 222 34443
Q ss_pred cCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC------chhHHHHHHH
Q psy16199 237 DEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL------SDTTVESVND 310 (842)
Q Consensus 237 ~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~------~~~~~~A~~~ 310 (842)
|++ +|++|++||++|.++ + .+.+++.|++.|++|++.||+....+++|+|||+|||+.. |.+++.|.+|
T Consensus 245 --g~~-~I~~~tvvWaaGv~a-~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qq 319 (405)
T COG1252 245 --GEE-EIPADTVVWAAGVRA-S-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQ 319 (405)
T ss_pred --CCe-eEecCEEEEcCCCcC-C-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHH
Confidence 222 699999999999994 3 4666643688899999999977777799999999999742 5789999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy16199 311 GKTAAWHIHKYIQEK 325 (842)
Q Consensus 311 G~~aA~~I~~~L~~~ 325 (842)
|+.+|.||.+.++++
T Consensus 320 g~~~a~ni~~~l~g~ 334 (405)
T COG1252 320 GEYAAKNIKARLKGK 334 (405)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999874
No 88
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.91 E-value=6e-23 Score=237.31 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=159.8
Q ss_pred HHhcCcEEEeceeec--cccceecc--c-cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCcc
Q psy16199 61 VKDLGVKIECERSLS--TRDITIEK--L-RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLC 135 (842)
Q Consensus 61 l~~~gV~i~~~~~v~--~~~v~~~~--~-~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c 135 (842)
+++.||+++.++... .+.+.+.. + ..+.||+||||||++ |+.+++|-+. +...++++.+.+..
T Consensus 99 ~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~-p~~~~~~~~~-~~~~~~~~~~~~~~---------- 166 (461)
T TIGR01350 99 LKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSR-PRSLPGPFDF-DGEVVITSTGALNL---------- 166 (461)
T ss_pred HHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCC-CCCCCCCCCC-CCceEEcchHHhcc----------
Confidence 445688888876532 12233322 1 246799999999998 7766664111 12235554433321
Q ss_pred CCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceE
Q psy16199 136 GGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 136 ~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~ 210 (842)
...+++|+|||||.+|+|+|..|.+.|.+ ||++++.+. .++..+.++ +.+.+.||++++++.+++
T Consensus 167 --------~~~~~~vvViGgG~~g~e~A~~l~~~g~~-Vtli~~~~~-~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 167 --------KEVPESLVIIGGGVIGIEFASIFASLGSK-VTVIEMLDR-ILPGEDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred --------ccCCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEEcCCC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 22345699999999999999999999875 999999874 444443332 345678999999999999
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChh--HHhhcCCcccCCCCCeeeCCCCCCCCC
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND--VLEAIKPVKLDKYGYPEVNYTTMATSV 288 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~--l~~~l~gl~~~~~G~i~vd~~~~~Ts~ 288 (842)
+..+++.+. +.+. +|+..++++|.||+++|.+ |+.. +++.+ |++++++|++.|| ++++|+.
T Consensus 237 i~~~~~~v~-v~~~-------------~g~~~~i~~D~vi~a~G~~-p~~~~l~~~~~-gl~~~~~g~i~vd-~~l~t~~ 299 (461)
T TIGR01350 237 VEKNDDQVV-YENK-------------GGETETLTGEKVLVAVGRK-PNTEGLGLENL-GVELDERGRIVVD-EYMRTNV 299 (461)
T ss_pred EEEeCCEEE-EEEe-------------CCcEEEEEeCEEEEecCCc-ccCCCCCcHhh-CceECCCCcEeeC-CCcccCC
Confidence 874444443 3322 1333579999999999999 5555 45665 7889999999999 7899999
Q ss_pred CCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 289 PGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 289 ~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 300 ~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~ 330 (461)
T TIGR01350 300 PGIYAIGDVIGGPMLAHVASHEGIVAAENIA 330 (461)
T ss_pred CCEEEeeecCCCcccHHHHHHHHHHHHHHHc
Confidence 9999999999878889999999999999985
No 89
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=4e-23 Score=239.05 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=159.2
Q ss_pred HHHhcCcEEEeceee--c----cccceec--cccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhccc
Q psy16199 60 LVKDLGVKIECERSL--S----TRDITIE--KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 131 (842)
Q Consensus 60 ~l~~~gV~i~~~~~v--~----~~~v~~~--~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~ 131 (842)
.++..+|+++.++.. + ...+.+. +...+.||+||||||+. |+.+|.+ +. +...++++.+.+..
T Consensus 109 ~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~-p~~~p~~-~~-~~~~~~~~~~~~~~------ 179 (475)
T PRK06327 109 LFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE-PRHLPGV-PF-DNKIILDNTGALNF------ 179 (475)
T ss_pred HHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC-CCCCCCC-CC-CCceEECcHHHhcc------
Confidence 345568998877642 2 1223332 22356799999999998 6544432 11 22334544332211
Q ss_pred CCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCC
Q psy16199 132 KGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFM 206 (842)
Q Consensus 132 ~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~ 206 (842)
...+++|+|||+|++|+|+|..+.+.|.+ ||++++.+. .++..+++ .+.+.+.||++++++
T Consensus 180 ------------~~~~~~vvVvGgG~~g~E~A~~l~~~g~~-Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~gi~i~~~~ 245 (475)
T PRK06327 180 ------------TEVPKKLAVIGAGVIGLELGSVWRRLGAE-VTILEALPA-FLAAADEQVAKEAAKAFTKQGLDIHLGV 245 (475)
T ss_pred ------------cccCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEeCCCc-cCCcCCHHHHHHHHHHHHHcCcEEEeCc
Confidence 22346799999999999999999999865 999999874 34444333 234567899999999
Q ss_pred CceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChh--HHhhcCCcccCCCCCeeeCCCCC
Q psy16199 207 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND--VLEAIKPVKLDKYGYPEVNYTTM 284 (842)
Q Consensus 207 ~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~--l~~~l~gl~~~~~G~i~vd~~~~ 284 (842)
.++++...++.+ .+.+.+. +|+..++++|.|++++|++ |+.. ..+.+ |++++++|++.|| +++
T Consensus 246 ~v~~i~~~~~~v-~v~~~~~-----------~g~~~~i~~D~vl~a~G~~-p~~~~l~~~~~-g~~~~~~G~i~vd-~~~ 310 (475)
T PRK06327 246 KIGEIKTGGKGV-SVAYTDA-----------DGEAQTLEVDKLIVSIGRV-PNTDGLGLEAV-GLKLDERGFIPVD-DHC 310 (475)
T ss_pred EEEEEEEcCCEE-EEEEEeC-----------CCceeEEEcCEEEEccCCc-cCCCCCCcHhh-CceeCCCCeEeEC-CCC
Confidence 999997444433 3544431 2344579999999999999 5555 23445 7889999999999 678
Q ss_pred CCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 285 ATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 285 ~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+|+.|+|||+|||+..+.+++.|..||+.||.+|.
T Consensus 311 ~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 311 RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHc
Confidence 99999999999999878899999999999999985
No 90
>PTZ00058 glutathione reductase; Provisional
Probab=99.90 E-value=6.7e-23 Score=238.65 Aligned_cols=193 Identities=18% Similarity=0.209 Sum_probs=143.3
Q ss_pred cccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHH
Q psy16199 83 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC 162 (842)
Q Consensus 83 ~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~ 162 (842)
++..+.||+||||||++ |+.+++| |. + .++++.+++.. .. +++|+|||||++|+|+
T Consensus 197 ~g~~i~ad~lVIATGS~-P~~P~Ip-G~-~--~v~ts~~~~~l------------------~~-pk~VvIIGgG~iGlE~ 252 (561)
T PTZ00058 197 DGQVIEGKNILIAVGNK-PIFPDVK-GK-E--FTISSDDFFKI------------------KE-AKRIGIAGSGYIAVEL 252 (561)
T ss_pred CCcEEECCEEEEecCCC-CCCCCCC-Cc-e--eEEEHHHHhhc------------------cC-CCEEEEECCcHHHHHH
Confidence 33456799999999998 7878887 53 2 35665544321 12 4569999999999999
Q ss_pred HHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCC-cEEEEEEEeecccCCCCeec
Q psy16199 163 ATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVE 236 (842)
Q Consensus 163 A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~-~v~~V~~~~~~~~~~G~~~~ 236 (842)
|..+.+.|.+ ||++++.++ .++..++++ +.+.+.||+++++..+.++...++ .+. +.+.+
T Consensus 253 A~~l~~~G~~-Vtli~~~~~-il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~----------- 318 (561)
T PTZ00058 253 INVVNRLGAE-SYIFARGNR-LLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD----------- 318 (561)
T ss_pred HHHHHHcCCc-EEEEEeccc-ccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC-----------
Confidence 9999999975 999999874 455554433 345677999999999999974222 232 22211
Q ss_pred cCCceEEEECCEEEEccccCcCChhHHhhc-CCcccCCCCCeeeCCCCCCCCCCCeEEeccCCC----------------
Q psy16199 237 DEEQRIKLKANYIISAFGSTLLDNDVLEAI-KPVKLDKYGYPEVNYTTMATSVPGVFCGGDTAN---------------- 299 (842)
Q Consensus 237 ~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l-~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~---------------- 299 (842)
...++++|.|++++|++ |+.+++... .++. +++|+|.|| ++++|+.|+|||+|||+.
T Consensus 319 ---~~~~i~aD~VlvA~Gr~-Pn~~~L~l~~~~~~-~~~G~I~VD-e~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~ 392 (561)
T PTZ00058 319 ---GRKYEHFDYVIYCVGRS-PNTEDLNLKALNIK-TPKGYIKVD-DNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLY 392 (561)
T ss_pred ---CCEEEECCEEEECcCCC-CCccccCcccccee-cCCCeEEEC-cCCccCCCCEEEeEeccCcccccccccccccccc
Confidence 12469999999999999 666554211 1333 467999999 689999999999999987
Q ss_pred ------------------CchhHHHHHHHHHHHHHHHH
Q psy16199 300 ------------------LSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 300 ------------------~~~~~~~A~~~G~~aA~~I~ 319 (842)
.+.+++.|..||+.||.+|.
T Consensus 393 ~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 393 NEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred ccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 56788999999999999995
No 91
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.90 E-value=4.8e-23 Score=237.92 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=159.2
Q ss_pred HHHHhcCcEEEecee--eccccceec--cc--cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccC
Q psy16199 59 ELVKDLGVKIECERS--LSTRDITIE--KL--RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKK 132 (842)
Q Consensus 59 ~~l~~~gV~i~~~~~--v~~~~v~~~--~~--~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~ 132 (842)
..++..||+++.+.. ++.+.+.+. ++ ..+.||+||||||++ |+.+++| |..+ ..+++.+.+..
T Consensus 108 ~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~-p~~p~ip-G~~~--~~~~~~~~~~~------- 176 (484)
T TIGR01438 108 VALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGER-PRYPGIP-GAKE--LCITSDDLFSL------- 176 (484)
T ss_pred HHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCC-CCCCCCC-Cccc--eeecHHHhhcc-------
Confidence 345667899987764 232334442 22 246799999999998 8888888 5422 23444333221
Q ss_pred CccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCC
Q psy16199 133 GLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMS 207 (842)
Q Consensus 133 ~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~ 207 (842)
...+++++|||||++|+|+|..|.+.|.+ ||++++. ..++..+.++ +.+.+.||++++++.
T Consensus 177 -----------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~-Vtli~~~--~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~ 242 (484)
T TIGR01438 177 -----------PYCPGKTLVVGASYVALECAGFLAGIGLD-VTVMVRS--ILLRGFDQDCANKVGEHMEEHGVKFKRQFV 242 (484)
T ss_pred -----------cccCCCEEEECCCHHHHHHHHHHHHhCCc-EEEEEec--ccccccCHHHHHHHHHHHHHcCCEEEeCce
Confidence 22356799999999999999999999975 9999974 3556555443 345678999999999
Q ss_pred ceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCC-CCCeeeCCCCC
Q psy16199 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDK-YGYPEVNYTTM 284 (842)
Q Consensus 208 v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~-~G~i~vd~~~~ 284 (842)
++++...++.+ .+++.++ ++..++++|.|++++|++ |++++ ++.. |+++++ +|+|.|| +++
T Consensus 243 v~~v~~~~~~~-~v~~~~~------------~~~~~i~~D~vl~a~G~~-pn~~~l~l~~~-gv~~~~~~G~I~Vd-~~~ 306 (484)
T TIGR01438 243 PIKVEQIEAKV-KVTFTDS------------TNGIEEEYDTVLLAIGRD-ACTRKLNLENV-GVKINKKTGKIPAD-EEE 306 (484)
T ss_pred EEEEEEcCCeE-EEEEecC------------CcceEEEeCEEEEEecCC-cCCCcCCcccc-cceecCcCCeEecC-CCc
Confidence 88887433332 3444331 112479999999999999 56654 3454 788875 4899999 689
Q ss_pred CCCCCCeEEeccCCC-CchhHHHHHHHHHHHHHHHH
Q psy16199 285 ATSVPGVFCGGDTAN-LSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 285 ~Ts~~gVfa~GD~~~-~~~~~~~A~~~G~~aA~~I~ 319 (842)
+|+.|+|||+|||+. .+...+.|..||+.+|.+|.
T Consensus 307 ~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~ 342 (484)
T TIGR01438 307 QTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLF 342 (484)
T ss_pred ccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHh
Confidence 999999999999986 46788899999999999985
No 92
>KOG2335|consensus
Probab=99.90 E-value=2.3e-23 Score=218.71 Aligned_cols=167 Identities=20% Similarity=0.328 Sum_probs=147.7
Q ss_pred ccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEec-
Q psy16199 563 LSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT- 640 (842)
Q Consensus 563 ~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~- 640 (842)
++|+|+|+ ||++++.+.++|++++. ++|+|+||++||+. ...++||+.|..+++++.+++++|++.++.||.+||.
T Consensus 73 D~PLIvQf-~~ndp~~ll~Aa~lv~~-y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI 150 (358)
T KOG2335|consen 73 DRPLIVQF-GGNDPENLLKAARLVQP-YCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRI 150 (358)
T ss_pred CCceEEEE-cCCCHHHHHHHHHHhhh-hcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 58999999 58999999999999987 67999999999944 4567799999999999999999999999999999985
Q ss_pred -CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcE
Q psy16199 641 -PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPI 719 (842)
Q Consensus 641 -p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipI 719 (842)
+|+.+..++|+.++++|++.++|++++.. ..|..+| |..++.|+.+++.++++||
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~--------------------~kg~~~~----pad~~~i~~v~~~~~~ipv 206 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTVHGRTRE--------------------QKGLKTG----PADWEAIKAVRENVPDIPV 206 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEEecccHH--------------------hcCCCCC----CcCHHHHHHHHHhCcCCcE
Confidence 56678999999999999999999877442 1232344 4559999999999977999
Q ss_pred EEecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhH
Q psy16199 720 LGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVV 756 (842)
Q Consensus 720 i~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~ 756 (842)
|+||+|.+.+|+..++. .||++||++++++++ |++|
T Consensus 207 iaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N-Pa~F 243 (358)
T KOG2335|consen 207 IANGNILSLEDVERCLKYTGADGVMSARGLLYN-PALF 243 (358)
T ss_pred EeeCCcCcHHHHHHHHHHhCCceEEecchhhcC-chhh
Confidence 99999999999999999 999999999999955 9888
No 93
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.90 E-value=2.3e-22 Score=226.28 Aligned_cols=264 Identities=15% Similarity=0.111 Sum_probs=178.5
Q ss_pred ccccCceeeecceeEeecCC--C--CccccccCCCCCCCHHHHHH-HHHHHHhcCcEEEeceeecc-----ccceecccc
Q psy16199 16 EMSTAKVCLSKDLPDIERPV--A--ALPDSSEIPQYRLPFDAVNF-EVELVKDLGVKIECERSLST-----RDITIEKLR 85 (842)
Q Consensus 16 ~~~~~~~~~g~~V~l~Ek~~--~--GG~~~~~iP~~~~~~~~v~~-~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~ 85 (842)
|.+.++.....+|+|++++. . .-.+.+.+.....+.+++.. ..+++++.|+++++++.|.. +.++.+ ..
T Consensus 18 a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~-~~ 96 (377)
T PRK04965 18 VKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQ-GN 96 (377)
T ss_pred HHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEEC-Ce
Confidence 34445556678899998862 1 11222333333445555543 34556788999998876532 223332 33
Q ss_pred ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHH
Q psy16199 86 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 165 (842)
Q Consensus 86 ~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~ 165 (842)
.+.||+||||||+. ++.+++| |... +++..+... ..... . .....++|+|||||++|+|+|..
T Consensus 97 ~~~yd~LVlATG~~-~~~p~i~-G~~~---v~~~~~~~~-~~~~~---------~--~~~~~~~vvViGgG~~g~e~A~~ 159 (377)
T PRK04965 97 QWQYDKLVLATGAS-AFVPPIP-GREL---MLTLNSQQE-YRAAE---------T--QLRDAQRVLVVGGGLIGTELAMD 159 (377)
T ss_pred EEeCCEEEECCCCC-CCCCCCC-CCce---EEEECCHHH-HHHHH---------H--HhhcCCeEEEECCCHHHHHHHHH
Confidence 56799999999998 7778888 5322 444322211 11100 0 01223459999999999999999
Q ss_pred HHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCc
Q psy16199 166 ALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 240 (842)
Q Consensus 166 l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~ 240 (842)
|.+.|. +|+++++.+.......+++ .+.+.+.||++++++.++++...++. ..+++.+ |
T Consensus 160 L~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~-------------g- 223 (377)
T PRK04965 160 LCRAGK-AVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG-IRATLDS-------------G- 223 (377)
T ss_pred HHhcCC-eEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE-EEEEEcC-------------C-
Confidence 999986 4999999874221222222 33456789999999999998743332 2344432 2
Q ss_pred eEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc----hhHHHHHHHHHHHHH
Q psy16199 241 RIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS----DTTVESVNDGKTAAW 316 (842)
Q Consensus 241 ~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~----~~~~~A~~~G~~aA~ 316 (842)
.+++||.||+|+|.+ |+..+++.+ |++.++ | +.|| ++++|+.|+|||+|||+..+ ..+..|..||+.||.
T Consensus 224 -~~i~~D~vI~a~G~~-p~~~l~~~~-gl~~~~-g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~ 297 (377)
T PRK04965 224 -RSIEVDAVIAAAGLR-PNTALARRA-GLAVNR-G-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAK 297 (377)
T ss_pred -cEEECCEEEECcCCC-cchHHHHHC-CCCcCC-C-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHH
Confidence 379999999999999 677788776 788763 5 8999 58999999999999998532 356779999999999
Q ss_pred HHH
Q psy16199 317 HIH 319 (842)
Q Consensus 317 ~I~ 319 (842)
||.
T Consensus 298 n~~ 300 (377)
T PRK04965 298 NLL 300 (377)
T ss_pred Hhc
Confidence 985
No 94
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.89 E-value=2.2e-22 Score=237.20 Aligned_cols=226 Identities=14% Similarity=0.159 Sum_probs=155.2
Q ss_pred cEEEecee--eccccceec-cccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCC
Q psy16199 66 VKIECERS--LSTRDITIE-KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKES 142 (842)
Q Consensus 66 V~i~~~~~--v~~~~v~~~-~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~ 142 (842)
|++..+.. ++.+.+.+. ++..+.||+||||||++ |+.++++ +. +..+++++.+.+..
T Consensus 249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~-P~~P~~~-~~-~~~~V~ts~d~~~l----------------- 308 (659)
T PTZ00153 249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGST-PNIPDNI-EV-DQKSVFTSDTAVKL----------------- 308 (659)
T ss_pred eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCC-CCCCCCC-CC-CCCcEEehHHhhhh-----------------
Confidence 67776653 222334332 33456799999999998 7666654 32 34567776554431
Q ss_pred CCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHH----H-H-HhcCcEEecCCCceEEEccCC
Q psy16199 143 LPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ----L-A-WEEKCEFLPFMSPVQVDVKDN 216 (842)
Q Consensus 143 ~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~----~-~-~~~gV~i~~~~~v~~v~~~~~ 216 (842)
...+++|+|||||++|+|+|..+.+.|. +||++++.+. .++..+.++. + + .+.||++++++.++++...++
T Consensus 309 -~~lpk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~~-ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~ 385 (659)
T PTZ00153 309 -EGLQNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSPQ-LLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG 385 (659)
T ss_pred -hhcCCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccCc-ccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC
Confidence 2235679999999999999999999986 4999999874 4555544432 2 2 357999999999999974322
Q ss_pred -cEEEEEEEeecccC-CCCeeccCCceEEEECCEEEEccccCcCChhH--HhhcCCcccCCCCCeeeCCCCCCCC-----
Q psy16199 217 -KIAGMQFNRTEQNE-KGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--LEAIKPVKLDKYGYPEVNYTTMATS----- 287 (842)
Q Consensus 217 -~v~~V~~~~~~~~~-~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l--~~~l~gl~~~~~G~i~vd~~~~~Ts----- 287 (842)
....+.+.+....+ ++. ....++..++++|.||+|+|++ |++++ ++.+ |+++++ |+|.|| ++++|+
T Consensus 386 ~~~v~v~~~~~~~~~~~~~-~~~~~~~~~i~aD~VlvAtGr~-Pnt~~L~l~~~-gi~~~~-G~I~VD-e~lqTs~~~~~ 460 (659)
T PTZ00153 386 NQPVIIGHSERQTGESDGP-KKNMNDIKETYVDSCLVATGRK-PNTNNLGLDKL-KIQMKR-GFVSVD-EHLRVLREDQE 460 (659)
T ss_pred ceEEEEEEecccccccccc-ccccccceEEEcCEEEEEECcc-cCCccCCchhc-CCcccC-CEEeEC-CCCCcCCCCCC
Confidence 11223332210000 000 0000122479999999999999 56654 3444 677764 999999 689997
Q ss_pred -CCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 288 -VPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 288 -~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+|+|||+|||++.+.+++.|..||+.||.+|.
T Consensus 461 ~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~ 493 (659)
T PTZ00153 461 VYDNIFCIGDANGKQMLAHTASHQALKVVDWIE 493 (659)
T ss_pred CCCCEEEEEecCCCccCHHHHHHHHHHHHHHHc
Confidence 69999999999878899999999999999995
No 95
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.89 E-value=5.1e-22 Score=226.50 Aligned_cols=270 Identities=12% Similarity=0.054 Sum_probs=175.4
Q ss_pred ecceeEeecC-C--CCccccccCCCCCCCHHHHHHHHHHHHhcCcEEEeceeecc----cccee----------cccccc
Q psy16199 25 SKDLPDIERP-V--AALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLST----RDITI----------EKLRKD 87 (842)
Q Consensus 25 g~~V~l~Ek~-~--~GG~~~~~iP~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~----~~v~~----------~~~~~~ 87 (842)
+++|||+|++ . .-+++..-.-....+.++.....++++..++++..+++... +.|.+ +++..+
T Consensus 33 ~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i 112 (424)
T PTZ00318 33 KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSV 112 (424)
T ss_pred CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEe
Confidence 6899999986 2 12222111111112234444445567777899888765432 33444 234457
Q ss_pred CCCEEEEccCCCCCCCCCCCCCCccccCceehhcch------HHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHH
Q psy16199 88 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFL------PRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD 161 (842)
Q Consensus 88 ~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l------~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e 161 (842)
.||+||||||+. ++.+++| |..+ .+++...+. +.+...........|+. .......+|+|||||++|+|
T Consensus 113 ~yD~LViAtGs~-~~~~~ip-G~~e--~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~vvVvGgG~~GvE 187 (424)
T PTZ00318 113 PYDKLVVAHGAR-PNTFNIP-GVEE--RAFFLKEVNHARGIRKRIVQCIERASLPTTSV-EERKRLLHFVVVGGGPTGVE 187 (424)
T ss_pred cCCEEEECCCcc-cCCCCCC-CHHH--cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh-HHHhccCEEEEECCCHHHHH
Confidence 899999999999 7777888 5433 222221111 11111000000001110 00011135999999999999
Q ss_pred HHHHHHHc--------------CCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEE
Q psy16199 162 CATSALRC--------------GANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQ 222 (842)
Q Consensus 162 ~A~~l~~~--------------G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~ 222 (842)
+|.+|... +. +||++++.+. .++..++. .+.+.+.||++++++.++++.. +. |+
T Consensus 188 ~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~-ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~---v~ 260 (424)
T PTZ00318 188 FAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSE-VLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE---VV 260 (424)
T ss_pred HHHHHHHHHHHHHHhhhhcccccC-EEEEEcCCCc-ccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE---EE
Confidence 99998752 44 5999998864 44444433 2346788999999999999862 22 44
Q ss_pred EEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCC-CCCCCeEEeccCCCC-
Q psy16199 223 FNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMA-TSVPGVFCGGDTANL- 300 (842)
Q Consensus 223 ~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~-Ts~~gVfa~GD~~~~- 300 (842)
+.+ | .++++|.|||++|.+ ++ .+.+.+ +++++++|+|.||+ +++ |++|+|||+|||+..
T Consensus 261 ~~~-------------g--~~i~~d~vi~~~G~~-~~-~~~~~~-~l~~~~~G~I~Vd~-~l~~~~~~~IfAiGD~a~~~ 321 (424)
T PTZ00318 261 LKD-------------G--EVIPTGLVVWSTGVG-PG-PLTKQL-KVDKTSRGRISVDD-HLRVKPIPNVFALGDCAANE 321 (424)
T ss_pred ECC-------------C--CEEEccEEEEccCCC-Cc-chhhhc-CCcccCCCcEEeCC-CcccCCCCCEEEEeccccCC
Confidence 432 2 278999999999999 44 467776 78888899999995 676 799999999999863
Q ss_pred ----chhHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 301 ----SDTTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 301 ----~~~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
+.+...|+.||+.+|.+|.+.+.+.
T Consensus 322 ~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 322 ERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 5678899999999999999998653
No 96
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.89 E-value=2.7e-22 Score=208.14 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=136.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++||. |.+++++.++++++++ ++|.||||++||+. +..++.|+.++++|+.+.++++++++ .++||+||++++
T Consensus 73 ~p~~vqi~-g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g 149 (233)
T cd02911 73 VLVGVNVR-SSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG 149 (233)
T ss_pred CeEEEEec-CCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 69999996 7899999999999987 67999999999964 45678899999999999999999998 699999999998
Q ss_pred h-hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 643 I-TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 643 ~-~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
+ .+..++++.++++|+|+|++.++. .| .+..++.+++++ . ++|||+
T Consensus 150 ~~~~~~~la~~l~~aG~d~ihv~~~~---------------------------~g---~~ad~~~I~~i~--~-~ipVIg 196 (233)
T cd02911 150 VDVDDEELARLIEKAGADIIHVDAMD---------------------------PG---NHADLKKIRDIS--T-ELFIIG 196 (233)
T ss_pred cCcCHHHHHHHHHHhCCCEEEECcCC---------------------------CC---CCCcHHHHHHhc--C-CCEEEE
Confidence 7 588999999999999998884331 11 122367787776 4 799999
Q ss_pred ecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHH
Q psy16199 722 IGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYI 760 (842)
Q Consensus 722 ~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~ 760 (842)
+|||.|++|+.++++.|||+||+||+ ..||+|+++.
T Consensus 197 nGgI~s~eda~~~l~~GaD~VmiGR~---~~p~~~~~~~ 232 (233)
T cd02911 197 NNSVTTIESAKEMFSYGADMVSVARA---SLPENIEWLV 232 (233)
T ss_pred ECCcCCHHHHHHHHHcCCCEEEEcCC---CCchHHHHhh
Confidence 99999999999999999999999999 3599998774
No 97
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.89 E-value=8.1e-22 Score=220.87 Aligned_cols=264 Identities=17% Similarity=0.184 Sum_probs=176.3
Q ss_pred eeecceeEeecCCCCccccccCCCC----CCCHHHHHHHHHHHHhcCcEEEeceeecc----ccceeccccccCCCEEEE
Q psy16199 23 CLSKDLPDIERPVAALPDSSEIPQY----RLPFDAVNFEVELVKDLGVKIECERSLST----RDITIEKLRKDGYTAIFI 94 (842)
Q Consensus 23 ~~g~~V~l~Ek~~~GG~~~~~iP~~----~~~~~~v~~~~~~l~~~gV~i~~~~~v~~----~~v~~~~~~~~~yd~lVl 94 (842)
..+++|+|+|++..--.. ..+|.+ ..+.++.....+++++.|++|+.++.+.. +.|.++++..+.||+|||
T Consensus 23 ~~~~~I~li~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~Lvi 101 (364)
T TIGR03169 23 LPGVRVTLINPSSTTPYS-GMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSL 101 (364)
T ss_pred CCCCEEEEECCCCCCccc-chhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEE
Confidence 568999999987221111 112221 12345555556777888999998865432 335566666678999999
Q ss_pred ccCCCCCCCCCCCCCCccccCceeh---hcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHc--
Q psy16199 95 GIGKPNANVIPIFQGLTEEMGFYTS---KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC-- 169 (842)
Q Consensus 95 AtGs~~~~~~~i~~G~~~~~gv~~~---~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~-- 169 (842)
|||+. ++.+++| |. .+++++. .++......... | .|+ ....++|+|||+|++|+|+|..|.+.
T Consensus 102 AtG~~-~~~~~i~-g~--~~~~~~~~~~~~~~~~~~~~~~---~-~~~----~~~~~~vvVvG~G~~g~E~A~~l~~~~~ 169 (364)
T TIGR03169 102 DVGST-TPLSGVE-GA--ADLAVPVKPIENFLARWEALLE---S-ADA----PPGTKRLAVVGGGAAGVEIALALRRRLP 169 (364)
T ss_pred ccCCC-CCCCCCC-cc--cccccccCCHHHHHHHHHHHHH---H-Hhc----CCCCceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999 7777887 52 2333322 122221111100 0 111 11124599999999999999999753
Q ss_pred --CC-cEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCce
Q psy16199 170 --GA-NKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 241 (842)
Q Consensus 170 --G~-~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~ 241 (842)
|. .+|+++ +.+ ..++..++. .+.+.+.||++++++.++++. ++ .+.+.+ |
T Consensus 170 ~~g~~~~V~li-~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~-------------g-- 227 (364)
T TIGR03169 170 KRGLRGQVTLI-AGA-SLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILAD-------------G-- 227 (364)
T ss_pred hcCCCceEEEE-eCC-cccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCC-------------C--
Confidence 32 369999 443 233333222 234667899999999998885 22 244432 2
Q ss_pred EEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCC-CCCCeEEeccCCCC-----chhHHHHHHHHHHHH
Q psy16199 242 IKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMAT-SVPGVFCGGDTANL-----SDTTVESVNDGKTAA 315 (842)
Q Consensus 242 ~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~T-s~~gVfa~GD~~~~-----~~~~~~A~~~G~~aA 315 (842)
.++++|.||+++|.+ |+. ++... |++++++|++.|| ++++| +.|+|||+|||+.. ++....|+.||+.+|
T Consensus 228 ~~i~~D~vi~a~G~~-p~~-~l~~~-gl~~~~~g~i~vd-~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a 303 (364)
T TIGR03169 228 RTLPADAILWATGAR-APP-WLAES-GLPLDEDGFLRVD-PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILA 303 (364)
T ss_pred CEEecCEEEEccCCC-hhh-HHHHc-CCCcCCCCeEEEC-CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHH
Confidence 278999999999999 554 44444 7888888999999 57887 99999999999742 356788999999999
Q ss_pred HHHHHHHHhc
Q psy16199 316 WHIHKYIQEK 325 (842)
Q Consensus 316 ~~I~~~L~~~ 325 (842)
.||.+.+.+.
T Consensus 304 ~ni~~~l~g~ 313 (364)
T TIGR03169 304 ANLRASLRGQ 313 (364)
T ss_pred HHHHHHhcCC
Confidence 9999998664
No 98
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.89 E-value=8.4e-22 Score=228.65 Aligned_cols=211 Identities=20% Similarity=0.218 Sum_probs=149.8
Q ss_pred cCcEEEeceee--ccccceecc---ccccCCCEEEEccCCCCCCCC-CCCCCCccccCceehhcchHHHhhcccCCccCC
Q psy16199 64 LGVKIECERSL--STRDITIEK---LRKDGYTAIFIGIGKPNANVI-PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGG 137 (842)
Q Consensus 64 ~gV~i~~~~~v--~~~~v~~~~---~~~~~yd~lVlAtGs~~~~~~-~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~ 137 (842)
.+|++..++.. +.+.+.+.+ ...+.||+||||||+. |+.+ ++| |... ..+++.+++..
T Consensus 115 ~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~-p~~p~~i~-G~~~--~~~~~~~~~~~------------ 178 (499)
T PTZ00052 115 SKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGR-PSIPEDVP-GAKE--YSITSDDIFSL------------ 178 (499)
T ss_pred cCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCC-CCCCCCCC-Cccc--eeecHHHHhhh------------
Confidence 46777665422 113344322 2346799999999998 6655 376 5322 23444443321
Q ss_pred CCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEecCCCceEEE
Q psy16199 138 CKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVD 212 (842)
Q Consensus 138 c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~~~~v~~v~ 212 (842)
...+++++|||||++|+|+|..|++.|.+ ||++++.. .++..+++ .+.+.+.||++++++.++++.
T Consensus 179 ------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~-Vtli~~~~--~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~ 249 (499)
T PTZ00052 179 ------SKDPGKTLIVGASYIGLETAGFLNELGFD-VTVAVRSI--PLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIE 249 (499)
T ss_pred ------hcCCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEEcCc--ccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEE
Confidence 22345799999999999999999999975 99998742 44555443 234567899999999998886
Q ss_pred ccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHH--hhcCCcccCCCCCeeeCCCCCCCCCCC
Q psy16199 213 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL--EAIKPVKLDKYGYPEVNYTTMATSVPG 290 (842)
Q Consensus 213 ~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~--~~l~gl~~~~~G~i~vd~~~~~Ts~~g 290 (842)
..++.+ .+.+.+ |+ ++++|.|++++|++ |+.+++ +.+ |++++++|++.+++ . +|+.|+
T Consensus 250 ~~~~~~-~v~~~~-------------g~--~i~~D~vl~a~G~~-pn~~~l~l~~~-g~~~~~~G~ii~~~-~-~Ts~p~ 309 (499)
T PTZ00052 250 KMDDKI-KVLFSD-------------GT--TELFDTVLYATGRK-PDIKGLNLNAI-GVHVNKSNKIIAPN-D-CTNIPN 309 (499)
T ss_pred EcCCeE-EEEECC-------------CC--EEEcCEEEEeeCCC-CCccccCchhc-CcEECCCCCEeeCC-C-cCCCCC
Confidence 433332 244432 22 57999999999999 666654 455 78999999877774 4 999999
Q ss_pred eEEeccCCC-CchhHHHHHHHHHHHHHHHH
Q psy16199 291 VFCGGDTAN-LSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 291 Vfa~GD~~~-~~~~~~~A~~~G~~aA~~I~ 319 (842)
|||+|||+. .+..+..|..||+.+|.+|.
T Consensus 310 IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 310 IFAVGDVVEGRPELTPVAIKAGILLARRLF 339 (499)
T ss_pred EEEEEEecCCCcccHHHHHHHHHHHHHHHh
Confidence 999999985 46788999999999999985
No 99
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.88 E-value=5e-23 Score=223.22 Aligned_cols=166 Identities=23% Similarity=0.368 Sum_probs=130.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++||. |++++.+.++|+.+.+.|+|+|+||++|| .....+|+|++|+++|+.+.++++++++.+++||.||+...
T Consensus 54 ~p~~~Ql~-g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g 132 (309)
T PF01207_consen 54 RPLIVQLF-GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLG 132 (309)
T ss_dssp -TEEEEEE--S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESE
T ss_pred cceeEEEe-eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccc
Confidence 69999996 78999999999999988999999999999 44567889999999999999999999999999999999764
Q ss_pred hh----cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCc
Q psy16199 643 IT----NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFP 718 (842)
Q Consensus 643 ~~----~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ip 718 (842)
++ +..++++.++++|+++|+++.+ +....++|++. |+.++++++.+ ++|
T Consensus 133 ~~~~~~~~~~~~~~l~~~G~~~i~vH~R----------------------t~~q~~~~~a~----w~~i~~i~~~~-~ip 185 (309)
T PF01207_consen 133 WDDSPEETIEFARILEDAGVSAITVHGR----------------------TRKQRYKGPAD----WEAIAEIKEAL-PIP 185 (309)
T ss_dssp CT--CHHHHHHHHHHHHTT--EEEEECS-----------------------TTCCCTS-------HHHHHHCHHC--TSE
T ss_pred cccchhHHHHHHHHhhhcccceEEEecC----------------------chhhcCCcccc----hHHHHHHhhcc-cce
Confidence 43 5889999999999999999554 44566777555 99999999999 599
Q ss_pred EEEecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhHHH
Q psy16199 719 ILGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVVDD 758 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~ 758 (842)
||+||||.|.+|+.+++. .|+++||+||+++. +||+|.+
T Consensus 186 vi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~-nP~lf~~ 225 (309)
T PF01207_consen 186 VIANGDIFSPEDAERMLEQTGADGVMIGRGALG-NPWLFRE 225 (309)
T ss_dssp EEEESS--SHHHHHHHCCCH-SSEEEESHHHCC--CCHHCH
T ss_pred eEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh-cCHHhhh
Confidence 999999999999999998 69999999999995 5999984
No 100
>KOG1336|consensus
Probab=99.88 E-value=1.3e-21 Score=212.72 Aligned_cols=259 Identities=19% Similarity=0.252 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCcEEEeceeecc-----ccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhc
Q psy16199 55 NFEVELVKDLGVKIECERSLST-----RDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATS 129 (842)
Q Consensus 55 ~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~ 129 (842)
.+..+++++.||++++++.+.. +.+...+++...|++|+||||+. ++.+++| |. +.+++.+..+.-+.-...
T Consensus 131 ~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~-~~~l~~p-G~-~~~nv~~ireieda~~l~ 207 (478)
T KOG1336|consen 131 KRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSS-AKTLDIP-GV-ELKNVFYLREIEDANRLV 207 (478)
T ss_pred ccChhhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCc-cccCCCC-Cc-cccceeeeccHHHHHHHH
Confidence 3445678999999999997753 45666677788899999999996 9999999 64 577777643322211110
Q ss_pred ccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEEec
Q psy16199 130 SKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLP 204 (842)
Q Consensus 130 ~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i~~ 204 (842)
......++||++|+|++|+|+|.+|...+ .+||+|++.+...-...-+. ...+.+.||++++
T Consensus 208 ------------~~~~~~~~vV~vG~G~ig~Evaa~l~~~~-~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~ 274 (478)
T KOG1336|consen 208 ------------AAIQLGGKVVCVGGGFIGMEVAAALVSKA-KSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYL 274 (478)
T ss_pred ------------HHhccCceEEEECchHHHHHHHHHHHhcC-ceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEE
Confidence 00223556999999999999999998874 56999999875322222222 2345678999999
Q ss_pred CCCceEEEc-cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCC
Q psy16199 205 FMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTT 283 (842)
Q Consensus 205 ~~~v~~v~~-~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~ 283 (842)
++.+.++.. .+|++..|.+.++ .+++||.||+.+|.+ |++.+.+. |..++++|.|.|| +.
T Consensus 275 ~t~~s~l~~~~~Gev~~V~l~dg---------------~~l~adlvv~GiG~~-p~t~~~~~--g~~~~~~G~i~V~-~~ 335 (478)
T KOG1336|consen 275 GTVVSSLEGNSDGEVSEVKLKDG---------------KTLEADLVVVGIGIK-PNTSFLEK--GILLDSKGGIKVD-EF 335 (478)
T ss_pred ecceeecccCCCCcEEEEEeccC---------------CEeccCeEEEeeccc-cccccccc--cceecccCCEeeh-hc
Confidence 999999874 3478887877653 389999999999999 78777775 6788999999999 79
Q ss_pred CCCCCCCeEEeccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceeeccccccceeeec
Q psy16199 284 MATSVPGVFCGGDTANLS----------DTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFMSHIDLVDISVEIC 353 (842)
Q Consensus 284 ~~Ts~~gVfa~GD~~~~~----------~~~~~A~~~G~~aA~~I~~~L~~~~~~~~~~~~~~p~~~t~i~~~~L~~~~~ 353 (842)
++|++|+|||+||++..| ..+..|..+|+.|...|...-+ .. ...+|+|||..- .+++++.
T Consensus 336 f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~-----~~--~~~lPyf~t~~f--~~~~~~~ 406 (478)
T KOG1336|consen 336 FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQ-----DA--YDYLPYFYTRFF--SLSWRFA 406 (478)
T ss_pred eeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCc-----cc--ccccchHHHHHh--hhhcccc
Confidence 999999999999998643 3556788888877776643211 11 336899999654 4445555
Q ss_pred cccc
Q psy16199 354 GLKF 357 (842)
Q Consensus 354 G~~~ 357 (842)
|.-+
T Consensus 407 G~g~ 410 (478)
T KOG1336|consen 407 GDGV 410 (478)
T ss_pred CcCc
Confidence 5543
No 101
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.87 E-value=7.1e-21 Score=207.81 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=147.5
Q ss_pred cceEEEeccCC----CHhHHHHHHHHHhhcCcCEEEEeccCCCC--CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEE
Q psy16199 564 SILIASIMCTY----NKDDWLELSKKTEKAGADALELNLSCPHG--MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFV 637 (842)
Q Consensus 564 ~pvi~si~~g~----~~e~~~~~a~~~~~agaD~ielN~scP~~--~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~v 637 (842)
.|+++|+++.. +.+++.++++++ ++|+++||+++|+. +.+.+ .+++.+.+.++++++.+++||++
T Consensus 113 ~p~~~Nl~~~~~~~~~~~~~~~~i~~~---~adalel~l~~~q~~~~~~~~------~df~~~~~~i~~l~~~~~vPViv 183 (326)
T cd02811 113 GPLIANLGAVQLNGYGVEEARRAVEMI---EADALAIHLNPLQEAVQPEGD------RDFRGWLERIEELVKALSVPVIV 183 (326)
T ss_pred ceEEeecCccccCCCCHHHHHHHHHhc---CCCcEEEeCcchHhhcCCCCC------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 68888887632 455555555544 69999999998743 33322 57778889999999999999999
Q ss_pred EecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCC
Q psy16199 638 KLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 638 Kl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~i 717 (842)
|+.+. ....+.|+.+.++|+|+|+++|. ++++...++..+.+..+. .....+.. .-.| +...+.++++.++++
T Consensus 184 K~~g~-g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~---~~~~~~~~-~g~~-t~~~l~~~~~~~~~i 256 (326)
T cd02811 184 KEVGF-GISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQ---RLAEYFAD-WGIP-TAASLLEVRSALPDL 256 (326)
T ss_pred EecCC-CCCHHHHHHHHHcCCCEEEECCC-CCCccccccccccccccc---cccccccc-cccc-HHHHHHHHHHHcCCC
Confidence 99875 34468899999999999999885 776666666432221100 00000110 0012 356677777776579
Q ss_pred cEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCc-------hhHHHHHHHHHHHHHhcCC-CccccC
Q psy16199 718 PILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDF-------TVVDDYITGLQTLLYLKST-QLKGWD 778 (842)
Q Consensus 718 pIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp-------~~~~~i~~~l~~~m~~~g~-~i~~~~ 778 (842)
|||++|||+++.|+.++|++||++||++|+++.... .+++.+.++|+.+|.+.|+ +++|++
T Consensus 257 pIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 257 PLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 999999999999999999999999999999884433 5899999999999999999 998875
No 102
>KOG0405|consensus
Probab=99.87 E-value=1.7e-21 Score=201.53 Aligned_cols=219 Identities=19% Similarity=0.144 Sum_probs=163.6
Q ss_pred HHhcCcEEEecee--ecccc--ceecccc--ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCc
Q psy16199 61 VKDLGVKIECERS--LSTRD--ITIEKLR--KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGL 134 (842)
Q Consensus 61 l~~~gV~i~~~~~--v~~~~--v~~~~~~--~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~ 134 (842)
+.+.+|+++.+.. ++... |...++. .+.+.+++||||.+ |..|.|| |. +.-+++..|++.
T Consensus 120 L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~-p~~PnIp-G~---E~gidSDgff~L--------- 185 (478)
T KOG0405|consen 120 LAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGR-PIIPNIP-GA---ELGIDSDGFFDL--------- 185 (478)
T ss_pred ccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCc-cCCCCCC-ch---hhccccccccch---------
Confidence 4455788877752 22222 3333443 25789999999999 7777888 42 223556666642
Q ss_pred cCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHHH-----HHhcCcEEecCCCce
Q psy16199 135 CGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQL-----AWEEKCEFLPFMSPV 209 (842)
Q Consensus 135 c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~-----~~~~gV~i~~~~~v~ 209 (842)
+..++|++|||+|++|+|+|..++.+|.+ ++++.|.. ..++.+++.++. +..+||++|.++.++
T Consensus 186 ---------ee~Pkr~vvvGaGYIavE~Agi~~gLgse-thlfiR~~-kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~ 254 (478)
T KOG0405|consen 186 ---------EEQPKRVVVVGAGYIAVEFAGIFAGLGSE-THLFIRQE-KVLRGFDEMISDLVTEHLEGRGINVHKNSSVT 254 (478)
T ss_pred ---------hhcCceEEEEccceEEEEhhhHHhhcCCe-eEEEEecc-hhhcchhHHHHHHHHHHhhhcceeecccccce
Confidence 66788999999999999999999999986 99999987 467778877653 556799999999999
Q ss_pred EEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCC
Q psy16199 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVP 289 (842)
Q Consensus 210 ~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~ 289 (842)
++...+.....+.... | ....+|.++||+|+.|....+--+..|++++++|.|.|| ++++|++|
T Consensus 255 ~v~K~~~g~~~~i~~~-------------~--~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp 318 (478)
T KOG0405|consen 255 KVIKTDDGLELVITSH-------------G--TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVP 318 (478)
T ss_pred eeeecCCCceEEEEec-------------c--ccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCC
Confidence 9875333322222221 2 234589999999999555555433349999999999999 79999999
Q ss_pred CeEEeccCCCCchhHHHHHHHHHHHHHHHHH
Q psy16199 290 GVFCGGDTANLSDTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 290 gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~~ 320 (842)
+||++||+++.-.+...|++.|+..|..+..
T Consensus 319 ~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 319 SIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred ceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 9999999998777888999999988877653
No 103
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.86 E-value=7.5e-21 Score=199.19 Aligned_cols=170 Identities=26% Similarity=0.361 Sum_probs=145.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+++||. |.++++|.++++++.++|+|+||||++||+. ...+++|+++..+++.+.++++++++.+.+||.+|++..
T Consensus 55 ~p~~~qi~-g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 55 RPLIVQLG-GSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred CCEEEEEc-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 79999996 6789999999999999999999999999943 345679999999999999999999999999999999764
Q ss_pred h--h-cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcE
Q psy16199 643 I--T-NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPI 719 (842)
Q Consensus 643 ~--~-~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipI 719 (842)
. . +..++++.+.+.|+|+|+++.+.. .+++++ +..+++++++++.+ ++||
T Consensus 134 ~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~----------------------~~~~~~----~~~~~~~~~i~~~~-~ipv 186 (231)
T cd02801 134 WDDEEETLELAKALEDAGASALTVHGRTR----------------------EQRYSG----PADWDYIAEIKEAV-SIPV 186 (231)
T ss_pred cCCchHHHHHHHHHHHhCCCEEEECCCCH----------------------HHcCCC----CCCHHHHHHHHhCC-CCeE
Confidence 4 2 678999999999999999965321 112222 23488899999887 7999
Q ss_pred EEecCcCCHHHHHHHHHh-CCCEEEEehhhhccCchhHHHHHHH
Q psy16199 720 LGIGGIDSADVALQFIQA-GAHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 720 i~~GGI~t~~da~~~l~~-GA~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
+++|||.+++|+.+++.. |||+||+||+++. +|++++++.+.
T Consensus 187 i~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~-~P~~~~~~~~~ 229 (231)
T cd02801 187 IANGDIFSLEDALRCLEQTGVDGVMIGRGALG-NPWLFREIKEL 229 (231)
T ss_pred EEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh-CCHHHHhhhhc
Confidence 999999999999999997 8999999999995 69999998653
No 104
>KOG1335|consensus
Probab=99.86 E-value=3.8e-21 Score=201.36 Aligned_cols=197 Identities=20% Similarity=0.214 Sum_probs=153.5
Q ss_pred cCCCEEEEccCCCCCCCCCCCCCCc-cccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHH
Q psy16199 87 DGYTAIFIGIGKPNANVIPIFQGLT-EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 165 (842)
Q Consensus 87 ~~yd~lVlAtGs~~~~~~~i~~G~~-~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~ 165 (842)
..++++||||||..+ |+| |++ +..-+.++...|. +...+.+.+|||+|.+|+|++..
T Consensus 172 i~aKnIiiATGSeV~---~~P-GI~IDekkIVSStgALs------------------L~~vPk~~~viG~G~IGLE~gsV 229 (506)
T KOG1335|consen 172 IKAKNIIIATGSEVT---PFP-GITIDEKKIVSSTGALS------------------LKEVPKKLTVIGAGYIGLEMGSV 229 (506)
T ss_pred EeeeeEEEEeCCccC---CCC-CeEecCceEEecCCccc------------------hhhCcceEEEEcCceeeeehhhH
Confidence 458999999999733 344 543 3344666544443 25678899999999999999999
Q ss_pred HHHcCCcEEEEEEeecCccccCCHHHHHH-----HHhcCcEEecCCCceEEEc-cCCcEEEEEEEeecccCCCCeeccCC
Q psy16199 166 ALRCGANKVLVVFRKGCTNIRAVPEEVQL-----AWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEE 239 (842)
Q Consensus 166 l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~-----~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~~~~~G~~~~~~g 239 (842)
..|+|++ ||+++--+ ...+..+.|++. +...|+.|++++.+..+.. ++|.+. |++.+.. ++
T Consensus 230 ~~rLGse-VT~VEf~~-~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~ak----------~~ 296 (506)
T KOG1335|consen 230 WSRLGSE-VTVVEFLD-QIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENAK----------TG 296 (506)
T ss_pred HHhcCCe-EEEEEehh-hhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE-EEEEecC----------CC
Confidence 9999986 99999776 356667766643 4567999999999998875 334443 6666542 45
Q ss_pred ceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHHHHH
Q psy16199 240 QRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319 (842)
Q Consensus 240 ~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~~I~ 319 (842)
+..+++||.+++++|++|....|--+..|++.|++|++.+| ..++|.+|+||++||+..+|.+++.|..||-.+...|.
T Consensus 297 k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~ 375 (506)
T KOG1335|consen 297 KKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIA 375 (506)
T ss_pred ceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhhchhheeeec
Confidence 67799999999999999655555323238999999999999 68999999999999999999999999999988877764
No 105
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.84 E-value=4.5e-20 Score=203.02 Aligned_cols=216 Identities=15% Similarity=0.196 Sum_probs=163.4
Q ss_pred cceEEEeccCC----CHhHHHHHHHHHhhcCcCEEEEeccCCCC--CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEE
Q psy16199 564 SILIASIMCTY----NKDDWLELSKKTEKAGADALELNLSCPHG--MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFV 637 (842)
Q Consensus 564 ~pvi~si~~g~----~~e~~~~~a~~~~~agaD~ielN~scP~~--~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~v 637 (842)
.|+|+||++.. ++++..++++++ ++|+++||++||+. +.+.+ .+++.+.+.++++++.+++||+|
T Consensus 121 ~p~~aNl~~~~~~~~~~~~~~~~~~~~---~adal~l~l~~~qe~~~p~g~------~~f~~~le~i~~i~~~~~vPViv 191 (352)
T PRK05437 121 GLLFANLGAVQLYGYGVEEAQRAVEMI---EADALQIHLNPLQELVQPEGD------RDFRGWLDNIAEIVSALPVPVIV 191 (352)
T ss_pred ceEEeecCccccCCCCHHHHHHHHHhc---CCCcEEEeCccchhhcCCCCc------ccHHHHHHHHHHHHHhhCCCEEE
Confidence 89999998743 356666665554 68999999999854 33222 57788889999999999999999
Q ss_pred EecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCC
Q psy16199 638 KLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 638 Kl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~i 717 (842)
|+.+. ....+.|+.+.++|+|+|+++|. +++...+++..+.... .......+ .-.| +...+.++++...++
T Consensus 192 K~~g~-g~s~~~a~~l~~~Gvd~I~Vsg~-GGt~~~~ie~~R~~~~-----~~~~~~~~-~g~p-t~~~l~~i~~~~~~i 262 (352)
T PRK05437 192 KEVGF-GISKETAKRLADAGVKAIDVAGA-GGTSWAAIENYRARDD-----RLASYFAD-WGIP-TAQSLLEARSLLPDL 262 (352)
T ss_pred EeCCC-CCcHHHHHHHHHcCCCEEEECCC-CCCCccchhhhhhhcc-----cccccccc-ccCC-HHHHHHHHHHhcCCC
Confidence 99864 34478899999999999999986 5666666664221100 00011111 1123 466777777774479
Q ss_pred cEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc----Cch----hHHHHHHHHHHHHHhcCC-CccccCCCCCCCcccc
Q psy16199 718 PILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ----DFT----VVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQ 788 (842)
Q Consensus 718 pIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~----gp~----~~~~i~~~l~~~m~~~g~-~i~~~~~~~~~~~~~~ 788 (842)
|||++|||+++.|+.++|++||++|+++|++++. |+. +++.+.++|+.+|...|+ +++|+.+. +...
T Consensus 263 pvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~----~~~~ 338 (352)
T PRK05437 263 PIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKV----PLVL 338 (352)
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC----CEEe
Confidence 9999999999999999999999999999999854 565 899999999999999999 99999875 5556
Q ss_pred CCCCCCcchhhccC
Q psy16199 789 KGKPAYQFRDKEGK 802 (842)
Q Consensus 789 ~g~~~~~~~~~~g~ 802 (842)
.|+ +.+|.+.|++
T Consensus 339 ~~~-~~~~~~~~~~ 351 (352)
T PRK05437 339 SGE-LREWLEQRGI 351 (352)
T ss_pred cHh-HHHHHHHhCC
Confidence 665 6777777765
No 106
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.84 E-value=9.6e-20 Score=199.52 Aligned_cols=201 Identities=15% Similarity=0.143 Sum_probs=146.6
Q ss_pred cceEEEeccCCCHh-HHHHHHHHHhhcCcCEEEEeccCCCC--CCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEec
Q psy16199 564 SILIASIMCTYNKD-DWLELSKKTEKAGADALELNLSCPHG--MGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e-~~~~~a~~~~~agaD~ielN~scP~~--~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~ 640 (842)
.|+|+|+++....+ +|.++.+.++..+||++++|++|++. +.+++ .+++.+.+.++++++.+++||+||+.
T Consensus 114 ~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~------~~f~~~le~i~~i~~~~~vPVivK~~ 187 (333)
T TIGR02151 114 GPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGD------RNFKGWLEKIAEICSQLSVPVIVKEV 187 (333)
T ss_pred CcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 79999997632222 24445555555579999999999854 33322 46777889999999999999999998
Q ss_pred CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh-hCCCCcE
Q psy16199 641 PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK-MFPNFPI 719 (842)
Q Consensus 641 p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~-~~~~ipI 719 (842)
+. ....+.|+.++++|+|+|+++|. +++...+++..+... ...|.+--..-.| +...+.++++ .. ++||
T Consensus 188 g~-g~~~~~a~~L~~aGvd~I~Vsg~-gGt~~~~ie~~r~~~------~~~~~~~~~~g~~-t~~~l~~~~~~~~-~ipV 257 (333)
T TIGR02151 188 GF-GISKEVAKLLADAGVSAIDVAGA-GGTSWAQVENYRAKG------SNLASFFNDWGIP-TAASLLEVRSDAP-DAPI 257 (333)
T ss_pred CC-CCCHHHHHHHHHcCCCEEEECCC-CCCcccchhhhcccc------cccchhhhcccHh-HHHHHHHHHhcCC-CCeE
Confidence 64 45679999999999999999986 355556655322100 0001110001012 2445566665 33 6999
Q ss_pred EEecCcCCHHHHHHHHHhCCCEEEEehhhhc----cCch----hHHHHHHHHHHHHHhcCC-CccccCCC
Q psy16199 720 LGIGGIDSADVALQFIQAGAHAVQICSAVQN----QDFT----VVDDYITGLQTLLYLKST-QLKGWDGQ 780 (842)
Q Consensus 720 i~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~----~gp~----~~~~i~~~l~~~m~~~g~-~i~~~~~~ 780 (842)
|++|||+++.|+.++|++|||+|+++|+++. .|+. +++.+.++|+.+|.+.|+ +++|+++.
T Consensus 258 IasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~ 327 (333)
T TIGR02151 258 IASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKV 327 (333)
T ss_pred EEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccC
Confidence 9999999999999999999999999999994 4555 788899999999999999 99999754
No 107
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.84 E-value=1.3e-19 Score=225.55 Aligned_cols=262 Identities=15% Similarity=0.095 Sum_probs=187.2
Q ss_pred eecceeEeecC-CCCccccccCC--CCCCCHHHHHHHHHHHHhcC-cEEEeceeecc----ccc-ee-------------
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIP--QYRLPFDAVNFEVELVKDLG-VKIECERSLST----RDI-TI------------- 81 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP--~~~~~~~~v~~~~~~l~~~g-V~i~~~~~v~~----~~v-~~------------- 81 (842)
.|++|+|+|+. .+||++.+..+ ....+.+++....++++..+ +++++++.|.. ..+ .+
T Consensus 185 ~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~ 264 (985)
T TIGR01372 185 AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKG 264 (985)
T ss_pred CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCC
Confidence 59999999996 89998865322 12334566677778887775 99998875521 000 00
Q ss_pred ---ccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChh
Q psy16199 82 ---EKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 158 (842)
Q Consensus 82 ---~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~ 158 (842)
+....+.||+||||||+. ++++++| | .+.++|++.......+... .....++|+|||+|++
T Consensus 265 ~~~~~~~~i~a~~VILATGa~-~r~~pip-G-~~~pgV~~~~~~~~~l~~~-------------~~~~gk~VvViG~G~~ 328 (985)
T TIGR01372 265 VPRERLWRIRAKRVVLATGAH-ERPLVFA-N-NDRPGVMLAGAARTYLNRY-------------GVAPGKRIVVATNNDS 328 (985)
T ss_pred ccccceEEEEcCEEEEcCCCC-CcCCCCC-C-CCCCCcEEchHHHHHHHhh-------------CcCCCCeEEEECCCHH
Confidence 111245699999999998 8889998 6 4778998864433322211 0122345999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccC
Q psy16199 159 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE 238 (842)
Q Consensus 159 g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~ 238 (842)
|+|+|..|.+.|.+.|+++++.+. + .....+.+++.||++++++.++++. +++++.+|++... +
T Consensus 329 g~e~A~~L~~~G~~vV~vv~~~~~--~--~~~l~~~L~~~GV~i~~~~~v~~i~-g~~~v~~V~l~~~-----------~ 392 (985)
T TIGR01372 329 AYRAAADLLAAGIAVVAIIDARAD--V--SPEARAEARELGIEVLTGHVVAATE-GGKRVSGVAVARN-----------G 392 (985)
T ss_pred HHHHHHHHHHcCCceEEEEccCcc--h--hHHHHHHHHHcCCEEEcCCeEEEEe-cCCcEEEEEEEec-----------C
Confidence 999999999999777899887642 1 2344566778899999999999997 5667777777631 2
Q ss_pred CceEEEECCEEEEccccCcCChhHHhhcCCccc--CCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHHHHHHHHHHHHH
Q psy16199 239 EQRIKLKANYIISAFGSTLLDNDVLEAIKPVKL--DKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAW 316 (842)
Q Consensus 239 g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~--~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~~A~~~G~~aA~ 316 (842)
++..+++||.|++++|.+ |+++++..+ |.++ ++...-.+ -.|++|+||++||+++ ...+..|+.+|+.||.
T Consensus 393 g~~~~i~~D~V~va~G~~-Pnt~L~~~l-g~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g-~~~~~~A~~eG~~Aa~ 465 (985)
T TIGR01372 393 GAGQRLEADALAVSGGWT-PVVHLFSQR-GGKLAWDAAIAAFL----PGDAVQGCILAGAANG-LFGLAAALADGAAAGA 465 (985)
T ss_pred CceEEEECCEEEEcCCcC-chhHHHHhc-CCCeeeccccCcee----cCCCCCCeEEeeccCC-ccCHHHHHHHHHHHHH
Confidence 344579999999999999 788888876 5443 22110011 1478999999999985 4567889999999999
Q ss_pred HHHHHHHh
Q psy16199 317 HIHKYIQE 324 (842)
Q Consensus 317 ~I~~~L~~ 324 (842)
.|+..+..
T Consensus 466 ~i~~~lg~ 473 (985)
T TIGR01372 466 AAARAAGF 473 (985)
T ss_pred HHHHHcCC
Confidence 99988743
No 108
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.83 E-value=3e-20 Score=210.49 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEeceeecc-----ccceeccccccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcc
Q psy16199 48 RLPFDAVNFEVELVKDLGVKIECERSLST-----RDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTF 122 (842)
Q Consensus 48 ~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~ 122 (842)
....++.-...+++++.||+++++..+.. +.|+.+.+....||.||+||||. |+.+|+| | .+.++++.-.++
T Consensus 56 ~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~-pfi~PiP-G-~~~~~v~~~R~i 132 (793)
T COG1251 56 KTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSY-PFILPIP-G-SDLPGVFVYRTI 132 (793)
T ss_pred ccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcc-ccccCCC-C-CCCCCeeEEecH
Confidence 34446666667899999999999987643 55667777778899999999999 9999999 5 577777654332
Q ss_pred hH--HHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHH----HHH-HH
Q psy16199 123 LP--RVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPE----EVQ-LA 195 (842)
Q Consensus 123 l~--~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~----~~~-~~ 195 (842)
-+ .+... ....++.+|||||..|+|+|..|.+.|-+ |++++..+...-...+. .+. .+
T Consensus 133 ~D~~am~~~--------------ar~~~~avVIGGGLLGlEaA~~L~~~Gm~-~~Vvh~~~~lMerQLD~~ag~lL~~~l 197 (793)
T COG1251 133 DDVEAMLDC--------------ARNKKKAVVIGGGLLGLEAARGLKDLGME-VTVVHIAPTLMERQLDRTAGRLLRRKL 197 (793)
T ss_pred HHHHHHHHH--------------HhccCCcEEEccchhhhHHHHHHHhCCCc-eEEEeecchHHHHhhhhHHHHHHHHHH
Confidence 22 11111 12234489999999999999999999986 99998776422222222 222 34
Q ss_pred HhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCC
Q psy16199 196 WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYG 275 (842)
Q Consensus 196 ~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G 275 (842)
.++|++++++...+++. +++++.++.|.++ ..+++|.|++|+|.+ |+.++.... |+.+++
T Consensus 198 e~~Gi~~~l~~~t~ei~-g~~~~~~vr~~DG---------------~~i~ad~VV~a~GIr-Pn~ela~~a-Glavnr-- 257 (793)
T COG1251 198 EDLGIKVLLEKNTEEIV-GEDKVEGVRFADG---------------TEIPADLVVMAVGIR-PNDELAKEA-GLAVNR-- 257 (793)
T ss_pred Hhhcceeecccchhhhh-cCcceeeEeecCC---------------CcccceeEEEecccc-cccHhHHhc-CcCcCC--
Confidence 57899999998888887 5788888988864 268999999999999 899999887 899997
Q ss_pred CeeeCCCCCCCCCCCeEEeccCCCC----chhHHHHHHHHHHHHHHHHH
Q psy16199 276 YPEVNYTTMATSVPGVFCGGDTANL----SDTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 276 ~i~vd~~~~~Ts~~gVfa~GD~~~~----~~~~~~A~~~G~~aA~~I~~ 320 (842)
.|+|| ++++||+|+|||+|+|+.. ...+..+..|++.+|.++..
T Consensus 258 GIvvn-d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 258 GIVVN-DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCG 305 (793)
T ss_pred Ceeec-ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhcc
Confidence 58888 7999999999999999764 35666777788888877653
No 109
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.79 E-value=9.9e-18 Score=187.78 Aligned_cols=286 Identities=13% Similarity=0.144 Sum_probs=192.7
Q ss_pred eecceeEeecC-CCCccccccCCCCCCCH-HHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCCC
Q psy16199 24 LSKDLPDIERP-VAALPDSSEIPQYRLPF-DAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNA 101 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~iP~~~~~~-~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~~ 101 (842)
.||+|+||||. .+||++++++|..+... .+...+...+...+++|..+..++ ++++++++.. .||+||+|||+. +
T Consensus 62 ~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG-~Dvt~eeL~~-~YDAVIlAtGA~-~ 138 (506)
T PTZ00188 62 ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG-VDLKMEELRN-HYNCVIFCCGAS-E 138 (506)
T ss_pred cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec-CccCHHHHHh-cCCEEEEEcCCC-C
Confidence 49999999996 99999999998776553 555555566777889999999998 8899988866 699999999998 4
Q ss_pred CCCCCCC---------CCcc----ccCceehhcchHHHhhcccCCccCCCCCCCCCC--CCCcEEEEcCChhHHHHHHH-
Q psy16199 102 NVIPIFQ---------GLTE----EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI--LKGTVIVLGAGDTAFDCATS- 165 (842)
Q Consensus 102 ~~~~i~~---------G~~~----~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~--~~~kVvVIGgG~~g~e~A~~- 165 (842)
..+|++. | ++ ..|++++.+|..+++.......|+.++. .+.. ...+++|||.|++|+|+|+.
T Consensus 139 l~ipi~~~~~~~~~~GG-e~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~a-yL~p~~~~~~vvVIG~GNVAlDvARiL 216 (506)
T PTZ00188 139 VSIPIGQQDEDKAVSGG-ETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDN-YLNSFENFTTSIIIGNGNVSLDIARIL 216 (506)
T ss_pred CCCCcccccceeeeccc-cccccccCcEEehheEEEeecCCCCccccccccc-cccccCCCCcEEEECCCchHHHHHHHH
Confidence 4444321 3 33 5699999999888776532111222221 0111 22349999999999999997
Q ss_pred -------------------HHHcCCcEEEEEEeecCccccCCHHHHH---------------------------------
Q psy16199 166 -------------------ALRCGANKVLVVFRKGCTNIRAVPEEVQ--------------------------------- 193 (842)
Q Consensus 166 -------------------l~~~G~~~Vtlv~r~~~~~~~~~~~~~~--------------------------------- 193 (842)
|.+.+.++|+|+.|++.........|+.
T Consensus 217 ~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~ 296 (506)
T PTZ00188 217 IKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMK 296 (506)
T ss_pred ccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhh
Confidence 4555777899999987321111111000
Q ss_pred ------------HHH-----------hcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEE
Q psy16199 194 ------------LAW-----------EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYII 250 (842)
Q Consensus 194 ------------~~~-----------~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi 250 (842)
... .+.+.+++...+++|...++++.+|++..++... |.. ..+|+.++++||+|+
T Consensus 297 ~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~-~~~-~~tg~~~~~~~~lV~ 374 (506)
T PTZ00188 297 KRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVP-MSF-SSFKENKVLVTPLVI 374 (506)
T ss_pred hhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeeccc-Ccc-CCCCeeEEEEcCEEE
Confidence 000 1346677888888887435789999998765432 222 456778899999999
Q ss_pred EccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCch-hHHHHHHHHHHHHHHHHHHHHh
Q psy16199 251 SAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD-TTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 251 ~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~-~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
-|+|++. . . +.|+.+|++ +......-.+..||+|++|.+..||. .+-.-+.++..++..|...+..
T Consensus 375 rsiGY~g-~-p----~~g~pFd~~--~~n~~grv~~~~~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~d~~~ 441 (506)
T PTZ00188 375 FATGFKK-S-N----FAENLYNQS--VQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSKNSTHLVLNFLQK 441 (506)
T ss_pred EcccccC-C-C----CCCCCcccc--CCCCCCcccCCCCCcEEeeecCcCCCceeccCcccHHHHHHHHHHHHhh
Confidence 9999993 2 1 125666633 33221111124799999999988773 3334456677777778777643
No 110
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.78 E-value=5.4e-18 Score=183.71 Aligned_cols=173 Identities=23% Similarity=0.223 Sum_probs=142.4
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.|+.+|+....+++...++++++++.|+|+|++|++||+... + ...++++++++.+++||++|...+
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~-~-----------~~~~~i~~l~~~~~~pvivK~v~s- 182 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGR-R-----------LTWDDLAWLRSQWKGPLILKGILT- 182 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC-C-----------CCHHHHHHHHHhcCCCEEEeecCC-
Confidence 688999975557899999999998899999999999996311 1 345789999999999999996533
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEe
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGI 722 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~ 722 (842)
.+.|+.+.++|+|+|+++|+.+. ....| +.++..+.++++.++ ++|||++
T Consensus 183 ---~~~a~~a~~~G~d~I~v~~~gG~----------------------~~~~g----~~~~~~l~~i~~~~~~~ipvia~ 233 (299)
T cd02809 183 ---PEDALRAVDAGADGIVVSNHGGR----------------------QLDGA----PATIDALPEIVAAVGGRIEVLLD 233 (299)
T ss_pred ---HHHHHHHHHCCCCEEEEcCCCCC----------------------CCCCC----cCHHHHHHHHHHHhcCCCeEEEe
Confidence 35689999999999999885321 00122 445889999988874 5999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhcc----C----chhHHHHHHHHHHHHHhcCC-CccccC
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQ----D----FTVVDDYITGLQTLLYLKST-QLKGWD 778 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~----g----p~~~~~i~~~l~~~m~~~g~-~i~~~~ 778 (842)
|||+++.|+.++|++||++|||+|++++. | ..+++.++++|+.+|...|+ +++|+.
T Consensus 234 GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 234 GGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 99999999999999999999999999953 1 35889999999999999999 998874
No 111
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.75 E-value=3.4e-18 Score=206.34 Aligned_cols=314 Identities=17% Similarity=0.219 Sum_probs=215.6
Q ss_pred eeeccccccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeec-cCCCcccccCcceecccccccccCC
Q psy16199 339 FMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFS-LQKDMVTNVSPRIVKGTTSRHLYGP 417 (842)
Q Consensus 339 ~~t~i~~~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~-~~~~~~~~~~p~~~~~~~~~~~~~~ 417 (842)
||+.-.. -...++|.++++|+.||++|+|+.++++..++.+|..++..||++ +|..++ ++|||...++
T Consensus 35 ~~~~~~~--~~~~~~~~~~~~~~gpaagp~tql~qn~~~~~~~g~r~~elktvq~~d~~~~--~~pci~~~de------- 103 (1019)
T PRK09853 35 FYKPDKG--KTISVFGETLATPIGPAAGPHTQLAQNIVASYLTGGRFIELKTVQILDGLEL--EKPCIDAEDE------- 103 (1019)
T ss_pred ceeCCCC--CeeehhcccCCCCCCCCCCchHHHHHHHHHHHHccCceEEEEEEEeeccccc--CCCccCcccc-------
Confidence 4543332 344678999999999999999999999999999999999999999 555554 5999988766
Q ss_pred CCcceeeeEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCc
Q psy16199 418 EQGSFLNIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQ 497 (842)
Q Consensus 418 ~~~~~~n~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~ 497 (842)
.||+||++|+++.+-+ .+ +++.+-+.+.+.+-+||.+
T Consensus 104 ----~~n~ews~e~~~~~a~---~e-------------y~ka~~~~~~~~~~~~~~~----------------------- 140 (1019)
T PRK09853 104 ----CYNTEWSTELTLPKAY---DE-------------YLKAWFALHLLEKEFQLSD----------------------- 140 (1019)
T ss_pred ----eeeeecccccchHHHH---HH-------------HHHHHHHHHHHHHHhCCCC-----------------------
Confidence 8999999999999866 33 3554432222333333321
Q ss_pred cccccccCccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHh
Q psy16199 498 AVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKD 577 (842)
Q Consensus 498 ~~g~vt~~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e 577 (842)
+.+-|-+.-. +|||..|+..... .-+|-+++-.++.+
T Consensus 141 -------------~~~~f~~n~s----------vgy~l~gi~~~~~--------------------~~~i~~~~~~~~~~ 177 (1019)
T PRK09853 141 -------------SGKSFIFNMS----------VGYDLEGIKSPKM--------------------QQFIDGMMDASDTP 177 (1019)
T ss_pred -------------CCCceEEEee----------cccCccccCchhH--------------------HHHHHHhhhcccCh
Confidence 1000111111 7888888765444 33455555445566
Q ss_pred HHHHHHHHHhhc-----CcCEEEE-ecc---CC--CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcH
Q psy16199 578 DWLELSKKTEKA-----GADALEL-NLS---CP--HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNI 646 (842)
Q Consensus 578 ~~~~~a~~~~~a-----gaD~iel-N~s---cP--~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~ 646 (842)
-|.++-+.+.+. ..+.-.| .++ |. .-.+.+ |+.|+.++.|.+.+-+.-++..+||+.|++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~st~h------gcp~~eie~i~~~~~~~k~~~~~~k~nptllg~ 251 (1019)
T PRK09853 178 IFAECRETLNKLLDDFAFLAREGLERIPPSICPSVTLSTMH------GCPPHEIEAIARYLLEEKGLNTFVKLNPTLLGY 251 (1019)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcCChhhcCceeehhcc------CCCHHHHHHHHHHHHhccCCceEEeeCcccccH
Confidence 677777766431 1111111 121 22 112233 489999999999999999999999999986554
Q ss_pred HHHHHHHHHCCCC------------------------------------EEEEecCCCccccCCCCCCCCCcccCCCccc
Q psy16199 647 TDIAKAAYEGKAD------------------------------------GVSAINTVSGLMSLSADGNPWPAVGTKKLTT 690 (842)
Q Consensus 647 ~~~a~~~~~~G~d------------------------------------~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~ 690 (842)
...-+.+.+.|.| ||.++||++ +++....+|. .
T Consensus 252 ~~~r~~~d~~g~~~~~~~~~~f~~dl~~~~a~~m~~~l~~~~~~~~~~fgvk~tnt~~----~~~~~~~lp~-------~ 320 (1019)
T PRK09853 252 ERVREILDKMGFDYIGLKEEHFDHDLQYTDAVEMLERLMALAKEKGLGFGVKLTNTLP----VINNKGELPG-------E 320 (1019)
T ss_pred HHHHHHHHhcCCceEecchhhcccccchhHHHHHHHHHHHHHHHcCceeeEEEecccc----eeecCCCCCc-------c
Confidence 4444445555544 889999976 3344333331 2
Q ss_pred cCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC-chhHHHHHHHHHHHH
Q psy16199 691 YGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD-FTVVDDYITGLQTLL 767 (842)
Q Consensus 691 ~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g-p~~~~~i~~~l~~~m 767 (842)
--.+||++++|+++.+...+.+++. ++||.++|| .+.-.+.+.+..|.+.|-|+|.+|..+ +.-+.+|.+.|+..+
T Consensus 321 ~mymsg~~l~pl~i~~a~~l~~~f~g~l~is~~~g-~~~~~~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~~~ 398 (1019)
T PRK09853 321 EMYMSGRALFPLSINLAAKLSREFDGKLPISYSGG-ADQFNIRDIFDTGIRPITMATTLLKPGGYLRLTQCARELEGSD 398 (1019)
T ss_pred cccccCCcccceeHHHHHhhHHhhCCCCceeEEec-cceeehhhccCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 2358999999999999999999995 499999999 466677788899999999999999654 445555555555533
No 112
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.74 E-value=4.6e-18 Score=206.32 Aligned_cols=311 Identities=18% Similarity=0.212 Sum_probs=216.0
Q ss_pred eeeccccccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeec-cCCCcccccCcceecccccccccCC
Q psy16199 339 FMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFS-LQKDMVTNVSPRIVKGTTSRHLYGP 417 (842)
Q Consensus 339 ~~t~i~~~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~-~~~~~~~~~~p~~~~~~~~~~~~~~ 417 (842)
||+.-. .-...++|.++++|+.||++|+|+.++++..++.+|..++..||++ +|..++ ++|||...++
T Consensus 34 ~~~~~~--~~~~~~~~~~~~~~~gpaagp~~ql~qn~~~~~~~g~r~~elktvq~~~~~~~--~~pci~~~~~------- 102 (1012)
T TIGR03315 34 FYRADP--GKYISLFGEKLETPVGPAAGPHTQLAQNIVASYLTGGRFFELKTVQVLDGLDL--PKPCIDAADE------- 102 (1012)
T ss_pred ceeCCC--CCeeehhcccCCCCCCCCCCchHHHHHHHHHHHHcccceEEeeeEEeeccccc--CCCccCcccc-------
Confidence 454333 3345689999999999999999999999999999999999999999 555554 6999988766
Q ss_pred CCcceeeeEeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccC--CCCCCCCCChhHHHHhhhhhh
Q psy16199 418 EQGSFLNIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQN--GLPKRQINTPVETILSVKDVI 495 (842)
Q Consensus 418 ~~~~~~n~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--g~dk~~~~~~~~~~~~l~~~~ 495 (842)
.||+||++|+++++-+ .+ +++.+-+.+.+.+-+||.. ||-.| ||
T Consensus 103 ----~~n~ews~e~~~~~a~---~e-------------y~k~~~~~~~~~~~~~~~~~~~~~~n---~s----------- 148 (1012)
T TIGR03315 103 ----CYNVEWSTELTVPEAY---DE-------------YVKAWFLLHLLEKEFELGDPRGFMFN---MS----------- 148 (1012)
T ss_pred ----eeeeecccccchHHHH---HH-------------HHHHHHHHHHHHHHhCCCCccceEEE---ee-----------
Confidence 8999999999999876 33 3444432222333333322 11111 21
Q ss_pred CccccccccCccCCCcceeEeeccCCccccCCccccCCCccchhhhhcCccccccccccccccccccccceEEEeccCCC
Q psy16199 496 GQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYN 575 (842)
Q Consensus 496 G~~~g~vt~~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~ 575 (842)
+|||..|+..... .-+|-+++-.++
T Consensus 149 -----------------------------------vgy~l~gi~~~~~--------------------~~~~~~~~~~~~ 173 (1012)
T TIGR03315 149 -----------------------------------VGYDLAGIKSPKV--------------------DRYIEEMQDASG 173 (1012)
T ss_pred -----------------------------------cccCccccCcccH--------------------HHHHHHhhhccc
Confidence 7888888765443 334555554455
Q ss_pred HhHHHHHHHHHhhc----------CcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh
Q psy16199 576 KDDWLELSKKTEKA----------GADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT 644 (842)
Q Consensus 576 ~e~~~~~a~~~~~a----------gaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~ 644 (842)
.+-|.++-+.+.+. +.+.|--+++.- .-.+.+ |+.|+.++.|.+.+-+.-++..+||+.|++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~st~h------gcp~~eie~i~~~~~~~k~~~~~~k~nptll 247 (1012)
T TIGR03315 174 TPIFAECRATLKKYIDYFKKVDDEFIDAISPKVCHSVTLSTMH------GCPPDEIEAICRYLLEEKGLHTFVKLNPTLL 247 (1012)
T ss_pred ChHHHHHHHHHHHHHHHhhhcCHhhhhcCChhhcCceeehhcc------CCCHHHHHHHHHHHHhccCCceEEeeCcccc
Confidence 66677776666431 111222222111 112223 4889999999999999999999999999865
Q ss_pred cHHHHHHHHHHCCCC------------------------------------EEEEecCCCccccCCCCCCCCCcccCCCc
Q psy16199 645 NITDIAKAAYEGKAD------------------------------------GVSAINTVSGLMSLSADGNPWPAVGTKKL 688 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d------------------------------------~i~v~nt~~~~~~~~~~~~~~p~~~~~~~ 688 (842)
.....-+.+.+.|.| ||.++||++ +++....+|.
T Consensus 248 g~~~~r~~~~~~g~~~~~~~~~~f~~dl~~~~~~~~~~~l~~~~~~~~~~fgvk~~nt~~----~~~~~~~~p~------ 317 (1012)
T TIGR03315 248 GYKFVRDTMDEMGFDYIVLKEESFSHDLQYEDAVAMLQRLQLLAKEKGLGFGVKLTNTLP----VTIAKGELPG------ 317 (1012)
T ss_pred cHHHHHHHHHhcCCceEecchhhcccccchhHHHHHHHHHHHHHHHcCCeeeEEEecccc----eeecCCCCCc------
Confidence 444444444555544 789999976 3333333331
Q ss_pred cccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC-chhHHHHHHHHHHH
Q psy16199 689 TTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD-FTVVDDYITGLQTL 766 (842)
Q Consensus 689 ~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g-p~~~~~i~~~l~~~ 766 (842)
.--.+||++++|+++.+...+.+++. ++||.++|| .+.-.+.+.+..|.+.|-|+|.+|..+ +.-+.+|.+.|+..
T Consensus 318 -~~my~sg~~l~~~~~~~~~~l~~~f~g~~~i~~~~g-~~~~n~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~~ 395 (1012)
T TIGR03315 318 -EEMYMSGRALFPLSINLAAKLSREFDGKLQISYSGG-ADIFNIKEIFDTGIWPITMATTLLKPGGYLRLNQCANELETS 395 (1012)
T ss_pred -ccccccCCccccchHHHHHhhHHhhCCCCceEEEec-cccccHHhhcCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 22458999999999999999999994 499999999 466677788899999999999999655 44556666666654
Q ss_pred H
Q psy16199 767 L 767 (842)
Q Consensus 767 m 767 (842)
+
T Consensus 396 ~ 396 (1012)
T TIGR03315 396 E 396 (1012)
T ss_pred h
Confidence 4
No 113
>KOG4716|consensus
Probab=99.73 E-value=1.1e-17 Score=172.51 Aligned_cols=196 Identities=24% Similarity=0.290 Sum_probs=150.7
Q ss_pred cCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHH
Q psy16199 87 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 166 (842)
Q Consensus 87 ~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l 166 (842)
+.++.+|||||.+ |+-|.|| | ..+.-++|.|.+. ++..+||.+|||+|++|+|||..|
T Consensus 160 ~ta~~fvIatG~R-PrYp~Ip-G--~~Ey~ITSDDlFs------------------l~~~PGkTLvVGa~YVaLECAgFL 217 (503)
T KOG4716|consen 160 LTAENFVIATGLR-PRYPDIP-G--AKEYGITSDDLFS------------------LPYEPGKTLVVGAGYVALECAGFL 217 (503)
T ss_pred eecceEEEEecCC-CCCCCCC-C--ceeeeeccccccc------------------ccCCCCceEEEccceeeeehhhhH
Confidence 4689999999999 9999999 5 3345567766553 255689999999999999999999
Q ss_pred HHcCCcEEEEEEeecCccccCCHHHHH-----HHHhcCcEEecCCCceEEEc-cCCcEEEEEEEeecccCCCCeeccCCc
Q psy16199 167 LRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQ 240 (842)
Q Consensus 167 ~~~G~~~Vtlv~r~~~~~~~~~~~~~~-----~~~~~gV~i~~~~~v~~v~~-~~~~v~~V~~~~~~~~~~G~~~~~~g~ 240 (842)
.-.|.. ||+..|+- .++.++..+. .+.+.||+|.....+++|+. +++++. |...+++ +++
T Consensus 218 ~gfg~~-vtVmVRSI--~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~----------t~~ 283 (503)
T KOG4716|consen 218 KGFGYD-VTVMVRSI--LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTN----------TGE 283 (503)
T ss_pred hhcCCC-cEEEEEEe--ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeeccc----------ccc
Confidence 999986 99999984 6677766543 35678999998888888864 445533 4444432 334
Q ss_pred eEEEECCEEEEccccCcCChhHHhhcCCcccC-CCCCeeeCCCCCCCCCCCeEEeccCCCC-chhHHHHHHHHHHHHHHH
Q psy16199 241 RIKLKANYIISAFGSTLLDNDVLEAIKPVKLD-KYGYPEVNYTTMATSVPGVFCGGDTANL-SDTTVESVNDGKTAAWHI 318 (842)
Q Consensus 241 ~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~-~~G~i~vd~~~~~Ts~~gVfa~GD~~~~-~~~~~~A~~~G~~aA~~I 318 (842)
+.+-+.|.|+||+|+.+...++--...|+.+| +.|.|.+| +..+|++|+|||+||+..+ |.....|+..||..|+.+
T Consensus 284 ~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rl 362 (503)
T KOG4716|consen 284 EGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRL 362 (503)
T ss_pred cccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhchHHHHHH
Confidence 44667999999999995444443333378875 46889999 6789999999999999764 678889999999999887
Q ss_pred H
Q psy16199 319 H 319 (842)
Q Consensus 319 ~ 319 (842)
.
T Consensus 363 f 363 (503)
T KOG4716|consen 363 F 363 (503)
T ss_pred h
Confidence 5
No 114
>KOG1800|consensus
Probab=99.71 E-value=1.6e-16 Score=167.14 Aligned_cols=282 Identities=18% Similarity=0.220 Sum_probs=190.5
Q ss_pred eeecceeEeecC-CCCccccccC-CCCCCCHHHHHHHHHHHHhcCcEEEeceeeccccceeccccccCCCEEEEccCCCC
Q psy16199 23 CLSKDLPDIERP-VAALPDSSEI-PQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100 (842)
Q Consensus 23 ~~g~~V~l~Ek~-~~GG~~~~~i-P~~~~~~~~v~~~~~~l~~~gV~i~~~~~v~~~~v~~~~~~~~~yd~lVlAtGs~~ 100 (842)
....+|+|||+. .+.|+.+||+ |+...-+.+.+.+.+.++.....|..|..++ +++++.++... ||+||||+|+..
T Consensus 43 ~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG-~dvsl~eL~~~-ydavvLaYGa~~ 120 (468)
T KOG1800|consen 43 HPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG-RDVSLKELTDN-YDAVVLAYGADG 120 (468)
T ss_pred CCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec-ccccHHHHhhc-ccEEEEEecCCC
Confidence 456889999996 9999999997 5555555777888888888889999999999 89999887655 999999999999
Q ss_pred CCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHHHHHc----------
Q psy16199 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSALRC---------- 169 (842)
Q Consensus 101 ~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~~---------- 169 (842)
+|.+.|| | ++..||+++.+|..+.+..... . +..+.+.++ |+|||-|++++|+|+.|...
T Consensus 121 dR~L~IP-G-e~l~~V~Sarefv~Wyng~P~~------~-~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi 191 (468)
T KOG1800|consen 121 DRRLDIP-G-EELSGVISAREFVGWYNGLPEN------Q-NLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDI 191 (468)
T ss_pred CcccCCC-C-cccccceehhhhhhhccCCCcc------c-ccCcccccceEEEEccCchhhhhhhhhhCCccccccccCC
Confidence 9999999 5 5789999999998887643110 0 011333455 99999999999999887632
Q ss_pred -----------CCcEEEEEEeecCccccCCHHHH------------------------------------------HHHH
Q psy16199 170 -----------GANKVLVVFRKGCTNIRAVPEEV------------------------------------------QLAW 196 (842)
Q Consensus 170 -----------G~~~Vtlv~r~~~~~~~~~~~~~------------------------------------------~~~~ 196 (842)
..++|+++.|++.......-.++ ..+.
T Consensus 192 ~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~ 271 (468)
T KOG1800|consen 192 PKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAR 271 (468)
T ss_pred cHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHH
Confidence 23579999988732111111111 1111
Q ss_pred hc---------C---cEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCCh----
Q psy16199 197 EE---------K---CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN---- 260 (842)
Q Consensus 197 ~~---------g---V~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~---- 260 (842)
++ + ..+.+...+.+|..+.+++.++.|..+... +.....+|+.++++|++++.++|+..-..
T Consensus 272 e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~--~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~gi 349 (468)
T KOG1800|consen 272 EHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILE--GTQAVPTGAFETLPCGLLIRSIGYKSVPVDSGI 349 (468)
T ss_pred hhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeeh--hhcccccCceEeeccceeEeeeeecccccCCCC
Confidence 10 1 112233344555544444666666554332 11234578889999999999999972110
Q ss_pred hHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCc-hhHHHHHHHHHHHHHHHHHHHH
Q psy16199 261 DVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 261 ~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~-~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
.|-.. .|+..+.+|++.+- . -.|+||+.|.+..|| ..+...+.++-.+|..|.+.+.
T Consensus 350 pFd~~-kgvv~n~~GrV~~s----~-~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 350 PFDDK-KGVVPNVNGRVLVS----G-CSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred Ccccc-cCcccCCCceEEee----c-cCCceEEEeeeccCCcceeeehhhhHHHHHHHHHHHHH
Confidence 11111 13333334544421 1 368999999998876 5667788888888888888775
No 115
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.68 E-value=1.1e-15 Score=166.57 Aligned_cols=185 Identities=17% Similarity=0.205 Sum_probs=142.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCC--cc--------------------cCC-----C
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGM--GL--------------------ACG-----Q 615 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~--G~--------------------~~~-----~ 615 (842)
.+...|+....+.+-..++.++++++|+.+|-+.+.+| ....+++. |. ... .
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 46788887666888899999999999999999998776 22111110 00 000 0
Q ss_pred CHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCC
Q psy16199 616 DPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695 (842)
Q Consensus 616 ~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~s 695 (842)
++...++.++++++.+++||++|... ..+.|+.+.++|+|+|+++|.-+ + ... +
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivKgv~----~~~dA~~a~~~G~d~I~vsnhGG-r------------------~ld---~ 258 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVKGIQ----SPEDADVAINAGADGIWVSNHGG-R------------------QLD---G 258 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEecCC----CHHHHHHHHHcCCCEEEEeCCCC-c------------------cCC---C
Confidence 12345688899999999999999532 23668999999999999998632 1 001 1
Q ss_pred CCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC---------chhHHHHHHHHHH
Q psy16199 696 GNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD---------FTVVDDYITGLQT 765 (842)
Q Consensus 696 G~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g---------p~~~~~i~~~l~~ 765 (842)
-|.+++.+.++++.+. ++|||++|||+++.|+.++|++||++|++||++++ + ..+++.+.++|+.
T Consensus 259 ----~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~-~la~~G~~gv~~~l~~l~~El~~ 333 (351)
T cd04737 259 ----GPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY-GLALGGAQGVASVLEHLNKELKI 333 (351)
T ss_pred ----CchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH-HHhhchHHHHHHHHHHHHHHHHH
Confidence 2445788899988874 59999999999999999999999999999999995 4 3788999999999
Q ss_pred HHHhcCC-CccccCC
Q psy16199 766 LLYLKST-QLKGWDG 779 (842)
Q Consensus 766 ~m~~~g~-~i~~~~~ 779 (842)
.|.+.|+ +++|+..
T Consensus 334 ~m~l~G~~~i~el~~ 348 (351)
T cd04737 334 VMQLAGTRTIEDVKR 348 (351)
T ss_pred HHHHHCCCCHHHhCC
Confidence 9999999 9998864
No 116
>KOG2495|consensus
Probab=99.67 E-value=3.4e-16 Score=167.41 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=139.3
Q ss_pred ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccC----CccCCC---CCCCCCCCCCc---EEEEcC
Q psy16199 86 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKK----GLCGGC---KKESLPILKGT---VIVLGA 155 (842)
Q Consensus 86 ~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~----~~c~~c---~~~~~~~~~~k---VvVIGg 155 (842)
.+.||+||+|+|+. +..+.+| |+.+... ||+.+.++.+. ..|... .+.. .+.+++ +|||||
T Consensus 156 ~i~YDyLViA~GA~-~~TFgip-GV~e~~~------FLKEv~dAqeIR~~~~~~le~a~~~~l~-~eerkRlLh~VVVGG 226 (491)
T KOG2495|consen 156 VIGYDYLVIAVGAE-PNTFGIP-GVEENAH------FLKEVEDAQEIRRKVIDNLEKAELPGLS-DEERKRLLHFVVVGG 226 (491)
T ss_pred eecccEEEEeccCC-CCCCCCC-chhhchh------hhhhhhHHHHHHHHHHHHHHHhhcCCCC-hHHhhheEEEEEECC
Confidence 45799999999999 8888888 6544322 23222222110 001000 0000 112233 999999
Q ss_pred ChhHHHHHHHHHHcC-----------C--cEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCCc
Q psy16199 156 GDTAFDCATSALRCG-----------A--NKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK 217 (842)
Q Consensus 156 G~~g~e~A~~l~~~G-----------~--~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~~ 217 (842)
|++|+|+|.+|+..= . -+||+++..+. .++.++.-+ +.+.+.+|.+..++.++.+.. ..
T Consensus 227 GPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~-iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~ 303 (491)
T KOG2495|consen 227 GPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH-ILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KT 303 (491)
T ss_pred CCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh-HHHHHHHHHHHHHHHHhhhccceeecccEEEeecC--cE
Confidence 999999999987541 1 16899988873 555555433 234567999999999998852 22
Q ss_pred EEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCC--CeeeCCCCCCCCCCCeEEec
Q psy16199 218 IAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYG--YPEVNYTTMATSVPGVFCGG 295 (842)
Q Consensus 218 v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G--~i~vd~~~~~Ts~~gVfa~G 295 (842)
++.... +|+..+|+.-+++|++|..| . .+.+.+ .-.+++.| .+.+|+.....+.++|||+|
T Consensus 304 ---I~~~~~-----------~g~~~~iPYG~lVWatG~~~-r-p~~k~l-m~~i~e~~rr~L~vDE~LrV~G~~nvfAiG 366 (491)
T KOG2495|consen 304 ---IHAKTK-----------DGEIEEIPYGLLVWATGNGP-R-PVIKDL-MKQIDEQGRRGLAVDEWLRVKGVKNVFAIG 366 (491)
T ss_pred ---EEEEcC-----------CCceeeecceEEEecCCCCC-c-hhhhhH-hhcCCccCceeeeeeceeeccCcCceEEec
Confidence 333321 35667899999999999883 2 233333 23445555 78999544556999999999
Q ss_pred cCCCC---chhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 296 DTANL---SDTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 296 D~~~~---~~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
||+.. +.+++.|.+||..+|.++....+.
T Consensus 367 Dca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~ 398 (491)
T KOG2495|consen 367 DCADQRGLKPTAQVAEQQGAYLAKNFNKMGKG 398 (491)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 99832 468999999999999999876554
No 117
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.67 E-value=6.6e-16 Score=169.08 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=135.6
Q ss_pred HhHHHHHHHHHhhcCcCEEEEecc---------CCCCC-CCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC----
Q psy16199 576 KDDWLELSKKTEKAGADALELNLS---------CPHGM-GERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP---- 641 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~s---------cP~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p---- 641 (842)
.++|.++|+++.++|+|+||||.+ ||.+. ....||+++..+.+++.+++++||+.++.||.+|+++
T Consensus 141 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~ 220 (337)
T PRK13523 141 VLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH 220 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC
Confidence 578999999999999999999987 89443 3445888999999999999999999999999999986
Q ss_pred ----ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCC
Q psy16199 642 ----NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 642 ----~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~i 717 (842)
+.++..++++.+++.|+|.|.++...... + ....+.|. -+.+.+++++.+ ++
T Consensus 221 ~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~----------~--------~~~~~~~~-----~~~~~~~ik~~~-~i 276 (337)
T PRK13523 221 PGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP----------A--------RIDVYPGY-----QVPFAEHIREHA-NI 276 (337)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC----------C--------CCCCCccc-----cHHHHHHHHhhc-CC
Confidence 34578899999999999999997642110 0 00111221 256778888888 79
Q ss_pred cEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHHHH
Q psy16199 718 PILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGLQT 765 (842)
Q Consensus 718 pIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l~~ 765 (842)
||+++|+|.|++++.++|..| ||+|+++|+++. +|++++++.+++..
T Consensus 277 pVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia-dP~~~~k~~~~~~~ 324 (337)
T PRK13523 277 ATGAVGLITSGAQAEEILQNNRADLIFIGRELLR-NPYFPRIAAKELGF 324 (337)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh-CccHHHHHHHHcCC
Confidence 999999999999999999976 999999999995 59999999888763
No 118
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.67 E-value=1.2e-15 Score=168.38 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=134.7
Q ss_pred HhHHHHHHHHHhhcCcCEEEEecc---------CCCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNLS---------CPHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~s---------cP~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~- 642 (842)
.++|.++|+++.++|+|+||||.+ ||.+. ....||+++..+.+++.+++++|++.+ ++||.+|++++
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 578999999999999999999986 78433 344589999999999999999999998 78999999864
Q ss_pred -------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 643 -------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 643 -------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
..+..++++.+++.|+|.|.+++......... .+ ++....+..+++++.+++.+
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~----------------~~--~~~~~~~~~~~~~~~ir~~~- 280 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI----------------IP--PPYVPEGYFLELAEKIKKAV- 280 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc----------------cC--CCCCCcchhHHHHHHHHHHC-
Confidence 34678999999999999999987643211000 00 01111344578889999998
Q ss_pred CCcEEEecCcCCHHHHHHHHHh-CCCEEEEehhhhccCchhHHHHHH
Q psy16199 716 NFPILGIGGIDSADVALQFIQA-GAHAVQICSAVQNQDFTVVDDYIT 761 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~-GA~~Vqv~ta~l~~gp~~~~~i~~ 761 (842)
++||+++|||.|++++.++|+. |||+|+++|+++. +|++++++.+
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la-dP~l~~k~~~ 326 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA-DPDLPNKARE 326 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh-CccHHHHHhc
Confidence 7999999999999999999997 7999999999995 5999998865
No 119
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.66 E-value=1.9e-15 Score=165.07 Aligned_cols=184 Identities=22% Similarity=0.256 Sum_probs=138.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCCCCCccc------------------------C--CCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGERGMGLA------------------------C--GQD 616 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~~~~G~~------------------------~--~~~ 616 (842)
.|+..|+....+.+...++.++++++|+++|-+++..|.. ..+++.-.. + ..+
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 4778888766678889999999999999999999998822 111111000 0 123
Q ss_pred HHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC
Q psy16199 617 PEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696 (842)
Q Consensus 617 ~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG 696 (842)
+...++.++++++.+++||+||-..+ .+.|+.+.++|+|+|+++|+.+.. ++ +
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivKgv~~----~~dA~~a~~~G~d~I~vsnhgG~~--~d---------------------~ 250 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLKGVQT----VEDAVLAAEYGVDGIVLSNHGGRQ--LD---------------------T 250 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCC----HHHHHHHHHcCCCEEEEECCCccc--CC---------------------C
Confidence 44667889999999999999996532 566899999999999999964211 11 0
Q ss_pred CccccchHHHHHHHHh---hC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCch---------hHHHHHHHH
Q psy16199 697 NATRPMGLKAVSSIAK---MF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFT---------VVDDYITGL 763 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~---~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~---------~~~~i~~~l 763 (842)
.+.++..+.++++ .+ .++|||++|||+++.|+.++|++||++|+|+|++++ ++. ++..+.++|
T Consensus 251 ---~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~-~l~~~G~~gv~~~l~~l~~EL 326 (344)
T cd02922 251 ---APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY-ALSAYGEEGVEKAIQILKDEI 326 (344)
T ss_pred ---CCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH-HHhhccHHHHHHHHHHHHHHH
Confidence 0112333444443 33 359999999999999999999999999999999995 454 789999999
Q ss_pred HHHHHhcCC-CccccC
Q psy16199 764 QTLLYLKST-QLKGWD 778 (842)
Q Consensus 764 ~~~m~~~g~-~i~~~~ 778 (842)
+.+|.+.|+ +++|+.
T Consensus 327 ~~~m~l~G~~~i~~l~ 342 (344)
T cd02922 327 ETTMRLLGVTSLDQLG 342 (344)
T ss_pred HHHHHHhCCCCHHHhC
Confidence 999999999 998875
No 120
>PLN02535 glycolate oxidase
Probab=99.65 E-value=7.6e-15 Score=160.17 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=143.6
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccC-----------------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLAC----------------------------- 613 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~----------------------------- 613 (842)
.+...|+....+.+...++.++++++|+.+|-+.+.+| ...++++.-..+
T Consensus 124 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (364)
T PLN02535 124 AVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFAS 203 (364)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHH
Confidence 57888887666788899999999999999999999887 333333211100
Q ss_pred -CCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccC
Q psy16199 614 -GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYG 692 (842)
Q Consensus 614 -~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~g 692 (842)
..++...++-++++++.+++||+||-.-+. +-|+.+.++|+|+|+++|+-+.. .+
T Consensus 204 ~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~----~dA~~a~~~GvD~I~vsn~GGr~--------------------~d 259 (364)
T PLN02535 204 ETFDASLSWKDIEWLRSITNLPILIKGVLTR----EDAIKAVEVGVAGIIVSNHGARQ--------------------LD 259 (364)
T ss_pred hccCCCCCHHHHHHHHhccCCCEEEecCCCH----HHHHHHHhcCCCEEEEeCCCcCC--------------------CC
Confidence 013344567889999999999999965332 33889999999999999963210 00
Q ss_pred CCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCc---------hhHHHHHHH
Q psy16199 693 GVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDF---------TVVDDYITG 762 (842)
Q Consensus 693 G~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp---------~~~~~i~~~ 762 (842)
. -|.++..+.++++.+. ++|||+.|||+++.|+.++|.+||++|+|||++++ +. ..++.+.++
T Consensus 260 -~-----~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~-~l~~~g~~gv~~~l~~l~~e 332 (364)
T PLN02535 260 -Y-----SPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY-GLAAKGEDGVRKVIEMLKDE 332 (364)
T ss_pred -C-----ChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh-hhhhccHHHHHHHHHHHHHH
Confidence 0 2455788888888763 59999999999999999999999999999999995 33 378889999
Q ss_pred HHHHHHhcCC-CccccCC
Q psy16199 763 LQTLLYLKST-QLKGWDG 779 (842)
Q Consensus 763 l~~~m~~~g~-~i~~~~~ 779 (842)
|+..|...|+ +++|+..
T Consensus 333 l~~~m~l~G~~~i~el~~ 350 (364)
T PLN02535 333 LEITMALSGCPSVKDITR 350 (364)
T ss_pred HHHHHHHhCCCCHHHhhh
Confidence 9999999999 9988864
No 121
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.64 E-value=1.4e-14 Score=158.17 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=143.4
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCC---------------------cccC-----CCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGM---------------------GLAC-----GQD 616 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~---------------------G~~~-----~~~ 616 (842)
.|...|+....+.+-..++.++++++|+.+|-|.+.+| ...++++. +..+ ..+
T Consensus 133 ~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (367)
T TIGR02708 133 TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAK 212 (367)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccC
Confidence 47788887656677779999999999999999998877 22221110 0000 012
Q ss_pred HHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC
Q psy16199 617 PEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696 (842)
Q Consensus 617 ~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG 696 (842)
+..-++.++++++.+++||+||-... .+.|+.+.++|+|+|+++|.-+ + ...+
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivKGv~~----~eda~~a~~~Gvd~I~VS~HGG-------------------r---q~~~- 265 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVKGPQC----PEDADRALKAGASGIWVTNHGG-------------------R---QLDG- 265 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCC----HHHHHHHHHcCcCEEEECCcCc-------------------c---CCCC-
Confidence 33445789999999999999995432 5779999999999999988521 0 1112
Q ss_pred CccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc----C----chhHHHHHHHHHHHH
Q psy16199 697 NATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ----D----FTVVDDYITGLQTLL 767 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~----g----p~~~~~i~~~l~~~m 767 (842)
.|.+++.+.++++.+. ++|||++|||+++.|+.++|++||++|+|++++++. | -.+++.++++|+..|
T Consensus 266 ---~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M 342 (367)
T TIGR02708 266 ---GPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVM 342 (367)
T ss_pred ---CCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2445888899988773 599999999999999999999999999999999852 3 366788899999999
Q ss_pred HhcCC-CccccCCC
Q psy16199 768 YLKST-QLKGWDGQ 780 (842)
Q Consensus 768 ~~~g~-~i~~~~~~ 780 (842)
.+.|+ +++|+...
T Consensus 343 ~l~G~~~i~eL~~~ 356 (367)
T TIGR02708 343 QLTGTQTIEDVKGF 356 (367)
T ss_pred HHhCCCCHHHhCcc
Confidence 99999 99999754
No 122
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.64 E-value=3.4e-15 Score=164.78 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=130.1
Q ss_pred HhHHHHHHHHHhhcCcCEEEEeccC---------CCC-CCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNLSC---------PHG-MGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~sc---------P~~-~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~- 642 (842)
.++|.++|+++.++|+|+||||.+| |.. .....||+++..+++++.+++++||+.+ ++||.+|+++.
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 5789999999999999999999765 733 3445689999999999999999999998 79999999852
Q ss_pred -------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 643 -------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 643 -------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
.++..++++.+++.|+|.|.++...... . . ..... ....+...+++++.+
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~-----~-------------~--~~~~~--~~~~~~~~~~ir~~~- 289 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSP-----A-------------Q--KIPVG--PGYQVPFAERIRQEA- 289 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc-----c-------------c--ccCCC--ccccHHHHHHHHhhC-
Confidence 4467899999999999999985321100 0 0 00000 112357778899988
Q ss_pred CCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHH
Q psy16199 716 NFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYIT 761 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~ 761 (842)
++||+++|||.+++++.++|+.| ||+|+++|+++. +|+++.++.+
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~-dP~~~~k~~~ 335 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR-NPYWPLHAAA 335 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh-CccHHHHHhh
Confidence 79999999999999999999988 999999999995 5999988764
No 123
>KOG2333|consensus
Probab=99.63 E-value=5.3e-15 Score=158.67 Aligned_cols=171 Identities=16% Similarity=0.170 Sum_probs=141.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhh-cCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEec
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEK-AGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLT 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~-agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~ 640 (842)
..+-+|+ +|..++....+|+.+.+ .-+|+|+||++|| ...-..|.|++|+.+|..+.++++......+ +||.||+.
T Consensus 320 diFGVQl-ag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiR 398 (614)
T KOG2333|consen 320 DIFGVQL-AGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIR 398 (614)
T ss_pred cceeeEe-ccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEe
Confidence 4677788 57789989999987765 4599999999999 4455677799999999999999999998875 59999996
Q ss_pred CChh----cHHHHHHHHH-HCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 641 PNIT----NITDIAKAAY-EGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 641 p~~~----~~~~~a~~~~-~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
-.+- -+.++...+. +.|+++|+++ +|+...-|+-.+. |++|+++++...
T Consensus 399 TG~keg~~~a~~Li~~i~newg~savTlH----------------------GRSRqQRYTK~An----WdYi~e~a~~ak 452 (614)
T KOG2333|consen 399 TGTKEGHPVAHELIPRIVNEWGASAVTLH----------------------GRSRQQRYTKSAN----WDYIEECADKAK 452 (614)
T ss_pred cccccCchhHHHHHHHHhhccCcceEEec----------------------CchhhhhhhcccC----hHHHHHHHHhcc
Confidence 5432 3556666666 9999999994 4555566775555 999999998875
Q ss_pred C-CcEEEecCcCCHHHHHHHHHhC--CCEEEEehhhhccCchhHHHHHHH
Q psy16199 716 N-FPILGIGGIDSADVALQFIQAG--AHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 716 ~-ipIi~~GGI~t~~da~~~l~~G--A~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
. +|+||+|.|.||+|..+.+..+ .+.|||+|++|.+ ||+|.+|.+.
T Consensus 453 ~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIK-PWIFtEIkeq 501 (614)
T KOG2333|consen 453 SALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIK-PWIFTEIKEQ 501 (614)
T ss_pred cCceeEecCccccHHHHHHHhhcCCCcceEEeecccccc-chHhhhhhhh
Confidence 4 9999999999999999999855 8999999999976 9999999765
No 124
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.62 E-value=3.2e-15 Score=171.22 Aligned_cols=219 Identities=14% Similarity=0.142 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHhcCcE--EEeceeecc-------ccceecccc----ccCCCEEEEccCCC-CCCCCCCCCCCccccC-
Q psy16199 51 FDAVNFEVELVKDLGVK--IECERSLST-------RDITIEKLR----KDGYTAIFIGIGKP-NANVIPIFQGLTEEMG- 115 (842)
Q Consensus 51 ~~~v~~~~~~l~~~gV~--i~~~~~v~~-------~~v~~~~~~----~~~yd~lVlAtGs~-~~~~~~i~~G~~~~~g- 115 (842)
.+++++..++++++|++ +++++.|.. ..|+..+.. ...||+||||||.. .|+.+++| |+.+.+|
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ip-G~~~f~G~ 189 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIP-GIKSWPGK 189 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCC-CcccCCce
Confidence 47888889999999988 888887742 112222111 23589999999953 38888888 7666666
Q ss_pred ceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHHH
Q psy16199 116 FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQL 194 (842)
Q Consensus 116 v~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~ 194 (842)
++++.+| |+. ....+| |+|||+|.+|+|+|.+|.+.+ ++|+++.|+... .. ...
T Consensus 190 ~iHs~~y---------------r~~---~~~~gk~VvVVG~G~Sg~diA~~L~~~a-~~V~l~~r~~~~--~~----~~~ 244 (461)
T PLN02172 190 QIHSHNY---------------RVP---DPFKNEVVVVIGNFASGADISRDIAKVA-KEVHIASRASES--DT----YEK 244 (461)
T ss_pred EEEeccc---------------CCc---cccCCCEEEEECCCcCHHHHHHHHHHhC-CeEEEEEeeccc--cc----ccc
Confidence 3333322 221 334555 999999999999999999885 569999997521 10 111
Q ss_pred HHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCC
Q psy16199 195 AWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKY 274 (842)
Q Consensus 195 ~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~ 274 (842)
+......+..+..+..+. ++++ |+|.+ |+ .+++|.||+|||++ ++..|++....+..+++
T Consensus 245 ~~~~~~~v~~~~~I~~~~-~~g~---V~f~D-------------G~--~~~~D~Ii~~TGy~-~~~pfL~~~~~i~v~~~ 304 (461)
T PLN02172 245 LPVPQNNLWMHSEIDTAH-EDGS---IVFKN-------------GK--VVYADTIVHCTGYK-YHFPFLETNGYMRIDEN 304 (461)
T ss_pred CcCCCCceEECCccccee-cCCe---EEECC-------------CC--CccCCEEEECCcCC-ccccccCcccceeeCCC
Confidence 111223444555565554 3332 45543 33 56899999999999 67777654311233322
Q ss_pred CCeeeCCCCCCCC-CCCeEEeccCCCCchhHHHHHHHHHHHHH
Q psy16199 275 GYPEVNYTTMATS-VPGVFCGGDTANLSDTTVESVNDGKTAAW 316 (842)
Q Consensus 275 G~i~vd~~~~~Ts-~~gVfa~GD~~~~~~~~~~A~~~G~~aA~ 316 (842)
.....=...+-.. .|+++++|=...+ .....+-.|++.+|.
T Consensus 305 ~v~~Ly~~~f~~~~~p~LafiG~~~~~-~~f~~~E~Qa~~~a~ 346 (461)
T PLN02172 305 RVEPLYKHVFPPALAPGLSFIGLPAMG-IQFVMFEIQSKWVAA 346 (461)
T ss_pred cchhhHHhhcCCCCCCcEEEEeccccc-cCchhHHHHHHHHHH
Confidence 1100100112223 4899999965322 223455566655554
No 125
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.61 E-value=1e-14 Score=160.10 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=128.6
Q ss_pred HhHHHHHHHHHhhcCcCEEEEeccC---------CCCC-CCCCCcccCCCCHHHHHHHHHHHHhhCCc-cEEEEecCC--
Q psy16199 576 KDDWLELSKKTEKAGADALELNLSC---------PHGM-GERGMGLACGQDPEMVRNISLWVRSSVKI-PFFVKLTPN-- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~sc---------P~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~~~-Pv~vKl~p~-- 642 (842)
.++|.++|+++.++|+|+||||.+| |.+. ....||.++..+.+++.+++++||+.++. ||.+|++++
T Consensus 151 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~ 230 (338)
T cd02933 151 VADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGT 230 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECcccc
Confidence 5789999999999999999999887 8333 33448889999999999999999998854 899999753
Q ss_pred ---------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhh
Q psy16199 643 ---------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKM 713 (842)
Q Consensus 643 ---------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~ 713 (842)
.++..++++.+++.|+|.|.++...... .. ...-+.+++++++.
T Consensus 231 ~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~-------------------~~--------~~~~~~~~~~ik~~ 283 (338)
T cd02933 231 FNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAG-------------------NP--------EDQPPDFLDFLRKA 283 (338)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------cc--------cccchHHHHHHHHH
Confidence 2466799999999999999995321100 00 12337888899999
Q ss_pred CCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHH
Q psy16199 714 FPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 714 ~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
+ ++|||++|||. ++++.++|+.| ||+|+++|+++. +|+|++++.++
T Consensus 284 ~-~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la-dP~~~~k~~~g 330 (338)
T cd02933 284 F-KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA-NPDLVERLKNG 330 (338)
T ss_pred c-CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh-CcCHHHHHhcC
Confidence 8 79999999997 99999999965 999999999995 59999998764
No 126
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.60 E-value=1.3e-14 Score=160.29 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=132.5
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccC---------CCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecC-
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSC---------PHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTP- 641 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~sc---------P~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p- 641 (842)
..++|.++|+++.++|+|+||||.+| |.+. ....||+++..+.+++.+++++||+.+ ++||.+|+++
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~ 226 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH
Confidence 36899999999999999999999875 8543 334589999999999999999999998 5899999973
Q ss_pred -------ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC
Q psy16199 642 -------NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF 714 (842)
Q Consensus 642 -------~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~ 714 (842)
+.++..++++.+++.|+|.|.++......+.. ...+. .....+ ...-+...+++++.+
T Consensus 227 ~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~----~~~~~---------~~~~~~--~~~~~~~~~~ik~~v 291 (338)
T cd04733 227 DFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAM----AGAKK---------ESTIAR--EAYFLEFAEKIRKVT 291 (338)
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccc----ccccc---------CCcccc--chhhHHHHHHHHHHc
Confidence 44577899999999999999997653211000 00000 000000 112257778899998
Q ss_pred CCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHH
Q psy16199 715 PNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 715 ~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
++||+++|+|.+.+++.++|+.| ||+|+++|+++. +|+++++++++
T Consensus 292 -~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia-dP~~~~k~~~g 338 (338)
T cd04733 292 -KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL-EPDLPNKLLAG 338 (338)
T ss_pred -CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh-CccHHHHHhcC
Confidence 79999999999999999999976 999999999994 59999998753
No 127
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.60 E-value=2.1e-14 Score=160.53 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=131.0
Q ss_pred HhHHHHHHHHHhhcCcCEEEEec---c-------CCCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC
Q psy16199 576 KDDWLELSKKTEKAGADALELNL---S-------CPHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~---s-------cP~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~ 642 (842)
.++|.++|++++++|+|+||||. + +|.+. ....||+++..+.+++.+++++||+.+ ++||.+|++++
T Consensus 149 i~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~ 228 (382)
T cd02931 149 VGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 57899999999999999999997 5 46333 334489999999999999999999998 57999999852
Q ss_pred ----------------------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccc
Q psy16199 643 ----------------------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATR 700 (842)
Q Consensus 643 ----------------------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~ 700 (842)
+++..++++.+++.|+|.|.++.......... .|. .+.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~-----~~~----------~~~~~--- 290 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWN-----HPP----------MYQKK--- 290 (382)
T ss_pred hhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccc-----cCC----------ccCCc---
Confidence 34677899999999999999975432110000 000 00011
Q ss_pred cchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHH
Q psy16199 701 PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 701 p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
..-+.+++.+++.+ ++|||++|||.+++++.++|+.| ||+|+++|+++. +|+++++++++-
T Consensus 291 ~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g~ 352 (382)
T cd02931 291 GMYLPYCKALKEVV-DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA-DPDVVNKIRRGR 352 (382)
T ss_pred chhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh-CccHHHHHHcCC
Confidence 11256778888888 79999999999999999999965 999999999995 599999998764
No 128
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.59 E-value=2.5e-14 Score=157.75 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=130.3
Q ss_pred HhHHHHHHHHHhhcCcCEEEEec--c-------CCCCCC-CCCCcccCCCCHHHHHHHHHHHHhhCC--ccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNL--S-------CPHGMG-ERGMGLACGQDPEMVRNISLWVRSSVK--IPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~--s-------cP~~~~-~~~~G~~~~~~~~~~~~ii~~v~~~~~--~Pv~vKl~p~- 642 (842)
.++|.++|+++.++|+|+||||. + ||.... ...||+++..+.+++.+++++||+.++ +||.+|++++
T Consensus 140 i~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~ 219 (343)
T cd04734 140 IAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE 219 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh
Confidence 57899999999999999999998 3 784433 356899999999999999999999984 5677788652
Q ss_pred -------hhcHHHHHHHHHHCC-CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC
Q psy16199 643 -------ITNITDIAKAAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF 714 (842)
Q Consensus 643 -------~~~~~~~a~~~~~~G-~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~ 714 (842)
.++..++++.++++| +|.|.++........ . . +.. ....+.+ ....+++++++++.+
T Consensus 220 ~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~---~---~-----~~~-~~~~~~~---~~~~~~~~~~ik~~~ 284 (343)
T cd04734 220 DTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLL---G---L-----AHV-VPSMGMP---PGPFLPLAARIKQAV 284 (343)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCccc---c---c-----ccc-cCCCCCC---cchhHHHHHHHHHHc
Confidence 346789999999998 899999643221100 0 0 000 0000111 112367888899888
Q ss_pred CCCcEEEecCcCCHHHHHHHHHh-CCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 715 PNFPILGIGGIDSADVALQFIQA-GAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 715 ~~ipIi~~GGI~t~~da~~~l~~-GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
++|||++|||.+++++.++++. +||+|++||+++. +|++++++.++.
T Consensus 285 -~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la-dP~l~~k~~~g~ 332 (343)
T cd04734 285 -DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA-DPHLVAKAREGR 332 (343)
T ss_pred -CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh-CccHHHHHHcCC
Confidence 7999999999999999999995 5999999999995 599999987764
No 129
>PLN02979 glycolate oxidase
Probab=99.59 E-value=8.4e-14 Score=150.18 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=143.7
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccC-----------------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLAC----------------------------- 613 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~----------------------------- 613 (842)
.+...|+....+.+-..++.++++++|+.+|-+.+.+| ....+++.-..+
T Consensus 121 ~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
T PLN02979 121 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 200 (366)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 46788887666888899999999999999999998888 322222211000
Q ss_pred ----CCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCcc
Q psy16199 614 ----GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689 (842)
Q Consensus 614 ----~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~ 689 (842)
..++...++-++|+++.+++||+||-..+ .+-|+.+.++|+|+|+++|.-+. .
T Consensus 201 ~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~----~~dA~~a~~~Gvd~I~VsnhGGr-------------------q 257 (366)
T PLN02979 201 YVAGQIDRTLSWKDVQWLQTITKLPILVKGVLT----GEDARIAIQAGAAGIIVSNHGAR-------------------Q 257 (366)
T ss_pred HHhhcCCCCCCHHHHHHHHhccCCCEEeecCCC----HHHHHHHHhcCCCEEEECCCCcC-------------------C
Confidence 01233445779999999999999999754 45688999999999999886221 0
Q ss_pred ccCCCCCCccccchHHHHHHHHhhC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc----cC----chhHHHHH
Q psy16199 690 TYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN----QD----FTVVDDYI 760 (842)
Q Consensus 690 ~~gG~sG~~~~p~al~~v~~i~~~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~----~g----p~~~~~i~ 760 (842)
+.+ -|.++..+.++++.+ +++|||+.|||+++.|+.++|++||++|++++++++ .| -..++.++
T Consensus 258 ----ld~---~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~ 330 (366)
T PLN02979 258 ----LDY---VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLR 330 (366)
T ss_pred ----CCC---chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHH
Confidence 111 245688888888876 359999999999999999999999999999999994 23 36678888
Q ss_pred HHHHHHHHhcCC-CccccCC
Q psy16199 761 TGLQTLLYLKST-QLKGWDG 779 (842)
Q Consensus 761 ~~l~~~m~~~g~-~i~~~~~ 779 (842)
++|+..|...|+ +++++..
T Consensus 331 ~El~~~m~l~G~~~i~el~~ 350 (366)
T PLN02979 331 DEFELTMALSGCRSLKEISR 350 (366)
T ss_pred HHHHHHHHHhCCCCHHHhCh
Confidence 999999999999 9888853
No 130
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.58 E-value=6.5e-14 Score=159.24 Aligned_cols=265 Identities=18% Similarity=0.192 Sum_probs=170.8
Q ss_pred ccccCceeeecceeEeecCCCCccccccCCCC----CCCHHHHHHHHHHHHhcCcEEEeceeecc-----ccceeccccc
Q psy16199 16 EMSTAKVCLSKDLPDIERPVAALPDSSEIPQY----RLPFDAVNFEVELVKDLGVKIECERSLST-----RDITIEKLRK 86 (842)
Q Consensus 16 ~~~~~~~~~g~~V~l~Ek~~~GG~~~~~iP~~----~~~~~~v~~~~~~l~~~gV~i~~~~~v~~-----~~v~~~~~~~ 86 (842)
|.+.++...+.+|+++.++..-....+.++.+ ....+.+........+.+++++.++.+.. +.+.+.++ .
T Consensus 14 a~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~ 92 (415)
T COG0446 14 ATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDG-E 92 (415)
T ss_pred HHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEecCCCCEEEECCC-c
Confidence 33456667788888887763333333333322 11111121111122466899988876643 33555555 6
Q ss_pred cCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchH--HHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHH
Q psy16199 87 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLP--RVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 164 (842)
Q Consensus 87 ~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~--~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~ 164 (842)
..||++|+|||++ ++.++ . ....++++....-. ..... ....++++|+|+|.+|+++|.
T Consensus 93 ~~yd~LvlatGa~-~~~~~-~---~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~vvG~G~~gle~A~ 153 (415)
T COG0446 93 IEYDYLVLATGAR-PRPPP-I---SDWEGVVTLRLREDAEALKGG--------------AEPPKDVVVVGAGPIGLEAAE 153 (415)
T ss_pred ccccEEEEcCCCc-ccCCC-c---cccCceEEECCHHHHHHHHHH--------------HhccCeEEEECCcHHHHHHHH
Confidence 6799999999999 66554 1 23445554322211 11111 111356999999999999999
Q ss_pred HHHHcCCcEEEEEEeecCccccCC-HH---HH-HHHHhcCcEEecCCCceEEEccCCcEEE--EEEEeecccCCCCeecc
Q psy16199 165 SALRCGANKVLVVFRKGCTNIRAV-PE---EV-QLAWEEKCEFLPFMSPVQVDVKDNKIAG--MQFNRTEQNEKGEWVED 237 (842)
Q Consensus 165 ~l~~~G~~~Vtlv~r~~~~~~~~~-~~---~~-~~~~~~gV~i~~~~~v~~v~~~~~~v~~--V~~~~~~~~~~G~~~~~ 237 (842)
.+.+.|.+ |++++..++...+.. ++ .+ +.+.+.||+++++..+.++....+.... +...
T Consensus 154 ~~~~~G~~-v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~------------- 219 (415)
T COG0446 154 AAAKRGKK-VTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI------------- 219 (415)
T ss_pred HHHHcCCe-EEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEe-------------
Confidence 99999965 999998875333222 22 22 3456779999999999999854333322 1221
Q ss_pred CCceEEEECCEEEEccccCcCChhHHhhcCC-cccCCCCCeeeCCCCCCCC-CCCeEEeccCCCC----------chhHH
Q psy16199 238 EEQRIKLKANYIISAFGSTLLDNDVLEAIKP-VKLDKYGYPEVNYTTMATS-VPGVFCGGDTANL----------SDTTV 305 (842)
Q Consensus 238 ~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~g-l~~~~~G~i~vd~~~~~Ts-~~gVfa~GD~~~~----------~~~~~ 305 (842)
....+++|.+++++|.+ |+..+.... + .....+|++.|| +.++|+ .++||++||++.. .....
T Consensus 220 --~~~~~~~d~~~~~~g~~-p~~~l~~~~-~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~ 294 (415)
T COG0446 220 --DGEEIKADLVIIGPGER-PNVVLANDA-LPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWA 294 (415)
T ss_pred --CCcEEEeeEEEEeeccc-ccHHHHhhC-ccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechh
Confidence 22479999999999999 667777664 2 245667899999 688887 9999999998542 13456
Q ss_pred HHHHHHHHHHHHHH
Q psy16199 306 ESVNDGKTAAWHIH 319 (842)
Q Consensus 306 ~A~~~G~~aA~~I~ 319 (842)
.|..+++.++.++.
T Consensus 295 ~a~~~~~i~~~~~~ 308 (415)
T COG0446 295 IAVAAGRIAAENIA 308 (415)
T ss_pred hHhhhhHHHHHHhc
Confidence 77888888888775
No 131
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.58 E-value=1.7e-14 Score=159.94 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=129.7
Q ss_pred HhHHHHHHHHHhhcCcCEEEEec---------cCCCCCC-CCCCcccCCCCHHHHHHHHHHHHhhC------CccEEEEe
Q psy16199 576 KDDWLELSKKTEKAGADALELNL---------SCPHGMG-ERGMGLACGQDPEMVRNISLWVRSSV------KIPFFVKL 639 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~---------scP~~~~-~~~~G~~~~~~~~~~~~ii~~v~~~~------~~Pv~vKl 639 (842)
.++|.++|++++++|+|+||||. .||.+.. ...||+++..+.+++.|++++||+++ ++||.+|+
T Consensus 143 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~ 222 (353)
T cd04735 143 IDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRF 222 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 57899999999999999999996 4895443 44589999999999999999999986 46888999
Q ss_pred cCC--------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHH
Q psy16199 640 TPN--------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIA 711 (842)
Q Consensus 640 ~p~--------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~ 711 (842)
+++ .++..++++.+++.|+|.|.++...... ...... +.....++.++
T Consensus 223 s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~-----------------~~~~~~-------~~~~~~~~~ik 278 (353)
T cd04735 223 SPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDR-----------------KSRRGR-------DDNQTIMELVK 278 (353)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcccc-----------------ccccCC-------cchHHHHHHHH
Confidence 763 3467899999999999999996532110 000000 01245556666
Q ss_pred hhC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 712 KMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 712 ~~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
+.+ .++|||++|||.|++++.++++.|||+|+++|+++.+ |+++.+++++..
T Consensus 279 ~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad-Pdl~~k~~~G~~ 331 (353)
T cd04735 279 ERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD-PDWVEKIKEGRE 331 (353)
T ss_pred HHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC-ccHHHHHHcCCh
Confidence 665 2699999999999999999999999999999999955 999999988754
No 132
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.58 E-value=8.5e-14 Score=151.70 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=143.2
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccC-----------------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLAC----------------------------- 613 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~----------------------------- 613 (842)
.|...|+....+.+...++.++++++|+.+|-+.+.+| ....+++.-..+
T Consensus 122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
T PLN02493 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 201 (367)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 46788887667888899999999999999999998888 322222111000
Q ss_pred ----CCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCcc
Q psy16199 614 ----GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689 (842)
Q Consensus 614 ----~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~ 689 (842)
..++...++-++|+|+.+++||+||-..+ .+-|+.+.++|+|+|+++|.-+. .
T Consensus 202 ~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~----~~dA~~a~~~Gvd~I~VsnhGGr-------------------q 258 (367)
T PLN02493 202 YVAGQIDRTLSWKDVQWLQTITKLPILVKGVLT----GEDARIAIQAGAAGIIVSNHGAR-------------------Q 258 (367)
T ss_pred HHhhcCCCCCCHHHHHHHHhccCCCEEeecCCC----HHHHHHHHHcCCCEEEECCCCCC-------------------C
Confidence 01233445778999999999999998754 45688999999999999886221 0
Q ss_pred ccCCCCCCccccchHHHHHHHHhhC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc----C----chhHHHHH
Q psy16199 690 TYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ----D----FTVVDDYI 760 (842)
Q Consensus 690 ~~gG~sG~~~~p~al~~v~~i~~~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~----g----p~~~~~i~ 760 (842)
+.+ -|.++..+.++++.+ +++|||+.|||+++.|+.++|.+||++|+|++.+++. | -.+++.+.
T Consensus 259 ----ld~---~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~ 331 (367)
T PLN02493 259 ----LDY---VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLR 331 (367)
T ss_pred ----CCC---chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHH
Confidence 111 245688888888876 3599999999999999999999999999999999942 2 35677888
Q ss_pred HHHHHHHHhcCC-CccccCC
Q psy16199 761 TGLQTLLYLKST-QLKGWDG 779 (842)
Q Consensus 761 ~~l~~~m~~~g~-~i~~~~~ 779 (842)
++|+..|...|+ +++++..
T Consensus 332 ~el~~~m~l~G~~~i~~l~~ 351 (367)
T PLN02493 332 DEFELTMALSGCRSLKEISR 351 (367)
T ss_pred HHHHHHHHHhCCCCHHHhCh
Confidence 999999999999 9988853
No 133
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.57 E-value=1.1e-13 Score=151.73 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=140.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccC-----------------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLAC----------------------------- 613 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~----------------------------- 613 (842)
.|...|+....+.+...+++++++++|+.+|-+.+.+| ...++++.-..+
T Consensus 122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~ 201 (381)
T PRK11197 122 RPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRP 201 (381)
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCC
Confidence 47788886667888899999999999999999999888 332222100000
Q ss_pred ------C-------------------CCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCC
Q psy16199 614 ------G-------------------QDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVS 668 (842)
Q Consensus 614 ------~-------------------~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~ 668 (842)
. .++..-++-++++++.++.||++|-..+ .+-|+.+.+.|+|+|+++|.
T Consensus 202 ~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s----~~dA~~a~~~Gvd~I~Vs~h-- 275 (381)
T PRK11197 202 HDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILD----PEDARDAVRFGADGIVVSNH-- 275 (381)
T ss_pred CcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCC----HHHHHHHHhCCCCEEEECCC--
Confidence 0 0111223448999999999999998754 34588899999999999874
Q ss_pred ccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehh
Q psy16199 669 GLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747 (842)
Q Consensus 669 ~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta 747 (842)
||-.... .+.+...+.++++.+ .++|||+.|||+++.|+.++|++||++|++++.
T Consensus 276 -----------------------GGr~~d~-~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~ 331 (381)
T PRK11197 276 -----------------------GGRQLDG-VLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRA 331 (381)
T ss_pred -----------------------CCCCCCC-cccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHH
Confidence 2211111 234567788887766 369999999999999999999999999999999
Q ss_pred hhcc----C----chhHHHHHHHHHHHHHhcCC-CccccCC
Q psy16199 748 VQNQ----D----FTVVDDYITGLQTLLYLKST-QLKGWDG 779 (842)
Q Consensus 748 ~l~~----g----p~~~~~i~~~l~~~m~~~g~-~i~~~~~ 779 (842)
+++. | -..++.++++|+..|.+.|+ +++|+..
T Consensus 332 ~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~ 372 (381)
T PRK11197 332 FVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITR 372 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCH
Confidence 9942 2 36788899999999999999 9999864
No 134
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.56 E-value=4.7e-14 Score=155.32 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=127.6
Q ss_pred HhHHHHHHHHHhhcCcCEEEEeccC---------CCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNLSC---------PHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~sc---------P~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~- 642 (842)
.++|.++|+++.++|+|+||||..| |.+. ....||+++.++.+++.|++++||+.+ +.||.+|+++.
T Consensus 143 i~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~ 222 (361)
T cd04747 143 IAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWK 222 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccc
Confidence 5789999999999999999999887 8443 345599999999999999999999997 58999999861
Q ss_pred -----------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHH
Q psy16199 643 -----------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIA 711 (842)
Q Consensus 643 -----------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~ 711 (842)
.++..++++.+++.|+|.|.++.... . .|. +.|. .+.+...++
T Consensus 223 ~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~-------~---~~~-----------~~~~-----~~~~~~~~k 276 (361)
T cd04747 223 QQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRF-------W---EPE-----------FEGS-----ELNLAGWTK 276 (361)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCc-------c---CCC-----------cCcc-----chhHHHHHH
Confidence 12456788889999999998853200 0 010 1111 245566778
Q ss_pred hhCCCCcEEEecCc------------------CCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 712 KMFPNFPILGIGGI------------------DSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 712 ~~~~~ipIi~~GGI------------------~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
+.+ ++||+++|+| .|++++.++|..| ||+|+++|+++. +|+++++++++-.
T Consensus 277 ~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia-dP~~~~k~~~g~~ 346 (361)
T cd04747 277 KLT-GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS-DPAWVAKVREGRL 346 (361)
T ss_pred HHc-CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh-CcHHHHHHHcCCc
Confidence 887 7999999999 5999999999965 999999999995 5999999877643
No 135
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.56 E-value=2.1e-13 Score=148.63 Aligned_cols=183 Identities=20% Similarity=0.164 Sum_probs=139.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccC-----------------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLAC----------------------------- 613 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~----------------------------- 613 (842)
.|...|+.. .+.+....+.++++++|+.+|-+.+.+| ....+++.-..+
T Consensus 116 ~~~wfQLY~-~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~ 194 (361)
T cd04736 116 GDLWFQLYV-VHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGM 194 (361)
T ss_pred CCeEEEEEe-cCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccc
Confidence 467888876 4577788999999999999999988777 222221100000
Q ss_pred -----------------------CCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCcc
Q psy16199 614 -----------------------GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGL 670 (842)
Q Consensus 614 -----------------------~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~ 670 (842)
..|+....+.++++++.++.|+++|-.-+ .+-|+.+.+.|+|+|+++|.-+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~~----~eda~~a~~~G~d~I~VSnhGGr- 269 (361)
T cd04736 195 PQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVT----AEDAKRCIELGADGVILSNHGGR- 269 (361)
T ss_pred ccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCCC----HHHHHHHHHCCcCEEEECCCCcC-
Confidence 01233456789999999999999996533 34588899999999999885221
Q ss_pred ccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 671 MSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 671 ~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
. +.+ .+.++..+.++++.+ ++|||+.|||+++.|+.++|.+||++|++++++++
T Consensus 270 -------------------q---ld~---~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 270 -------------------Q---LDD---AIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred -------------------C---CcC---CccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 111 123588888998888 69999999999999999999999999999999993
Q ss_pred ----cC----chhHHHHHHHHHHHHHhcCC-CccccC
Q psy16199 751 ----QD----FTVVDDYITGLQTLLYLKST-QLKGWD 778 (842)
Q Consensus 751 ----~g----p~~~~~i~~~l~~~m~~~g~-~i~~~~ 778 (842)
.| -..++.++++|+..|.+.|+ +++|+.
T Consensus 324 ~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 324 GLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 33 45677889999999999999 988874
No 136
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.56 E-value=1.7e-13 Score=150.72 Aligned_cols=185 Identities=21% Similarity=0.218 Sum_probs=141.7
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccC-----------------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLAC----------------------------- 613 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~----------------------------- 613 (842)
.+...|+....+.+...++.++++++|+.+|-+.+..| ...++++.-..+
T Consensus 138 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (383)
T cd03332 138 APRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGED 217 (383)
T ss_pred CCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCC
Confidence 46788887666888899999999999999999987766 222222210000
Q ss_pred -----------------CCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCC
Q psy16199 614 -----------------GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSAD 676 (842)
Q Consensus 614 -----------------~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~ 676 (842)
..++..-++.++++++.+++||++|-..+ .+-|+.+.+.|+|+|+++|.-+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~~----~~dA~~a~~~G~d~I~vsnhGGr------- 286 (383)
T cd03332 218 PEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILH----PDDARRAVEAGVDGVVVSNHGGR------- 286 (383)
T ss_pred cccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCCC----HHHHHHHHHCCCCEEEEcCCCCc-------
Confidence 01233446889999999999999995543 35588999999999999875221
Q ss_pred CCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc----c
Q psy16199 677 GNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN----Q 751 (842)
Q Consensus 677 ~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~----~ 751 (842)
. +.+ -+.++..+.++++.++ ++|||+.|||+++.|+.++|++||++|+++|++++ .
T Consensus 287 ------------~----~d~---~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~ 347 (383)
T cd03332 287 ------------Q----VDG---SIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALG 347 (383)
T ss_pred ------------C----CCC---CcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc
Confidence 0 111 2345778888888774 49999999999999999999999999999999993 2
Q ss_pred C----chhHHHHHHHHHHHHHhcCC-CccccC
Q psy16199 752 D----FTVVDDYITGLQTLLYLKST-QLKGWD 778 (842)
Q Consensus 752 g----p~~~~~i~~~l~~~m~~~g~-~i~~~~ 778 (842)
| -.+++.++++|+..|...|+ +++|+.
T Consensus 348 G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~ 379 (383)
T cd03332 348 GEDGVEHVLRNLLAELDLTMGLAGIRSIAELT 379 (383)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 3 36778889999999999999 998885
No 137
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.53 E-value=1.4e-13 Score=150.92 Aligned_cols=167 Identities=22% Similarity=0.329 Sum_probs=132.1
Q ss_pred HhHHHHHHHHHhhcCcCEEEEe---------ccCCCCCCC-CCCcccCCCCHHHHHHHHHHHHhhCC--ccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELN---------LSCPHGMGE-RGMGLACGQDPEMVRNISLWVRSSVK--IPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN---------~scP~~~~~-~~~G~~~~~~~~~~~~ii~~v~~~~~--~Pv~vKl~p~- 642 (842)
.++|.++|+++.+||+|+|||| |-+|.+..+ ..||.++..+..++.|++++||++++ .||.++++++
T Consensus 148 i~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d 227 (363)
T COG1902 148 IEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDD 227 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 5789999999999999999997 558944433 45999999999999999999999985 5999999873
Q ss_pred --------hhcHHHHHHHHHHCC-CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhh
Q psy16199 643 --------ITNITDIAKAAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKM 713 (842)
Q Consensus 643 --------~~~~~~~a~~~~~~G-~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~ 713 (842)
+++..++++.+++.| +|.|.++.-.... .+.+ ...+ .| .-+.....++..
T Consensus 228 ~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~---------~~~~------~~~~-~~-----~~~~~a~~i~~~ 286 (363)
T COG1902 228 FFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYER---------GGTI------TVSG-PG-----YQVEFAARIKKA 286 (363)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccC---------CCCc------cccc-cc-----hhHHHHHHHHHh
Confidence 226789999999999 7999997632210 0000 0000 00 114555667777
Q ss_pred CCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHHHH
Q psy16199 714 FPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGLQT 765 (842)
Q Consensus 714 ~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l~~ 765 (842)
. .+|+|++|+|.+++.|.+.++.| ||+|.++|+++. +|.|+.++.++...
T Consensus 287 ~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la-dP~~~~k~~~g~~~ 337 (363)
T COG1902 287 V-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA-DPDLVLKAAEGREL 337 (363)
T ss_pred c-CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc-CccHHHHHHcCCCc
Confidence 7 69999999999999999999998 999999999995 59999999888753
No 138
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.53 E-value=1.1e-13 Score=153.70 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=130.0
Q ss_pred HhHHHHHHHHHhhcCcCEEEEecc---------CCCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecC--
Q psy16199 576 KDDWLELSKKTEKAGADALELNLS---------CPHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTP-- 641 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~s---------cP~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p-- 641 (842)
.++|.++|+++.++|+|+||||.. ||.+. ....||+++..+.+++.+++++||+.+ ++||.+|+++
T Consensus 136 ~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D 215 (353)
T cd02930 136 IEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLD 215 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccc
Confidence 578999999999999999999853 89543 445589999999999999999999997 5688889874
Q ss_pred ------ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 642 ------NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 642 ------~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
+..+..++++.++++|+|.|.++...... +.+.. ..++++ ..-+...+++++.+
T Consensus 216 ~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~--------~~~~~--------~~~~~~---~~~~~~~~~ik~~v- 275 (353)
T cd02930 216 LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEA--------RVPTI--------ATSVPR---GAFAWATAKLKRAV- 275 (353)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--------CCccc--------cccCCc---hhhHHHHHHHHHhC-
Confidence 33467799999999999999995432110 00000 001111 11255677888888
Q ss_pred CCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHH
Q psy16199 716 NFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
++||+++|+|.+++++.++++.| +|+|+++|+++. +|+++++++++-
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~-dP~~~~k~~~g~ 323 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA-DPDFVAKAAAGR 323 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH-CccHHHHHHhCC
Confidence 79999999999999999999965 999999999995 599999998764
No 139
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.52 E-value=8.5e-14 Score=153.17 Aligned_cols=186 Identities=23% Similarity=0.299 Sum_probs=134.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCC-CCC---------------CCC------------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG-MGE---------------RGM------------------ 609 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~-~~~---------------~~~------------------ 609 (842)
.|...++..-.+.+...++.++++++|+++|-+++.+|.. ..+ +.+
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 4677788655688889999999999999999998654411 000 000
Q ss_pred ----cccC---------CCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCC
Q psy16199 610 ----GLAC---------GQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSAD 676 (842)
Q Consensus 610 ----G~~~---------~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~ 676 (842)
+... ..++...++-++++++.+++||+||-.-+ .+-|+.+.+.|+++|+++|.-
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~----~~da~~~~~~G~~~i~vs~hG--------- 256 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLS----PEDAKRAVDAGVDGIDVSNHG--------- 256 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-S----HHHHHHHHHTT-SEEEEESGT---------
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEeccc----HHHHHHHHhcCCCEEEecCCC---------
Confidence 0000 01455666789999999999999999743 355899999999999999852
Q ss_pred CCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc----
Q psy16199 677 GNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ---- 751 (842)
Q Consensus 677 ~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~---- 751 (842)
|.+-.. -+.++..+.++++.++ ++|||++|||+++.|+.+++++||++|.+++++++.
T Consensus 257 ----------------Gr~~d~-~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~ 319 (356)
T PF01070_consen 257 ----------------GRQLDW-GPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAG 319 (356)
T ss_dssp ----------------GTSSTT-S-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHH
T ss_pred ----------------cccCcc-ccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHh
Confidence 211111 2445788888888764 699999999999999999999999999999999942
Q ss_pred C----chhHHHHHHHHHHHHHhcCC-CccccCC
Q psy16199 752 D----FTVVDDYITGLQTLLYLKST-QLKGWDG 779 (842)
Q Consensus 752 g----p~~~~~i~~~l~~~m~~~g~-~i~~~~~ 779 (842)
| -.+++.++++|+..|.+.|+ +++|+..
T Consensus 320 g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~ 352 (356)
T PF01070_consen 320 GEEGVERVLEILKEELKRAMFLLGARSIAELRR 352 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCH
Confidence 2 35578889999999999999 9999864
No 140
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.51 E-value=2.7e-13 Score=150.90 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=126.9
Q ss_pred HhHHHHHHHHHhhcCcCEEEEeccC---------CCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNLSC---------PHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~sc---------P~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~- 642 (842)
.++|.++|+++.++|+|+||||..| |.+. ....||+++..+.+++.|++++||+.+ ++||.+|++++
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 5789999999999999999999887 8433 334599999999999999999999998 47889998752
Q ss_pred ---------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhh
Q psy16199 643 ---------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKM 713 (842)
Q Consensus 643 ---------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~ 713 (842)
.++..++++.+++. +|.+.++...... . ..+ .+...+|+ .+.+++++++.
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~-----~--~~~-----~~~~~~~~--------~~~~~~~ik~~ 287 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWAN-----D--GED-----SRFYPEGH--------QEPYIKFVKQV 287 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccc-----c--ccc-----cccCCccc--------cHHHHHHHHHH
Confidence 23556888888776 7888885321110 0 000 00000111 26677888888
Q ss_pred CCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHH
Q psy16199 714 FPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 714 ~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
+ ++|||++|||.+++++.++|..| ||+|+++|+++. +|+++++++++-
T Consensus 288 ~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g~ 336 (370)
T cd02929 288 T-SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA-DPFLPKKIREGR 336 (370)
T ss_pred C-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh-CchHHHHHHcCC
Confidence 8 79999999999999999999976 999999999995 599999998774
No 141
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.50 E-value=1.7e-12 Score=139.76 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=126.3
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcC--cCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecCC
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAG--ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTPN 642 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~ag--aD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~ 642 (842)
+++++..+.+++++.++.+.++ +| +|+|.|...-+| ...+.++++++++..+ +||++|-..+
T Consensus 86 l~v~~~vg~~~~~~~~~~~Lv~-ag~~~d~i~iD~a~gh--------------~~~~~e~I~~ir~~~p~~~vi~g~V~t 150 (326)
T PRK05458 86 LIASISVGVKDDEYDFVDQLAA-EGLTPEYITIDIAHGH--------------SDSVINMIQHIKKHLPETFVIAGNVGT 150 (326)
T ss_pred cEEEEEecCCHHHHHHHHHHHh-cCCCCCEEEEECCCCc--------------hHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 3566655667888877777665 55 499999875544 3678899999999885 8999884333
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
.+-++.|.++|+|+|.+.++-+.. -++ +...|. +.+ ...+..+.++++.. ++|||+.
T Consensus 151 ----~e~a~~l~~aGad~i~vg~~~G~~---~~t-----------~~~~g~--~~~--~w~l~ai~~~~~~~-~ipVIAd 207 (326)
T PRK05458 151 ----PEAVRELENAGADATKVGIGPGKV---CIT-----------KIKTGF--GTG--GWQLAALRWCAKAA-RKPIIAD 207 (326)
T ss_pred ----HHHHHHHHHcCcCEEEECCCCCcc---ccc-----------ccccCC--CCC--ccHHHHHHHHHHHc-CCCEEEe
Confidence 355888999999999998774421 000 001111 111 11255577888776 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhh--------------------------cc--------C-----------chhHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQ--------------------------NQ--------D-----------FTVVD 757 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l--------------------------~~--------g-----------p~~~~ 757 (842)
|||+++.|+.++|++||++||++++|. +. | ..++.
T Consensus 208 GGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~ 287 (326)
T PRK05458 208 GGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLT 287 (326)
T ss_pred CCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHH
Confidence 999999999999999999999999997 11 0 13456
Q ss_pred HHHHHHHHHHHhcCC-CccccCC
Q psy16199 758 DYITGLQTLLYLKST-QLKGWDG 779 (842)
Q Consensus 758 ~i~~~l~~~m~~~g~-~i~~~~~ 779 (842)
++..+|+..|...|+ +|+|++.
T Consensus 288 ~l~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 288 EMEQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred HHHHHHHHHHHHhCCCCHHHHhc
Confidence 677788888888888 8888863
No 142
>KOG1346|consensus
Probab=99.49 E-value=8.2e-14 Score=147.57 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=152.2
Q ss_pred HhcCcEEEeceeecc-----ccceeccccccCCCEEEEccCCCCCCCCCCCCCCcc-c----cCceehhcchHHHhhccc
Q psy16199 62 KDLGVKIECERSLST-----RDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTE-E----MGFYTSKTFLPRVATSSK 131 (842)
Q Consensus 62 ~~~gV~i~~~~~v~~-----~~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~~-~----~gv~~~~~~l~~~~~~~~ 131 (842)
..-||.+..+..+-. +.|+++++..++||.++||||.+ |+.+++...... . ..+.+..||-+ +.+.
T Consensus 268 ~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~-Pk~l~~~~~A~~evk~kit~fr~p~DF~r-lek~-- 343 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVR-PKKLQVFEEASEEVKQKITYFRYPADFKR-LEKG-- 343 (659)
T ss_pred ccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcC-cccchhhhhcCHHhhhheeEEecchHHHH-HHHh--
Confidence 344688877765421 45788999999999999999999 887776421100 0 11333444443 2221
Q ss_pred CCccCCCCCCCCCCCCCcEEEEcCChhHHHHHHHHHHc----CCcEEEEEEeecCccccCCHHH-----HHHHHhcCcEE
Q psy16199 132 KGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC----GANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEF 202 (842)
Q Consensus 132 ~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~~l~~~----G~~~Vtlv~r~~~~~~~~~~~~-----~~~~~~~gV~i 202 (842)
..-.++|.|||+|+.|.|+|..|.++ |.+ |+-++......-...++. ++.+++.||.+
T Consensus 344 ------------~aek~siTIiGnGflgSELacsl~rk~r~~g~e-V~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 344 ------------LAEKQSITIIGNGFLGSELACSLKRKYRNEGVE-VHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred ------------hhhcceEEEEcCcchhhhHHHHHHHhhhccCcE-EEEeecccCChhhhhHHHHHHHHHHHHHhcCcee
Confidence 11234599999999999999999876 333 666665543222233443 34567789999
Q ss_pred ecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCC-CCCeeeCC
Q psy16199 203 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDK-YGYPEVNY 281 (842)
Q Consensus 203 ~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~-~G~i~vd~ 281 (842)
+.+..|..+....+.+. +.+.+ | .++..|+|++|+|.. ||.++++.. |+++|+ -|...||.
T Consensus 411 ~pna~v~sv~~~~~nl~-lkL~d-------------G--~~l~tD~vVvavG~e-PN~ela~~s-gLeiD~~lGGfrvna 472 (659)
T KOG1346|consen 411 RPNAKVESVRKCCKNLV-LKLSD-------------G--SELRTDLVVVAVGEE-PNSELAEAS-GLEIDEKLGGFRVNA 472 (659)
T ss_pred ccchhhhhhhhhccceE-EEecC-------------C--CeeeeeeEEEEecCC-Cchhhcccc-cceeecccCcEEeeh
Confidence 99999988864444443 44543 2 378999999999999 899999887 899986 47788884
Q ss_pred CCCCCCCCCeEEeccCCCCc---------hhHHHHHHHHHHHHHHHHH
Q psy16199 282 TTMATSVPGVFCGGDTANLS---------DTTVESVNDGKTAAWHIHK 320 (842)
Q Consensus 282 ~~~~Ts~~gVfa~GD~~~~~---------~~~~~A~~~G~~aA~~I~~ 320 (842)
+ ++ ...|||++||++... ...-.|+-.||.|+.||..
T Consensus 473 e-L~-ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 473 E-LK-ARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred e-ee-cccceeeecchhhhhcccccceeccccccceeeceeccccccc
Confidence 3 33 357999999996421 2344688899999999853
No 143
>KOG0538|consensus
Probab=99.49 E-value=5e-13 Score=136.63 Aligned_cols=173 Identities=24% Similarity=0.301 Sum_probs=130.8
Q ss_pred HhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCC-----------------------Ccc----cC------CCCHHHHH
Q psy16199 576 KDDWLELSKKTEKAGADALELNLSCP-HGMGERG-----------------------MGL----AC------GQDPEMVR 621 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~-----------------------~G~----~~------~~~~~~~~ 621 (842)
.+--..++++++++|+.+|-+.+..| -+.++.+ ++. .+ .-|+..-+
T Consensus 133 r~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W 212 (363)
T KOG0538|consen 133 RDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSW 212 (363)
T ss_pred hHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCCh
Confidence 34445667889999999999865444 1111110 000 00 12677788
Q ss_pred HHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCcccc
Q psy16199 622 NISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701 (842)
Q Consensus 622 ~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p 701 (842)
+-++|+++.+++||++|-.-+-+| |+.+.++|++||+++|.-+. . +.+ -|
T Consensus 213 ~Di~wLr~~T~LPIvvKGilt~eD----A~~Ave~G~~GIIVSNHGgR------------Q-----------lD~---vp 262 (363)
T KOG0538|consen 213 KDIKWLRSITKLPIVVKGVLTGED----ARKAVEAGVAGIIVSNHGGR------------Q-----------LDY---VP 262 (363)
T ss_pred hhhHHHHhcCcCCeEEEeecccHH----HHHHHHhCCceEEEeCCCcc------------c-----------cCc---cc
Confidence 899999999999999998765545 88999999999999995221 0 111 35
Q ss_pred chHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc----cC----chhHHHHHHHHHHHHHhcCC
Q psy16199 702 MGLKAVSSIAKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN----QD----FTVVDDYITGLQTLLYLKST 772 (842)
Q Consensus 702 ~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~----~g----p~~~~~i~~~l~~~m~~~g~ 772 (842)
.+++.+.++.+++. ++||...|||+++.|+.+++++||.+|-+||.+++ +| -..++-++++++.-|.+.|+
T Consensus 263 AtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc 342 (363)
T KOG0538|consen 263 ATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGC 342 (363)
T ss_pred chHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 66889999988874 49999999999999999999999999999999994 22 34566778889999999999
Q ss_pred -CccccC
Q psy16199 773 -QLKGWD 778 (842)
Q Consensus 773 -~i~~~~ 778 (842)
++.++.
T Consensus 343 ~sv~ei~ 349 (363)
T KOG0538|consen 343 RSVKEIT 349 (363)
T ss_pred CchhhhC
Confidence 998875
No 144
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=158.75 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=128.4
Q ss_pred HhHHHHHHHHHhhcCcCEEEEecc---------CCCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNLS---------CPHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~s---------cP~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~- 642 (842)
.++|.++|+++.++|+|+||||.+ ||... ....||+++..+.+++.+++++|++.+ ++||.+|+++.
T Consensus 550 i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~ 629 (765)
T PRK08255 550 RDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD 629 (765)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc
Confidence 578999999999999999999988 99543 445589999999999999999999987 58999999862
Q ss_pred -------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 643 -------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 643 -------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
.++..++++.+++.|+|.|.++...... . ..|. ++ ......+..++++.+
T Consensus 630 ~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~-----~--~~~~--------~~-------~~~~~~~~~~ik~~~- 686 (765)
T PRK08255 630 WVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSK-----D--EKPV--------YG-------RMYQTPFADRIRNEA- 686 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCc-----C--CCCC--------cC-------ccccHHHHHHHHHHc-
Confidence 2467799999999999999996321100 0 0000 00 001134567888888
Q ss_pred CCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHH
Q psy16199 716 NFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
++|||++|+|.+++++.++|+.| ||+|+++|+++. +|.++.+...++
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~-dP~~~~~~~~~~ 734 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA-DPAWTLHEAAEI 734 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh-CccHHHHHHHHc
Confidence 79999999999999999999955 999999999995 598877665554
No 145
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.42 E-value=3.8e-12 Score=141.10 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=125.8
Q ss_pred HhHHHHHHHHHhhcCcCEEEEe---------ccCCCCCCC-CCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecCC--
Q psy16199 576 KDDWLELSKKTEKAGADALELN---------LSCPHGMGE-RGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTPN-- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN---------~scP~~~~~-~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~-- 642 (842)
.++|..+|+++.++|+|+|||| |-+|.+..+ ..||+++..+.+++.|++++||+.++ -+|.+|+++.
T Consensus 158 i~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~ 237 (362)
T PRK10605 158 VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGT 237 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 5789999999999999999998 458855444 44999999999999999999999873 2599999763
Q ss_pred ---------hhc-HHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh
Q psy16199 643 ---------ITN-ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK 712 (842)
Q Consensus 643 ---------~~~-~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~ 712 (842)
.++ ..++++.+++.|+|.|.++.. .. .+ + .+....+.+++++
T Consensus 238 ~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~--~~--------------------~~---~---~~~~~~~~~~ik~ 289 (362)
T PRK10605 238 FNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP--DW--------------------AG---G---EPYSDAFREKVRA 289 (362)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc--cc--------------------cC---C---ccccHHHHHHHHH
Confidence 124 578899999999999998531 00 00 0 1122556678888
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHH
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
.+ ++||+++|++ |++.+.+.|..| ||+|.++|+++. +|+++++++++.
T Consensus 290 ~~-~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia-dPd~~~k~~~g~ 338 (362)
T PRK10605 290 RF-HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA-NPDLVARLQRKA 338 (362)
T ss_pred HC-CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh-CccHHHHHhcCC
Confidence 88 6899999996 899999999987 999999999995 599999997763
No 146
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.41 E-value=6.4e-13 Score=146.77 Aligned_cols=170 Identities=21% Similarity=0.275 Sum_probs=127.0
Q ss_pred HhHHHHHHHHHhhcCcCEEEEec---------cCCCCC-CCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-
Q psy16199 576 KDDWLELSKKTEKAGADALELNL---------SCPHGM-GERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN- 642 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~---------scP~~~-~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~- 642 (842)
.++|.++|+++.+||+|+||||. -+|.+. +...||+++..+..++.|++++||+.+ +.||.+|++++
T Consensus 148 i~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~ 227 (341)
T PF00724_consen 148 IEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTC
T ss_pred HHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeec
Confidence 57899999999999999999984 488544 344599999889999999999999987 68999999874
Q ss_pred -------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 643 -------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 643 -------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
+++..++++.+.+.|+|.+.+++..... .. .|.. . ..........+.....+++.+
T Consensus 228 ~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~--~~-----~~~~-------~--~~~~~~~~~~~~~a~~ik~~~- 290 (341)
T PF00724_consen 228 FVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVH--WS-----EPRP-------S--PPFDFEPGYNLDLAEAIKKAV- 290 (341)
T ss_dssp SSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEE--EE-----BTSS-------T--TTTTTTTTTTHHHHHHHHHHH-
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhcccccccccc--cc-----cccc-------c--cccccccchhhhhhhhhhhhc-
Confidence 2356677999999999988765421110 00 0000 0 000000113366778888887
Q ss_pred CCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHH
Q psy16199 716 NFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
++|||++|||.+++.+.+.++.| ||+|.+||+++. +|.|+++++++.
T Consensus 291 ~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la-dPd~~~k~~~g~ 338 (341)
T PF00724_consen 291 KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA-DPDLPNKAREGR 338 (341)
T ss_dssp SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH--TTHHHHHHHTT
T ss_pred CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh-CchHHHHHHcCC
Confidence 79999999999999999999976 999999999995 599999998764
No 147
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.40 E-value=2.2e-12 Score=149.85 Aligned_cols=139 Identities=20% Similarity=0.324 Sum_probs=92.0
Q ss_pred eecceeEeecC-CCCcccccc------------------------C---------CCCCCCHHHHHHHHHHHHhcCc--E
Q psy16199 24 LSKDLPDIERP-VAALPDSSE------------------------I---------PQYRLPFDAVNFEVELVKDLGV--K 67 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~------------------------i---------P~~~~~~~~v~~~~~~l~~~gV--~ 67 (842)
.|++|++|||+ .+||++++. . |.|....++.+|...+++++++ .
T Consensus 23 ~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~ 102 (531)
T PF00743_consen 23 EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKH 102 (531)
T ss_dssp TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGG
T ss_pred CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcce
Confidence 59999999997 999998531 1 1222234788999999999886 3
Q ss_pred EEeceeecc------------ccceecc-c--cccCCCEEEEccCCCC-CCCCC--CCCCCccccC-ceehhcchHHHhh
Q psy16199 68 IECERSLST------------RDITIEK-L--RKDGYTAIFIGIGKPN-ANVIP--IFQGLTEEMG-FYTSKTFLPRVAT 128 (842)
Q Consensus 68 i~~~~~v~~------------~~v~~~~-~--~~~~yd~lVlAtGs~~-~~~~~--i~~G~~~~~g-v~~~~~~l~~~~~ 128 (842)
+++++.|.. ..|+.+. + ....||+||+|||... |+.|. +| |++...| ++|+.+|-..
T Consensus 103 I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~-G~e~F~G~i~HS~~yr~~--- 178 (531)
T PF00743_consen 103 IRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP-GLEKFKGEIIHSKDYRDP--- 178 (531)
T ss_dssp EETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C-TGGGHCSEEEEGGG--TG---
T ss_pred EEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh-hhhcCCeeEEccccCcCh---
Confidence 788887642 1122221 1 1224999999999863 44442 66 7777766 7777777542
Q ss_pred cccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 129 SSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 129 ~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
....+| |+|||+|.+|+|+|.+|++. +++|++..|++.
T Consensus 179 ---------------~~f~gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~~ 217 (531)
T PF00743_consen 179 ---------------EPFKGKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRGA 217 (531)
T ss_dssp ---------------GGGTTSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC---
T ss_pred ---------------hhcCCCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEeccc
Confidence 234455 99999999999999999987 456999988874
No 148
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.38 E-value=7.7e-12 Score=131.62 Aligned_cols=182 Identities=18% Similarity=0.141 Sum_probs=131.6
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHH-----HHHHHHHhhCCccEE-
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVR-----NISLWVRSSVKIPFF- 636 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~-----~ii~~v~~~~~~Pv~- 636 (842)
..+|.-+++|+ +.++|.++++.++++ +|+||||++||+.... |..+.+..+... ++++++++.+++|+.
T Consensus 4 ~~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~ad---G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~l 79 (244)
T PRK13125 4 PGLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYD---GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIIL 79 (244)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCC---CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEE
Confidence 45788888887 789999999999987 9999999999975432 455556666666 799999988899974
Q ss_pred -EEecCChhcHHHHHHHHHHCCCCEEEEecCCC-----------------ccccCCCCC-CC----CCcccC-CC---cc
Q psy16199 637 -VKLTPNITNITDIAKAAYEGKADGVSAINTVS-----------------GLMSLSADG-NP----WPAVGT-KK---LT 689 (842)
Q Consensus 637 -vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~-----------------~~~~~~~~~-~~----~p~~~~-~~---~~ 689 (842)
+|++|...+..++++.+.++|+|+|+++-... -...+-+.. ++ .+.+.. .+ .+
T Consensus 80 M~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~ms 159 (244)
T PRK13125 80 MTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYG 159 (244)
T ss_pred EEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 89998666888999999999999999862110 000000110 00 000000 00 02
Q ss_pred ccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 690 TYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 690 ~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
..||. |....+...+.++++++..++.||+.-|||++++++.+++.+|||+|-+||+++.
T Consensus 160 v~~~~-g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 160 LRPAT-GVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred eCCCC-CCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 23333 3344556677899999887668999999999999999999999999999999984
No 149
>KOG2334|consensus
Probab=99.37 E-value=8.6e-12 Score=132.89 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=140.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEec--
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT-- 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~-- 640 (842)
.-+|.++. ..+++-..+.|+.+.. ....|++|++|| +.....|||+++..+|+.+..|+..+.+..++|+.+|++
T Consensus 82 ~rlilQ~g-T~sa~lA~e~A~lv~n-DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L 159 (477)
T KOG2334|consen 82 SRLILQIG-TASAELALEAAKLVDN-DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL 159 (477)
T ss_pred CeEEEEec-CCcHHHHHHHHHHhhc-ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec
Confidence 46888884 5678888888888876 688999999999 777889999999999999999999999999999999996
Q ss_pred CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEE
Q psy16199 641 PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPIL 720 (842)
Q Consensus 641 p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi 720 (842)
++.++..++.+.+...|+.+|.++.++... +.-+|.....++++++.++.+|||
T Consensus 160 ~s~edtL~lv~ri~~tgi~ai~vh~rt~d~--------------------------r~~~~~~~~~i~~i~~~~~~V~vi 213 (477)
T KOG2334|consen 160 DSKEDTLKLVKRICATGIAAITVHCRTRDE--------------------------RNQEPATKDYIREIAQACQMVPVI 213 (477)
T ss_pred CCcccHHHHHHHHHhcCCceEEEEeecccc--------------------------CCCCCCCHHHHHHHHHHhccceEe
Confidence 345588899999999999999998764421 222566688999999998679999
Q ss_pred EecCcCC---HHHHHHHHH-hCCCEEEEehhhhccCchhHH
Q psy16199 721 GIGGIDS---ADVALQFIQ-AGAHAVQICSAVQNQDFTVVD 757 (842)
Q Consensus 721 ~~GGI~t---~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~ 757 (842)
.+||+.+ ..|+..+.+ .|++.||+++++. .+|.+|.
T Consensus 214 ~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~-~n~SiF~ 253 (477)
T KOG2334|consen 214 VNGGSMDIEQYSDIEDFQEKTGADSVMIARAAE-SNPSIFR 253 (477)
T ss_pred eccchhhHHhhhhHHHHHHHhccchhhhhHhhh-cCCceee
Confidence 9999998 888988887 8999999999998 4566653
No 150
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.35 E-value=2.8e-11 Score=135.61 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHhhCC-ccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCC
Q psy16199 615 QDPEMVRNISLWVRSSVK-IPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG 693 (842)
++++.+.++++++|+.++ +||++|+.+.. +..+++++++..|+|+|+++|+-+++-... ... ...+|
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~-----~~~-----~~~~g- 263 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFITIDGAEGGTGAAP-----LTF-----IDHVG- 263 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-CHHHHHHHHHHcCCCEEEEeCCCCCCCCCc-----ccc-----cccCC-
Confidence 678899999999999998 99999999864 677899999999999999999855431100 000 00111
Q ss_pred CCCCccccchHHHHHHHHhhC---CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc-------------------
Q psy16199 694 VSGNATRPMGLKAVSSIAKMF---PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ------------------- 751 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~i~~~~---~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~------------------- 751 (842)
+ +. -.++..+.+..... .++|||++|||.++.|+.++|++||++|+++|++|+.
T Consensus 264 ~---pt-~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Gia 339 (392)
T cd02808 264 L---PT-ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVA 339 (392)
T ss_pred c---cH-HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccc
Confidence 1 11 12344443333222 2599999999999999999999999999999999942
Q ss_pred --------------C----chhHHHHHHHHHHHHHhcCC-CccccC
Q psy16199 752 --------------D----FTVVDDYITGLQTLLYLKST-QLKGWD 778 (842)
Q Consensus 752 --------------g----p~~~~~i~~~l~~~m~~~g~-~i~~~~ 778 (842)
+ ..+++.+.++|+.+|...|+ +++++.
T Consensus 340 t~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~ 385 (392)
T cd02808 340 TQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLG 385 (392)
T ss_pred cCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCC
Confidence 1 45678889999999999999 887775
No 151
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.34 E-value=7.7e-11 Score=126.47 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=105.1
Q ss_pred ceEEEeccCCCHhHHHHHHHHHhhcC--cCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 565 ILIASIMCTYNKDDWLELSKKTEKAG--ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 565 pvi~si~~g~~~e~~~~~a~~~~~ag--aD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
++.+++ |.+++++.++.+.++. | +|+|.+..+ | -+.+.+.+.++++++.++.|.++|= +
T Consensus 84 ~v~~Sv--G~t~e~~~r~~~lv~a-~~~~d~i~~D~a--h------------g~s~~~~~~i~~i~~~~p~~~vi~G--n 144 (321)
T TIGR01306 84 FASISV--GVKACEYEFVTQLAEE-ALTPEYITIDIA--H------------GHSNSVINMIKHIKTHLPDSFVIAG--N 144 (321)
T ss_pred EEEEEc--CCCHHHHHHHHHHHhc-CCCCCEEEEeCc--c------------CchHHHHHHHHHHHHhCCCCEEEEe--c
Confidence 344555 7889999888888764 7 799988642 2 2346788999999998876644332 2
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
+ ...+.|+.|.++|+|+|.++|..++.-..++. ... |..+ ..+..+.++++.. ++|||+.
T Consensus 145 V-~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~------------~g~-g~~~-----~~l~ai~ev~~a~-~~pVIad 204 (321)
T TIGR01306 145 V-GTPEAVRELENAGADATKVGIGPGKVCITKIK------------TGF-GTGG-----WQLAALRWCAKAA-RKPIIAD 204 (321)
T ss_pred C-CCHHHHHHHHHcCcCEEEECCCCCccccceee------------ecc-CCCc-----hHHHHHHHHHHhc-CCeEEEE
Confidence 2 24677999999999999998654432111111 001 1111 1256788888887 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
|||+++.|+.++|++|||+||+|+.|-
T Consensus 205 GGIr~~~Di~KALa~GAd~Vmig~~~a 231 (321)
T TIGR01306 205 GGIRTHGDIAKSIRFGASMVMIGSLFA 231 (321)
T ss_pred CCcCcHHHHHHHHHcCCCEEeechhhc
Confidence 999999999999999999999999885
No 152
>PLN02411 12-oxophytodienoate reductase
Probab=99.33 E-value=2.3e-11 Score=136.10 Aligned_cols=166 Identities=12% Similarity=0.106 Sum_probs=121.8
Q ss_pred HhHHHHHHHHHhhcCcCEEEEe---------ccCCCCCCC-CCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecCCh-
Q psy16199 576 KDDWLELSKKTEKAGADALELN---------LSCPHGMGE-RGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTPNI- 643 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN---------~scP~~~~~-~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~~- 643 (842)
.++|.++|+++.++|+|+|||| |-+|.+..+ ..||+++..+..++.|++++||++++ -.|.+|++|.-
T Consensus 164 i~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~ 243 (391)
T PLN02411 164 VEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAID 243 (391)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccc
Confidence 5789999999999999999998 448955443 44999999999999999999999974 25999999731
Q ss_pred ----------hcHHHHHHHHHHC------CCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHH
Q psy16199 644 ----------TNITDIAKAAYEG------KADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAV 707 (842)
Q Consensus 644 ----------~~~~~~a~~~~~~------G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v 707 (842)
++..++++.+++. |+|.|.++...... .... .+ ... +..+ ....+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~--~~~~---~~-------~~~-~~~~-----~~~~~a 305 (391)
T PLN02411 244 HLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTA--YGQT---ES-------GRH-GSEE-----EEAQLM 305 (391)
T ss_pred ccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccc--cCCC---cc-------ccc-CCcc-----chhHHH
Confidence 2245677777653 58888886431100 0000 00 000 0000 113456
Q ss_pred HHHHhhCCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHH
Q psy16199 708 SSIAKMFPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 708 ~~i~~~~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
+++++.+ ++|||++|+| +.+++.+.|..| ||+|.++|+++. +|.|+++++++
T Consensus 306 ~~ik~~v-~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia-dPdl~~k~~~g 358 (391)
T PLN02411 306 RTLRRAY-QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS-NPDLVLRFKLN 358 (391)
T ss_pred HHHHHHc-CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh-CccHHHHHhcC
Confidence 7888888 7999999999 679999999988 999999999995 59999999775
No 153
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.28 E-value=2.8e-11 Score=125.35 Aligned_cols=176 Identities=21% Similarity=0.207 Sum_probs=120.7
Q ss_pred HHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCC
Q psy16199 580 LELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKAD 659 (842)
Q Consensus 580 ~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d 659 (842)
.++++.++++|+|.|.+|.+||......| |.+.+++|+.+. ++++.+++||+.|..-+. ..=|+.|++.|+|
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g-g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ---~~Ea~~L~~~GvD 98 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG-GVARMADPKMIE----EIMDAVSIPVMAKARIGH---FVEAQILEALGVD 98 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC-CeeecCCHHHHH----HHHHhCCCCeEEeehhhH---HHHHHHHHHcCCC
Confidence 45678888999999999999997666666 899999998876 777788999999997642 3447899999999
Q ss_pred EEEEecCCCcccc-CCCCC--CCCCcccCC------------C----ccc------------------------cCCCCC
Q psy16199 660 GVSAINTVSGLMS-LSADG--NPWPAVGTK------------K----LTT------------------------YGGVSG 696 (842)
Q Consensus 660 ~i~v~nt~~~~~~-~~~~~--~~~p~~~~~------------~----~~~------------------------~gG~sG 696 (842)
.|..|....+... +.+.. -..|.+-.- + ++. .-||..
T Consensus 99 iID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~ 178 (293)
T PRK04180 99 YIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSE 178 (293)
T ss_pred EEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCH
Confidence 9988765433111 00000 011111000 0 011 112211
Q ss_pred Cc------cccchHHHHHHHHhhCCCCcEE--EecCcCCHHHHHHHHHhCCCEEEEehhhhccC-c-hhHHHHHHHHH
Q psy16199 697 NA------TRPMGLKAVSSIAKMFPNFPIL--GIGGIDSADVALQFIQAGAHAVQICSAVQNQD-F-TVVDDYITGLQ 764 (842)
Q Consensus 697 ~~------~~p~al~~v~~i~~~~~~ipIi--~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g-p-~~~~~i~~~l~ 764 (842)
.. .....++.++++++.. ++||+ +.|||.|++|+.+++.+||++|.|+|+++... | ...+.+.+.+.
T Consensus 179 ~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 179 DELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred HHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 11 1234578889998887 69998 99999999999999999999999999998432 2 33444444444
No 154
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.23 E-value=1.4e-10 Score=128.20 Aligned_cols=254 Identities=15% Similarity=0.192 Sum_probs=149.2
Q ss_pred ccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeee
Q psy16199 346 VDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNI 425 (842)
Q Consensus 346 ~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~ 425 (842)
.+|+++++|++|+||+++||+ +..+++.+++..++|||++|+||++.+|.. +|+.||+.+. |+..|++|.
T Consensus 47 ~~L~~~~~Gl~l~nPi~~AsG-~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~-gn~~pr~~~~--------~~~~~~~N~ 116 (344)
T PRK05286 47 PRLPVTVMGLTFPNPVGLAAG-FDKNGEAIDALGALGFGFVEVGTVTPRPQP-GNPKPRLFRL--------PEDEALINR 116 (344)
T ss_pred CCCceEECCEECCCCCEECCC-CCCChHHHHHHHHcCCCEEEeCCcCCCCCC-CCCCCCEEec--------ccccccccC
Confidence 458999999999999999887 667889999999999999999999998775 8999998653 234689999
Q ss_pred EeecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccC-CCCCCCCCChhHHHHhhhhhhCcccccccc
Q psy16199 426 ELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQN-GLPKRQINTPVETILSVKDVIGQAVQRVTN 504 (842)
Q Consensus 426 e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~ 504 (842)
..++...++.|+ +. +++.+ ..-||+++= +.+...-....+.+..+.+.++- +
T Consensus 117 ~gl~n~g~~~~~---~~--------------l~~~~----~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~--~---- 169 (344)
T PRK05286 117 MGFNNDGADALA---ER--------------LKKAY----RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP--Y---- 169 (344)
T ss_pred CCCCCHhHHHHH---HH--------------HHHhc----CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh--h----
Confidence 888888788777 43 33332 234566542 22110000011222222211110 0
Q ss_pred CccCCCcceeEeeccCCccccCCccccCCCcc-chhhhhcCcccccccccccccccc-cc-----ccceEEEeccCCCHh
Q psy16199 505 YTELDNKKQVVALINDDMCINCGKCYMACNDS-GYQAITFHPETHQAHVTDECTGCT-LC-----LSILIASIMCTYNKD 577 (842)
Q Consensus 505 ~~~~~n~~~~~~~~~~~~~in~~~c~~Gfn~~-G~dai~~~~~~~~~~~~~~~~~~~-~~-----~~pvi~si~~g~~~e 577 (842)
.|--.+| ++|.|. |... ...++. ..+..+.++ .. +.||++-+....+.+
T Consensus 170 --------------ad~lelN-----~scP~~~g~~~-~~~~~~----~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~ 225 (344)
T PRK05286 170 --------------ADYFTVN-----ISSPNTPGLRD-LQYGEA----LDELLAALKEAQAELHGYVPLLVKIAPDLSDE 225 (344)
T ss_pred --------------CCEEEEE-----ccCCCCCCccc-ccCHHH----HHHHHHHHHHHHhccccCCceEEEeCCCCCHH
Confidence 0000112 122221 1000 000100 000011111 11 279999997555567
Q ss_pred HHHHHHHHHhhcCcCEEEEeccCCCC-----C-CCCCCcccCC-CCHHHHHHHHHHHHhhC--CccEEEEecCChhcHHH
Q psy16199 578 DWLELSKKTEKAGADALELNLSCPHG-----M-GERGMGLACG-QDPEMVRNISLWVRSSV--KIPFFVKLTPNITNITD 648 (842)
Q Consensus 578 ~~~~~a~~~~~agaD~ielN~scP~~-----~-~~~~~G~~~~-~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~~~~~~~ 648 (842)
++.++++.++++|+|+|.+.-..+.. . ...+.|.--+ .......+.++.+++.+ ++||+. ...+.+..+
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig--~GGI~s~ed 303 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIG--VGGIDSAED 303 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEE--ECCCCCHHH
Confidence 89999999999999999996432210 0 0011111111 11234556788888887 688764 556777777
Q ss_pred HHHHHHHCCCCEEEE
Q psy16199 649 IAKAAYEGKADGVSA 663 (842)
Q Consensus 649 ~a~~~~~~G~d~i~v 663 (842)
+.+.+. +|||+|-+
T Consensus 304 a~e~l~-aGAd~V~v 317 (344)
T PRK05286 304 AYEKIR-AGASLVQI 317 (344)
T ss_pred HHHHHH-cCCCHHHH
Confidence 777776 99998876
No 155
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.22 E-value=8.1e-10 Score=120.82 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=92.1
Q ss_pred CCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~ 651 (842)
+.+++ ..+.++.+.++|+|.|++|++.- +++.+.++++++++.. ++||++ .++.. .+.|+
T Consensus 90 ~~~~~-~~~~~~~l~eagv~~I~vd~~~G--------------~~~~~~~~i~~ik~~~p~v~Vi~---G~v~t-~~~A~ 150 (325)
T cd00381 90 GTRED-DKERAEALVEAGVDVIVIDSAHG--------------HSVYVIEMIKFIKKKYPNVDVIA---GNVVT-AEAAR 150 (325)
T ss_pred CCChh-HHHHHHHHHhcCCCEEEEECCCC--------------CcHHHHHHHHHHHHHCCCceEEE---CCCCC-HHHHH
Confidence 33444 45556666668999999987331 2256778899999876 378877 33322 46688
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC--CCcEEEecCcCCHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP--NFPILGIGGIDSAD 729 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~--~ipIi~~GGI~t~~ 729 (842)
.+.++|+|+|++...-++. . ..+...| .|.+ .+..+.++++... ++|||+.|||.++.
T Consensus 151 ~l~~aGaD~I~vg~g~G~~-----~---------~t~~~~g--~g~p----~~~~i~~v~~~~~~~~vpVIA~GGI~~~~ 210 (325)
T cd00381 151 DLIDAGADGVKVGIGPGSI-----C---------TTRIVTG--VGVP----QATAVADVAAAARDYGVPVIADGGIRTSG 210 (325)
T ss_pred HHHhcCCCEEEECCCCCcC-----c---------ccceeCC--CCCC----HHHHHHHHHHHHhhcCCcEEecCCCCCHH
Confidence 8999999999984321110 0 0000111 1222 2445555544332 59999999999999
Q ss_pred HHHHHHHhCCCEEEEehhhh
Q psy16199 730 VALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 730 da~~~l~~GA~~Vqv~ta~l 749 (842)
|+.+++++||++||+||.|.
T Consensus 211 di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 211 DIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred HHHHHHHcCCCEEEecchhc
Confidence 99999999999999999987
No 156
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.18 E-value=2e-10 Score=125.60 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCC
Q psy16199 615 QDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGV 694 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~ 694 (842)
.+|...++.+.++++.+..|+++|-.-+..| ++.+-+.|+++|.++|.-+ +..-+|
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D----~~~a~~tg~~~I~vsnhgg-------------------rqlD~g- 256 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKGILAPED----AAGAGGTGADGIEVSNHGG-------------------RQLDWG- 256 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhCCCCHHH----HHhhccCCceEEEEEcCCC-------------------ccccCC-
Confidence 5677888889999999999999886554333 6778889999999999633 111122
Q ss_pred CCCccccchHHHHHHHHhhCCC-CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc----cC----chhHHHHHHHHHH
Q psy16199 695 SGNATRPMGLKAVSSIAKMFPN-FPILGIGGIDSADVALQFIQAGAHAVQICSAVQN----QD----FTVVDDYITGLQT 765 (842)
Q Consensus 695 sG~~~~p~al~~v~~i~~~~~~-ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~----~g----p~~~~~i~~~l~~ 765 (842)
+.+.+.+.++++.+++ ++|+++|||+++.|+.++|++||++|.+++++++ .| -..++.|.++|+.
T Consensus 257 ------~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~ 330 (360)
T COG1304 257 ------ISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKI 330 (360)
T ss_pred ------CChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3348888899999874 9999999999999999999999999999999994 12 4568889999999
Q ss_pred HHHhcCC-CccccCCC
Q psy16199 766 LLYLKST-QLKGWDGQ 780 (842)
Q Consensus 766 ~m~~~g~-~i~~~~~~ 780 (842)
.|.+.|+ +|+|+...
T Consensus 331 ~M~L~G~~~i~el~~~ 346 (360)
T COG1304 331 AMALTGAKNIEELKRV 346 (360)
T ss_pred HHHhcCCCcHHHhccC
Confidence 9999999 99999754
No 157
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.18 E-value=7e-10 Score=112.48 Aligned_cols=142 Identities=22% Similarity=0.157 Sum_probs=104.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~ 642 (842)
.|+++++......+.+...++.+.++|+|+|++|.+||+. ++...++++++++.. ++|+++|+.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 58 LPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred CcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 6899999754333444445677888899999999999853 678889999999887 89999999875
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
.... . + .+.+.|+|.|.+.|....... ... .+.....+..+++.. ++||+++
T Consensus 125 ~~~~-~-~-~~~~~g~d~i~~~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~~~-~~pi~~~ 176 (200)
T cd04722 125 GELA-A-A-AAEEAGVDEVGLGNGGGGGGG-----------------------RDA-VPIADLLLILAKRGS-KVPVIAG 176 (200)
T ss_pred Cccc-h-h-hHHHcCCCEEEEcCCcCCCCC-----------------------ccC-chhHHHHHHHHHhcC-CCCEEEE
Confidence 4321 1 1 178899999999776432100 000 111234455555554 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEeh
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICS 746 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~t 746 (842)
|||.+++++.+++++||++|+++|
T Consensus 177 GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 177 GGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCCCHHHHHHHHHhCCCEEEecC
Confidence 999999999999999999999986
No 158
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.12 E-value=2.5e-09 Score=117.98 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=106.1
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAY 654 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~ 654 (842)
++.++.+.++.+.++|+|+|.++........... ..++..+.++ +++ .++||++. ++.. .+.|+.+.
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~-----~~~~~~i~~~---ik~-~~ipVIaG---~V~t-~e~A~~l~ 205 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSK-----EGEPLNLKEF---IYE-LDVPVIVG---GCVT-YTTALHLM 205 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCC-----cCCHHHHHHH---HHH-CCCCEEEe---CCCC-HHHHHHHH
Confidence 4667889999999999999999864321111011 0144444333 333 58999883 2333 34567777
Q ss_pred HCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh---h----C--CCCcEEEecCc
Q psy16199 655 EGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK---M----F--PNFPILGIGGI 725 (842)
Q Consensus 655 ~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~---~----~--~~ipIi~~GGI 725 (842)
++|+|+|.+... .+. . ..+ +...| .| .| .+..+.++++ . . .++|||+.|||
T Consensus 206 ~aGAD~V~VG~G-~Gs--~--~~t---------~~~~g--~g---~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI 265 (368)
T PRK08649 206 RTGAAGVLVGIG-PGA--A--CTS---------RGVLG--IG---VP-MATAIADVAAARRDYLDETGGRYVHVIADGGI 265 (368)
T ss_pred HcCCCEEEECCC-CCc--C--CCC---------cccCC--CC---cC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCC
Confidence 899999977321 110 0 000 00011 01 12 1333333322 1 1 14899999999
Q ss_pred CCHHHHHHHHHhCCCEEEEehhhhc------------------------------cCc--hhHH----------HHHHHH
Q psy16199 726 DSADVALQFIQAGAHAVQICSAVQN------------------------------QDF--TVVD----------DYITGL 763 (842)
Q Consensus 726 ~t~~da~~~l~~GA~~Vqv~ta~l~------------------------------~gp--~~~~----------~i~~~l 763 (842)
.++.|+.++|++||++||+||.|.. .|+ .++. ++..+|
T Consensus 266 ~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l 345 (368)
T PRK08649 266 GTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGAL 345 (368)
T ss_pred CCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHH
Confidence 9999999999999999999999982 111 2233 667788
Q ss_pred HHHHHhcCC-CccccCC
Q psy16199 764 QTLLYLKST-QLKGWDG 779 (842)
Q Consensus 764 ~~~m~~~g~-~i~~~~~ 779 (842)
+.-|...|+ +|.|++.
T Consensus 346 ~~~m~~~g~~~~~~~~~ 362 (368)
T PRK08649 346 RRSMATLGYSDLKEFQK 362 (368)
T ss_pred HHHHHhcCCCcHHHHhh
Confidence 888888888 8877753
No 159
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.08 E-value=8.4e-09 Score=113.44 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAY 654 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~ 654 (842)
++..+.++++.++++|+|+|.++-..-..+...+ ..++..+.++++ ..++||++ .++.+ .+.++.+.
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg-----~~~p~~l~~~i~----~~~IPVI~---G~V~t-~e~A~~~~ 206 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVST-----SGEPLNLKEFIG----ELDVPVIA---GGVND-YTTALHLM 206 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCC-----CCCHHHHHHHHH----HCCCCEEE---eCCCC-HHHHHHHH
Confidence 4568889999999999999999732211111011 134554444443 45899998 23333 34466666
Q ss_pred HCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh----hCC--CCcEEEecCcCCH
Q psy16199 655 EGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK----MFP--NFPILGIGGIDSA 728 (842)
Q Consensus 655 ~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~----~~~--~ipIi~~GGI~t~ 728 (842)
+.|+|+|.+... +... + +...| .+.+ ...++.-+...++ +.. .+|||+.|||.++
T Consensus 207 ~aGaDgV~~G~g-g~~~------~---------~~~lg--~~~p-~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg 267 (369)
T TIGR01304 207 RTGAAGVIVGPG-GANT------T---------RLVLG--IEVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIETS 267 (369)
T ss_pred HcCCCEEEECCC-CCcc------c---------ccccC--CCCC-HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCH
Confidence 799999984322 1110 0 00000 1111 1112222222222 222 3999999999999
Q ss_pred HHHHHHHHhCCCEEEEehhhh
Q psy16199 729 DVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 729 ~da~~~l~~GA~~Vqv~ta~l 749 (842)
.|+.++|++||++||+||+|+
T Consensus 268 ~di~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 268 GDLVKAIACGADAVVLGSPLA 288 (369)
T ss_pred HHHHHHHHcCCCEeeeHHHHH
Confidence 999999999999999999999
No 160
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.07 E-value=8.4e-09 Score=112.56 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=140.7
Q ss_pred CCCEEEEccCCCC--CCCCCCCCCCccccCceehhcchHHHhhcccCC----ccCCCCCCCCCCCCCc---EEEEcCCh-
Q psy16199 88 GYTAIFIGIGKPN--ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKG----LCGGCKKESLPILKGT---VIVLGAGD- 157 (842)
Q Consensus 88 ~yd~lVlAtGs~~--~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~----~c~~c~~~~~~~~~~k---VvVIGgG~- 157 (842)
...++|+|||-.. +....-. |+..+++|+|..++-+.++.. ... .. -.+ -..+++ +--+|+-+
T Consensus 300 ~vGaIIvAtGy~~~Da~~k~Ey-GYG~~~nVIT~lElErml~~~-GPT~Gkvlr-pSd----g~~pKrVaFIqCVGSRD~ 372 (622)
T COG1148 300 EVGAIIVATGYKPFDATRKEEY-GYGKYPNVITNLELERMLNPN-GPTGGKVLR-PSD----GKPPKRVAFIQCVGSRDF 372 (622)
T ss_pred EeceEEEEccccccCcchhhhc-CCCCCcchhhHHHHHHHhccC-CCCCceEEe-cCC----CCCCceEEEEEEecCcCc
Confidence 4778999999762 2222222 555678899988887776432 000 00 001 234445 34567766
Q ss_pred -------hHHHHHHHHH------HcC-CcEEEEEEeecCccccCCHHHHHHHH-hcCcEEecCCCceEEEccCCcEEEEE
Q psy16199 158 -------TAFDCATSAL------RCG-ANKVLVVFRKGCTNIRAVPEEVQLAW-EEKCEFLPFMSPVQVDVKDNKIAGMQ 222 (842)
Q Consensus 158 -------~g~e~A~~l~------~~G-~~~Vtlv~r~~~~~~~~~~~~~~~~~-~~gV~i~~~~~v~~v~~~~~~v~~V~ 222 (842)
+-+-|+..|. ++. -.+|++++.+-+..-...++...+.+ +.||+++.+ ++.+|....+....|.
T Consensus 373 ~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~ 451 (622)
T COG1148 373 QVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVR 451 (622)
T ss_pred ccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeEEE
Confidence 1222333322 221 12589998876544434555556665 679999877 6666654333333466
Q ss_pred EEeecccCCCCeeccCCceEEEECCEEEEccccCcCC--hhHHhhcCCcccCCCCCeeeCCCC---CCCCCCCeEEeccC
Q psy16199 223 FNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD--NDVLEAIKPVKLDKYGYPEVNYTT---MATSVPGVFCGGDT 297 (842)
Q Consensus 223 ~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~--~~l~~~l~gl~~~~~G~i~vd~~~---~~Ts~~gVfa~GD~ 297 (842)
.+++. .|+..++++|+|++++|+.|.. ..+.+.+ ||+.+++|+++..... ..|+.+|||.+|-+
T Consensus 452 ~EdTl----------~g~~~e~~~DLVVLa~Gmep~~g~~kia~iL-gL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a 520 (622)
T COG1148 452 VEDTL----------TGEVKEIEADLVVLATGMEPSEGAKKIAKIL-GLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA 520 (622)
T ss_pred EEecc----------CccceecccceEEEeeccccCcchHHHHHhc-CcccCCCCccccCCCCcccccccCCcEEEeecc
Confidence 66653 4667789999999999999532 3455556 9999999998766333 35799999999966
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 298 ANLSDTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 298 ~~~~~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
. +|..+..+++||..||.....++..
T Consensus 521 q-gPkdI~~siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 521 Q-GPKDIADSIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred c-CCccHHHHHHHhHHHHHHHHHHhhc
Confidence 5 6899999999999999999888753
No 161
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.03 E-value=4.5e-10 Score=114.58 Aligned_cols=139 Identities=25% Similarity=0.442 Sum_probs=94.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccc--cCCH--------------------HHHHHHHhcCcEEecCC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI--RAVP--------------------EEVQLAWEEKCEFLPFM 206 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~--~~~~--------------------~~~~~~~~~gV~i~~~~ 206 (842)
+|+|||||+.|+.+|..|.+.+.+ |+++.+.+.... .... ...+.+...+++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~-v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK-VLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe-EEEEecccccccccccccccccccccccccccccccccccccccccceEEEeecc
Confidence 489999999999999999999875 999965431100 0000 11122346799998888
Q ss_pred CceEEEccCCcEE--EEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCCh------------------------
Q psy16199 207 SPVQVDVKDNKIA--GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN------------------------ 260 (842)
Q Consensus 207 ~v~~v~~~~~~v~--~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~------------------------ 260 (842)
.+.++......+. .+.+... .+++..++.+|.||+|+|..|...
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 149 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVV----------ETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELL 149 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEE----------ETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHS
T ss_pred ccccccccccccccCcccceee----------ccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccc
Confidence 9999875544331 0111110 134567899999999999873211
Q ss_pred -----------hHH-hhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCCC
Q psy16199 261 -----------DVL-EAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANL 300 (842)
Q Consensus 261 -----------~l~-~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~ 300 (842)
.++ +.+ |++++++|++.|| ++++|+.|+|||+|||+..
T Consensus 150 ~~~~~v~VvG~~~l~~~~-~~~~~~~g~i~vd-~~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 150 ESPKRVAVVGTEFLAEKL-GVELDENGFIKVD-ENLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp STTSEEEEESTTTSTHHT-TSTBTTTSSBEEB-TTSBBSSTTEEE-GGGBEE
T ss_pred cccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc
Confidence 001 233 6788889999999 5899999999999999854
No 162
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.02 E-value=1.7e-10 Score=118.04 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=83.4
Q ss_pred eeeecc-eeEeecC-CCCccccc-----------------cCCCC-----------------CCCHHHHHHHHHHHHhcC
Q psy16199 22 VCLSKD-LPDIERP-VAALPDSS-----------------EIPQY-----------------RLPFDAVNFEVELVKDLG 65 (842)
Q Consensus 22 ~~~g~~-V~l~Ek~-~~GG~~~~-----------------~iP~~-----------------~~~~~~v~~~~~~l~~~g 65 (842)
...|.+ |+|+||. .+||.+.. +.|.+ ....++.++...++++++
T Consensus 17 ~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~ 96 (203)
T PF13738_consen 17 LERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFG 96 (203)
T ss_dssp HHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTT
T ss_pred HhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcC
Confidence 344778 9999997 99997631 11111 011266677888888999
Q ss_pred cEEEeceeecc-------ccceeccccccCCCEEEEccCCC-CCCCCCCCCCCccccCceehhcchHHHhhcccCCccCC
Q psy16199 66 VKIECERSLST-------RDITIEKLRKDGYTAIFIGIGKP-NANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGG 137 (842)
Q Consensus 66 V~i~~~~~v~~-------~~v~~~~~~~~~yd~lVlAtGs~-~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~ 137 (842)
+++++++.|.. ..+++++...+.+|+||+|||.. .|+.+++| | .....++++.++.+.
T Consensus 97 l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~-g-~~~~~~~h~~~~~~~------------ 162 (203)
T PF13738_consen 97 LEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIP-G-SAFRPIIHSADWRDP------------ 162 (203)
T ss_dssp GGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-T-T-GGCSEEEEGGG-STT------------
T ss_pred cccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccc-c-ccccceEehhhcCCh------------
Confidence 99999887743 12455555455699999999973 47777777 4 122345555444321
Q ss_pred CCCCCCCCCCCc-EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 138 CKKESLPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 138 c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
....++ |+|||+|.+|+|+|..|++.| ++|+++.|++
T Consensus 163 ------~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R~~ 200 (203)
T PF13738_consen 163 ------EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTRSP 200 (203)
T ss_dssp ------GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEESS-
T ss_pred ------hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEecCC
Confidence 223344 999999999999999999998 6799999986
No 163
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.02 E-value=1.9e-09 Score=118.22 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=69.9
Q ss_pred ceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEe
Q psy16199 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIEL 427 (842)
Q Consensus 348 L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~ 427 (842)
|+++++|++|+||+++||+ ++.+++.++...+.|||++|+||++.+|.. +|++||+.+. |+..+++|...
T Consensus 46 L~~~~~Gl~l~NPi~lAsG-~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~-gn~~Pr~~~~--------~~~~~~iN~~G 115 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAAG-FDKDGEAIDALGAMGFGFLEIGTVTPKPQP-GNPRPRLFRL--------IEDEALINRMG 115 (335)
T ss_pred CcEEECCEECCCCcEeCCc-cCCCHHHHHHHHhcCCCEEEeCCcCCCCCC-CCCCCCEEEC--------ccccccccCCC
Confidence 8999999999999999887 678899999999999999999999988765 8999998653 23468999988
Q ss_pred ecccchhhHH
Q psy16199 428 ISEKTAFIFF 437 (842)
Q Consensus 428 ~s~~~~~~~~ 437 (842)
++...++.|+
T Consensus 116 l~n~G~~~~l 125 (335)
T TIGR01036 116 FNNHGADVLV 125 (335)
T ss_pred CCChhHHHHH
Confidence 8888888887
No 164
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.01 E-value=5.5e-09 Score=113.36 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=101.4
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
+|+-+++... ...+.+..+.+.+.+++.|.++++.|. ++++.+++. +++|+..++.
T Consensus 63 ~pfgvn~~~~--~~~~~~~~~~~~~~~v~~v~~~~g~p~-------------------~~i~~lk~~-g~~v~~~v~s-- 118 (307)
T TIGR03151 63 KPFGVNIMLL--SPFVDELVDLVIEEKVPVVTTGAGNPG-------------------KYIPRLKEN-GVKVIPVVAS-- 118 (307)
T ss_pred CCcEEeeecC--CCCHHHHHHHHHhCCCCEEEEcCCCcH-------------------HHHHHHHHc-CCEEEEEcCC--
Confidence 6777777532 233556666666679999998654441 466777765 6777765532
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.+.++.+++.|+|+|++.++ ..||+.|.. ..+.++.++++.+ ++|||++|
T Consensus 119 ---~~~a~~a~~~GaD~Ivv~g~-----------------------eagGh~g~~---~~~~ll~~v~~~~-~iPviaaG 168 (307)
T TIGR03151 119 ---VALAKRMEKAGADAVIAEGM-----------------------ESGGHIGEL---TTMALVPQVVDAV-SIPVIAAG 168 (307)
T ss_pred ---HHHHHHHHHcCCCEEEEECc-----------------------ccCCCCCCC---cHHHHHHHHHHHh-CCCEEEEC
Confidence 45689999999999999653 245555532 3588999999988 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
||.+++|+.+++.+||++||+||.|+.-
T Consensus 169 GI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 169 GIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred CCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 9999999999999999999999999953
No 165
>KOG1799|consensus
Probab=99.00 E-value=3.8e-11 Score=124.35 Aligned_cols=150 Identities=52% Similarity=0.917 Sum_probs=133.8
Q ss_pred CCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC
Q psy16199 673 LSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752 (842)
Q Consensus 673 ~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g 752 (842)
+.-+.++||..+...++.+||+||.+++|++++.+..+.++.++.||.+.|+|.+++.-++++.-||++.||||++..+.
T Consensus 3 ~~~d~~~~~~~~~~~~t~~g~~~~tai~p~~l~~v~s~a~~~s~~~i~A~gdi~saeS~l~~~~~G~s~l~v~saiqs~~ 82 (471)
T KOG1799|consen 3 LKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTSIARALSGFPILATGDIDSAESGLQFLHSGASVLQVCSAIQSQD 82 (471)
T ss_pred cccCCceeeEeeeEEEeeccccchhhccchhHHHHHHHhhccCCceeeccCCcchhhhcCccccccHHHHHHHHHHhcCC
Confidence 33445678887777789999999999999999999999999988999999999999999999999999999999999776
Q ss_pred chhHHHHHHHHHHHHHhcCC-CccccCCCCCCCccccCCCCCCcchhhccCCCCCchhhHHHHHHHHHHHHh
Q psy16199 753 FTVVDDYITGLQTLLYLKST-QLKGWDGQSPPTPVHQKGKPAYQFRDKEGKAIPNFGEYKKIRENLITELNL 823 (842)
Q Consensus 753 p~~~~~i~~~l~~~m~~~g~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 823 (842)
..+++.. ++++.+++.+.. .+-||.|+.+++|.+++++|..+..++..++++....|...|...+.+-+.
T Consensus 83 ~~v~e~~-~~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV 153 (471)
T KOG1799|consen 83 FTVIEDY-TGLKALLYLKSIEELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKV 153 (471)
T ss_pred Ccccccc-cchhhhcchhhhhhhccccCccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhh
Confidence 5555555 999999999999 888999999999999999999999999999999999998888877666554
No 166
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.99 E-value=2.8e-09 Score=113.68 Aligned_cols=250 Identities=24% Similarity=0.293 Sum_probs=142.6
Q ss_pred ceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeEe
Q psy16199 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIEL 427 (842)
Q Consensus 348 L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e~ 427 (842)
++++++|++|+||+++||+....+++.+.+..+.|||++++||++.+|++ +|++||+.+.. ...+.+|.
T Consensus 2 l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~pq~-Gnp~PR~~~l~--------~~~~~iN~-- 70 (310)
T COG0167 2 LSTEILGLKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQE-GNPKPRLFRLP--------EDEGLINR-- 70 (310)
T ss_pred CceeecceecCCCCeEcccCCccCHHHHHHHHhcCCceEEecCCCCcCCC-CCCCCeEEEec--------CcccHHHh--
Confidence 56779999999999999999999999999999999999999999999886 99999998762 24678999
Q ss_pred ecccchhhHHhhhhcCCCCcchhhhHHHHHHhhccccccCCcccccCCCCCCCCCChhHHHHhhhhhhCccccccccCcc
Q psy16199 428 ISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQRVTNYTE 507 (842)
Q Consensus 428 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~~~g~vt~~~~ 507 (842)
++++|++--.- +++++..+..-.|+++-=+.-+. .-..+....+...+. +.+.
T Consensus 71 -------------mG~~N~G~~~~-----~~~l~~~~~~~~~~~~~i~~~~~--~~~~~~~~d~~~~~~-~~~~------ 123 (310)
T COG0167 71 -------------MGFNNPGADAF-----LEELKLAKYEGKPIGVNIGKNKG--GPSEEAWADYARLLE-EAGD------ 123 (310)
T ss_pred -------------cCCCchhHHHH-----HHHHHhhhhccCCcCcceEEecC--CCcHHHHHHHHHHHH-hcCC------
Confidence 99999993322 33332211122233332222222 000111222211100 0010
Q ss_pred CCCcceeEeeccCCccccCCccccCCCc-cchhhhhcCcccccccccccccccc-ccccceEEEeccCCCHhHHHHHHHH
Q psy16199 508 LDNKKQVVALINDDMCINCGKCYMACND-SGYQAITFHPETHQAHVTDECTGCT-LCLSILIASIMCTYNKDDWLELSKK 585 (842)
Q Consensus 508 ~~n~~~~~~~~~~~~~in~~~c~~Gfn~-~G~dai~~~~~~~~~~~~~~~~~~~-~~~~pvi~si~~g~~~e~~~~~a~~ 585 (842)
. +-=-+| ..|.| .|-..+...++. ..+-...++ .++.||++-|. -+.+++.++|+.
T Consensus 124 ---a--------d~ielN-----iScPnt~g~~~l~~~~e~----l~~l~~~vk~~~~~Pv~vKl~--P~~~di~~iA~~ 181 (310)
T COG0167 124 ---A--------DAIELN-----ISCPNTPGGRALGQDPEL----LEKLLEAVKAATKVPVFVKLA--PNITDIDEIAKA 181 (310)
T ss_pred ---C--------CEEEEE-----ccCCCCCChhhhccCHHH----HHHHHHHHHhcccCceEEEeC--CCHHHHHHHHHH
Confidence 0 000011 11221 010111100000 000011222 33489999993 489999999999
Q ss_pred HhhcCcCEEEE-ecc--CC----------CCCCCCCCcccCC-CCHHHHHHHHHHHHhhCC--ccEEEEecCChhcHHHH
Q psy16199 586 TEKAGADALEL-NLS--CP----------HGMGERGMGLACG-QDPEMVRNISLWVRSSVK--IPFFVKLTPNITNITDI 649 (842)
Q Consensus 586 ~~~agaD~iel-N~s--cP----------~~~~~~~~G~~~~-~~~~~~~~ii~~v~~~~~--~Pv~vKl~p~~~~~~~~ 649 (842)
+.++|+|+|.+ |.- -+ +....+|+ -| .-.....+++..+.+.++ +||+- ...+....+
T Consensus 182 ~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGL---SG~~ikp~al~~v~~l~~~~~~~ipIIG--vGGI~s~~D- 255 (310)
T COG0167 182 AEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGL---SGPPLKPIALRVVAELYKRLGGDIPIIG--VGGIETGED- 255 (310)
T ss_pred HHHcCCcEEEEEeeccccccccccccccccCcCCCCc---CcccchHHHHHHHHHHHHhcCCCCcEEE--ecCcCcHHH-
Confidence 99999999875 411 11 11112222 12 123456677888888865 89864 222333333
Q ss_pred HHHHHHCCCCEEEE
Q psy16199 650 AKAAYEGKADGVSA 663 (842)
Q Consensus 650 a~~~~~~G~d~i~v 663 (842)
|.....+||+.|-+
T Consensus 256 A~E~i~aGA~~vQv 269 (310)
T COG0167 256 ALEFILAGASAVQV 269 (310)
T ss_pred HHHHHHcCCchhee
Confidence 33445689998877
No 167
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.98 E-value=8.2e-08 Score=102.22 Aligned_cols=145 Identities=17% Similarity=0.094 Sum_probs=97.8
Q ss_pred eEEEeccCCCHhHHHHHHHHHhh-cCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEK-AGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT 644 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~-agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~ 644 (842)
+.+++ |..++++.++...++. .++|+|-|..+ | -..+.+.+.++++|+...-+.++|-+- .
T Consensus 98 ~~vsv--G~~~~d~er~~~L~~a~~~~d~iviD~A--h------------Ghs~~~i~~ik~ir~~~p~~~viaGNV--~ 159 (343)
T TIGR01305 98 VAVSS--GSSDNDLEKMTSILEAVPQLKFICLDVA--N------------GYSEHFVEFVKLVREAFPEHTIMAGNV--V 159 (343)
T ss_pred EEEEe--ccCHHHHHHHHHHHhcCCCCCEEEEECC--C------------CcHHHHHHHHHHHHhhCCCCeEEEecc--c
Confidence 34466 5678888887777664 25999999752 2 234678899999999886667776522 1
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC--CCcEEEe
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP--NFPILGI 722 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~--~ipIi~~ 722 (842)
. .+-|+.|.++|||+|.+.=..++. - + .+. +.|-. .| .+..+.++++... ++|||+-
T Consensus 160 T-~e~a~~Li~aGAD~ikVgiGpGSi-----c-t--------tR~----~~Gvg-~p-qltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 160 T-GEMVEELILSGADIVKVGIGPGSV-----C-T--------TRT----KTGVG-YP-QLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred C-HHHHHHHHHcCCCEEEEcccCCCc-----c-c--------Cce----eCCCC-cC-HHHHHHHHHHHhccCCCeEEEc
Confidence 1 355788999999999985100000 0 0 000 11111 11 3555666555442 6999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
|||+++-|+.++|++||++||+|+.+-
T Consensus 219 GGIr~~gDI~KALA~GAd~VMlG~llA 245 (343)
T TIGR01305 219 GGCTCPGDVAKAFGAGADFVMLGGMFA 245 (343)
T ss_pred CCcCchhHHHHHHHcCCCEEEECHhhh
Confidence 999999999999999999999997663
No 168
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.96 E-value=2.4e-08 Score=104.99 Aligned_cols=179 Identities=20% Similarity=0.213 Sum_probs=116.1
Q ss_pred eEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccC----------CCCHHHHHHHHHHHHhhCCcc
Q psy16199 566 LIASIMCTY-NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLAC----------GQDPEMVRNISLWVRSSVKIP 634 (842)
Q Consensus 566 vi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~----------~~~~~~~~~ii~~v~~~~~~P 634 (842)
+|.-+++|+ +.+.|.+.++.++++|+|+||+++ |.....-+ |..+ +.+.+...++++.+|+..++|
T Consensus 2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D-G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p 78 (242)
T cd04724 2 LIPYITAGDPDLETTLEILKALVEAGADIIELGI--PFSDPVAD-GPVIQAASERALANGVTLKDVLELVKEIRKKNTIP 78 (242)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC
Confidence 355666776 578999999999999999999997 42111111 1111 123457788999999888889
Q ss_pred EEE--EecCChh-cHHHHHHHHHHCCCCEEEEecC----------------CCccccCCCCCC--C-CCccc-CCC----
Q psy16199 635 FFV--KLTPNIT-NITDIAKAAYEGKADGVSAINT----------------VSGLMSLSADGN--P-WPAVG-TKK---- 687 (842)
Q Consensus 635 v~v--Kl~p~~~-~~~~~a~~~~~~G~d~i~v~nt----------------~~~~~~~~~~~~--~-~p~~~-~~~---- 687 (842)
+.+ +.+|.+. .+..+++.+.++|+++|++.-- +.....+...++ + .+... ..+
T Consensus 79 v~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~ 158 (242)
T cd04724 79 IVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYY 158 (242)
T ss_pred EEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEE
Confidence 766 7676444 2577888888888888887210 000000000000 0 00000 000
Q ss_pred ccccCCCCCCc-cccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 688 LTTYGGVSGNA-TRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 688 ~~~~gG~sG~~-~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
.+..|+..+.. ..+...+.++++++.. ++||+..|||.+.+++.+++.+ ||+|-+||+++
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 11233333333 3455678899999875 8999999999999999999999 99999999998
No 169
>KOG1399|consensus
Probab=98.96 E-value=1.5e-09 Score=122.65 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=92.1
Q ss_pred eecceeEeecC-CCCcccccc------------------------CCC---------C-CCCHHHHHHHHHHHHhcCc--
Q psy16199 24 LSKDLPDIERP-VAALPDSSE------------------------IPQ---------Y-RLPFDAVNFEVELVKDLGV-- 66 (842)
Q Consensus 24 ~g~~V~l~Ek~-~~GG~~~~~------------------------iP~---------~-~~~~~~v~~~~~~l~~~gV-- 66 (842)
.|++|++|||. .+||++.+. .|. + ....++++|+..+++++++
T Consensus 28 ~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~ 107 (448)
T KOG1399|consen 28 EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLK 107 (448)
T ss_pred CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhh
Confidence 49999999997 999997542 111 1 1223889999999999985
Q ss_pred EEEeceee---cc-----ccceeccc----cccCCCEEEEccCCCC-CCCCCCCCC--CccccC-ceehhcchHHHhhcc
Q psy16199 67 KIECERSL---ST-----RDITIEKL----RKDGYTAIFIGIGKPN-ANVIPIFQG--LTEEMG-FYTSKTFLPRVATSS 130 (842)
Q Consensus 67 ~i~~~~~v---~~-----~~v~~~~~----~~~~yd~lVlAtGs~~-~~~~~i~~G--~~~~~g-v~~~~~~l~~~~~~~ 130 (842)
.|++++.+ .. ..|...+. ...-||.|++|||... |+.+.++ | ++..+| ++|+.+|...
T Consensus 108 ~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~-g~~~~~f~G~~iHS~~Yk~~----- 181 (448)
T KOG1399|consen 108 MINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP-GPGIESFKGKIIHSHDYKSP----- 181 (448)
T ss_pred heEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC-CCchhhcCCcceehhhccCc-----
Confidence 35666632 11 11222211 2234999999999985 6766666 4 334554 6676666521
Q ss_pred cCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHHHHHHcCCcEEEEEEe
Q psy16199 131 KKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFR 179 (842)
Q Consensus 131 ~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r 179 (842)
....+| |+|||.|++|+|+|.++++.. +.|++..+
T Consensus 182 -------------e~f~~k~VlVIG~g~SG~DIs~d~~~~a-k~v~~~~~ 217 (448)
T KOG1399|consen 182 -------------EKFRDKVVLVVGCGNSGMDISLDLLRVA-KEVHLSVV 217 (448)
T ss_pred -------------ccccCceEEEECCCccHHHHHHHHHHhc-cCcceeee
Confidence 344555 999999999999999988874 55888765
No 170
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.96 E-value=1.8e-08 Score=111.55 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=100.3
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChh
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNIT 644 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~ 644 (842)
+.+.+ +.+++.+ +.++.+.++|+|.|-|..+-+| .+.+.++++++++.. +++|+++-..+.
T Consensus 144 v~aav--g~~~~~~-~~v~~lv~aGvDvI~iD~a~g~--------------~~~~~~~v~~ik~~~p~~~vi~g~V~T~- 205 (404)
T PRK06843 144 VGAAV--SIDIDTI-ERVEELVKAHVDILVIDSAHGH--------------STRIIELVKKIKTKYPNLDLIAGNIVTK- 205 (404)
T ss_pred EEEEE--eCCHHHH-HHHHHHHhcCCCEEEEECCCCC--------------ChhHHHHHHHHHhhCCCCcEEEEecCCH-
Confidence 45555 4455544 4455556689999999764433 356788999999886 688888766553
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
+-++.|.++|+|+|.+..+-++.-. .+...| . |.+. -.++..++++.+.. ++|||+.||
T Consensus 206 ---e~a~~l~~aGaD~I~vG~g~Gs~c~--------------tr~~~g-~-g~p~-ltai~~v~~~~~~~-~vpVIAdGG 264 (404)
T PRK06843 206 ---EAALDLISVGADCLKVGIGPGSICT--------------TRIVAG-V-GVPQ-ITAICDVYEVCKNT-NICIIADGG 264 (404)
T ss_pred ---HHHHHHHHcCCCEEEECCCCCcCCc--------------ceeecC-C-CCCh-HHHHHHHHHHHhhc-CCeEEEeCC
Confidence 4588889999999998655332100 010011 1 2221 12344556665555 699999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
|.++.|+.++|++||++||||++|.
T Consensus 265 I~~~~Di~KALalGA~aVmvGs~~a 289 (404)
T PRK06843 265 IRFSGDVVKAIAAGADSVMIGNLFA 289 (404)
T ss_pred CCCHHHHHHHHHcCCCEEEEcceee
Confidence 9999999999999999999999997
No 171
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.94 E-value=5e-09 Score=115.68 Aligned_cols=144 Identities=18% Similarity=0.258 Sum_probs=82.9
Q ss_pred cccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCcEEEEcCChhHHHHHH
Q psy16199 85 RKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 164 (842)
Q Consensus 85 ~~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~kVvVIGgG~~g~e~A~ 164 (842)
....++.||||||.. |..|+....+...+.|+++.+|+..... ....++|+|||||.+|.|++.
T Consensus 144 ~~~~ar~vVla~G~~-P~iP~~~~~~~~~~~v~Hss~~~~~~~~---------------~~~~~~V~VVGgGQSAAEi~~ 207 (341)
T PF13434_consen 144 ETYRARNVVLATGGQ-PRIPEWFQDLPGSPRVFHSSEYLSRIDQ---------------SLAGKRVAVVGGGQSAAEIFL 207 (341)
T ss_dssp EEEEESEEEE----E-E---GGGGGGTT-TTEEEGGGHHHHHT--------------------EEEEEE-SSHHHHHHHH
T ss_pred eEEEeCeEEECcCCC-CCCCcchhhcCCCCCEEEehHhhhcccc---------------ccCCCeEEEECCcHhHHHHHH
Confidence 345689999999976 7655544222113679999999886532 122345999999999999999
Q ss_pred HHHHcCC-cEEEEEEeecCccccCC----------HH-------------------------------HHHH--------
Q psy16199 165 SALRCGA-NKVLVVFRKGCTNIRAV----------PE-------------------------------EVQL-------- 194 (842)
Q Consensus 165 ~l~~~G~-~~Vtlv~r~~~~~~~~~----------~~-------------------------------~~~~-------- 194 (842)
.|.+.+. .+|+++.|+.. ..+.. ++ .++.
T Consensus 208 ~L~~~~~~~~V~~i~R~~~-~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~ 286 (341)
T PF13434_consen 208 DLLRRGPEAKVTWISRSPG-FFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQ 286 (341)
T ss_dssp HHHHH-TTEEEEEEESSSS--EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHH
T ss_pred HHHhCCCCcEEEEEECCCc-cCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHH
Confidence 9999875 46999999862 11111 11 0100
Q ss_pred -H-HhcCcEEecCCCceEEEccC-CcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 195 -A-WEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 195 -~-~~~gV~i~~~~~v~~v~~~~-~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+ .+..+.++.++.|+.+...+ +++. +.+.+.. +++..++++|.||+|||++
T Consensus 287 ~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~----------~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 287 RVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQ----------TGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHT---SEEETTEEEEEEEEES-SSEE-EEEEETT----------T--EEEEEESEEEE---EE
T ss_pred HhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEECC----------CCCeEEEecCEEEEcCCcc
Confidence 1 12247788888888887544 3444 6666532 4567789999999999985
No 172
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.93 E-value=6.5e-08 Score=104.53 Aligned_cols=183 Identities=17% Similarity=0.255 Sum_probs=119.6
Q ss_pred ccCCCEEEEccCCCCCCCCCCCCCCccccCceehhcchHHHhhcccCCccCCCCCCCCCCCCCc-EEEEcCChhHHHHHH
Q psy16199 86 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCAT 164 (842)
Q Consensus 86 ~~~yd~lVlAtGs~~~~~~~i~~G~~~~~gv~~~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-VvVIGgG~~g~e~A~ 164 (842)
...+..|||++|.+ |..|+....+ ..+.++++.+|+....+ ...++ |+|||||.+|.|+-.
T Consensus 143 ~y~ar~lVlg~G~~-P~IP~~f~~l-~~~~vfHss~~~~~~~~----------------~~~~~~V~ViG~GQSAAEi~~ 204 (436)
T COG3486 143 VYRARNLVLGVGTQ-PYIPPCFRSL-IGERVFHSSEYLERHPE----------------LLQKRSVTVIGSGQSAAEIFL 204 (436)
T ss_pred EEEeeeEEEccCCC-cCCChHHhCc-CccceeehHHHHHhhHH----------------hhcCceEEEEcCCccHHHHHH
Confidence 45688999999999 7777665333 22569999999865322 11233 999999999999998
Q ss_pred HHHHcCC---cEEEEEEeecCccccCC----------HH----------H--------------------HH----HHH-
Q psy16199 165 SALRCGA---NKVLVVFRKGCTNIRAV----------PE----------E--------------------VQ----LAW- 196 (842)
Q Consensus 165 ~l~~~G~---~~Vtlv~r~~~~~~~~~----------~~----------~--------------------~~----~~~- 196 (842)
.|...-. .++.++.|+.. ..|.. ++ + +. .+.
T Consensus 205 ~Ll~~~~~~~~~l~witR~~g-f~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 205 DLLNSQPPQDYQLNWITRSSG-FLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred HHHhCCCCcCccceeeeccCC-CCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 8875421 13777888862 22211 00 0 00 011
Q ss_pred ------hcCcEEecCCCceEEEcc-CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcC-C
Q psy16199 197 ------EEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIK-P 268 (842)
Q Consensus 197 ------~~gV~i~~~~~v~~v~~~-~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~-g 268 (842)
+..+.++.++.+..++.. +|+ ..+.+.... +++.++++.|.||+|||++.....|++.+. -
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~----------~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~ 352 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHE----------TGELETVETDAVILATGYRRAVPSFLEGLADR 352 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCce-EEEEEeecc----------CCCceEEEeeEEEEecccccCCchhhhhHHHh
Confidence 236788888888888743 333 345555432 466778999999999999944455776653 2
Q ss_pred cccCCCCCeeeCCCCCCCC----CCCeEEeccCC
Q psy16199 269 VKLDKYGYPEVNYTTMATS----VPGVFCGGDTA 298 (842)
Q Consensus 269 l~~~~~G~i~vd~~~~~Ts----~~gVfa~GD~~ 298 (842)
+..+++|...|+.++..-. .-.||+-|-..
T Consensus 353 l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ 386 (436)
T COG3486 353 LQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAEL 386 (436)
T ss_pred hcccccCCeEecCceeeecCCCCcceEEEecccc
Confidence 5678889999986543221 23699998664
No 173
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.91 E-value=3.4e-08 Score=113.77 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=94.0
Q ss_pred CCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~ 651 (842)
+.++++ .+.++.+.++|+|.|+++.+ |. . .....+.++++++.. ++||+++-..+ .+-++
T Consensus 237 g~~~~~-~~~~~~l~~ag~d~i~id~a--~G-----------~-s~~~~~~i~~ik~~~~~~~v~aG~V~t----~~~a~ 297 (495)
T PTZ00314 237 STRPED-IERAAALIEAGVDVLVVDSS--QG-----------N-SIYQIDMIKKLKSNYPHVDIIAGNVVT----ADQAK 297 (495)
T ss_pred CCCHHH-HHHHHHHHHCCCCEEEEecC--CC-----------C-chHHHHHHHHHHhhCCCceEEECCcCC----HHHHH
Confidence 556666 45555666789999999864 21 1 223467899999875 68888853332 35578
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVA 731 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da 731 (842)
.+.++|+|+|.+....++.- .++ . ...+| .+ .-.++..+.++.+.. ++|||+.|||.++.|+
T Consensus 298 ~~~~aGad~I~vg~g~Gs~~-----~t~-~------~~~~g----~p-~~~ai~~~~~~~~~~-~v~vIadGGi~~~~di 359 (495)
T PTZ00314 298 NLIDAGADGLRIGMGSGSIC-----ITQ-E------VCAVG----RP-QASAVYHVARYARER-GVPCIADGGIKNSGDI 359 (495)
T ss_pred HHHHcCCCEEEECCcCCccc-----ccc-h------hccCC----CC-hHHHHHHHHHHHhhc-CCeEEecCCCCCHHHH
Confidence 89999999999844322210 000 0 00111 11 112344455555555 6999999999999999
Q ss_pred HHHHHhCCCEEEEehhhh
Q psy16199 732 LQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 732 ~~~l~~GA~~Vqv~ta~l 749 (842)
.+++++||++||+||.|.
T Consensus 360 ~kAla~GA~~Vm~G~~~a 377 (495)
T PTZ00314 360 CKALALGADCVMLGSLLA 377 (495)
T ss_pred HHHHHcCCCEEEECchhc
Confidence 999999999999999985
No 174
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.91 E-value=2.8e-08 Score=104.47 Aligned_cols=132 Identities=13% Similarity=0.196 Sum_probs=100.1
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccE---EEEecC---ChhcH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPF---FVKLTP---NITNI 646 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv---~vKl~p---~~~~~ 646 (842)
+.|+..++ ..+||+.+-+ |+++..+|+.+.++++...+.+ .+++ .+|... +..+.
T Consensus 86 s~edv~~~----l~~Ga~kvvi-------------Gs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~ 148 (241)
T PRK14024 86 DDESLEAA----LATGCARVNI-------------GTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDL 148 (241)
T ss_pred CHHHHHHH----HHCCCCEEEE-------------CchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccH
Confidence 44554443 3358997765 3445689999999999887654 3455 555532 12257
Q ss_pred HHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcC
Q psy16199 647 TDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGID 726 (842)
Q Consensus 647 ~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~ 726 (842)
.++++.+++.|++.|++++. +..|.++|+ .++++.++++.. ++|||++|||.
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~----------------------~~~g~~~G~-----d~~~i~~i~~~~-~ipviasGGi~ 200 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDV----------------------TKDGTLTGP-----NLELLREVCART-DAPVVASGGVS 200 (241)
T ss_pred HHHHHHHHhcCCCEEEEEee----------------------cCCCCccCC-----CHHHHHHHHhhC-CCCEEEeCCCC
Confidence 89999999999999999654 334566764 289999999987 79999999999
Q ss_pred CHHHHHHHHH---hCCCEEEEehhhhcc
Q psy16199 727 SADVALQFIQ---AGAHAVQICSAVQNQ 751 (842)
Q Consensus 727 t~~da~~~l~---~GA~~Vqv~ta~l~~ 751 (842)
|.+|+.++.. .||++|+++|+++..
T Consensus 201 s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 201 SLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred CHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 9999999875 499999999999954
No 175
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.88 E-value=3.5e-08 Score=104.80 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=104.6
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC-
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN- 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~- 642 (842)
.|++++=.. .+.++..+ .+ .+|++.+.+|. ++..+++.+.++++...+. .+++.+++...
T Consensus 75 ~pv~~gGGi-~s~~d~~~---l~-~~G~~~vvigs-------------~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~ 135 (258)
T PRK01033 75 MPLCYGGGI-KTLEQAKK---IF-SLGVEKVSINT-------------AALEDPDLITEAAERFGSQ-SVVVSIDVKKNL 135 (258)
T ss_pred CCEEECCCC-CCHHHHHH---HH-HCCCCEEEECh-------------HHhcCHHHHHHHHHHhCCC-cEEEEEEEecCC
Confidence 566544211 24444333 33 45999999972 2236788898888887422 36666665322
Q ss_pred ---------------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHH
Q psy16199 643 ---------------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAV 707 (842)
Q Consensus 643 ---------------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v 707 (842)
-.+..++++.+++.|++.|++++. +.-|.++|+ .++++
T Consensus 136 ~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i----------------------~~~G~~~G~-----d~~~i 188 (258)
T PRK01033 136 GGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSI----------------------DRDGTMKGY-----DLELL 188 (258)
T ss_pred CCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEcc----------------------CCCCCcCCC-----CHHHH
Confidence 125789999999999999999653 234556664 38899
Q ss_pred HHHHhhCCCCcEEEecCcCCHHHHHHHH-HhCCCEEEEehhhhccC
Q psy16199 708 SSIAKMFPNFPILGIGGIDSADVALQFI-QAGAHAVQICSAVQNQD 752 (842)
Q Consensus 708 ~~i~~~~~~ipIi~~GGI~t~~da~~~l-~~GA~~Vqv~ta~l~~g 752 (842)
.++++.. ++|||++|||.+.+|+.+++ ..|+++|.++++|.+.+
T Consensus 189 ~~~~~~~-~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 189 KSFRNAL-KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred HHHHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCc
Confidence 9999887 79999999999999999999 69999999999999875
No 176
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.87 E-value=1.4e-07 Score=99.70 Aligned_cols=186 Identities=24% Similarity=0.231 Sum_probs=119.7
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCCCCC---CCCcc--cCCCCHHHHHHHHHHHHhh-CCcc
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHGMGE---RGMGL--ACGQDPEMVRNISLWVRSS-VKIP 634 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~~~~---~~~G~--~~~~~~~~~~~ii~~v~~~-~~~P 634 (842)
..+|.-+++|+ +.+...++++.+.++|||.|||-+ |-|-.-+. +-.-. .-|.+.+.+.++++++++. .++|
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 46888888886 678899999999999999999975 45522110 00000 1135677888999999976 7899
Q ss_pred EEEEecCCh--h-cHHHHHHHHHHCCCCEEEEecCCCcc----------ccC------CCCCC--CCCcccCCCc-----
Q psy16199 635 FFVKLTPNI--T-NITDIAKAAYEGKADGVSAINTVSGL----------MSL------SADGN--PWPAVGTKKL----- 688 (842)
Q Consensus 635 v~vKl~p~~--~-~~~~~a~~~~~~G~d~i~v~nt~~~~----------~~~------~~~~~--~~p~~~~~~~----- 688 (842)
++.=+--|. . .+.++++.+.++|+|+|++.--.... .++ ...++ +...+.....
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 764332221 1 34677777778888777664311000 000 00000 0000000000
Q ss_pred cccCCCCCCc--cccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 689 TTYGGVSGNA--TRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 689 ~~~gG~sG~~--~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
-..-|+.|.. ..+...+.++++++.. +.||+..|||+|++++.+++.+|||+|-+||+++.
T Consensus 170 vs~~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 170 VSRAGVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred EECCCCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0112455542 4566789999999987 68999999999999999999999999999999984
No 177
>PLN02591 tryptophan synthase
Probab=98.85 E-value=2.5e-07 Score=96.84 Aligned_cols=183 Identities=21% Similarity=0.202 Sum_probs=116.7
Q ss_pred ceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCCCC-------CCCCcccCCCCHHHHHHHHHHHHhhCCcc
Q psy16199 565 ILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHGMG-------ERGMGLACGQDPEMVRNISLWVRSSVKIP 634 (842)
Q Consensus 565 pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~~~-------~~~~G~~~~~~~~~~~~ii~~v~~~~~~P 634 (842)
.+|.-+++|+ +.+...++++.+.++|||+|||-+ |-|-.-+ .+- ..-+.+.+.+.++++.+|+..++|
T Consensus 3 ~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rA--L~~G~~~~~~~~~~~~~r~~~~~p 80 (250)
T PLN02591 3 AFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRA--LEKGTTLDSVISMLKEVAPQLSCP 80 (250)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHH--HHcCCCHHHHHHHHHHHhcCCCCC
Confidence 4677788886 678899999999899999999975 4552211 000 011356778889999999878899
Q ss_pred EEEEecCCh--h-cHHHHHHHHHHCCCCEEEEecCCCc----------cccC-----CCCCCC---CCcccCC-----Cc
Q psy16199 635 FFVKLTPNI--T-NITDIAKAAYEGKADGVSAINTVSG----------LMSL-----SADGNP---WPAVGTK-----KL 688 (842)
Q Consensus 635 v~vKl~p~~--~-~~~~~a~~~~~~G~d~i~v~nt~~~----------~~~~-----~~~~~~---~p~~~~~-----~~ 688 (842)
+++=.--|. . ...++.+.+.++|+||+++---... ..++ -..++. ...+... ..
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYL 160 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 875332221 2 4667788888888888776321000 0000 000000 0000000 00
Q ss_pred cccCCCCCCc--cccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 689 TTYGGVSGNA--TRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 689 ~~~gG~sG~~--~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
-..-|.+|.. +.+...+.++++++.. ++||+..-||++++|+.+.+..|||+|-|||+++.
T Consensus 161 Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 161 VSSTGVTGARASVSGRVESLLQELKEVT-DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred eeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0112334432 2234456688898875 89999999999999999999999999999999985
No 178
>PLN02826 dihydroorotate dehydrogenase
Probab=98.85 E-value=1.7e-07 Score=104.93 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=67.6
Q ss_pred cceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeeeE
Q psy16199 347 DISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIE 426 (842)
Q Consensus 347 ~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~e 426 (842)
+|.++++|++|.||+++|++ +..+++.+...+..|||++++||++..|.. +|++||+.+. |+..+++|.
T Consensus 73 ~L~~~~~Gl~f~NPvglAAG-~dkn~~~~~~l~~lGfG~vevgTVT~~pq~-GNp~PR~frl--------~~~~aiiN~- 141 (409)
T PLN02826 73 VLGVEVWGRTFSNPIGLAAG-FDKNAEAVEGLLGLGFGFVEIGSVTPLPQP-GNPKPRVFRL--------REEGAIINR- 141 (409)
T ss_pred CcceEECCEECCCCCEECcc-cCCCHHHHHHHHhcCCCeEEeCCccCCCCC-CCCCCcEEec--------CCCceeEec-
Confidence 67899999999999999999 667899999999999999999999998876 9999999875 335789999
Q ss_pred eecccchhhHHhhhhcCCCCc
Q psy16199 427 LISEKTAFIFFFLFQAIPNFG 447 (842)
Q Consensus 427 ~~s~~~~~~~~~~~~~~~~~~ 447 (842)
++++|.|
T Consensus 142 --------------~Gfnn~G 148 (409)
T PLN02826 142 --------------YGFNSEG 148 (409)
T ss_pred --------------CCCCCcC
Confidence 8888888
No 179
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.84 E-value=7e-08 Score=111.22 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=98.8
Q ss_pred CCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~ 651 (842)
|..++++.+ ++.+.++|+|.|-+.. +|. ....+.+.++++|+.. +.+|+++=..+ .+-|+
T Consensus 244 g~~~~~~~r-~~~l~~ag~d~i~iD~--~~g------------~~~~~~~~i~~ik~~~p~~~vi~g~v~t----~e~a~ 304 (505)
T PLN02274 244 GTRESDKER-LEHLVKAGVDVVVLDS--SQG------------DSIYQLEMIKYIKKTYPELDVIGGNVVT----MYQAQ 304 (505)
T ss_pred cCCccHHHH-HHHHHHcCCCEEEEeC--CCC------------CcHHHHHHHHHHHHhCCCCcEEEecCCC----HHHHH
Confidence 545555544 5555567999988865 442 2356678999999977 58888874333 34488
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVA 731 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da 731 (842)
.+.++|+|+|.+++..+.. . .+....-.|.+ ...++..+.++++.. ++|||+.|||.++.|+
T Consensus 305 ~a~~aGaD~i~vg~g~G~~-----~-----------~t~~~~~~g~~-~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di 366 (505)
T PLN02274 305 NLIQAGVDGLRVGMGSGSI-----C-----------TTQEVCAVGRG-QATAVYKVASIAAQH-GVPVIADGGISNSGHI 366 (505)
T ss_pred HHHHcCcCEEEECCCCCcc-----c-----------cCccccccCCC-cccHHHHHHHHHHhc-CCeEEEeCCCCCHHHH
Confidence 8999999999996532211 0 00000001111 234677788888887 7999999999999999
Q ss_pred HHHHHhCCCEEEEehhhh
Q psy16199 732 LQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 732 ~~~l~~GA~~Vqv~ta~l 749 (842)
.++|++||++||+||+|.
T Consensus 367 ~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 367 VKALTLGASTVMMGSFLA 384 (505)
T ss_pred HHHHHcCCCEEEEchhhc
Confidence 999999999999999998
No 180
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.82 E-value=1.3e-07 Score=99.82 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=105.2
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHh-hCCccEEEEecC-
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRS-SVKIPFFVKLTP- 641 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~-~~~~Pv~vKl~p- 641 (842)
.|++++=.. .+.+++.++.. .|+|++.++.. +..+|+.+.++++.+.+ .+-+++-+|...
T Consensus 72 ~pv~~~GGI-~s~~d~~~~l~----~G~~~v~ig~~-------------~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~ 133 (243)
T cd04731 72 IPLTVGGGI-RSLEDARRLLR----AGADKVSINSA-------------AVENPELIREIAKRFGSQCVVVSIDAKRRGD 133 (243)
T ss_pred CCEEEeCCC-CCHHHHHHHHH----cCCceEEECch-------------hhhChHHHHHHHHHcCCCCEEEEEEeeecCC
Confidence 577754321 34566555443 48999988632 23678888888888743 233455555332
Q ss_pred -------------ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHH
Q psy16199 642 -------------NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVS 708 (842)
Q Consensus 642 -------------~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~ 708 (842)
...+..++++.+.+.|+|+|++++.... |-..| ..++++.
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~----------------------g~~~g-----~~~~~i~ 186 (243)
T cd04731 134 GGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD----------------------GTKKG-----YDLELIR 186 (243)
T ss_pred CceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCC----------------------CCCCC-----CCHHHHH
Confidence 1236778999999999999999763211 11122 1388889
Q ss_pred HHHhhCCCCcEEEecCcCCHHHHHHHHHh-CCCEEEEehhhhccCchhHHHHHHH
Q psy16199 709 SIAKMFPNFPILGIGGIDSADVALQFIQA-GAHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 709 ~i~~~~~~ipIi~~GGI~t~~da~~~l~~-GA~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
++++.. ++|||++|||.+.+|+.+++.. ||++|+++|++...... +.++++.
T Consensus 187 ~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~-~~~~~~~ 239 (243)
T cd04731 187 AVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT-IAELKEY 239 (243)
T ss_pred HHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC-HHHHHHH
Confidence 998887 7999999999999999999996 99999999999954332 4444333
No 181
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.82 E-value=1.6e-07 Score=99.93 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=100.7
Q ss_pred eEEEeccCCCHhHHHHHHHHHhh-cCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCCh
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEK-AGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNI 643 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~-agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~ 643 (842)
+.+++ |..++++..+.+.++. +++|+|-|..+ | -..+.+.+.++++|+.. +++|++ .|+
T Consensus 99 ~~vav--G~~~~d~er~~~L~~~~~g~D~iviD~A--h------------Ghs~~~i~~ik~ik~~~P~~~vIa---GNV 159 (346)
T PRK05096 99 VMVST--GTSDADFEKTKQILALSPALNFICIDVA--N------------GYSEHFVQFVAKAREAWPDKTICA---GNV 159 (346)
T ss_pred EEEEe--cCCHHHHHHHHHHHhcCCCCCEEEEECC--C------------CcHHHHHHHHHHHHHhCCCCcEEE---ecc
Confidence 44466 5678889888887763 69999999752 2 23467889999999876 567655 444
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.. .+.++.|.++|||+|.+.=..++. =+++ - .+.. |.+ .-.|+..+++.++.. ++|||+.|
T Consensus 160 ~T-~e~a~~Li~aGAD~vKVGIGpGSi-----CtTr-~------vtGv----G~P-QltAV~~~a~~a~~~-gvpiIADG 220 (346)
T PRK05096 160 VT-GEMVEELILSGADIVKVGIGPGSV-----CTTR-V------KTGV----GYP-QLSAVIECADAAHGL-GGQIVSDG 220 (346)
T ss_pred cC-HHHHHHHHHcCCCEEEEcccCCcc-----ccCc-c------cccc----Chh-HHHHHHHHHHHHHHc-CCCEEecC
Confidence 33 457888999999999872111100 0000 0 0111 111 223455556666665 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
||.+.-|+.++|.+|||+||+|+-|-
T Consensus 221 Gi~~sGDI~KAlaaGAd~VMlGsllA 246 (346)
T PRK05096 221 GCTVPGDVAKAFGGGADFVMLGGMLA 246 (346)
T ss_pred CcccccHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999999999874
No 182
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.81 E-value=4.5e-08 Score=101.45 Aligned_cols=169 Identities=20% Similarity=0.167 Sum_probs=109.5
Q ss_pred cceEEEeccCCCH--------hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccE
Q psy16199 564 SILIASIMCTYNK--------DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635 (842)
Q Consensus 564 ~pvi~si~~g~~~--------e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv 635 (842)
.++|+.+.. .+| ++|.++|+..+++||++|-++.. +. .+...+ +.++.+++.+++||
T Consensus 11 ~~vIae~k~-~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~-~~---------~~~g~~----~~~~~i~~~v~iPi 75 (217)
T cd00331 11 LGVIAEVKR-ASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTE-PK---------YFQGSL----EDLRAVREAVSLPV 75 (217)
T ss_pred ceEEEEecC-CCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeC-cc---------ccCCCH----HHHHHHHHhcCCCE
Confidence 588998874 333 46999999999999999977631 10 111233 46677777779999
Q ss_pred EEEecCChhcHHHHHHHHHHCCCCEEEEecCCCcc------------ccCCC--CCCCCCccc---CCC--ccccCCCCC
Q psy16199 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGL------------MSLSA--DGNPWPAVG---TKK--LTTYGGVSG 696 (842)
Q Consensus 636 ~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~------------~~~~~--~~~~~p~~~---~~~--~~~~gG~sG 696 (842)
++|- .+.+ ...++.+.++|+|+|++..+.... .+++. +...+..+. ..+ .-.+++..+
T Consensus 76 ~~~~--~i~~-~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~ 152 (217)
T cd00331 76 LRKD--FIID-PYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDL 152 (217)
T ss_pred EECC--eecC-HHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCc
Confidence 9873 1222 246899999999999987654331 11110 000000000 000 000111122
Q ss_pred CccccchHHHHHHHHhhC-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 697 NATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~~~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.. .+..++.+.++++.+ .++|+++.|||.+++|+.+++.+||++|.+||+++..
T Consensus 153 ~~-~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 153 KT-FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred cc-cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 21 234457788888876 3699999999999999999999999999999999953
No 183
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.80 E-value=1e-07 Score=98.08 Aligned_cols=123 Identities=24% Similarity=0.237 Sum_probs=91.4
Q ss_pred HHHHhhcCcCEEEE--eccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe---cCChh--cHHHHHHHHHH
Q psy16199 583 SKKTEKAGADALEL--NLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---TPNIT--NITDIAKAAYE 655 (842)
Q Consensus 583 a~~~~~agaD~iel--N~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---~p~~~--~~~~~a~~~~~ 655 (842)
++.+.+.|||.|++ |+++++. .+.+.+.+-++.+++.. .|+.+|+ +++++ ++..+++.+.+
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~~-----------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~ 147 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALKS-----------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKE 147 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhcC-----------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHH
Confidence 33444459998875 7777754 34677777788888765 4889999 88776 57888999999
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHHH
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQF 734 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~~ 734 (842)
+|+|+| .+||..+ .|| .+++.++.+++..+ +++|.++|||+|++|+.++
T Consensus 148 agadfI-KTsTG~~---------------------~~g--------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~ 197 (221)
T PRK00507 148 AGADFV-KTSTGFS---------------------TGG--------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAM 197 (221)
T ss_pred hCCCEE-EcCCCCC---------------------CCC--------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHH
Confidence 999954 5555221 122 33677777777764 5999999999999999999
Q ss_pred HHhCCCEEEEehh
Q psy16199 735 IQAGAHAVQICSA 747 (842)
Q Consensus 735 l~~GA~~Vqv~ta 747 (842)
+.+||+.+...++
T Consensus 198 i~aGA~riGtS~~ 210 (221)
T PRK00507 198 IEAGATRLGTSAG 210 (221)
T ss_pred HHcCcceEccCcH
Confidence 9999999876554
No 184
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.79 E-value=1.5e-07 Score=98.85 Aligned_cols=137 Identities=17% Similarity=0.255 Sum_probs=97.8
Q ss_pred cceEEEeccCCCH-hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNK-DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~-e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+.+++... +. +.+.+.++.+.++|+|+|.++...+ .++++++++ .++|+++++.+
T Consensus 54 ~~~~v~~i~~-~~~~~~~~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~-~~i~~i~~v~~- 111 (236)
T cd04730 54 KPFGVNLLVP-SSNPDFEALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKA-AGIKVIPTVTS- 111 (236)
T ss_pred CCeEEeEecC-CCCcCHHHHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHH-cCCEEEEeCCC-
Confidence 4666777532 22 4566777777788999999964311 134444443 46888888754
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
.+.++.+.+.|+|+|.+.+.. .+|..+... +..+++++++++.+ ++||++.
T Consensus 112 ----~~~~~~~~~~gad~i~~~~~~-----------------------~~G~~~~~~-~~~~~~i~~i~~~~-~~Pvi~~ 162 (236)
T cd04730 112 ----VEEARKAEAAGADALVAQGAE-----------------------AGGHRGTFD-IGTFALVPEVRDAV-DIPVIAA 162 (236)
T ss_pred ----HHHHHHHHHcCCCEEEEeCcC-----------------------CCCCCCccc-cCHHHHHHHHHHHh-CCCEEEE
Confidence 244677888999999885531 122222211 23478899998887 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
|||.+++|+.+++++||++|+++|+++..
T Consensus 163 GGI~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 163 GGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred CCCCCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 99999999999999999999999999954
No 185
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.79 E-value=1e-07 Score=109.16 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=96.2
Q ss_pred CCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh-CCccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS-VKIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~-~~~Pv~vKl~p~~~~~~~~a~ 651 (842)
+...+++.++... .++|+|.|+++.+-.| ...+.+.++++++. .++||+++-..+ .+-++
T Consensus 220 ~~~~~~~~r~~~L-~~aG~d~I~vd~a~g~--------------~~~~~~~i~~i~~~~~~~~vi~G~v~t----~~~a~ 280 (450)
T TIGR01302 220 GTREFDKERAEAL-VKAGVDVIVIDSSHGH--------------SIYVIDSIKEIKKTYPDLDIIAGNVAT----AEQAK 280 (450)
T ss_pred cCchhHHHHHHHH-HHhCCCEEEEECCCCc--------------HhHHHHHHHHHHHhCCCCCEEEEeCCC----HHHHH
Confidence 4456666666644 4579999999864432 24677889999988 489999965443 34588
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVA 731 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da 731 (842)
.|.++|+|+|.+++..++.- .++ ....+| .+ .-.++..+.++.+.. ++|||+.|||.++.|+
T Consensus 281 ~l~~aGad~i~vg~g~G~~~-----~t~-------~~~~~g----~p-~~~~i~~~~~~~~~~-~vpviadGGi~~~~di 342 (450)
T TIGR01302 281 ALIDAGADGLRVGIGPGSIC-----TTR-------IVAGVG----VP-QITAVYDVAEYAAQS-GIPVIADGGIRYSGDI 342 (450)
T ss_pred HHHHhCCCEEEECCCCCcCC-----ccc-------eecCCC----cc-HHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHH
Confidence 89999999999865433210 000 000111 11 112333344444445 6999999999999999
Q ss_pred HHHHHhCCCEEEEehhhh
Q psy16199 732 LQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 732 ~~~l~~GA~~Vqv~ta~l 749 (842)
.++|++||++||+|+.|.
T Consensus 343 ~kAla~GA~~V~~G~~~a 360 (450)
T TIGR01302 343 VKALAAGADAVMLGSLLA 360 (450)
T ss_pred HHHHHcCCCEEEECchhh
Confidence 999999999999999997
No 186
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.77 E-value=5.7e-07 Score=95.05 Aligned_cols=185 Identities=21% Similarity=0.178 Sum_probs=116.6
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCCCCC---CCCcc--cCCCCHHHHHHHHHHHHhhCCccE
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHGMGE---RGMGL--ACGQDPEMVRNISLWVRSSVKIPF 635 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~~~~---~~~G~--~~~~~~~~~~~ii~~v~~~~~~Pv 635 (842)
..+|.-+++|+ +.+...++++.+.+.|||+|||-+ |-|-..+. +..-. .-+.+.+.+.++++.+|+..++|+
T Consensus 15 ~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 15 CALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 46888888887 678899999999999999999975 55522110 00000 113567788899999998888997
Q ss_pred EEEecCC--hh-cHHHHHHHHHHCCCCEEEEecCCC----------------ccccCCCCC--CCCCcccCCC-----cc
Q psy16199 636 FVKLTPN--IT-NITDIAKAAYEGKADGVSAINTVS----------------GLMSLSADG--NPWPAVGTKK-----LT 689 (842)
Q Consensus 636 ~vKl~p~--~~-~~~~~a~~~~~~G~d~i~v~nt~~----------------~~~~~~~~~--~~~p~~~~~~-----~~ 689 (842)
++=.--| +. .+.++.+.+.++|+|||++.--.. ....+...+ .+...+.... .-
T Consensus 95 vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 95 VIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred EEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 6433222 11 455667777777777766643100 000000000 0000000000 00
Q ss_pred ccCCCCCC--ccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 690 TYGGVSGN--ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 690 ~~gG~sG~--~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
..-|..|. .+.+...+.++++++.. +.||...+||++++++.+...+|||+|-+||+++
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 11233343 33455677888888877 7999999999999999999999999999999997
No 187
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.76 E-value=1.9e-07 Score=98.43 Aligned_cols=151 Identities=22% Similarity=0.213 Sum_probs=102.1
Q ss_pred cceEEEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHh-hC-------Ccc
Q psy16199 564 SILIASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRS-SV-------KIP 634 (842)
Q Consensus 564 ~pvi~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~-~~-------~~P 634 (842)
.|+++ ++| .+.++...+. ++|||.+.++ +....+|+.+.++.+.+-. .+ +.+
T Consensus 77 ~~l~v--~GGi~~~~~~~~~~----~~Ga~~v~iG-------------s~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~ 137 (241)
T PRK13585 77 VPVQL--GGGIRSAEDAASLL----DLGVDRVILG-------------TAAVENPEIVRELSEEFGSERVMVSLDAKDGE 137 (241)
T ss_pred CcEEE--cCCcCCHHHHHHHH----HcCCCEEEEC-------------hHHhhChHHHHHHHHHhCCCcEEEEEEeeCCE
Confidence 46665 333 2345544433 3699998773 2234678888777777532 11 112
Q ss_pred EEEEec-CChh-cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh
Q psy16199 635 FFVKLT-PNIT-NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK 712 (842)
Q Consensus 635 v~vKl~-p~~~-~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~ 712 (842)
+.+|-. .+.. +..++++.+.+.|++.|+++++.. -|.++| ..++.++++++
T Consensus 138 v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~----------------------~g~~~g-----~~~~~i~~i~~ 190 (241)
T PRK13585 138 VVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDV----------------------EGLLEG-----VNTEPVKELVD 190 (241)
T ss_pred EEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecC----------------------CCCcCC-----CCHHHHHHHHH
Confidence 222210 1111 678999999999999999976521 122233 23788899999
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHH
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
.+ ++||+++|||+|.+|+.+++.+||++|+++|+++. ++..+.++++.
T Consensus 191 ~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~-~~~~~~~~~~~ 238 (241)
T PRK13585 191 SV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK-GKFTLEEAIEA 238 (241)
T ss_pred hC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc-CCcCHHHHHHH
Confidence 88 79999999999999999998899999999999994 56666665544
No 188
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.75 E-value=1.1e-07 Score=104.86 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCC
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKA 658 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~ 658 (842)
|.+..+.+.+.+.+.|...++.|.. ++++.+++ .++.++..++. .+-|+.+.+.|+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~------------------~~i~~l~~-~gi~v~~~v~s-----~~~A~~a~~~G~ 157 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPP------------------EVIERLHA-AGIKVIPQVTS-----VREARKAAKAGA 157 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-H------------------HHHHHHHH-TT-EEEEEESS-----HHHHHHHHHTT-
T ss_pred cccccccccccceEEEEeecccchH------------------HHHHHHHH-cCCccccccCC-----HHHHHHhhhcCC
Confidence 4555555555688999999888741 45666664 47888887654 355788999999
Q ss_pred CEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhC
Q psy16199 659 DGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAG 738 (842)
Q Consensus 659 d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~G 738 (842)
|+|++-+. ..||+.|...- ....++.++++.+ ++|||+.|||.+++++..++.+|
T Consensus 158 D~iv~qG~-----------------------eAGGH~g~~~~-~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lG 212 (330)
T PF03060_consen 158 DAIVAQGP-----------------------EAGGHRGFEVG-STFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALG 212 (330)
T ss_dssp SEEEEE-T-----------------------TSSEE---SSG--HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT
T ss_pred CEEEEecc-----------------------ccCCCCCcccc-ceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcC
Confidence 99999432 35677662211 4578889999988 69999999999999999999999
Q ss_pred CCEEEEehhhhc
Q psy16199 739 AHAVQICSAVQN 750 (842)
Q Consensus 739 A~~Vqv~ta~l~ 750 (842)
|++||+||.|+.
T Consensus 213 A~gV~~GTrFl~ 224 (330)
T PF03060_consen 213 ADGVQMGTRFLA 224 (330)
T ss_dssp -SEEEESHHHHT
T ss_pred CCEeecCCeEEe
Confidence 999999999994
No 189
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.72 E-value=5.4e-08 Score=83.89 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=59.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHH-----HHHHhcCcEEecCCCceEEEccCCcEEEEEE
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQF 223 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~-----~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~ 223 (842)
||+|||||++|+|+|..|.+.|. +||++++++... +..++.. +.+.+.||++++++.++++...+..++ |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEE
Confidence 48999999999999999999986 599999998643 5555442 346678999999999999986554566 777
Q ss_pred Ee
Q psy16199 224 NR 225 (842)
Q Consensus 224 ~~ 225 (842)
++
T Consensus 78 ~~ 79 (80)
T PF00070_consen 78 ED 79 (80)
T ss_dssp ET
T ss_pred ec
Confidence 64
No 190
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.71 E-value=3.9e-07 Score=99.36 Aligned_cols=172 Identities=14% Similarity=0.169 Sum_probs=114.7
Q ss_pred ccccCCcccccCC-CCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 463 KKLNSDGVSLQNG-LPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 463 ~~~~~~~~g~~~g-~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
+..+.|||++++| ++++ .+.+..+.+. +|+ +++|||+.|+.|||. |+++.+ ..++|+ +|++|.|.
T Consensus 8 G~~~~nPv~~aag~~~~~-----~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~----~g~~~~g~ 76 (301)
T PRK07259 8 GLKLKNPVMPASGTFGFG-----GEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNA----IGLQNPGV 76 (301)
T ss_pred CEECCCCcEECCcCCCCC-----HHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC--Cceeec----CCCCCcCH
Confidence 5679999999998 9999 7888877665 555 999999999999999 888876 678888 78776554
Q ss_pred hhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHH
Q psy16199 539 QAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPE 618 (842)
Q Consensus 539 dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~ 618 (842)
+. |.+......
T Consensus 77 ~~--------------------------------------~~~~~~~~~------------------------------- 87 (301)
T PRK07259 77 DA--------------------------------------FIEEELPWL------------------------------- 87 (301)
T ss_pred HH--------------------------------------HHHHHHHHH-------------------------------
Confidence 32 222211111
Q ss_pred HHHHHHHHHHhhCCccEEEEecC-ChhcHHHHHHHHHHCC-CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC
Q psy16199 619 MVRNISLWVRSSVKIPFFVKLTP-NITNITDIAKAAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696 (842)
Q Consensus 619 ~~~~ii~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~G-~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG 696 (842)
+..++|+++=+.. +.+++.+.|+.++++| +|+|-+ |- . -|.. ..||+.-
T Consensus 88 ----------~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iEl-N~-~-----------cP~~------~~gg~~~ 138 (301)
T PRK07259 88 ----------EEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIEL-NI-S-----------CPNV------KHGGMAF 138 (301)
T ss_pred ----------hccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEE-EC-C-----------CCCC------CCCcccc
Confidence 0113466666643 4567888999999999 999987 21 0 1110 1222211
Q ss_pred CccccchHHHHHHHHhhCCCCcEEEec--CcCCHHHHHHHHH-hCCCEEEE
Q psy16199 697 NATRPMGLKAVSSIAKMFPNFPILGIG--GIDSADVALQFIQ-AGAHAVQI 744 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~~~~~ipIi~~G--GI~t~~da~~~l~-~GA~~Vqv 744 (842)
........+.++.+++.+ ++||+.=- .+.+..++.+.+. +|+|++-+
T Consensus 139 ~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 139 GTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 111345678888888887 78988733 3444455555554 89998865
No 191
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.71 E-value=3.6e-07 Score=95.72 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=97.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC-
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN- 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~- 642 (842)
.|++++=. -.+.++..+ .+ +.|+|.+.+|- .+..+++.+.++.+...+. .+++.+++..+
T Consensus 75 ~pv~~~gg-i~~~~d~~~---~~-~~G~~~vilg~-------------~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~ 135 (232)
T TIGR03572 75 MPLTVGGG-IRSLEDAKK---LL-SLGADKVSINT-------------AALENPDLIEEAARRFGSQ-CVVVSIDVKKEL 135 (232)
T ss_pred CCEEEECC-CCCHHHHHH---HH-HcCCCEEEECh-------------hHhcCHHHHHHHHHHcCCc-eEEEEEEeccCC
Confidence 57665321 124444444 32 35899998862 2347788888888765322 25666665432
Q ss_pred ----------------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHH
Q psy16199 643 ----------------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKA 706 (842)
Q Consensus 643 ----------------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~ 706 (842)
..+..++++.+++.|+|.|++++... .|..+|. .+++
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~----------------------~g~~~g~-----~~~~ 188 (232)
T TIGR03572 136 DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDR----------------------DGTMKGY-----DLEL 188 (232)
T ss_pred CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCc----------------------cCCcCCC-----CHHH
Confidence 12578999999999999999965211 1223332 2888
Q ss_pred HHHHHhhCCCCcEEEecCcCCHHHHHHHH-HhCCCEEEEehhhh
Q psy16199 707 VSSIAKMFPNFPILGIGGIDSADVALQFI-QAGAHAVQICSAVQ 749 (842)
Q Consensus 707 v~~i~~~~~~ipIi~~GGI~t~~da~~~l-~~GA~~Vqv~ta~l 749 (842)
++++++.+ ++||+++|||.+.+|+.+++ .+||++|+++|+|-
T Consensus 189 ~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 189 IKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 99999987 79999999999999999944 59999999999984
No 192
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.70 E-value=2.2e-07 Score=97.51 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=99.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEE-----
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVK----- 638 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vK----- 638 (842)
.|++++=.. .+.++..++.. .|||.+-++ .++..+++.+.++++...+.+-+++-+|
T Consensus 75 ~pv~~~GGI-~~~ed~~~~~~----~Ga~~vilg-------------~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~ 136 (233)
T PRK00748 75 IPVQVGGGI-RSLETVEALLD----AGVSRVIIG-------------TAAVKNPELVKEACKKFPGKIVVGLDARDGKVA 136 (233)
T ss_pred CCEEEcCCc-CCHHHHHHHHH----cCCCEEEEC-------------chHHhCHHHHHHHHHHhCCCceeeeeccCCEEE
Confidence 577663221 34555554433 599998763 2334678888888888755443344333
Q ss_pred ecC----ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC
Q psy16199 639 LTP----NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF 714 (842)
Q Consensus 639 l~p----~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~ 714 (842)
+.. ...+..++++.+++.|++.|++++.. .-|.++| +. ++.++++++..
T Consensus 137 ~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~----------------------~~g~~~G-~d----~~~i~~l~~~~ 189 (233)
T PRK00748 137 TDGWLETSGVTAEDLAKRFEDAGVKAIIYTDIS----------------------RDGTLSG-PN----VEATRELAAAV 189 (233)
T ss_pred EccCeecCCCCHHHHHHHHHhcCCCEEEEeeec----------------------CcCCcCC-CC----HHHHHHHHHhC
Confidence 111 12356899999999999999886431 2233455 22 88899999987
Q ss_pred CCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhcc
Q psy16199 715 PNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQ 751 (842)
Q Consensus 715 ~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~ 751 (842)
++|||++|||.|.+|+.+++..| |++|+++|+++..
T Consensus 190 -~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 190 -PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred -CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 69999999999999999999988 9999999999954
No 193
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.69 E-value=4.3e-07 Score=94.43 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEE
Q psy16199 583 SKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVS 662 (842)
Q Consensus 583 a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~ 662 (842)
++.+.++|||+|.+.. |.... .+.+.+.++++.+++..++|+++-+.. . +-++.+.+.|+|.|.
T Consensus 81 v~~a~~aGad~I~~d~--~~~~~---------p~~~~~~~~i~~~~~~~~i~vi~~v~t----~-ee~~~a~~~G~d~i~ 144 (221)
T PRK01130 81 VDALAAAGADIIALDA--TLRPR---------PDGETLAELVKRIKEYPGQLLMADCST----L-EEGLAAQKLGFDFIG 144 (221)
T ss_pred HHHHHHcCCCEEEEeC--CCCCC---------CCCCCHHHHHHHHHhCCCCeEEEeCCC----H-HHHHHHHHcCCCEEE
Confidence 4556678999988864 22100 000455677888876456888875432 2 235788999999987
Q ss_pred EecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEE
Q psy16199 663 AINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAV 742 (842)
Q Consensus 663 v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~V 742 (842)
++++ + .. .... ...+..+..++++++.+ ++||++.|||.+++|+.+++++||++|
T Consensus 145 ~~~~-g-~t------------------~~~~----~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 145 TTLS-G-YT------------------EETK----KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAV 199 (221)
T ss_pred cCCc-e-ee------------------cCCC----CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 6432 1 00 0000 01222377889999988 799999999999999999999999999
Q ss_pred EEehhhhccCchhHHHHHHHH
Q psy16199 743 QICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 743 qv~ta~l~~gp~~~~~i~~~l 763 (842)
++||+++ +..+..+++.+.|
T Consensus 200 ~iGsai~-~~~~~~~~~~~~~ 219 (221)
T PRK01130 200 VVGGAIT-RPEEITKWFVDAL 219 (221)
T ss_pred EEchHhc-CCHHHHHHHHHHh
Confidence 9999998 4344455544433
No 194
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.69 E-value=6.6e-08 Score=110.75 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=95.4
Q ss_pred eecc-eeEeecC-CCCccccc---------------cCCCCCCC--------HHHHHHHHHHHHhcCcE--EEeceeecc
Q psy16199 24 LSKD-LPDIERP-VAALPDSS---------------EIPQYRLP--------FDAVNFEVELVKDLGVK--IECERSLST 76 (842)
Q Consensus 24 ~g~~-V~l~Ek~-~~GG~~~~---------------~iP~~~~~--------~~~v~~~~~~l~~~gV~--i~~~~~v~~ 76 (842)
.|.. ++||||+ .+||.+++ ++|.+..+ .++.++..++++++++. +..++.|..
T Consensus 30 ~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~ 109 (443)
T COG2072 30 AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEV 109 (443)
T ss_pred cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEE
Confidence 3444 9999998 89998542 23322221 13566677777777754 334443321
Q ss_pred ---------ccceeccccc--cCCCEEEEccCCC-CCCCCCCCCCCccccC-ceehhcchHHHhhcccCCccCCCCCCCC
Q psy16199 77 ---------RDITIEKLRK--DGYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESL 143 (842)
Q Consensus 77 ---------~~v~~~~~~~--~~yd~lVlAtGs~-~~~~~~i~~G~~~~~g-v~~~~~~l~~~~~~~~~~~c~~c~~~~~ 143 (842)
..|+.++... +.+|.||+|||.. .|+.|+++ |.+...| ++|+.++-..
T Consensus 110 ~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~~~~~------------------ 170 (443)
T COG2072 110 ADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSADWPNP------------------ 170 (443)
T ss_pred EEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhcCCCc------------------
Confidence 1234444333 3499999999975 47777887 7666555 6666655542
Q ss_pred CCCCCc-EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcccc
Q psy16199 144 PILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR 186 (842)
Q Consensus 144 ~~~~~k-VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~ 186 (842)
..+.+| |+|||+|.||+++|.+|.+.| ++||++.|++...++
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~qRs~~~~~~ 213 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLSQRSPPHILP 213 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcC-CeeEEEecCCCceec
Confidence 345555 999999999999999999998 569999999854433
No 195
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.68 E-value=3.8e-07 Score=95.50 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=97.4
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC--
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP-- 641 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p-- 641 (842)
.|+.+.=.. .+.++..++. ++|||.+-++. .+.++++.+.++++.+... .+.+.+++..
T Consensus 73 ~pi~~ggGI-~~~ed~~~~~----~~Ga~~vvlgs-------------~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~ 133 (230)
T TIGR00007 73 VPVQVGGGI-RSLEDVEKLL----DLGVDRVIIGT-------------AAVENPDLVKELLKEYGPE-RIVVSLDARGGE 133 (230)
T ss_pred CCEEEeCCc-CCHHHHHHHH----HcCCCEEEECh-------------HHhhCHHHHHHHHHHhCCC-cEEEEEEEECCE
Confidence 466653211 3455554443 36999987642 2236788888888777421 1333333221
Q ss_pred ----C-----hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh
Q psy16199 642 ----N-----ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK 712 (842)
Q Consensus 642 ----~-----~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~ 712 (842)
+ ..+..++++.+.+.|++.+++++... .|..+|. .++.++++++
T Consensus 134 v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~----------------------~g~~~g~-----~~~~i~~i~~ 186 (230)
T TIGR00007 134 VAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISR----------------------DGTLSGP-----NFELTKELVK 186 (230)
T ss_pred EEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecC----------------------CCCcCCC-----CHHHHHHHHH
Confidence 0 12567899999999999999864311 1223332 3888899988
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g 752 (842)
.. ++||+++|||.+.+|+.+++.+||++|+++|+++...
T Consensus 187 ~~-~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~ 225 (230)
T TIGR00007 187 AV-NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGK 225 (230)
T ss_pred hC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 86 7999999999999999999999999999999999553
No 196
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.67 E-value=3e-07 Score=101.35 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=109.4
Q ss_pred cceEEEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|++++|... .+++ +.++++.+++.+++. .+++++.++++++++.. |.+|+.-+
T Consensus 86 ~~~~~QI~g~~~~~~-~a~aa~~~~e~~~~~---------------------~~p~l~~~ii~~vr~a~---VtvkiRl~ 140 (369)
T TIGR01304 86 DPAIAKIAEAYEEGD-QAAATRLLQELHAAP---------------------LKPELLGERIAEVRDSG---VITAVRVS 140 (369)
T ss_pred HHHHHHHhhcCCChH-HHHHHHHHHHcCCCc---------------------cChHHHHHHHHHHHhcc---eEEEEecC
Confidence 4566777532 2333 488888888866664 36889999999999974 77777655
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
..+..++++.+.++|+|.|++++|+.+-+ + .+|... +..+.++.+.. ++|||+
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~-------------------~--~sg~~~----p~~l~~~i~~~-~IPVI~- 193 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTLVSAE-------------------H--VSTSGE----PLNLKEFIGEL-DVPVIA- 193 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhh-------------------c--cCCCCC----HHHHHHHHHHC-CCCEEE-
Confidence 45788999999999999999998864310 1 122221 33456666777 799997
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhc-----c--C-c--hhHHHHHHHHHHHHHhcC
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQN-----Q--D-F--TVVDDYITGLQTLLYLKS 771 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~-----~--g-p--~~~~~i~~~l~~~m~~~g 771 (842)
|+|.|.+++.+++.+|||+|+++++-.. . + | ..+.++....++|+++.|
T Consensus 194 G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g 252 (369)
T TIGR01304 194 GGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETG 252 (369)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999997753321 1 1 1 234455555566776654
No 197
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.66 E-value=3.2e-07 Score=96.30 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=97.1
Q ss_pred cceEEEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHh-hCCccEEEEe--
Q psy16199 564 SILIASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRS-SVKIPFFVKL-- 639 (842)
Q Consensus 564 ~pvi~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~-~~~~Pv~vKl-- 639 (842)
.|+++. +| .+.++..++. ++|||.+-++- ....+|+.+.++.+.+.+ .+-+++-+|.
T Consensus 74 ~pv~~~--GgI~~~e~~~~~~----~~Gad~vvigs-------------~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~ 134 (234)
T cd04732 74 IPVQVG--GGIRSLEDIERLL----DLGVSRVIIGT-------------AAVKNPELVKELLKEYGGERIVVGLDAKDGK 134 (234)
T ss_pred CCEEEe--CCcCCHHHHHHHH----HcCCCEEEECc-------------hHHhChHHHHHHHHHcCCceEEEEEEeeCCE
Confidence 466643 23 3445444433 36999997743 223678888888877643 1112222221
Q ss_pred --cC-----ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh
Q psy16199 640 --TP-----NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK 712 (842)
Q Consensus 640 --~p-----~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~ 712 (842)
.. ...+..++++.+.+.|++.|++++... .|-++|+ .++.++++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~----------------------~g~~~g~-----~~~~i~~i~~ 187 (234)
T cd04732 135 VATKGWLETSEVSLEELAKRFEELGVKAIIYTDISR----------------------DGTLSGP-----NFELYKELAA 187 (234)
T ss_pred EEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecC----------------------CCccCCC-----CHHHHHHHHH
Confidence 11 123678999999999999999965311 2223442 2888999998
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.. ++||+++|||.+.+|+.+++..||++|+++|+++..
T Consensus 188 ~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 188 AT-GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred hc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 87 799999999999999999999999999999999954
No 198
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.66 E-value=5.3e-07 Score=99.02 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=117.5
Q ss_pred ccccCCcccc-cCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCc--cCCCcc-eeE----eeccCCccccCCccccC
Q psy16199 463 KKLNSDGVSL-QNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYT--ELDNKK-QVV----ALINDDMCINCGKCYMA 532 (842)
Q Consensus 463 ~~~~~~~~g~-~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~--~~~n~~-~~~----~~~~~~~~in~~~c~~G 532 (842)
+..+.|||++ |++||++ ++.+..+.+. +|+ +++|||+.| |+|||+ |++ |++++..++|+ +|
T Consensus 8 Gl~l~nPv~~ASg~~~~~-----~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~----~g 78 (325)
T cd04739 8 GLSLKNPLVASASPLSRN-----LDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPE----YG 78 (325)
T ss_pred CEecCCCCEeCCcCCCCC-----HHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccccc----cc
Confidence 5668999999 5999999 8888887766 555 999999997 999999 543 67888888998 88
Q ss_pred CCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCccc
Q psy16199 533 CNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLA 612 (842)
Q Consensus 533 fn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~ 612 (842)
|+|.|++.... ..+.+.
T Consensus 79 ~~n~g~~~~~~--------------------------------------~i~~~~------------------------- 95 (325)
T cd04739 79 RYNLGPEEYLE--------------------------------------LIRRAK------------------------- 95 (325)
T ss_pred ccCcCHHHHHH--------------------------------------HHHHHH-------------------------
Confidence 88665443332 111111
Q ss_pred CCCCHHHHHHHHHHHHhhCCccEEEEecC-ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCcccc
Q psy16199 613 CGQDPEMVRNISLWVRSSVKIPFFVKLTP-NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTY 691 (842)
Q Consensus 613 ~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~ 691 (842)
+..+.||++-+.. +.+++.++++.++++|+|+|.+ |-.. |. . .
T Consensus 96 ----------------~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iEl-N~s~------------~~---~----~ 139 (325)
T cd04739 96 ----------------RAVSIPVIASLNGVSAGGWVDYARQIEEAGADALEL-NIYA------------LP---T----D 139 (325)
T ss_pred ----------------hccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEE-eCCC------------CC---C----C
Confidence 1123466666643 2345678889999999999987 3110 00 0 0
Q ss_pred CCCCCCccccchHHHHHHHHhhCCCCcEEEe--cCcCCHHHHHHHH-HhCCCEEEEehhh
Q psy16199 692 GGVSGNATRPMGLKAVSSIAKMFPNFPILGI--GGIDSADVALQFI-QAGAHAVQICSAV 748 (842)
Q Consensus 692 gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~--GGI~t~~da~~~l-~~GA~~Vqv~ta~ 748 (842)
.+..|..+.....+.++.+++.+ ++||+.= ..+.+..++.+.+ ++||++|.+.-..
T Consensus 140 ~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 140 PDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred CCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 11122222234568888888887 6888764 3344556666655 4899999876654
No 199
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.66 E-value=5.4e-07 Score=93.51 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=90.5
Q ss_pred HHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEE
Q psy16199 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGV 661 (842)
Q Consensus 582 ~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i 661 (842)
.++.+.++|+|+|.++.+.-.. .+.+.+.++++++++..++|+++.+.. .+-+..+.+.|+|.|
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~-----------p~~~~~~~~i~~~~~~g~~~iiv~v~t-----~~ea~~a~~~G~d~i 147 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPR-----------PDGETLAELIKRIHEEYNCLLMADIST-----LEEALNAAKLGFDII 147 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC-----------CCCcCHHHHHHHHHHHhCCeEEEECCC-----HHHHHHHHHcCCCEE
Confidence 4566677899999998643211 111256678888877667898886532 233578889999998
Q ss_pred EEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCE
Q psy16199 662 SAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHA 741 (842)
Q Consensus 662 ~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~ 741 (842)
.+.+. + .... .. .. ....++.++++++.+ ++||++.|||.+++|+.+++.+||++
T Consensus 148 ~~~~~-g-~t~~----------------~~-~~-----~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~Gadg 202 (219)
T cd04729 148 GTTLS-G-YTEE----------------TA-KT-----EDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADA 202 (219)
T ss_pred EccCc-c-cccc----------------cc-CC-----CCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 65321 1 0000 00 00 112368889999888 79999999999999999999999999
Q ss_pred EEEehhhhc
Q psy16199 742 VQICSAVQN 750 (842)
Q Consensus 742 Vqv~ta~l~ 750 (842)
|+++|+++.
T Consensus 203 V~vGsal~~ 211 (219)
T cd04729 203 VVVGSAITR 211 (219)
T ss_pred EEEchHHhC
Confidence 999999984
No 200
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.64 E-value=7.1e-07 Score=87.41 Aligned_cols=130 Identities=21% Similarity=0.323 Sum_probs=86.4
Q ss_pred HhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEec
Q psy16199 586 TEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAIN 665 (842)
Q Consensus 586 ~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~n 665 (842)
+.++|+|.|-+.. +. + .+|+.+.++++.+++.. .+++.-++- + +=+..+.++|+|.|.-
T Consensus 60 l~~aGadIIAlDa----T~--R-------~Rp~~l~~li~~i~~~~-~l~MADist-~----ee~~~A~~~G~D~I~T-- 118 (192)
T PF04131_consen 60 LAEAGADIIALDA----TD--R-------PRPETLEELIREIKEKY-QLVMADIST-L----EEAINAAELGFDIIGT-- 118 (192)
T ss_dssp HHHCT-SEEEEE-----SS--S-------S-SS-HHHHHHHHHHCT-SEEEEE-SS-H----HHHHHHHHTT-SEEE---
T ss_pred HHHcCCCEEEEec----CC--C-------CCCcCHHHHHHHHHHhC-cEEeeecCC-H----HHHHHHHHcCCCEEEc--
Confidence 4457999999974 21 1 33478999999999987 888877754 3 3378889999998866
Q ss_pred CCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 666 TVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 666 t~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
|+.+.+. ++-. ....+++++++++. ++|||+-|+|.|++++.+++.+||.+|.||
T Consensus 119 TLsGYT~---------------------~t~~--~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 119 TLSGYTP---------------------YTKG--DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp TTTTSST---------------------TSTT--SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred ccccCCC---------------------CCCC--CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 3333210 1100 23348999999886 699999999999999999999999999999
Q ss_pred hhhhccCchh-HHHHHHHH
Q psy16199 746 SAVQNQDFTV-VDDYITGL 763 (842)
Q Consensus 746 ta~l~~gp~~-~~~i~~~l 763 (842)
|++- + |.+ .+++.+.+
T Consensus 174 sAIT-r-P~~It~~F~~ai 190 (192)
T PF04131_consen 174 SAIT-R-PQEITKRFVDAI 190 (192)
T ss_dssp HHHH---HHHHHHHHHHHC
T ss_pred cccC-C-HHHHHHHHHHHH
Confidence 9998 3 544 44444443
No 201
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.64 E-value=1e-06 Score=93.61 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=100.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHH-----hhCC------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVR-----SSVK------ 632 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~-----~~~~------ 632 (842)
.|++++=.. .+.++..++.. .|+|.+.++- .+..+|+.+.++.+..- -.++
T Consensus 75 ipv~~~GGi-~s~~~~~~~l~----~Ga~~Viigt-------------~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~ 136 (253)
T PRK02083 75 IPLTVGGGI-RSVEDARRLLR----AGADKVSINS-------------AAVANPELISEAADRFGSQCIVVAIDAKRDPE 136 (253)
T ss_pred CCEEeeCCC-CCHHHHHHHHH----cCCCEEEECh-------------hHhhCcHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 576654321 35666655544 5899998852 22367888888888762 1222
Q ss_pred -ccEEEEecCChh----cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHH
Q psy16199 633 -IPFFVKLTPNIT----NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAV 707 (842)
Q Consensus 633 -~Pv~vKl~p~~~----~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v 707 (842)
.|+.||+..-.. +..++++.+.+.|++.|++++-. ..|-.+|. -++.+
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~----------------------~~g~~~g~-----d~~~i 189 (253)
T PRK02083 137 PGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD----------------------RDGTKNGY-----DLELT 189 (253)
T ss_pred CCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCc----------------------CCCCCCCc-----CHHHH
Confidence 466788754222 56788999999999999985311 11212332 27888
Q ss_pred HHHHhhCCCCcEEEecCcCCHHHHHHHHH-hCCCEEEEehhhhcc
Q psy16199 708 SSIAKMFPNFPILGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQ 751 (842)
Q Consensus 708 ~~i~~~~~~ipIi~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~ 751 (842)
+++++.. ++|||++|||.+.+|+.+++. .||++|++++++...
T Consensus 190 ~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 190 RAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 9998887 699999999999999999997 599999999999954
No 202
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.64 E-value=2e-06 Score=90.78 Aligned_cols=183 Identities=22% Similarity=0.209 Sum_probs=114.6
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCCCCC---CCCcccC--CCCHHHHHHHHHHHH-hhCCcc
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHGMGE---RGMGLAC--GQDPEMVRNISLWVR-SSVKIP 634 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~~~~---~~~G~~~--~~~~~~~~~ii~~v~-~~~~~P 634 (842)
..+|.-+++|+ +.+...++++.+.+.|||+|||-+ |-|..-+. +-.-.++ |.+.+.+.++++.+| +..++|
T Consensus 12 ~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 12 KALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 35788888887 678899999999889999999985 44522110 0000000 246667888889998 556899
Q ss_pred EEEEecCC--hh-cHHHHHHHHHHCCCCEEEEecCCCc--------------cccCC-C-CCCCC---CcccCC--C---
Q psy16199 635 FFVKLTPN--IT-NITDIAKAAYEGKADGVSAINTVSG--------------LMSLS-A-DGNPW---PAVGTK--K--- 687 (842)
Q Consensus 635 v~vKl~p~--~~-~~~~~a~~~~~~G~d~i~v~nt~~~--------------~~~~~-~-~~~~~---p~~~~~--~--- 687 (842)
+++=.--| +. .+.++.+.+.++|+||+++- -++- ...+. + .++.. ..+... +
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 87544222 22 56778888888888888772 2110 00000 0 00000 000000 0
Q ss_pred ccccCCCCCC--ccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 688 LTTYGGVSGN--ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 688 ~~~~gG~sG~--~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
.-..-|.+|. ...+...+.++++++.. ++||+..+||++++|+.+++.. ||+|-|||+++
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 0001122332 22344566999999987 7999999999999999998875 99999999998
No 203
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.64 E-value=1e-06 Score=91.51 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=104.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.|||.-+- .++..=++.+.++|+|+|+ |-. + .+| +.++++.+|+..++|++.-++. +
T Consensus 66 iPVIGi~K-----~~~~~Ea~~L~eaGvDiID----aT~----r-------~rP--~~~~~~~iK~~~~~l~MAD~st-l 122 (283)
T cd04727 66 IPVMAKVR-----IGHFVEAQILEALGVDMID----ESE----V-------LTP--ADEEHHIDKHKFKVPFVCGARN-L 122 (283)
T ss_pred CCeEEeee-----hhHHHHHHHHHHcCCCEEe----ccC----C-------CCc--HHHHHHHHHHHcCCcEEccCCC-H
Confidence 78887664 3334446666778999995 211 1 123 5788888888778999886654 3
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCC-CCCCcccCCCccccCCCCC------CccccchHHHHHHHHhhCCC
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADG-NPWPAVGTKKLTTYGGVSG------NATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~-~~~p~~~~~~~~~~gG~sG------~~~~p~al~~v~~i~~~~~~ 716 (842)
+=|..+.+.|+|.|--+- .+.++--.+. .+.-.+..+-+. ..||.- ....+..+++++++++.. +
T Consensus 123 ----eEal~a~~~Gad~I~TTl--~gyT~~~~~~~~~~~~i~~~i~~-~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~ 194 (283)
T cd04727 123 ----GEALRRISEGAAMIRTKG--EAGTGNVVEAVRHMRAVNGEIRK-LQSMSEEELYAVAKEIQAPYELVKETAKLG-R 194 (283)
T ss_pred ----HHHHHHHHCCCCEEEecC--CCCCCcHHHHHHHHHHHHHHHHH-HhCCCHHHHHhhhcccCCCHHHHHHHHHhc-C
Confidence 236778899999886632 1111100000 000000000000 011110 001245689999999987 6
Q ss_pred CcEE--EecCcCCHHHHHHHHHhCCCEEEEehhhhcc-Cc-hhHHHHHHHHHH
Q psy16199 717 FPIL--GIGGIDSADVALQFIQAGAHAVQICSAVQNQ-DF-TVVDDYITGLQT 765 (842)
Q Consensus 717 ipIi--~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~-gp-~~~~~i~~~l~~ 765 (842)
+||+ +.|||.|++++.+++.+||++|.|+|+++.. +| ...+++.+.+..
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 9997 9999999999999999999999999999942 12 344455444443
No 204
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=103.74 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=81.1
Q ss_pred HHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCC-ccc
Q psy16199 622 NISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGN-ATR 700 (842)
Q Consensus 622 ~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~-~~~ 700 (842)
+.++.+++ .++.|+.++.. .+.|+.+++.|+|+|++-. ...||+.|. ...
T Consensus 118 ~~i~~~~~-~g~~v~~~v~~-----~~~A~~~~~~G~d~vI~~g-----------------------~eAGGH~g~~~~~ 168 (336)
T COG2070 118 EFVARLKA-AGIKVIHSVIT-----VREALKAERAGADAVIAQG-----------------------AEAGGHRGGVDLE 168 (336)
T ss_pred HHHHHHHH-cCCeEEEEeCC-----HHHHHHHHhCCCCEEEecC-----------------------CcCCCcCCCCCCC
Confidence 44555555 57788888765 5779999999999999922 246777664 334
Q ss_pred cchHHHHHHHHhhCCC-CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 701 PMGLKAVSSIAKMFPN-FPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 701 p~al~~v~~i~~~~~~-ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
+....++.++++.+ + +|||+.|||.+++++..++++||++|||||.|+.
T Consensus 169 ~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 169 VSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred ccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 56688999999999 6 9999999999999999999999999999999993
No 205
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.63 E-value=9.4e-07 Score=102.41 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=92.5
Q ss_pred CCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~ 651 (842)
+.+++. .+.++.+.++|+|.|-++. +|. ....+.+.++++++.. ++||+++-.-+ .+-++
T Consensus 224 ~~~~~~-~e~a~~L~~agvdvivvD~--a~g------------~~~~vl~~i~~i~~~~p~~~vi~g~v~t----~e~a~ 284 (486)
T PRK05567 224 GVGADN-EERAEALVEAGVDVLVVDT--AHG------------HSEGVLDRVREIKAKYPDVQIIAGNVAT----AEAAR 284 (486)
T ss_pred ccCcch-HHHHHHHHHhCCCEEEEEC--CCC------------cchhHHHHHHHHHhhCCCCCEEEeccCC----HHHHH
Confidence 334544 5556666668999987653 331 2355778899999887 89999965443 35578
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC--CCCcEEEecCcCCHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF--PNFPILGIGGIDSAD 729 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~--~~ipIi~~GGI~t~~ 729 (842)
.|.++|+|+|.+.-+-++ +.+++ ....+| .| .+..+.++++.. .++|||+.|||+++.
T Consensus 285 ~l~~aGad~i~vg~g~gs-----~~~~r-------~~~~~g-------~p-~~~~~~~~~~~~~~~~~~viadGGi~~~~ 344 (486)
T PRK05567 285 ALIEAGADAVKVGIGPGS-----ICTTR-------IVAGVG-------VP-QITAIADAAEAAKKYGIPVIADGGIRYSG 344 (486)
T ss_pred HHHHcCCCEEEECCCCCc-----cccce-------eecCCC-------cC-HHHHHHHHHHHhccCCCeEEEcCCCCCHH
Confidence 889999999987332111 00000 001111 11 255555555532 269999999999999
Q ss_pred HHHHHHHhCCCEEEEehhhh
Q psy16199 730 VALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 730 da~~~l~~GA~~Vqv~ta~l 749 (842)
|+.++|++||++|++|+++-
T Consensus 345 di~kAla~GA~~v~~G~~~a 364 (486)
T PRK05567 345 DIAKALAAGASAVMLGSMLA 364 (486)
T ss_pred HHHHHHHhCCCEEEECcccc
Confidence 99999999999999999984
No 206
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.61 E-value=5.9e-07 Score=102.74 Aligned_cols=137 Identities=17% Similarity=0.127 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHHHHHH
Q psy16199 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAKAAYE 655 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~ 655 (842)
++..+.++.+.++|+|.|-+..+.+| ++.+.+.++++++.. ++||++ .|. ...+-++.|.+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~--------------~~~~~~~i~~i~~~~~~~~vi~---g~~-~t~~~~~~l~~ 285 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGH--------------QVKMISAIKAVRALDLGVPIVA---GNV-VSAEGVRDLLE 285 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCC--------------cHHHHHHHHHHHHHCCCCeEEE---ecc-CCHHHHHHHHH
Confidence 34556666666789999999765433 478899999999875 799999 322 33566888999
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHH
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFI 735 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l 735 (842)
+|+|+|.+.-..++.- ++ ...+.+| .+. ..++..+.+..+.. ++|||+.|||.++.|+.++|
T Consensus 286 ~G~d~i~vg~g~Gs~~-----tt-------r~~~~~g----~~~-~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kal 347 (475)
T TIGR01303 286 AGANIIKVGVGPGAMC-----TT-------RMMTGVG----RPQ-FSAVLECAAEARKL-GGHVWADGGVRHPRDVALAL 347 (475)
T ss_pred hCCCEEEECCcCCccc-----cC-------ccccCCC----Cch-HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHH
Confidence 9999998743322110 00 0011121 111 11222222233444 69999999999999999999
Q ss_pred HhCCCEEEEehhhh
Q psy16199 736 QAGAHAVQICSAVQ 749 (842)
Q Consensus 736 ~~GA~~Vqv~ta~l 749 (842)
.+||++||+++.|-
T Consensus 348 a~GA~~vm~g~~~a 361 (475)
T TIGR01303 348 AAGASNVMVGSWFA 361 (475)
T ss_pred HcCCCEEeechhhc
Confidence 99999999999885
No 207
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.61 E-value=1.5e-06 Score=90.33 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=111.5
Q ss_pred HHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCE
Q psy16199 581 ELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADG 660 (842)
Q Consensus 581 ~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~ 660 (842)
+-|+.++++||-++--==--|..++..| |-+=.++|+.+ ++|++.+++||+.|+.-+. ..=|+.|.+.|+|.
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~g-gv~R~~~p~~I----~~I~~~V~iPVig~~kigh---~~Ea~~L~~~GvDi 92 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRASG-GVARMSDPKMI----KEIMDAVSIPVMAKVRIGH---FVEAQILEALGVDY 92 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhcC-CeeecCCHHHH----HHHHHhCCCCEEEEeeccH---HHHHHHHHHcCCCE
Confidence 3466778889877655434565444333 44445778665 5566677999999987643 33478999999999
Q ss_pred EEEecCCCcccc-CCCCC--CCCCcccC------------CC----ccccCCCCCC------------------------
Q psy16199 661 VSAINTVSGLMS-LSADG--NPWPAVGT------------KK----LTTYGGVSGN------------------------ 697 (842)
Q Consensus 661 i~v~nt~~~~~~-~~~~~--~~~p~~~~------------~~----~~~~gG~sG~------------------------ 697 (842)
|..|....+... +.+.. -..|.+-. .+ ++..-|+.|.
T Consensus 93 IDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~ 172 (287)
T TIGR00343 93 IDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEE 172 (287)
T ss_pred EEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccch
Confidence 998776543111 00000 01121110 00 0111122332
Q ss_pred -------ccccchHHHHHHHHhhCCCCcEE--EecCcCCHHHHHHHHHhCCCEEEEehhhhcc-Cc-hhHHHHHHHHHH
Q psy16199 698 -------ATRPMGLKAVSSIAKMFPNFPIL--GIGGIDSADVALQFIQAGAHAVQICSAVQNQ-DF-TVVDDYITGLQT 765 (842)
Q Consensus 698 -------~~~p~al~~v~~i~~~~~~ipIi--~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~-gp-~~~~~i~~~l~~ 765 (842)
.-....++.++++++.. ++||+ +.|||.|++|+..++.+||++|.|+|+++.. +| ...+.+.+.+..
T Consensus 173 ~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 173 EDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred hHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 00235678889998876 69998 9999999999999999999999999999952 23 344555555544
No 208
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.60 E-value=4.7e-07 Score=104.27 Aligned_cols=138 Identities=22% Similarity=0.168 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHH
Q psy16199 576 KDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYE 655 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~ 655 (842)
.++..+-++.+.++|+|.|++. +.| . ..+.+.+.++++++..+.++.|+-. |+.. .+-++.|.+
T Consensus 240 ~~~~~~ra~~Lv~aGvd~i~vd-~a~-g------------~~~~~~~~i~~ir~~~~~~~~V~aG-nV~t-~e~a~~li~ 303 (502)
T PRK07107 240 TRDYAERVPALVEAGADVLCID-SSE-G------------YSEWQKRTLDWIREKYGDSVKVGAG-NVVD-REGFRYLAE 303 (502)
T ss_pred hhhHHHHHHHHHHhCCCeEeec-Ccc-c------------ccHHHHHHHHHHHHhCCCCceEEec-cccC-HHHHHHHHH
Confidence 3456666777777899999997 333 1 1245578899999987655666552 2322 355788889
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhh-------CC-CCcEEEecCcCC
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKM-------FP-NFPILGIGGIDS 727 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~-------~~-~ipIi~~GGI~t 727 (842)
+|||+|.+.|.-++. -++ +...| .|.+ .+..+.+++++ .. ++|||+.|||++
T Consensus 304 aGAd~I~vg~g~Gs~-----c~t---------r~~~~--~g~~----~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~ 363 (502)
T PRK07107 304 AGADFVKVGIGGGSI-----CIT---------REQKG--IGRG----QATALIEVAKARDEYFEETGVYIPICSDGGIVY 363 (502)
T ss_pred cCCCEEEECCCCCcC-----ccc---------ccccC--CCcc----HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCc
Confidence 999999997754421 001 10111 1111 24444444442 22 389999999999
Q ss_pred HHHHHHHHHhCCCEEEEehhhh
Q psy16199 728 ADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 728 ~~da~~~l~~GA~~Vqv~ta~l 749 (842)
.-|+.++|++|||+||+|+.|-
T Consensus 364 ~gdi~KAla~GA~~vm~G~~~a 385 (502)
T PRK07107 364 DYHMTLALAMGADFIMLGRYFA 385 (502)
T ss_pred hhHHHHHHHcCCCeeeeChhhh
Confidence 9999999999999999999885
No 209
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.59 E-value=1.6e-06 Score=87.73 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh-------------
Q psy16199 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI------------- 643 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~------------- 643 (842)
++..++++++.++|+|+|++- .+.+-+.+.+.++++++|+.+++||++=- .+.
T Consensus 11 e~~~~ia~~v~~~gtDaI~VG-------------GS~gvt~~~~~~~v~~ik~~~~lPvilfp-~~~~~i~~~aD~~~~~ 76 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVG-------------GSLGIVESNLDQTVKKIKKITNLPVILFP-GNVNGLSRYADAVFFM 76 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEc-------------CcCCCCHHHHHHHHHHHHhhcCCCEEEEC-CCccccCcCCCEEEEE
Confidence 667778888999999999993 33456889999999999999999999832 211
Q ss_pred -----hc-------HHHHHHHHHHCCC----CEEEEecCCCccccCCCCCCCCCcccCCCc-------cccC-------C
Q psy16199 644 -----TN-------ITDIAKAAYEGKA----DGVSAINTVSGLMSLSADGNPWPAVGTKKL-------TTYG-------G 693 (842)
Q Consensus 644 -----~~-------~~~~a~~~~~~G~----d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~-------~~~g-------G 693 (842)
.+ -.+.+..+++.|. .|-.+.|.-.....+ -+....|.+..+.. ..+| .
T Consensus 77 sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v-~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~ 155 (205)
T TIGR01769 77 SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYV-GKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEA 155 (205)
T ss_pred EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeee-cCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 01 1222323356663 244455532211111 11112222211000 0011 1
Q ss_pred CCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
.||. ..+...++++++++.+ ++|++..|||+|.+++.+++.+|||.|.+|
T Consensus 156 ~sGa-~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 156 GSGA-SYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCC-CCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 2555 4667799999999998 799999999999999999999999999875
No 210
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.59 E-value=5.5e-06 Score=86.14 Aligned_cols=182 Identities=26% Similarity=0.265 Sum_probs=120.0
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCCCC-------CCCCcccCCCCHHHHHHHHHHHHhh-CC
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHGMG-------ERGMGLACGQDPEMVRNISLWVRSS-VK 632 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~~~-------~~~~G~~~~~~~~~~~~ii~~v~~~-~~ 632 (842)
.-+|.-+++|+ +.+...++++.+.+.|||+|||-+ |-|-.-+ ++-+ .=+...+.+.++++.+++. .+
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL--~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRAL--AAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCC
Confidence 35788888887 789999999999999999999975 5552111 1100 0036788899999999955 78
Q ss_pred ccEEEEecCChh---cHHHHHHHHHHCCCCEEEEecCCCccc----------cC-----CCCCC---CCCcccCC-----
Q psy16199 633 IPFFVKLTPNIT---NITDIAKAAYEGKADGVSAINTVSGLM----------SL-----SADGN---PWPAVGTK----- 686 (842)
Q Consensus 633 ~Pv~vKl~p~~~---~~~~~a~~~~~~G~d~i~v~nt~~~~~----------~~-----~~~~~---~~p~~~~~----- 686 (842)
+|+++=.--|.- .+..+.+.+.+.|+||+.+-.-..... ++ -..++ +...+...
T Consensus 95 ~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFi 174 (265)
T COG0159 95 VPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFI 174 (265)
T ss_pred CCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 999886633321 567788888888888888743110000 00 00000 00000000
Q ss_pred CccccCCCCCCccc--cchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 687 KLTTYGGVSGNATR--PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 687 ~~~~~gG~sG~~~~--p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
..-..-|..|.... ...-+.++++++.. ++||...=||++++++.++... ||+|-|||+++
T Consensus 175 Y~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV 237 (265)
T COG0159 175 YYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIV 237 (265)
T ss_pred EEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHH
Confidence 00011123343332 12567888888887 8999999999999999999999 99999999998
No 211
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.58 E-value=1.1e-06 Score=92.29 Aligned_cols=185 Identities=25% Similarity=0.262 Sum_probs=113.9
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCCCCC----CC-CcccCCCCHHHHHHHHHHHH-hhCCcc
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHGMGE----RG-MGLACGQDPEMVRNISLWVR-SSVKIP 634 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~~~~----~~-~G~~~~~~~~~~~~ii~~v~-~~~~~P 634 (842)
..+|.-+++|+ +.+.+.++++.+.+.|+|.|||-+ |-|..-+. .. --..-+.+.+.+.++++.++ +..++|
T Consensus 10 ~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 10 KALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp TEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 56888888886 578899999999999999999986 44532110 00 00001357788889999999 778999
Q ss_pred EEEEecCCh---hcHHHHHHHHHHCCCCEEEEecCCCc----------cccC------CCCC--CCCCcccC--C---Cc
Q psy16199 635 FFVKLTPNI---TNITDIAKAAYEGKADGVSAINTVSG----------LMSL------SADG--NPWPAVGT--K---KL 688 (842)
Q Consensus 635 v~vKl~p~~---~~~~~~a~~~~~~G~d~i~v~nt~~~----------~~~~------~~~~--~~~p~~~~--~---~~ 688 (842)
+++=.--|. -.+.++++.+.++|+||+++-.-... ..++ ...+ .+...+.. + ..
T Consensus 90 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~ 169 (259)
T PF00290_consen 90 IVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYL 169 (259)
T ss_dssp EEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEE
T ss_pred EEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEe
Confidence 988542221 14567888888888888877331100 0000 0000 00000000 0 00
Q ss_pred cccCCCCCCc--cccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 689 TTYGGVSGNA--TRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 689 ~~~gG~sG~~--~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
-..-|..|.. +.....++++++++.. ++||...=||++++++.+.. .|||+|-|||+++.
T Consensus 170 vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 170 VSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp ESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred eccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 0111223332 2234568889998888 89999999999999999988 99999999999993
No 212
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.58 E-value=1.9e-06 Score=93.87 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=114.2
Q ss_pred ccccCCcccccCCCCCCCCCChhHHHHhhhhhhCc---cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 463 KKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQ---AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 463 ~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~~G~---~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
+..+.|||++|||+|++ .+.+..+.++-|| +++|||+.|+.+||+ |+++.. .+++|+ ||++|.|.
T Consensus 6 G~~~~nP~~~aag~~~~-----~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~--~~~~n~----~g~~~~g~ 74 (296)
T cd04740 6 GLRLKNPVILASGTFGF-----GEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNA----IGLQNPGV 74 (296)
T ss_pred CEEcCCCCEECCCCCCC-----HHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC--cceeee----cCCCCcCH
Confidence 45689999999999998 8888888877435 999999999999999 788877 678888 88876553
Q ss_pred hhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHH
Q psy16199 539 QAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPE 618 (842)
Q Consensus 539 dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~ 618 (842)
+ .|.+..+....
T Consensus 75 ~--------------------------------------~~~~~~~~~~~------------------------------ 86 (296)
T cd04740 75 E--------------------------------------AFLEELLPWLR------------------------------ 86 (296)
T ss_pred H--------------------------------------HHHHHHHHHhh------------------------------
Confidence 3 22222221111
Q ss_pred HHHHHHHHHHhhCCccEEEEecC-ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCC
Q psy16199 619 MVRNISLWVRSSVKIPFFVKLTP-NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGN 697 (842)
Q Consensus 619 ~~~~ii~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~ 697 (842)
..+.|+++=+.. +.+++.+.|+.++++|+|+|.+. +.. |... ..|..-+.
T Consensus 87 -----------~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN--~~c-----------P~~~-----~~g~~~~~ 137 (296)
T cd04740 87 -----------EFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELN--ISC-----------PNVK-----GGGMAFGT 137 (296)
T ss_pred -----------cCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEE--CCC-----------CCCC-----CCcccccC
Confidence 123466666643 34578889999999999999883 111 1110 01111111
Q ss_pred ccccchHHHHHHHHhhCCCCcEEE--ecCcCCHHHHHHHH-HhCCCEEEEe
Q psy16199 698 ATRPMGLKAVSSIAKMFPNFPILG--IGGIDSADVALQFI-QAGAHAVQIC 745 (842)
Q Consensus 698 ~~~p~al~~v~~i~~~~~~ipIi~--~GGI~t~~da~~~l-~~GA~~Vqv~ 745 (842)
......+.++.+++.+ ++||+. +..+.+..++.+.+ ++||+++.+.
T Consensus 138 -~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 138 -DPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred -CHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 1245567888888887 688875 33444455555544 5999998763
No 213
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.57 E-value=1.5e-06 Score=94.62 Aligned_cols=146 Identities=21% Similarity=0.312 Sum_probs=91.3
Q ss_pred ceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecCCh
Q psy16199 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTPNI 643 (842)
Q Consensus 565 pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~~ 643 (842)
.+.+++ +...+++..+.. +.++|+|+|-|.. .|. ..+.+.+.++++|+... +||++ .|+
T Consensus 98 ~V~aav--g~~~~~~er~~~-L~~agvD~ivID~--a~g------------~s~~~~~~ik~ik~~~~~~~via---GNV 157 (352)
T PF00478_consen 98 LVAAAV--GTRDDDFERAEA-LVEAGVDVIVIDS--AHG------------HSEHVIDMIKKIKKKFPDVPVIA---GNV 157 (352)
T ss_dssp CEEEEE--ESSTCHHHHHHH-HHHTT-SEEEEE---SST------------TSHHHHHHHHHHHHHSTTSEEEE---EEE
T ss_pred eEEEEe--cCCHHHHHHHHH-HHHcCCCEEEccc--cCc------------cHHHHHHHHHHHHHhCCCceEEe---ccc
Confidence 456666 444555555444 5557999998874 221 23566788999998875 88876 333
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.. .+.++.|.++|+|+|.+.=..++ ... .+...| -|.+ .-.|+.-+++.++.+ ++|||+.|
T Consensus 158 ~T-~e~a~~L~~aGad~vkVGiGpGs-----------iCt---Tr~v~G--vG~P-Q~tAv~~~a~~a~~~-~v~iIADG 218 (352)
T PF00478_consen 158 VT-YEGAKDLIDAGADAVKVGIGPGS-----------ICT---TREVTG--VGVP-QLTAVYECAEAARDY-GVPIIADG 218 (352)
T ss_dssp -S-HHHHHHHHHTT-SEEEESSSSST-----------TBH---HHHHHS--BSCT-HHHHHHHHHHHHHCT-TSEEEEES
T ss_pred CC-HHHHHHHHHcCCCEEEEeccCCc-----------ccc---cccccc--cCCc-HHHHHHHHHHHhhhc-cCceeecC
Confidence 22 46688899999999999210000 000 000001 1222 123444455555666 69999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
||.+.-|+.++|.+|||+||+|+.|-
T Consensus 219 Gi~~sGDi~KAla~GAd~VMlG~llA 244 (352)
T PF00478_consen 219 GIRTSGDIVKALAAGADAVMLGSLLA 244 (352)
T ss_dssp S-SSHHHHHHHHHTT-SEEEESTTTT
T ss_pred CcCcccceeeeeeecccceeechhhc
Confidence 99999999999999999999999887
No 214
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.56 E-value=1.6e-06 Score=92.07 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=105.2
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHH-hhC--Cc-----cE
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVR-SSV--KI-----PF 635 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~-~~~--~~-----Pv 635 (842)
.|++++=.. .+.++..++.. +|++.+.++. .+..+|+.+.++.+..- +.+ .+ ++
T Consensus 75 ~pv~~~GGi-~s~~d~~~~~~----~Ga~~vivgt-------------~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~ 136 (254)
T TIGR00735 75 IPLTVGGGI-KSIEDVDKLLR----AGADKVSINT-------------AAVKNPELIYELADRFGSQCIVVAIDAKRVYV 136 (254)
T ss_pred CCEEEECCC-CCHHHHHHHHH----cCCCEEEECh-------------hHhhChHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 566654321 35666655543 4899998852 22367888888877652 211 11 21
Q ss_pred ------EEEecCC----hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHH
Q psy16199 636 ------FVKLTPN----ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLK 705 (842)
Q Consensus 636 ------~vKl~p~----~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~ 705 (842)
-||+..- -.+..++++.+++.|++.|+++... ..|-.+|. .++
T Consensus 137 ~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~----------------------~~g~~~g~-----~~~ 189 (254)
T TIGR00735 137 NSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMD----------------------KDGTKSGY-----DLE 189 (254)
T ss_pred CCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcC----------------------cccCCCCC-----CHH
Confidence 3454332 2367899999999999999996421 11112232 278
Q ss_pred HHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHHHHHHHhcCC
Q psy16199 706 AVSSIAKMFPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGLQTLLYLKST 772 (842)
Q Consensus 706 ~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~ 772 (842)
++.++++.. ++|||++|||.+.+|+.+++..| |++|++++++...... +. ++.++|...|+
T Consensus 190 ~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~-~~----~~~~~~~~~gi 251 (254)
T TIGR00735 190 LTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT-IG----EVKEYLAERGI 251 (254)
T ss_pred HHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC-HH----HHHHHHHHCCC
Confidence 889999887 79999999999999999999988 9999999999854332 33 44555555544
No 215
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.55 E-value=1.3e-06 Score=93.89 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=93.0
Q ss_pred ccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 563 LSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 563 ~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
++|+-++++.-.+.+.+.+..+.+.+.+.+.+.+.++.|. + ++.+++ .++.|+..++.
T Consensus 55 dkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~-------------------~-~~~lk~-~Gi~v~~~v~s- 112 (320)
T cd04743 55 DKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD-------------------Q-ARALEA-IGISTYLHVPS- 112 (320)
T ss_pred CCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChH-------------------H-HHHHHH-CCCEEEEEeCC-
Confidence 5898888853212233555666666778999988765552 1 244554 47888876643
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCcc-ccchHHHHHHHHhhC-----CC
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT-RPMGLKAVSSIAKMF-----PN 716 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~-~p~al~~v~~i~~~~-----~~ 716 (842)
...|+.+++.|+|+|++-+. +.||+-|+.- .++.-..+..+.+.. .+
T Consensus 113 ----~~~A~~a~~~GaD~vVaqG~-----------------------EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~ 165 (320)
T cd04743 113 ----PGLLKQFLENGARKFIFEGR-----------------------ECGGHVGPRSSFVLWESAIDALLAANGPDKAGK 165 (320)
T ss_pred ----HHHHHHHHHcCCCEEEEecC-----------------------cCcCCCCCCCchhhHHHHHHHHHHhhcccccCC
Confidence 35589999999999999442 3566655211 111111222222211 16
Q ss_pred CcEEEecCcCCHHHHHHHHHhCC--------CEEEEehhhhcc
Q psy16199 717 FPILGIGGIDSADVALQFIQAGA--------HAVQICSAVQNQ 751 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~GA--------~~Vqv~ta~l~~ 751 (842)
+|||+.|||.+++.+..++.+|| ++|||||.|+.-
T Consensus 166 iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 166 IHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred ccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 99999999999999999999988 799999999953
No 216
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.55 E-value=2e-06 Score=93.26 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred ccccCCcccccCCCC-CCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccC-------CccccCCcccc
Q psy16199 463 KKLNSDGVSLQNGLP-KRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALIND-------DMCINCGKCYM 531 (842)
Q Consensus 463 ~~~~~~~~g~~~g~d-k~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~-------~~~in~~~c~~ 531 (842)
+..+.|||++|+|++ |+ .+.+..+.+. +|+ .++|+|+.|+++||+ |++++... .+++|+ +
T Consensus 5 G~~~~nPv~~aag~~~~~-----~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~----~ 75 (289)
T cd02810 5 GLKLKNPFGVAAGPLLKT-----GELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS----F 75 (289)
T ss_pred CEECCCCCEeCCCCCCCC-----HHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec----C
Confidence 567999999999999 78 8888888876 566 999999999999999 78876642 333443 3
Q ss_pred CCCccchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcc
Q psy16199 532 ACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGL 611 (842)
Q Consensus 532 Gfn~~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~ 611 (842)
|++|.| .+.|.
T Consensus 76 g~~~~g--------------------------------------~~~~~------------------------------- 86 (289)
T cd02810 76 GLPNLG--------------------------------------LDVWL------------------------------- 86 (289)
T ss_pred CCCCcC--------------------------------------HHHHH-------------------------------
Confidence 333221 22222
Q ss_pred cCCCCHHHHHHHHHHHHhh-CCccEEEEecC-ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCcc
Q psy16199 612 ACGQDPEMVRNISLWVRSS-VKIPFFVKLTP-NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689 (842)
Q Consensus 612 ~~~~~~~~~~~ii~~v~~~-~~~Pv~vKl~p-~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~ 689 (842)
+.+...++. .+.|+++=+.. +.+++.+.++.+.++|+|+|.+.-.- |..
T Consensus 87 ----------~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~c-------------P~~------ 137 (289)
T cd02810 87 ----------QDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSC-------------PNV------ 137 (289)
T ss_pred ----------HHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCC-------------CCC------
Confidence 222222222 35788888755 35688899999999999999883211 100
Q ss_pred ccCCCCCCccccchHHHHHHHHhhCCCCcEEE-ecCcCCHH---HHHHHH-HhCCCEEEEehh
Q psy16199 690 TYGGVSGNATRPMGLKAVSSIAKMFPNFPILG-IGGIDSAD---VALQFI-QAGAHAVQICSA 747 (842)
Q Consensus 690 ~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~-~GGI~t~~---da~~~l-~~GA~~Vqv~ta 747 (842)
..+..-........+.++++++.+ ++||+. .++..+.+ ++.+.+ ++|||++.+...
T Consensus 138 -~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 138 -GGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred -CCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 000000001224467788888887 788775 33344533 333433 489999988643
No 217
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.54 E-value=2.5e-06 Score=86.83 Aligned_cols=140 Identities=20% Similarity=0.170 Sum_probs=105.0
Q ss_pred cceEEEeccCCC----HhHHHHHHHHHhhcCcCEEEEec--cCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh--CCccE
Q psy16199 564 SILIASIMCTYN----KDDWLELSKKTEKAGADALELNL--SCPHGMGERGMGLACGQDPEMVRNISLWVRSS--VKIPF 635 (842)
Q Consensus 564 ~pvi~si~~g~~----~e~~~~~a~~~~~agaD~ielN~--scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~--~~~Pv 635 (842)
.|+++.++. .+ .++..+.++.+.++|||++.+.. .++. .++.+.+.+.++.+.+. .++|+
T Consensus 49 ~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 49 VPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLK-----------EGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHh-----------CCCHHHHHHHHHHHHHHhcCCceE
Confidence 689999964 34 68899999999999999999842 2211 12478888999999888 48999
Q ss_pred EEEecCChh----cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHH
Q psy16199 636 FVKLTPNIT----NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIA 711 (842)
Q Consensus 636 ~vKl~p~~~----~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~ 711 (842)
+++..|... .+.++++.+.+.|+++|..+.. ..++. ..+..+++++
T Consensus 117 ~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~--------------------------~~~~~----~~~~~~~~i~ 166 (201)
T cd00945 117 KVILETRGLKTADEIAKAARIAAEAGADFIKTSTG--------------------------FGGGG----ATVEDVKLMK 166 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC--------------------------CCCCC----CCHHHHHHHH
Confidence 999987443 4556666778899999987321 01111 1256667777
Q ss_pred hhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 712 KMFP-NFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 712 ~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
+.++ ++||+..||+.+.+++.+++.+||+++.++
T Consensus 167 ~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 167 EAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 7764 589999999999999999999999998653
No 218
>KOG3851|consensus
Probab=98.53 E-value=4.4e-07 Score=94.44 Aligned_cols=226 Identities=17% Similarity=0.215 Sum_probs=133.8
Q ss_pred cceeccccccCCCEEEEccCCCCCCCCCCCCCCc---cccCcee--hhcchHHHhhcccCCccCCCCCCCCCCCCCc-EE
Q psy16199 78 DITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLT---EEMGFYT--SKTFLPRVATSSKKGLCGGCKKESLPILKGT-VI 151 (842)
Q Consensus 78 ~v~~~~~~~~~yd~lVlAtGs~~~~~~~i~~G~~---~~~gv~~--~~~~l~~~~~~~~~~~c~~c~~~~~~~~~~k-Vv 151 (842)
.|..+++.++.||++|||+|.+ -+.-.|+ |+. +.|+|.+ +..+.+....... ....|+.....+.. +=
T Consensus 123 ~v~t~gg~eIsYdylviA~Giq-l~y~~Ik-Gl~Eal~tP~VcSnYSpkyvdk~y~~~~----~fk~GNAIfTfPntpiK 196 (446)
T KOG3851|consen 123 TVVTRGGEEISYDYLVIAMGIQ-LDYGKIK-GLVEALDTPGVCSNYSPKYVDKVYKELM----NFKKGNAIFTFPNTPIK 196 (446)
T ss_pred eEEccCCcEEeeeeEeeeeece-eccchhc-ChHhhccCCCcccccChHHHHHHHHHHH----hccCCceEEecCCCccc
Confidence 3446677888999999999987 3322333 332 2355543 2222222222111 11222222333333 44
Q ss_pred EEcCChhHHHHHHHHHH-cCCc-EEEEEEeecCccccCCHH---HH-HHHHhcCcEEecCCCceEEEccCCcEEEEEEEe
Q psy16199 152 VLGAGDTAFDCATSALR-CGAN-KVLVVFRKGCTNIRAVPE---EV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNR 225 (842)
Q Consensus 152 VIGgG~~g~e~A~~l~~-~G~~-~Vtlv~r~~~~~~~~~~~---~~-~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~ 225 (842)
.-|+=.-.+-++....| .|.+ ++.+++..+...+-..+. .+ +..++++|++.......+|.. +++. ..|++
T Consensus 197 CAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~-~~~~--AvFe~ 273 (446)
T KOG3851|consen 197 CAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRT-NDRK--AVFEN 273 (446)
T ss_pred cCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEec-cchh--hHHHh
Confidence 55555556666665544 4543 477777665322222222 22 234567888888888888863 3332 22332
Q ss_pred ecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCC-CCCCeEEeccCCCCc--h
Q psy16199 226 TEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMAT-SVPGVFCGGDTANLS--D 302 (842)
Q Consensus 226 ~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~T-s~~gVfa~GD~~~~~--~ 302 (842)
.. ..|...+++++++=+....++| +++... --.|..|++.||..++|. ..|+||++|||.+-| +
T Consensus 274 L~---------kPG~t~ei~yslLHv~Ppms~p--e~l~~s--~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK 340 (446)
T KOG3851|consen 274 LD---------KPGVTEEIEYSLLHVTPPMSTP--EVLANS--DLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK 340 (446)
T ss_pred cC---------CCCceeEEeeeeeeccCCCCCh--hhhhcC--cccCcccceecChhhhccccCCCceeeccccCCCchh
Confidence 21 1367788999998888777732 344433 234778999999888765 899999999998765 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q psy16199 303 TTVESVNDGKTAAWHIHKYIQEK 325 (842)
Q Consensus 303 ~~~~A~~~G~~aA~~I~~~L~~~ 325 (842)
+...+.+|....-.|+.+.++++
T Consensus 341 TaAAvaaq~~vv~~nl~~~m~g~ 363 (446)
T KOG3851|consen 341 TAAAVAAQSPVVDKNLTQVMQGK 363 (446)
T ss_pred hHHHHHhcCchhhhhHHHHhcCC
Confidence 55566677788888888888774
No 219
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.51 E-value=3e-06 Score=91.77 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=57.8
Q ss_pred ccccCCcccccCCC-CCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 463 KKLNSDGVSLQNGL-PKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 463 ~~~~~~~~g~~~g~-dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
+..+.|||++|+|+ ||+ ++.+..+.+. +|+ +++|||+.||+|||+ |+||+ ++.++|+ +||+|.|.
T Consensus 5 Gl~l~nPi~~Asg~~~~~-----~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~--~~~~~N~----~G~~n~g~ 73 (294)
T cd04741 5 GLTISPPLMNAAGPWCTT-----LEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAF--PLGSINS----LGLPNLGL 73 (294)
T ss_pred CeeCCCCCEECCCCCCCC-----HHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEec--Ccccccc----ccCCCcCH
Confidence 45689999999999 999 9999999886 444 999999999999999 88887 5678999 88887665
Q ss_pred hhhh
Q psy16199 539 QAIT 542 (842)
Q Consensus 539 dai~ 542 (842)
+...
T Consensus 74 ~~~~ 77 (294)
T cd04741 74 DYYL 77 (294)
T ss_pred HHHH
Confidence 4333
No 220
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.48 E-value=1.5e-06 Score=94.81 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=56.1
Q ss_pred ccccCCcccccCCCC-CCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 463 KKLNSDGVSLQNGLP-KRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 463 ~~~~~~~~g~~~g~d-k~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
+..+.|||++|+|+| ++ .+.+..+.+. +|+ +++|||+.||+|||+ |++|++ .+++|+ +||+|.|.
T Consensus 8 Gl~l~NPv~~AsG~~~~~-----~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~--~~~~N~----~Gl~n~g~ 76 (310)
T PRK02506 8 GFKFDNCLMNAAGVYCMT-----KEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTP--LGSINS----MGLPNLGF 76 (310)
T ss_pred CEECCCCCEeCCCCCCCC-----HHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECc--chhhcc----CCCCCcCH
Confidence 456899999999999 77 8888887766 566 999999999999999 888864 689999 88887665
Q ss_pred hh
Q psy16199 539 QA 540 (842)
Q Consensus 539 da 540 (842)
+.
T Consensus 77 ~~ 78 (310)
T PRK02506 77 DY 78 (310)
T ss_pred HH
Confidence 43
No 221
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.46 E-value=1.1e-06 Score=96.45 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCC
Q psy16199 615 QDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG 693 (842)
.+++.+.+.++.+|+.. .+||.||+... .....++..+.++|+|.|++.+.-+++-. -|.. ....
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~-~~~~~~~~~~~~ag~D~ItIDG~~GGTGA-------ap~~---~~d~--- 250 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAG-RGVEDIAAGAAKAGADFITIDGAEGGTGA-------APLT---SMDH--- 250 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-S-TTHHHHHHHHHHTT-SEEEEE-TT---SS-------EECC---HHHH---
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCC-CcHHHHHHhhhhccCCEEEEeCCCCCCCC-------Cchh---HHhh---
Confidence 78999999999999998 89999999763 34455556688999999999655333200 0000 0000
Q ss_pred CCCCccccchHHHHHH-HHhh-C-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 694 VSGNATRPMGLKAVSS-IAKM-F-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~-i~~~-~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
-|-|. ..++..+.+ +.+. + .++.++++||+.|+.|+.+++++|||+|.++|++|
T Consensus 251 -~GlP~-~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 251 -VGLPT-EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp -C---H-HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred -CCCcH-HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 12111 112222222 2111 1 24899999999999999999999999999999998
No 222
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.44 E-value=5.8e-06 Score=87.80 Aligned_cols=170 Identities=21% Similarity=0.196 Sum_probs=108.1
Q ss_pred cceEEEeccCCCHh--------HHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccE
Q psy16199 564 SILIASIMCTYNKD--------DWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF 635 (842)
Q Consensus 564 ~pvi~si~~g~~~e--------~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv 635 (842)
.|||+.+.+. ++. +..++|+..+++||++|-+..- + .-+ +.+ .+.++.+++.+++||
T Consensus 50 ~~vIaeik~~-sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte----~--~~f----~g~----~~~l~~v~~~v~iPv 114 (260)
T PRK00278 50 PAVIAEVKKA-SPSKGVIREDFDPVEIAKAYEAGGAACLSVLTD----E--RFF----QGS----LEYLRAARAAVSLPV 114 (260)
T ss_pred CeEEEEeeCC-CCCCCccCCCCCHHHHHHHHHhCCCeEEEEecc----c--ccC----CCC----HHHHHHHHHhcCCCE
Confidence 5899999863 333 3489999999999999966421 1 111 122 366777888899999
Q ss_pred EEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCC--CC---CCC-CCcccCCCcc------ccC----CCCCCc-
Q psy16199 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLS--AD---GNP-WPAVGTKKLT------TYG----GVSGNA- 698 (842)
Q Consensus 636 ~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~--~~---~~~-~p~~~~~~~~------~~g----G~sG~~- 698 (842)
+.|= .+.+.. -+..+.++|||+|.+..+..+...+. ++ .-+ .+.++.|... ..| |+++..
T Consensus 115 l~kd--fi~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 115 LRKD--FIIDPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred Eeee--ecCCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc
Confidence 9854 123444 47888899999999988762210000 00 000 0000000000 001 122211
Q ss_pred -cccchHHHHHHHHhhCCC-CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 699 -TRPMGLKAVSSIAKMFPN-FPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 699 -~~p~al~~v~~i~~~~~~-ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.....++...++.+..|+ .++|+.|||.|++|+.+++.+||++|-|||+++..
T Consensus 192 ~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 192 KTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred ccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 123346677788777764 69999999999999999999999999999999953
No 223
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.43 E-value=1.4e-06 Score=92.00 Aligned_cols=91 Identities=24% Similarity=0.300 Sum_probs=77.1
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++++.+++.|++.|++++.... |.. .+..++.++++++.+ ++||+++|
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~-----------------------~~~----~~~~~~~i~~i~~~~-~~pv~~~G 78 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITAS-----------------------SEG----RETMLDVVERVAEEV-FIPLTVGG 78 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcc-----------------------ccc----CcccHHHHHHHHHhC-CCCEEEeC
Confidence 48899999999999999999875321 111 233588999999998 69999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||.+.+|+.+++.+||+.|+++|+++ .+|+++.++.+.+
T Consensus 79 GI~s~~d~~~~l~~G~~~v~ig~~~~-~~p~~~~~i~~~~ 117 (243)
T cd04731 79 GIRSLEDARRLLRAGADKVSINSAAV-ENPELIREIAKRF 117 (243)
T ss_pred CCCCHHHHHHHHHcCCceEEECchhh-hChHHHHHHHHHc
Confidence 99999999999999999999999999 5699998887764
No 224
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.42 E-value=2.5e-06 Score=84.71 Aligned_cols=162 Identities=23% Similarity=0.288 Sum_probs=98.0
Q ss_pred HHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCE
Q psy16199 581 ELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADG 660 (842)
Q Consensus 581 ~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~ 660 (842)
+-|+.++++||-++-.==-.|...+..| |-+=+.||+.+++|..+ +.+||..|..- .++.+ |+.|+..|+|.
T Consensus 31 EQA~IAE~aGAvAVMaLervPaDiR~aG-GVaRMaDp~~i~eim~a----VsIPVMAKvRI--GH~~E-A~iLealgVD~ 102 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPADIRAAG-GVARMADPKMIEEIMDA----VSIPVMAKVRI--GHFVE-AQILEALGVDM 102 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHHHHhcc-CccccCCHHHHHHHHHh----cccceeeeeec--chhHH-HHHHHHhCCCc
Confidence 3466778888877654434675444444 55556899887777665 57999999975 34444 78999999999
Q ss_pred EEEecCCCccc-cCCCCC--CCCCcccCCC------ccccCC-----CCCCc---cc-----------------------
Q psy16199 661 VSAINTVSGLM-SLSADG--NPWPAVGTKK------LTTYGG-----VSGNA---TR----------------------- 700 (842)
Q Consensus 661 i~v~nt~~~~~-~~~~~~--~~~p~~~~~~------~~~~gG-----~sG~~---~~----------------------- 700 (842)
|.=+--+.+.. ...|+. -.-|.+-+.. |...-| ..|.+ .-
T Consensus 103 IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~ed 182 (296)
T COG0214 103 IDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTED 182 (296)
T ss_pred cccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHH
Confidence 98765443221 122221 1223221100 000000 01111 00
Q ss_pred ---------cchHHHHHHHHhhCCCCcE--EEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 701 ---------PMGLKAVSSIAKMFPNFPI--LGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 701 ---------p~al~~v~~i~~~~~~ipI--i~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
....+++.++++.- ++|| ++.|||.|+.|+.-++.+|||+|-|||++++.
T Consensus 183 el~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 183 ELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHHHhCChHHHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence 01123344444432 5665 68999999999999999999999999999843
No 225
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.42 E-value=7.8e-06 Score=83.53 Aligned_cols=164 Identities=18% Similarity=0.248 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh--------------
Q psy16199 578 DWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI-------------- 643 (842)
Q Consensus 578 ~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~-------------- 643 (842)
...+.++++.+.|.|+|-+ |++.+-..+.+.++++++|+.. +|+++ ...+.
T Consensus 15 ~~~~~~~~~~~~gtdai~v-------------GGS~~vt~~~~~~~v~~ik~~~-lPvil-fp~~~~~i~~~aDa~l~~s 79 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILI-------------GGSQGVTYEKTDTLIEALRRYG-LPIIL-FPSNPTNVSRDADALFFPS 79 (223)
T ss_pred ccHHHHHHHHhcCCCEEEE-------------cCCCcccHHHHHHHHHHHhccC-CCEEE-eCCCccccCcCCCEEEEEE
Confidence 3456777788889999988 4445567789999999999765 99997 32211
Q ss_pred -----------hcHHHHHHHHHHCCC----CEEEEecCCCccccCCCCCCCCCcccCCC--------ccccCC------C
Q psy16199 644 -----------TNITDIAKAAYEGKA----DGVSAINTVSGLMSLSADGNPWPAVGTKK--------LTTYGG------V 694 (842)
Q Consensus 644 -----------~~~~~~a~~~~~~G~----d~i~v~nt~~~~~~~~~~~~~~p~~~~~~--------~~~~gG------~ 694 (842)
..-.+.+..+.+.+. .|-.+.|.-.....+. +....|. +.+. ..-.|- +
T Consensus 80 vlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~-~a~~~p~-~~~~~aa~~~lA~~~~g~~~vYlE~ 157 (223)
T TIGR01768 80 VLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVT-KAKPIPY-DKEDLAAYAAMAEEMLGMPIIYLEA 157 (223)
T ss_pred eecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecc-cccccCC-CcHHHHHHHHHHHHHcCCcEEEEEe
Confidence 011234444444442 1444445321110000 0011100 0000 000010 2
Q ss_pred CCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHH
Q psy16199 695 SGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDY 759 (842)
Q Consensus 695 sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i 759 (842)
||.+-.|...+.++++++.++++||+..|||+|.+++.+++.+|||.|.+||.+.. +|.++.+.
T Consensus 158 gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~-dp~~~~~~ 221 (223)
T TIGR01768 158 GSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE-DVDKALET 221 (223)
T ss_pred cCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh-CHHHHHHh
Confidence 33333566688899999887569999999999999999999999999999999994 47776654
No 226
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.42 E-value=1.7e-05 Score=81.06 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=101.9
Q ss_pred EeccCCCHhHHHHHHHHHhhc-CcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcH
Q psy16199 569 SIMCTYNKDDWLELSKKTEKA-GADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNI 646 (842)
Q Consensus 569 si~~g~~~e~~~~~a~~~~~a-gaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~ 646 (842)
+..+-++.+|....++++.++ +-|.|-|-+- .|.+ +..|+..+.+..+.+.+. ++-++.=+++|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~---------Llpd~~~tv~aa~~L~~~-Gf~vlpyc~dd---- 133 (248)
T cd04728 68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKT---------LLPDPIETLKAAEILVKE-GFTVLPYCTDD---- 133 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccc---------cccCHHHHHHHHHHHHHC-CCEEEEEeCCC----
Confidence 333346899999999998876 4688887652 2322 235566555555555432 34444345554
Q ss_pred HHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcC
Q psy16199 647 TDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGID 726 (842)
Q Consensus 647 ~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~ 726 (842)
...|+++.+.|++.|-. .++ | + | ||..+. ..++++.+++.. ++|||..|||.
T Consensus 134 ~~~ar~l~~~G~~~vmP---lg~-----------p-I--------G--sg~Gi~--~~~~I~~I~e~~-~vpVI~egGI~ 185 (248)
T cd04728 134 PVLAKRLEDAGCAAVMP---LGS-----------P-I--------G--SGQGLL--NPYNLRIIIERA-DVPVIVDAGIG 185 (248)
T ss_pred HHHHHHHHHcCCCEeCC---CCc-----------C-C--------C--CCCCCC--CHHHHHHHHHhC-CCcEEEeCCCC
Confidence 46799999999999822 111 0 1 1 111111 166777888875 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEehhhhc-cCc-hhHHHHHHHHH
Q psy16199 727 SADVALQFIQAGAHAVQICSAVQN-QDF-TVVDDYITGLQ 764 (842)
Q Consensus 727 t~~da~~~l~~GA~~Vqv~ta~l~-~gp-~~~~~i~~~l~ 764 (842)
+++|+.+++++||++|.++|++.. .+| .+.+.+...++
T Consensus 186 tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 186 TPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred CHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999995 334 33445554443
No 227
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.42 E-value=2.1e-06 Score=97.26 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=103.0
Q ss_pred EEEEcCChhHHHHH-HHHH----HcCCcEEEEEEeecCccccCCH---HHHHHHHhcCcEEecCCCceEEEccCCcEEEE
Q psy16199 150 VIVLGAGDTAFDCA-TSAL----RCGANKVLVVFRKGCTNIRAVP---EEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM 221 (842)
Q Consensus 150 VvVIGgG~~g~e~A-~~l~----~~G~~~Vtlv~r~~~~~~~~~~---~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V 221 (842)
=+|++.+.+|+|.+ ..+. +.|.+ |+++.+.+. .++... ...+.+.+.|+++++++.++++...++++..+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~-V~~vp~~pp-slpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCP-VFELPTLPP-SVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCC-EEEeCCCCC-CCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 46788999999998 5554 46876 999987763 232221 12334567899999999999987555556544
Q ss_pred EEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHH-------hhc---------------------------C
Q psy16199 222 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL-------EAI---------------------------K 267 (842)
Q Consensus 222 ~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~-------~~l---------------------------~ 267 (842)
... +++...+.+|.||+|+|.. ....+. +.. .
T Consensus 296 ~~~-------------~g~~~~i~AD~VVLAtGrf-~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~ 361 (422)
T PRK05329 296 WTR-------------NHGDIPLRARHFVLATGSF-FSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQF 361 (422)
T ss_pred Eee-------------CCceEEEECCEEEEeCCCc-ccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhc
Confidence 321 2344579999999999987 343331 111 1
Q ss_pred CcccCCCCCeeeCCCCCCCCCCCeEEeccCCCCchhHH------HHHHHHHHHHHHHHHH
Q psy16199 268 PVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTV------ESVNDGKTAAWHIHKY 321 (842)
Q Consensus 268 gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~~~~~~~------~A~~~G~~aA~~I~~~ 321 (842)
|+.+|++ ...+| ...++.++||||+|++.+++..+. .|+..|..||..|.+.
T Consensus 362 GV~~d~~-~~p~~-~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 362 GVATDAT-LRPLD-SQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CceECCC-cCccc-CCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 4444443 33344 345677999999999998765553 5788888888888654
No 228
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.40 E-value=1e-05 Score=88.10 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=114.4
Q ss_pred ccccCCcccccCC-CCCCCCCChhHHHHhhhhhhCc---cccccccC-ccCCCcc-eeEeeccCCccccCCccccCCCcc
Q psy16199 463 KKLNSDGVSLQNG-LPKRQINTPVETILSVKDVIGQ---AVQRVTNY-TELDNKK-QVVALINDDMCINCGKCYMACNDS 536 (842)
Q Consensus 463 ~~~~~~~~g~~~g-~dk~~~~~~~~~~~~l~~~~G~---~~g~vt~~-~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~ 536 (842)
+..+.|||++|+| |+++ .+.+..+.++ || +++|||+. ||.|||+ |+++++.+.. |+ +||+|.
T Consensus 8 Gl~l~nPi~~aag~~~~~-----~~~~~~~~~~-G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~--n~----~g~~n~ 75 (299)
T cd02940 8 GIKFPNPFGLASAPPTTS-----YPMIRRAFEA-GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGR--GQ----IGFNNI 75 (299)
T ss_pred CEEcCCCCEeCCcCCCCC-----HHHHHHHHHh-CCCEEEeccccCcCCCCCCCCCeEEEeCCCch--hc----ccccCC
Confidence 5679999999998 5999 8999998877 65 99999999 9999998 8999887643 77 888865
Q ss_pred chhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCC
Q psy16199 537 GYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQD 616 (842)
Q Consensus 537 G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~ 616 (842)
++. + ....+.|.+..+++..
T Consensus 76 e~~-----------------------------s---~~~~~~~~~~~~~~~~---------------------------- 95 (299)
T cd02940 76 ELI-----------------------------S---EKPLEYWLKEIRELKK---------------------------- 95 (299)
T ss_pred ccc-----------------------------c---ccCHHHHHHHHHHHHh----------------------------
Confidence 411 0 1224444443333221
Q ss_pred HHHHHHHHHHHHhhC-CccEEEEecC--ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCC
Q psy16199 617 PEMVRNISLWVRSSV-KIPFFVKLTP--NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693 (842)
Q Consensus 617 ~~~~~~ii~~v~~~~-~~Pv~vKl~p--~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG 693 (842)
.. +.|+++=+.. +.+++.+.++.+++.|+|+|.+ |-- -|... .+... |
T Consensus 96 -------------~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~iel-N~s------------CP~~~--~~~~~-G 146 (299)
T cd02940 96 -------------DFPDKILIASIMCEYNKEDWTELAKLVEEAGADALEL-NFS------------CPHGM--PERGM-G 146 (299)
T ss_pred -------------hCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEE-ECC------------CCCCC--CCCCC-c
Confidence 11 2465555522 4457788889998899999988 311 11110 00111 1
Q ss_pred CCCCccccchHHHHHHHHhhCCCCcEEEecC--cCCHHHHHH-HHHhCCCEEEEeh
Q psy16199 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGG--IDSADVALQ-FIQAGAHAVQICS 746 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG--I~t~~da~~-~l~~GA~~Vqv~t 746 (842)
..--.......++++.+++.+ ++||+.=-. ..+..++.+ +.++||++|.+..
T Consensus 147 ~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 147 AAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred hhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 111112345567788888776 678776533 223334444 4459999997543
No 229
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.40 E-value=9.6e-06 Score=80.24 Aligned_cols=154 Identities=25% Similarity=0.273 Sum_probs=105.6
Q ss_pred ccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEE-eccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEec
Q psy16199 563 LSILIASIMCTYNKDDWLELSKKTEKAGADALEL-NLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLT 640 (842)
Q Consensus 563 ~~pvi~si~~g~~~e~~~~~a~~~~~agaD~iel-N~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~ 640 (842)
+.|+.+|- -+++.|..+++ +|||.||| |+.|=...+ + --+.+.+.++.+..|+-. ++|+.|-++
T Consensus 61 ~lPICVSa---Vep~~f~~aV~----AGAdliEIGNfDsFY~qG-r------~f~a~eVL~Lt~~tR~LLP~~~LsVTVP 126 (242)
T PF04481_consen 61 NLPICVSA---VEPELFVAAVK----AGADLIEIGNFDSFYAQG-R------RFSAEEVLALTRETRSLLPDITLSVTVP 126 (242)
T ss_pred CCCeEeec---CCHHHHHHHHH----hCCCEEEecchHHHHhcC-C------eecHHHHHHHHHHHHHhCCCCceEEecC
Confidence 46888875 47888887654 59999999 666542111 1 146788889999998875 678888764
Q ss_pred C--ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccc-cchHHHHHHHHhhCCCC
Q psy16199 641 P--NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATR-PMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 641 p--~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~-p~al~~v~~i~~~~~~i 717 (842)
- .+++-.++|..|++.|+|-|--=+.+.+ . ...+|..|--.+ -.++...+.|.+.+ ++
T Consensus 127 HiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss----------~--------p~~~g~lglIekaapTLAaay~ISr~v-~i 187 (242)
T PF04481_consen 127 HILPLDQQVQLAEDLVKAGADIIQTEGGTSS----------K--------PTSPGILGLIEKAAPTLAAAYAISRAV-SI 187 (242)
T ss_pred ccccHHHHHHHHHHHHHhCCcEEEcCCCCCC----------C--------CCCcchHHHHHHHhHHHHHHHHHHhcc-CC
Confidence 3 3457789999999999997654211111 1 112232221100 12466677888888 79
Q ss_pred cEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 718 PILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 718 pIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
||+..-||. .-.+=-++.+||++|.||+++=+
T Consensus 188 PVlcASGlS-~vT~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 188 PVLCASGLS-AVTAPMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred ceEeccCcc-hhhHHHHHHcCCcccchhHHhhh
Confidence 999999984 55566788899999999999863
No 230
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.38 E-value=2e-06 Score=91.30 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=76.9
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.|++++..... .. .+..+++++++++.+ ++||++.|
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~-----------------------~~----~~~n~~~i~~i~~~~-~~pv~~~G 81 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASS-----------------------EG----RTTMIDVVERTAETV-FIPLTVGG 81 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccc-----------------------cc----ChhhHHHHHHHHHhc-CCCEEEEC
Confidence 378899999999999999998763320 00 334589999999998 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||+|.+|+.+++.+||+.|+++|+++. +|++++++.+..
T Consensus 82 Gi~s~~d~~~~~~~Ga~~vivgt~~~~-~p~~~~~~~~~~ 120 (254)
T TIGR00735 82 GIKSIEDVDKLLRAGADKVSINTAAVK-NPELIYELADRF 120 (254)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChhHhh-ChHHHHHHHHHc
Confidence 999999999999999999999999994 599888876554
No 231
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=2e-05 Score=77.41 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=100.2
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEE--EE---------ecCC
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF--VK---------LTPN 642 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~--vK---------l~p~ 642 (842)
++++-...+|+.++..||-+|-+| + .+-++++++.+++||+ +| ++|.
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-----g-----------------v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITpt 87 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-----G-----------------VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPT 87 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-----c-----------------hhhHHHHHhhCCCCeEEEEecCCCCCCceeccc
Confidence 356778888888888999999987 1 1447789999999997 44 3444
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCC----CCCCc--------------------ccCCCccccCCCCCCc
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADG----NPWPA--------------------VGTKKLTTYGGVSGNA 698 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~----~~~p~--------------------~~~~~~~~~gG~sG~~ 698 (842)
+.+ .+.|.++|++-|.+=.|...+..=+++. ...|. ++.-+ +...||.+..
T Consensus 88 lke----Vd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IG-TTLsGYT~~~ 162 (229)
T COG3010 88 LKE----VDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIG-TTLSGYTGYT 162 (229)
T ss_pred HHH----HHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEe-cccccccCCC
Confidence 433 5677789999877766665443200000 00010 00001 2233444422
Q ss_pred c--ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 699 T--RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 699 ~--~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
. ...-+.+++++.+. ++++|+-|.+.|++.+.+++..||++|.||+|+-
T Consensus 163 ~~~~~pDf~lvk~l~~~--~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 163 EKPTEPDFQLVKQLSDA--GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCCCCCcHHHHHHHHhC--CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccC
Confidence 2 23457888888883 7999999999999999999999999999999998
No 232
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.32 E-value=3.5e-06 Score=89.48 Aligned_cols=91 Identities=25% Similarity=0.309 Sum_probs=76.9
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.|++++..... .+ .+..++.++++++.+ ++||+++|
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~--------------------~~-------~~~~~~~i~~i~~~~-~ipv~~~G 81 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASS--------------------EG-------RDTMLDVVERVAEQV-FIPLTVGG 81 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccc--------------------cc-------CcchHHHHHHHHHhC-CCCEEeeC
Confidence 478899999999999999997763310 01 234589999999998 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||+|.+|+.+++.+||+.|+++|+++. .|+++.++.+.+
T Consensus 82 Gi~s~~~~~~~l~~Ga~~Viigt~~l~-~p~~~~ei~~~~ 120 (253)
T PRK02083 82 GIRSVEDARRLLRAGADKVSINSAAVA-NPELISEAADRF 120 (253)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChhHhh-CcHHHHHHHHHc
Confidence 999999999999999999999999995 599888886664
No 233
>KOG2755|consensus
Probab=98.31 E-value=1.5e-06 Score=88.40 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=45.6
Q ss_pred EEEECCEEEEccccCcCChhHHhhcCCcccCCCCCeeeCCCCCCCCCCCeEEeccCCC
Q psy16199 242 IKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTAN 299 (842)
Q Consensus 242 ~~i~~D~Vi~a~G~~~~~~~l~~~l~gl~~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~ 299 (842)
..+.||.+++|+|.. |+.+++-.- .+.+.++|.+.|| +.|.|+.|++||+||...
T Consensus 267 ~qlt~d~ivSatgvt-pn~e~~~~~-~lq~~edggikvd-d~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 267 NQLTCDFIVSATGVT-PNSEWAMNK-MLQITEDGGIKVD-DAMETSLPDVFAAGDVCT 321 (334)
T ss_pred ceeeeeEEEeccccC-cCceEEecC-hhhhccccCeeeh-hhccccccceeeecceec
Confidence 367899999999999 565554332 4778889999999 799999999999999864
No 234
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.30 E-value=4.7e-05 Score=78.01 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=100.1
Q ss_pred EeccCCCHhHHHHHHHHHhhc-CcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcH
Q psy16199 569 SIMCTYNKDDWLELSKKTEKA-GADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNI 646 (842)
Q Consensus 569 si~~g~~~e~~~~~a~~~~~a-gaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~ 646 (842)
+..+-++.+|....++++.++ +-|.|-|-+- .|.+ +..|+..+.+-.+.+.+. ++-++.=+++|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~---------llpd~~~tv~aa~~L~~~-Gf~vlpyc~~d---- 133 (250)
T PRK00208 68 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKT---------LLPDPIETLKAAEILVKE-GFVVLPYCTDD---- 133 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC---------CCcCHHHHHHHHHHHHHC-CCEEEEEeCCC----
Confidence 333346899999999998875 4688877652 2322 124555555555554332 33444335554
Q ss_pred HHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcC
Q psy16199 647 TDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGID 726 (842)
Q Consensus 647 ~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~ 726 (842)
...++++.+.|++.|-. .++ | + | ||..+. ..+.++.+++.. ++|||..|||.
T Consensus 134 ~~~ak~l~~~G~~~vmP---lg~-----------p-I--------G--sg~gi~--~~~~i~~i~e~~-~vpVIveaGI~ 185 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMP---LGA-----------P-I--------G--SGLGLL--NPYNLRIIIEQA-DVPVIVDAGIG 185 (250)
T ss_pred HHHHHHHHHcCCCEeCC---CCc-----------C-C--------C--CCCCCC--CHHHHHHHHHhc-CCeEEEeCCCC
Confidence 46799999999999822 111 0 1 1 121111 155577887775 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEehhhhc-cCc-hhHHHHHHHHH
Q psy16199 727 SADVALQFIQAGAHAVQICSAVQN-QDF-TVVDDYITGLQ 764 (842)
Q Consensus 727 t~~da~~~l~~GA~~Vqv~ta~l~-~gp-~~~~~i~~~l~ 764 (842)
+++|+.+++++||++|.++|++.. .+| .+.+.+...++
T Consensus 186 tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 186 TPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred CHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999995 334 34455555444
No 235
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.30 E-value=1.4e-06 Score=94.65 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred ccccCCcccccCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccchh
Q psy16199 463 KKLNSDGVSLQNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGYQ 539 (842)
Q Consensus 463 ~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~d 539 (842)
+..+.|||++|+|+|++ .+.+..+.++ +|+ +++|||+.++.|||+ |+++.+++++++|+ +||+|.|++
T Consensus 8 Gl~l~nPi~~asG~~~~-----~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~----~G~~n~g~~ 78 (295)
T PF01180_consen 8 GLTLKNPIGLASGLDKN-----GEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNS----MGLPNPGLE 78 (295)
T ss_dssp TEEESSSEEE-TTSSTS-----SHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE-------S-BSHHH
T ss_pred CEEcCCCcEECCcCCCC-----chhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccc----cCCChHHHH
Confidence 56689999999999999 7888888887 455 999999999999999 89999999999999 898877765
Q ss_pred hhhc
Q psy16199 540 AITF 543 (842)
Q Consensus 540 ai~~ 543 (842)
....
T Consensus 79 ~~~~ 82 (295)
T PF01180_consen 79 YYLE 82 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 236
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.28 E-value=9.8e-06 Score=92.97 Aligned_cols=134 Identities=23% Similarity=0.230 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHHHHHH
Q psy16199 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAKAAYE 655 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~ 655 (842)
++..+.++.+.++|+|.|-+..+ |. .-..+.+.+++||+.. +++|++ .|+.. .+-++.|.+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a--~~------------~~~~~~~~i~~ik~~~p~~~v~a---gnv~t-~~~a~~l~~ 287 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTA--HG------------HQEKMLEALRAVRALDPGVPIVA---GNVVT-AEGTRDLVE 287 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEecc--CC------------ccHHHHHHHHHHHHHCCCCeEEe---eccCC-HHHHHHHHH
Confidence 34566677777789999888642 21 2367889999999876 678776 23322 456888899
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh---hCCCCcEEEecCcCCHHHHH
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK---MFPNFPILGIGGIDSADVAL 732 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~---~~~~ipIi~~GGI~t~~da~ 732 (842)
+|+|+|-+.=..++. -...++.|-. .| -+..+.++++ .. ++|||+-|||.++.|+.
T Consensus 288 aGad~v~vgig~gsi------------------ctt~~~~~~~-~p-~~~av~~~~~~~~~~-~~~via~ggi~~~~~~~ 346 (479)
T PRK07807 288 AGADIVKVGVGPGAM------------------CTTRMMTGVG-RP-QFSAVLECAAAAREL-GAHVWADGGVRHPRDVA 346 (479)
T ss_pred cCCCEEEECccCCcc------------------cccccccCCc-hh-HHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHH
Confidence 999999762110100 0011121111 11 2555555555 44 69999999999999999
Q ss_pred HHHHhCCCEEEEehhhh
Q psy16199 733 QFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 733 ~~l~~GA~~Vqv~ta~l 749 (842)
++|.+||++||+|+.|.
T Consensus 347 ~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 347 LALAAGASNVMIGSWFA 363 (479)
T ss_pred HHHHcCCCeeeccHhhc
Confidence 99999999999999997
No 237
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.24 E-value=1.7e-05 Score=87.75 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhCCccEEEEecC-ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCC
Q psy16199 617 PEMVRNISLWVRSSVKIPFFVKLTP-NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695 (842)
Q Consensus 617 ~~~~~~ii~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~s 695 (842)
.+.+.+.+..+++..++||++++.. +..++.++++.++++|+|+|.+ |-. .|.. .. +..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~iel-N~s------------cpp~------~~-~~~ 145 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALEL-NIY------------YLPT------DP-DIS 145 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEE-eCC------------CCCC------CC-CCc
Confidence 4555566666666678999999965 3457789999999999999988 210 0000 01 112
Q ss_pred CCccccchHHHHHHHHhhCCCCcEEEe--cCcCCHHHHHHHHH-hCCCEEEEehhh
Q psy16199 696 GNATRPMGLKAVSSIAKMFPNFPILGI--GGIDSADVALQFIQ-AGAHAVQICSAV 748 (842)
Q Consensus 696 G~~~~p~al~~v~~i~~~~~~ipIi~~--GGI~t~~da~~~l~-~GA~~Vqv~ta~ 748 (842)
|.......++.++++++.. ++||+.- +++.+..++.+++. +||++|-+...+
T Consensus 146 g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 146 GAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred cccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 2222234578889998887 7999876 45556677777665 999999876554
No 238
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.23 E-value=5e-05 Score=78.03 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=99.4
Q ss_pred ceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe-cCCh
Q psy16199 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL-TPNI 643 (842)
Q Consensus 565 pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl-~p~~ 643 (842)
.+++.+.. .+++.+ .++.+.++|||+|-++..+| +..+.++++.+++ .++++++-+ +|.
T Consensus 54 ~i~~d~k~-~d~~~~--~~~~~~~~Gad~i~vh~~~~---------------~~~~~~~i~~~~~-~g~~~~~~~~~~~- 113 (206)
T TIGR03128 54 KVLADLKT-MDAGEY--EAEQAFAAGADIVTVLGVAD---------------DATIKGAVKAAKK-HGKEVQVDLINVK- 113 (206)
T ss_pred EEEEEEee-ccchHH--HHHHHHHcCCCEEEEeccCC---------------HHHHHHHHHHHHH-cCCEEEEEecCCC-
Confidence 45655532 245544 35566678999999986443 1345677777776 488998875 552
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
+..+.++.+.+.|+|.|.+.+. +.+....+..++.++++++.++..+|...|
T Consensus 114 -t~~~~~~~~~~~g~d~v~~~pg---------------------------~~~~~~~~~~~~~i~~l~~~~~~~~i~v~G 165 (206)
T TIGR03128 114 -DKVKRAKELKELGADYIGVHTG---------------------------LDEQAKGQNPFEDLQTILKLVKEARVAVAG 165 (206)
T ss_pred -ChHHHHHHHHHcCCCEEEEcCC---------------------------cCcccCCCCCHHHHHHHHHhcCCCcEEEEC
Confidence 3455567778889998877221 111111233467788888877667777799
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
|| +.+++.+++.+||+.|.+||+++.. .. ..+..+.|+
T Consensus 166 GI-~~~n~~~~~~~Ga~~v~vGsai~~~-~d-~~~~~~~l~ 203 (206)
T TIGR03128 166 GI-NLDTIPDVIKLGPDIVIVGGAITKA-AD-PAEAARQIR 203 (206)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEeehhcCC-CC-HHHHHHHHH
Confidence 99 8999999999999999999998843 33 334444443
No 239
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.21 E-value=2.1e-05 Score=83.56 Aligned_cols=169 Identities=20% Similarity=0.218 Sum_probs=102.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc---------cc----------------------------CCHH-
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IR----------------------------AVPE- 190 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~---------~~----------------------------~~~~- 190 (842)
.|+|||||+.|+-+|..|++.|.+ |.++++..... ++ ....
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLK-VAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 499999999999999999999975 99999765210 00 0001
Q ss_pred ----HHHHHHhcCcEEecCCCceEEEccCC-cEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChh-HHh
Q psy16199 191 ----EVQLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND-VLE 264 (842)
Q Consensus 191 ----~~~~~~~~gV~i~~~~~v~~v~~~~~-~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~-l~~ 264 (842)
..+.+.+.|++++.++.++++...++ ++.++.........+|. ..+..++.++.||.|+|....... +.+
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~----~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL----HVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC----CCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 12234567999999999988864444 78877765321111110 123468999999999996522222 222
Q ss_pred hcC--Cccc--------CCCCCeeeCCCCCCCCCCCeEEeccCCC----Cc---hhHHHHHHHHHHHHHHHHHHHHh
Q psy16199 265 AIK--PVKL--------DKYGYPEVNYTTMATSVPGVFCGGDTAN----LS---DTTVESVNDGKTAAWHIHKYIQE 324 (842)
Q Consensus 265 ~l~--gl~~--------~~~G~i~vd~~~~~Ts~~gVfa~GD~~~----~~---~~~~~A~~~G~~aA~~I~~~L~~ 324 (842)
... +... +......|+ .+.+ =.||+|++|=++. .| +..-.=.-+|++||.-|...|..
T Consensus 182 ~~~~~~~~~~g~~~~~~~~~e~~v~~-~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 182 KGPELGIEVPGEKSMWAERGEKLVVE-NTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred HcCCcccccCCccccccCchHHHHHh-cCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 110 0100 111122233 2333 3899999996642 12 12223356899999999887753
No 240
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.20 E-value=1.3e-05 Score=89.89 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=116.4
Q ss_pred CCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~ 651 (842)
|....+|..-.+... .|.|.| +|. +..+. ..++.+.+++..+|+.. ..||.||+... ..+..++.
T Consensus 256 g~KV~~~IA~~R~~~-pG~~~I-----SP~--pHHDi-----ysieDLaqlI~dLk~~~~~~~I~VKlva~-~~v~~iaa 321 (485)
T COG0069 256 GEKVTPEIAKTRGSP-PGVGLI-----SPP--PHHDI-----YSIEDLAQLIKDLKEANPWAKISVKLVAE-HGVGTIAA 321 (485)
T ss_pred CccCCHHHHHhcCCC-CCCCCc-----CCC--Ccccc-----cCHHHHHHHHHHHHhcCCCCeEEEEEecc-cchHHHHh
Confidence 444556666665544 366543 331 11232 68899999999999986 46799999763 23344444
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC---CCCcEEEecCcCCH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF---PNFPILGIGGIDSA 728 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~---~~ipIi~~GGI~t~ 728 (842)
-..++++|.|++.+--+++ +. ++++.++ +.|-|. .+++..+.+.-... .++.|+++||+.|+
T Consensus 322 gvakA~AD~I~IdG~~GGT-GA----sP~~~~~---------~~GiP~-e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg 386 (485)
T COG0069 322 GVAKAGADVITIDGADGGT-GA----SPLTSID---------HAGIPW-ELGLAETHQTLVLNGLRDKVKLIADGGLRTG 386 (485)
T ss_pred hhhhccCCEEEEcCCCCcC-CC----CcHhHhh---------cCCchH-HHHHHHHHHHHHHcCCcceeEEEecCCccCH
Confidence 4889999999996543332 10 1111111 122221 12333333322222 24889999999999
Q ss_pred HHHHHHHHhCCCEEEEehhhh---------------------ccCc----------------hhHHHHHHHHHHHHHhcC
Q psy16199 729 DVALQFIQAGAHAVQICSAVQ---------------------NQDF----------------TVVDDYITGLQTLLYLKS 771 (842)
Q Consensus 729 ~da~~~l~~GA~~Vqv~ta~l---------------------~~gp----------------~~~~~i~~~l~~~m~~~g 771 (842)
.|+++++++||+.|.++|+.| .++| .++.-+.++++++|...|
T Consensus 387 ~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG 466 (485)
T COG0069 387 ADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALG 466 (485)
T ss_pred HHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988 1122 334456789999999999
Q ss_pred C-CccccCCC
Q psy16199 772 T-QLKGWDGQ 780 (842)
Q Consensus 772 ~-~i~~~~~~ 780 (842)
+ +++++.|+
T Consensus 467 ~~~l~el~g~ 476 (485)
T COG0069 467 KRSLSELIGR 476 (485)
T ss_pred CCCHHHHhcc
Confidence 9 99998876
No 241
>KOG0134|consensus
Probab=98.19 E-value=2e-05 Score=85.80 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=116.6
Q ss_pred hHHHHHHHHHhhcCcCEEEEe---------ccCCCCCCCC-CCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecC----
Q psy16199 577 DDWLELSKKTEKAGADALELN---------LSCPHGMGER-GMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTP---- 641 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN---------~scP~~~~~~-~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p---- 641 (842)
+-+..+++.+.++|+|.|||| |-+|++..+. .||.++..+-.+..|++.+|++++. --+++.++|
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~f 253 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEF 253 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhh
Confidence 445566666668999999998 3478544333 5999999999999999999999863 123333333
Q ss_pred -----ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC
Q psy16199 642 -----NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 642 -----~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ 716 (842)
..++....+...+..|.|.+-++|.......--+ .| +. |-....---+++.+.++..+.+
T Consensus 254 q~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i----~~------R~-----~~~~~~~~~~~f~e~~r~~~kg 318 (400)
T KOG0134|consen 254 QDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFI----EP------RQ-----STIAREAFFVEFAETIRPVFKG 318 (400)
T ss_pred hhccccccchHHHHHHHHhcccchhhccCchhhhhhhhc----cc------cc-----cccccccchhhhhhHHHHHhcC
Confidence 2335667888889999997766554321100001 01 11 0000011124555667777745
Q ss_pred CcEEEecCcCCHHHHHHHHHhCCC-EEEEehhhhccCchhHHHHHHHHH
Q psy16199 717 FPILGIGGIDSADVALQFIQAGAH-AVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~GA~-~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
.-|.+.||.++.+++.+++..|.. +|..+|.++.+ |+++.++..++.
T Consensus 319 t~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an-PDLp~rl~~~~~ 366 (400)
T KOG0134|consen 319 TVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN-PDLPKRLLNGLP 366 (400)
T ss_pred cEEEecCCccCHHHHHHHHhcCCceeEEecchhccC-CchhHHHHhCCC
Confidence 567777889999999999998866 99999999954 999999988765
No 242
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.18 E-value=3.3e-05 Score=86.16 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 716 NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
++||++.|||.|++++..++.+||++||+||.++.
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 49999999999999999999999999999999994
No 243
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.18 E-value=7.1e-05 Score=77.32 Aligned_cols=155 Identities=23% Similarity=0.377 Sum_probs=96.1
Q ss_pred HHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh--------------------
Q psy16199 584 KKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI-------------------- 643 (842)
Q Consensus 584 ~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~-------------------- 643 (842)
+.+.+.|.|+|-+ |++.+-..+.+.++++++|+ +++|+++= +.+.
T Consensus 26 ~~~~~~gtdai~v-------------GGS~~vt~~~~~~~v~~ik~-~~lPvilf-p~~~~~i~~~aDa~l~~svlNs~~ 90 (232)
T PRK04169 26 EAICESGTDAIIV-------------GGSDGVTEENVDELVKAIKE-YDLPVILF-PGNIEGISPGADAYLFPSVLNSRN 90 (232)
T ss_pred HHHHhcCCCEEEE-------------cCCCccchHHHHHHHHHHhc-CCCCEEEe-CCCccccCcCCCEEEEEEEecCCC
Confidence 5566779999998 44455667899999999999 89999973 2211
Q ss_pred -----hcHHHHHHHHHHCCCC----EEEEecCCCccccCCCCCCCCCc----c-----------cC-CCccccCCCCCCc
Q psy16199 644 -----TNITDIAKAAYEGKAD----GVSAINTVSGLMSLSADGNPWPA----V-----------GT-KKLTTYGGVSGNA 698 (842)
Q Consensus 644 -----~~~~~~a~~~~~~G~d----~i~v~nt~~~~~~~~~~~~~~p~----~-----------~~-~~~~~~gG~sG~~ 698 (842)
..-.+.+..+...|.. |-++.|.-.....+ ......|. + +. --...+|+ ..
T Consensus 91 ~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~-~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs---~~ 166 (232)
T PRK04169 91 PYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVV-GTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGG---GA 166 (232)
T ss_pred cchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeee-eccccCCCChHHHHHHHHHHHHHcCCCeEEEECCC---CC
Confidence 1122334444444543 33344432211110 00011110 0 00 00012222 22
Q ss_pred cccchHHHHHHHHhhCCCC-cEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCch-hHHHH
Q psy16199 699 TRPMGLKAVSSIAKMFPNF-PILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFT-VVDDY 759 (842)
Q Consensus 699 ~~p~al~~v~~i~~~~~~i-pIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~-~~~~i 759 (842)
-.|...+.++++++.+ ++ ||+..|||++.+++.+++.+|||.|.+||++.. +|. .++.+
T Consensus 167 g~~~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~-d~~~~~~~~ 227 (232)
T PRK04169 167 GDPVPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE-DPKKTVKAI 227 (232)
T ss_pred CCCCCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh-CHHHHHHHH
Confidence 2555688899999987 56 999999999999999999999999999999995 455 44433
No 244
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.17 E-value=1.4e-05 Score=88.43 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCC
Q psy16199 615 QDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGV 694 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~ 694 (842)
.+|+.+.++++++++. .++|.+++++ .+..++++.+.++|+|.|+++.|+.+. .+++-
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~--~~~~e~a~~l~eaGvd~I~vhgrt~~~-------------------~h~~~ 172 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAVSLSP--QRAQELAPTVVEAGVDLFVIQGTVVSA-------------------EHVSK 172 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEEecCC--cCHHHHHHHHHHCCCCEEEEeccchhh-------------------hccCC
Confidence 5689999999999996 5676666654 467899999999999999997654321 12211
Q ss_pred CCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehh
Q psy16199 695 SGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747 (842)
Q Consensus 695 sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta 747 (842)
.+. +..+.++.+.. ++|||+ |+|.|.+++.+++.+|||+|+++.+
T Consensus 173 ~~~------~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 173 EGE------PLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred cCC------HHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 111 23344455555 799999 8999999999999999999999854
No 245
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.17 E-value=1.1e-05 Score=100.76 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCC
Q psy16199 615 QDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG 693 (842)
.+++.+.+++..+|+.. +.||.||+... ..+..++.-+.++|+|.|++.+.-+++- .-|... --
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~-~~vg~ia~gvaka~aD~I~IdG~~GGTG-------Aap~~~-------~~ 1042 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSE-PGVGTIATGVAKAYADLITISGYDGGTG-------ASPLTS-------VK 1042 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccC-CCccHHHhChhhcCCCEEEEeCCCCCcc-------cccHHH-------Hh
Confidence 47788999999999987 57999999764 3445566667789999999977544321 011100 00
Q ss_pred CCCCccccchHHHHHH-HHhh-C-CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc--------------------
Q psy16199 694 VSGNATRPMGLKAVSS-IAKM-F-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN-------------------- 750 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~-i~~~-~-~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~-------------------- 750 (842)
+.|-|. ..++..+.+ +.+. + .++.|++.||+.|+.|+++++++||+.|.++|++|.
T Consensus 1043 ~~GlP~-e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGia 1121 (1485)
T PRK11750 1043 YAGSPW-ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVA 1121 (1485)
T ss_pred hCCccH-HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEe
Confidence 122221 122322222 2221 1 248999999999999999999999999999999881
Q ss_pred -cC---------------chhHHHHHHHHHHHHHhcCC-CccccCCCC
Q psy16199 751 -QD---------------FTVVDDYITGLQTLLYLKST-QLKGWDGQS 781 (842)
Q Consensus 751 -~g---------------p~~~~~i~~~l~~~m~~~g~-~i~~~~~~~ 781 (842)
++ ..++.-+.++|+.+|...|+ +++|+.|+.
T Consensus 1122 Tqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~elvGr~ 1169 (1485)
T PRK11750 1122 TQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDLIGRT 1169 (1485)
T ss_pred ccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcCch
Confidence 11 22344567899999999999 999998864
No 246
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.16 E-value=2.1e-05 Score=80.95 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=105.1
Q ss_pred EEeccCCCHhHHHHHHHHHhhcCcCEEEEec-cCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccE--EEEecCChh
Q psy16199 568 ASIMCTYNKDDWLELSKKTEKAGADALELNL-SCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPF--FVKLTPNIT 644 (842)
Q Consensus 568 ~si~~g~~~e~~~~~a~~~~~agaD~ielN~-scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv--~vKl~p~~~ 644 (842)
+||++ .+.+.+.+.++.+.++|+|.|++.+ .+|-.+ +.....+.++++++..+.|+ -++...
T Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-----------~~~~~~~~v~~i~~~~~~~v~v~lm~~~--- 67 (210)
T TIGR01163 3 PSILS-ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP-----------NLTFGPPVLEALRKYTDLPIDVHLMVEN--- 67 (210)
T ss_pred chhhc-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-----------CcccCHHHHHHHHhcCCCcEEEEeeeCC---
Confidence 46664 5788899999999999999999973 233211 11133466777776667775 355543
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccc----------cCC------CCCCCCCccc----CCC----ccccCCCCCCccc
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLM----------SLS------ADGNPWPAVG----TKK----LTTYGGVSGNATR 700 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~----------~~~------~~~~~~p~~~----~~~----~~~~gG~sG~~~~ 700 (842)
..++++.+.+.|+|+|+++....... ++. .++ ....+. ... .+...|.+|....
T Consensus 68 -~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t-~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 145 (210)
T TIGR01163 68 -PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPAT-PLEFLEYVLPDVDLVLLMSVNPGFGGQKFI 145 (210)
T ss_pred -HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHHHhhCCEEEEEEEcCCCCccccc
Confidence 45678888899999988875321100 001 110 000000 000 0112344665555
Q ss_pred cchHHHHHHHHhhCC----CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 701 PMGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 701 p~al~~v~~i~~~~~----~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
+..++.+.++++..+ ++||...||| +++++.+++..||+.+-++|+++.
T Consensus 146 ~~~~~~i~~i~~~~~~~~~~~~i~v~GGI-~~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 146 PDTLEKIREVRKMIDENGLSILIEVDGGV-NDDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHHcCCCEEEEChHHhC
Confidence 667777777776542 3789999999 579999999999999999999984
No 247
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.16 E-value=7.9e-05 Score=77.61 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=116.4
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEec
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLT 640 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~ 640 (842)
+.+||++ .+...+.+-++.++++|+|.|.+.+- +||.. + . -++++++++.+ ++|+-+|+-
T Consensus 9 i~pSi~~-~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~----~------G----~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 9 IAPSILA-ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLS----F------G----PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EehhHhh-cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcC----c------C----HHHHHHHHhcCCCCCEEEEEC
Confidence 5678875 57888899999999999999999863 45531 1 1 26778888877 899999998
Q ss_pred CChhcHHHHHHHHHHCCCCEEEEecCCCc---------------cccCCCCC-CCC---------CcccC-CCccccCCC
Q psy16199 641 PNITNITDIAKAAYEGKADGVSAINTVSG---------------LMSLSADG-NPW---------PAVGT-KKLTTYGGV 694 (842)
Q Consensus 641 p~~~~~~~~a~~~~~~G~d~i~v~nt~~~---------------~~~~~~~~-~~~---------p~~~~-~~~~~~gG~ 694 (842)
++ +....++.+.++|+|.|+++--... ..++.+.. ++. +.++. --.+...|.
T Consensus 74 ~~--~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 74 VS--NPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF 151 (228)
T ss_pred CC--CHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence 53 5566677777788887777632111 11111111 000 11110 012345667
Q ss_pred CCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 695 SGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 695 sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
+|..-.|..+.-++++++..++..|...||| +.+.+.++..+|||.+-+||++..
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~ 206 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFK 206 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhC
Confidence 7777777778888888887766889999999 678999999999999999999874
No 248
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.15 E-value=3.8e-05 Score=78.59 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=58.8
Q ss_pred HHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCH
Q psy16199 649 IAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSA 728 (842)
Q Consensus 649 ~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~ 728 (842)
-++.+.+.|+|.|.+...+.+. ...++ .+..++.++++++.+ ++||++.||| ++
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~-------------------~k~~~-----~~~g~~~l~~~~~~~-~ipvia~GGI-~~ 160 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTD-------------------CKKGV-----PARGLEELSDIARAL-SIPVIAIGGI-TP 160 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCC-------------------CCCCC-----CCCCHHHHHHHHHhC-CCCEEEEcCC-CH
Confidence 3677889999999774432210 01111 233478888888887 6999999999 99
Q ss_pred HHHHHHHHhCCCEEEEehhhhcc
Q psy16199 729 DVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 729 ~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
+++.+++.+||++|.++++++..
T Consensus 161 ~~~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 161 ENTRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHcCCCEEEEEHHHhcC
Confidence 99999999999999999999953
No 249
>KOG2550|consensus
Probab=98.15 E-value=0.00025 Score=76.40 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=92.7
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCChhcHHHHHHHH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPNITNITDIAKAA 653 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~ 653 (842)
+.|+=++..+.+.++|+|.|-|.-|-= +...-.+.+++|++.. ++.|+. .|+- ..+.|+-|
T Consensus 248 Tre~dK~rl~ll~~aGvdvviLDSSqG--------------nS~~qiemik~iK~~yP~l~Via---GNVV-T~~qa~nL 309 (503)
T KOG2550|consen 248 TRDDDKERLDLLVQAGVDVVILDSSQG--------------NSIYQLEMIKYIKETYPDLQIIA---GNVV-TKEQAANL 309 (503)
T ss_pred cccchhHHHHHhhhcCCcEEEEecCCC--------------cchhHHHHHHHHHhhCCCceeec---ccee-eHHHHHHH
Confidence 344445555666778999999975321 2345568999999875 344432 3322 34678889
Q ss_pred HHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHH
Q psy16199 654 YEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQ 733 (842)
Q Consensus 654 ~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~ 733 (842)
..+|||++-+.=..++ +=+. ...-..|.-.| .|..-+.+.+..+ ++|||+.|||++.-++.+
T Consensus 310 I~aGaDgLrVGMGsGS---iCiT---------qevma~GrpQ~-----TAVy~va~~A~q~-gvpviADGGiq~~Ghi~K 371 (503)
T KOG2550|consen 310 IAAGADGLRVGMGSGS---ICIT---------QKVMACGRPQG-----TAVYKVAEFANQF-GVPCIADGGIQNVGHVVK 371 (503)
T ss_pred HHccCceeEeccccCc---eeee---------ceeeeccCCcc-----cchhhHHHHHHhc-CCceeecCCcCccchhHh
Confidence 9999999988322111 1010 00111222223 3455667777887 799999999999999999
Q ss_pred HHHhCCCEEEEehhhh
Q psy16199 734 FIQAGAHAVQICSAVQ 749 (842)
Q Consensus 734 ~l~~GA~~Vqv~ta~l 749 (842)
+|.+||+.||+|+-+-
T Consensus 372 Al~lGAstVMmG~lLA 387 (503)
T KOG2550|consen 372 ALGLGASTVMMGGLLA 387 (503)
T ss_pred hhhcCchhheecceee
Confidence 9999999999998665
No 250
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.14 E-value=6.8e-05 Score=81.79 Aligned_cols=174 Identities=15% Similarity=0.235 Sum_probs=109.4
Q ss_pred ccccCCcccccCC-CCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccch
Q psy16199 463 KKLNSDGVSLQNG-LPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGY 538 (842)
Q Consensus 463 ~~~~~~~~g~~~g-~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~ 538 (842)
+..+.|||++|+| +++. .+.+..+.+. +|+ .++|+|+.|+.|||+ |++|.. ..++|+ +|++|.|.
T Consensus 7 g~~l~npi~~aag~~~~~-----~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~--~~~~n~----~gl~~~g~ 75 (300)
T TIGR01037 7 GIRFKNPLILASGIMGSG-----VESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETP--CGMLNA----IGLQNPGV 75 (300)
T ss_pred CEECCCCCEeCCcCCCCC-----HHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecc--cHHhhh----ccCCCcCH
Confidence 4568899999998 7988 8888888776 344 999999999999999 888875 568888 77775443
Q ss_pred hhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHH
Q psy16199 539 QAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPE 618 (842)
Q Consensus 539 dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~ 618 (842)
+. |.+..+....
T Consensus 76 ~~--------------------------------------~~~~~~~~~~------------------------------ 87 (300)
T TIGR01037 76 EA--------------------------------------FLEELKPVRE------------------------------ 87 (300)
T ss_pred HH--------------------------------------HHHHHHHHhc------------------------------
Confidence 32 3222221110
Q ss_pred HHHHHHHHHHhhCCccEEEEe-cCChhcHHHHHHHHHHCC--CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCC
Q psy16199 619 MVRNISLWVRSSVKIPFFVKL-TPNITNITDIAKAAYEGK--ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVS 695 (842)
Q Consensus 619 ~~~~ii~~v~~~~~~Pv~vKl-~p~~~~~~~~a~~~~~~G--~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~s 695 (842)
..+.|+++=+ ..+.+++.+.++.+++++ +|+|.+ | ++. |.. ...|..-
T Consensus 88 -----------~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~iel-N-~~c-----------P~~-----~~~g~~l 138 (300)
T TIGR01037 88 -----------EFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYEL-N-LSC-----------PHV-----KGGGIAI 138 (300)
T ss_pred -----------cCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEE-E-CCC-----------CCC-----CCCcccc
Confidence 1123555555 223456677788887763 898887 4 221 111 1122111
Q ss_pred CCccccchHHHHHHHHhhCCCCcEEEecC--cCCHHHHHHHH-HhCCCEEEEeh
Q psy16199 696 GNATRPMGLKAVSSIAKMFPNFPILGIGG--IDSADVALQFI-QAGAHAVQICS 746 (842)
Q Consensus 696 G~~~~p~al~~v~~i~~~~~~ipIi~~GG--I~t~~da~~~l-~~GA~~Vqv~t 746 (842)
+. ......+.++++++.+ ++||+.=-. +.+..+..+.+ ++|+|++.+..
T Consensus 139 ~~-~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 139 GQ-DPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred cc-CHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 11 1235678888888887 688776543 33344445544 48999998753
No 251
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.14 E-value=3.2e-05 Score=86.80 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 716 NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
.+||++.|||.|++++..++++||++||+||.++.
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla 258 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC 258 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence 48999999999999999999999999999999994
No 252
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.10 E-value=2.4e-05 Score=79.27 Aligned_cols=145 Identities=24% Similarity=0.321 Sum_probs=95.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCC-------C-CCC--cccCCCCHHHHH------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMG-------E-RGM--GLACGQDPEMVR------------ 621 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~-------~-~~~--G~~~~~~~~~~~------------ 621 (842)
.|+++=+. +.++++..+.++.+.++|++.||+.+..|+... . .+. |...-.+.+.+.
T Consensus 4 ~~~~~i~r-~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 4 QPLVAVLR-GDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred CcEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 45666664 678999999999999999999999876552110 0 000 111112222222
Q ss_pred -----HHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC
Q psy16199 622 -----NISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696 (842)
Q Consensus 622 -----~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG 696 (842)
+++++.++ .+.|+++ ......+ +..+.+.|+|.|-+...
T Consensus 83 p~~~~~~~~~~~~-~~~~~i~----gv~t~~e-~~~A~~~Gad~i~~~p~------------------------------ 126 (190)
T cd00452 83 PGLDPEVVKAANR-AGIPLLP----GVATPTE-IMQALELGADIVKLFPA------------------------------ 126 (190)
T ss_pred CCCCHHHHHHHHH-cCCcEEC----CcCCHHH-HHHHHHCCCCEEEEcCC------------------------------
Confidence 22222222 2344433 3334444 45556789998887211
Q ss_pred CccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 697 NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
.+...++++.+++.++++|+++.||| +++++.+++.+||++|.+++++.
T Consensus 127 ---~~~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 127 ---EAVGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred ---cccCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 11136778888888877999999999 99999999999999999999987
No 253
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.10 E-value=0.00011 Score=75.25 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=52.9
Q ss_pred CCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHH
Q psy16199 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYI 760 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~ 760 (842)
+||.. ...++++++++.+.++||+..|||+|.+++.+++.+|||.|.+||++.. .|.++.++.
T Consensus 156 ~SG~~---~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~-~p~~~~~~v 218 (219)
T cd02812 156 YSGAY---GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE-DPNAALETV 218 (219)
T ss_pred CCCCc---CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC-CHHHHHHHh
Confidence 35544 4578888998886469999999999999999999999999999999994 588777654
No 254
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.09 E-value=0.00022 Score=74.54 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=96.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.++-+-++. .+++++.+.+. ++|||+|-+|+. +. .+...+.++.+++. ++-+.+=+.|+
T Consensus 66 ~~~~vhlmv-~~p~d~~~~~~---~~gad~v~vH~~q~~---------------~d~~~~~~~~i~~~-g~~iGls~~~~ 125 (229)
T PLN02334 66 APLDCHLMV-TNPEDYVPDFA---KAGASIFTFHIEQAS---------------TIHLHRLIQQIKSA-GMKAGVVLNPG 125 (229)
T ss_pred CcEEEEecc-CCHHHHHHHHH---HcCCCEEEEeecccc---------------chhHHHHHHHHHHC-CCeEEEEECCC
Confidence 566666764 47888877763 359999999875 11 12334566666653 33344445442
Q ss_pred hhcHHHHHHHHHHCC-CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 643 ITNITDIAKAAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G-~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
...+.++.+.+.| +|.|.+.. .+.|.+|....|..++.++++++..+++||.+
T Consensus 126 --t~~~~~~~~~~~~~~Dyi~~~~------------------------v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a 179 (229)
T PLN02334 126 --TPVEAVEPVVEKGLVDMVLVMS------------------------VEPGFGGQSFIPSMMDKVRALRKKYPELDIEV 179 (229)
T ss_pred --CCHHHHHHHHhccCCCEEEEEE------------------------EecCCCccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 2344555555664 99987721 12334444445677888999988765789999
Q ss_pred ecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 722 IGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 722 ~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
.||| +.+++.+.+.+||+.|-++|+++.
T Consensus 180 ~GGI-~~e~i~~l~~aGad~vvvgsai~~ 207 (229)
T PLN02334 180 DGGV-GPSTIDKAAEAGANVIVAGSAVFG 207 (229)
T ss_pred eCCC-CHHHHHHHHHcCCCEEEEChHHhC
Confidence 9999 899999999999999999999884
No 255
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.07 E-value=0.00011 Score=74.45 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=105.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~ 642 (842)
.++++=+. +.++++..+.++.+.+.|.+.||+.+..|+. .+.++.+++.. ++.|.+= +
T Consensus 8 ~~liaVlr-~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a-----------------~~~i~~l~~~~~~~~vGAG---T 66 (204)
T TIGR01182 8 AKIVPVIR-IDDVDDALPLAKALIEGGLRVLEVTLRTPVA-----------------LDAIRLLRKEVPDALIGAG---T 66 (204)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEeCCCccH-----------------HHHHHHHHHHCCCCEEEEE---e
Confidence 56666665 5789999999999999999999999866642 35566666554 2333332 2
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccC-CCccc-----cCCCCCCccccch----HHHHHHHHh
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT-KKLTT-----YGGVSGNATRPMG----LKAVSSIAK 712 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~-~~~~~-----~gG~sG~~~~p~a----l~~v~~i~~ 712 (842)
+.+ .+-++.+.++|+++|+--+........-. ....|.+.+ ...++ .-|.+-=.++|.. ..+++.++.
T Consensus 67 Vl~-~~~a~~a~~aGA~FivsP~~~~~v~~~~~-~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~ 144 (204)
T TIGR01182 67 VLN-PEQLRQAVDAGAQFIVSPGLTPELAKHAQ-DHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAG 144 (204)
T ss_pred CCC-HHHHHHHHHcCCCEEECCCCCHHHHHHHH-HcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhc
Confidence 333 34478888999999865333211100000 011222210 00000 0111222234532 678899999
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
-+|++|++.+||| +.+++.+++++|+.+|.+||.+..
T Consensus 145 plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 145 PFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred cCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcC
Confidence 8889999999999 679999999999999999999984
No 256
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.05 E-value=7.7e-05 Score=76.26 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=105.1
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.++++-+- +.+.++..++++.+.+.|+..||+-+..|+. .+.++.+++....++.|=. .++
T Consensus 10 ~~~~~v~r-~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~-----------------~~~i~~l~~~~~~~~~iGa-GTV 70 (206)
T PRK09140 10 LPLIAILR-GITPDEALAHVGALIEAGFRAIEIPLNSPDP-----------------FDSIAALVKALGDRALIGA-GTV 70 (206)
T ss_pred CCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCCccH-----------------HHHHHHHHHHcCCCcEEeE-Eec
Confidence 56666664 5789999999999999999999997755531 2356666666544433322 112
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcc-cCCCccc------cCC-CCC-CccccchHHHHHHHHhhC
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAV-GTKKLTT------YGG-VSG-NATRPMGLKAVSSIAKMF 714 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~-~~~~~~~------~gG-~sG-~~~~p~al~~v~~i~~~~ 714 (842)
.+ .+-++.+.++|+++++.-+........... ...+.+ +-+..+. .|- |-+ -+..+..++.++.+++.+
T Consensus 71 ~~-~~~~~~a~~aGA~fivsp~~~~~v~~~~~~-~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 71 LS-PEQVDRLADAGGRLIVTPNTDPEVIRRAVA-LGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CC-HHHHHHHHHcCCCEEECCCCCHHHHHHHHH-CCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 22 345788999999999885542111000000 011110 0011110 010 000 001235688899998888
Q ss_pred C-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 715 P-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 715 ~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
+ ++|+++.||| +.+++.+++++||++|.++|+++..
T Consensus 149 ~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 149 PPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred CCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 5 6999999999 8999999999999999999999853
No 257
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.05 E-value=0.00015 Score=75.00 Aligned_cols=178 Identities=21% Similarity=0.221 Sum_probs=112.0
Q ss_pred EEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhh-CCccEEEEecC
Q psy16199 567 IASIMCTYNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSS-VKIPFFVKLTP 641 (842)
Q Consensus 567 i~si~~g~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~-~~~Pv~vKl~p 641 (842)
..||.+ .+...+.+-+++++++|+|.+.+.+- .||.. + . -++++++|+. +++|+=|=+.-
T Consensus 3 ~pSil~-ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t----f------g----~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 3 APSILS-ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLT----F------G----APICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred chhhhh-cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccc----c------C----HHHHHHHHHhCCCCCEEEEecc
Confidence 456764 47788888888999899999999763 46521 1 1 2567778776 57776655532
Q ss_pred ChhcHHHHHHHHHHCCCCEEEE-------------------------ecCCCccccCCCCCCCCCccc-CCCccccCCCC
Q psy16199 642 NITNITDIAKAAYEGKADGVSA-------------------------INTVSGLMSLSADGNPWPAVG-TKKLTTYGGVS 695 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v-------------------------~nt~~~~~~~~~~~~~~p~~~-~~~~~~~gG~s 695 (842)
.+...+.+.+.++|+|-|++ .|.-.+...+. .-.+.++ .--.+..+|.+
T Consensus 68 --~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~---~~l~~~D~vlvMtV~PGfg 142 (220)
T PRK08883 68 --KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE---YIMDKVDLILLMSVNPGFG 142 (220)
T ss_pred --CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH---HHHHhCCeEEEEEecCCCC
Confidence 23344444444555554444 44211110000 0000111 00124567788
Q ss_pred CCccccchHHHHHHHHhhCC----CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 696 GNATRPMGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 696 G~~~~p~al~~v~~i~~~~~----~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
|..-.|..++.++++++..+ ++||.+.|||. .+.+.+...+||+.+-+||+++.. .. +.+..+.++..+
T Consensus 143 Gq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~-~d-~~~~i~~l~~~~ 215 (220)
T PRK08883 143 GQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ-PD-YKAVIDEMRAEL 215 (220)
T ss_pred CceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC-CC-HHHHHHHHHHHH
Confidence 88888999999999987753 38999999996 999999999999999999998843 33 334444444433
No 258
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.04 E-value=0.00011 Score=77.94 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=103.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc---------ccC----------------------------CH-H
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRA----------------------------VP-E 190 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~---------~~~----------------------------~~-~ 190 (842)
.|+|||||++|+-+|..|++.|.+ |.++++..... ++. .. +
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~-V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e 101 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLK-VCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE 101 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence 399999999999999999999975 99999875210 000 00 0
Q ss_pred ----HHHHHHhcCcEEecCCCceEEEccCC--cEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHh
Q psy16199 191 ----EVQLAWEEKCEFLPFMSPVQVDVKDN--KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLE 264 (842)
Q Consensus 191 ----~~~~~~~~gV~i~~~~~v~~v~~~~~--~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~ 264 (842)
..+.+.+.|++++.++.++++...++ ++.+|.+.....+.+|. ..+..++.++.||.|+|...+...++.
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~----~~d~~~i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL----HVDPLTQRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC----CCCCEEEEcCEEEEeecCCchHHHHHH
Confidence 11234467999999999998875555 58888775322111111 113468999999999997634444443
Q ss_pred hcCCcccCCC---C----------CeeeCCCCCCCCCCCeEEeccCCC----Cc---hhHHHHHHHHHHHHHHHHHHH
Q psy16199 265 AIKPVKLDKY---G----------YPEVNYTTMATSVPGVFCGGDTAN----LS---DTTVESVNDGKTAAWHIHKYI 322 (842)
Q Consensus 265 ~l~gl~~~~~---G----------~i~vd~~~~~Ts~~gVfa~GD~~~----~~---~~~~~A~~~G~~aA~~I~~~L 322 (842)
.-.++..... | ...|+ .|.+ -+||+|++|=.+. .| +..-.=.-+|++||..|.+.|
T Consensus 178 ~~~~~~~~~~~~~g~~~~~~~~~e~~~~~-~t~~-~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 178 KKIVLEDQVPKLGGEKSMWAEVAEVAIHE-NTRE-VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred HHcCcccCCcccCCchhhhhhhhHHHHHh-ccCc-ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 3212322210 0 01122 2222 4899999996642 12 222233568999999987765
No 259
>KOG1606|consensus
Probab=98.03 E-value=4.9e-05 Score=74.39 Aligned_cols=161 Identities=19% Similarity=0.280 Sum_probs=94.6
Q ss_pred HHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEE
Q psy16199 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGV 661 (842)
Q Consensus 582 ~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i 661 (842)
-++.++++||=++-.-=..|..++..| |-+=+.||..+. .+++++.+||..|..- .++.+ |+.++..|+|.|
T Consensus 33 QA~iAE~aGACaVmalervPadiR~~G-gV~RMsDP~mIK----ei~~aVsiPVMAk~Ri--GHFVE-AQIlE~l~vDYi 104 (296)
T KOG1606|consen 33 QARIAEEAGACAVMALERVPADIRAQG-GVARMSDPRMIK----EIKNAVSIPVMAKVRI--GHFVE-AQILEALGVDYI 104 (296)
T ss_pred HHHHHHhcCcceEeeeccCCHhHHhcC-CeeecCCHHHHH----HHHHhccchhhhhhhh--hhhhH-HHHHHHhccCcc
Confidence 466677788776665556675554444 445567887655 5566778999999874 34444 789999999998
Q ss_pred EEecCCCccc---cCCCCCCCCCcccCCC-------c-------cccCCCCCCccccch---------------------
Q psy16199 662 SAINTVSGLM---SLSADGNPWPAVGTKK-------L-------TTYGGVSGNATRPMG--------------------- 703 (842)
Q Consensus 662 ~v~nt~~~~~---~~~~~~~~~p~~~~~~-------~-------~~~gG~sG~~~~p~a--------------------- 703 (842)
.=+--+.... .+.-.+-+.|.+-+-. | -+..|-.|...-..+
T Consensus 105 DESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~de 184 (296)
T KOG1606|consen 105 DESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDE 184 (296)
T ss_pred chhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 7654332211 1111122333321100 0 000010111110111
Q ss_pred -----------HHHHHHHHhhCCCCcE--EEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 704 -----------LKAVSSIAKMFPNFPI--LGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 704 -----------l~~v~~i~~~~~~ipI--i~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
++++.+.++. +++|+ ++.|||.|+.|+.-++.+|+|+|-+|++++..
T Consensus 185 v~t~Ak~i~aP~dLv~~t~q~-GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks 244 (296)
T KOG1606|consen 185 VFTFAKEIAAPYDLVKQTKQL-GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKS 244 (296)
T ss_pred HHHHHHHhcCcHHHHHHHHHc-CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccC
Confidence 2222222222 25775 68999999999999999999999999999843
No 260
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=98.02 E-value=0.00019 Score=72.38 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEec------CCh-------
Q psy16199 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT------PNI------- 643 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~------p~~------- 643 (842)
+...+.++.+.++|.|+|.+ |++.+-+.+.+.+.++++|+..++|+++=-+ +..
T Consensus 28 ~~~~ei~~~~~~~GTDaImI-------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~s 94 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMI-------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPS 94 (240)
T ss_pred cccHHHHHHHHHcCCCEEEE-------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEE
Confidence 56777888888899999999 4455677889999999999999999987532 111
Q ss_pred ----h-------cHHHHHHHHHHCC----CCEEEEecCCCc---ccc---CCCCC-------------CCCCcccCCCcc
Q psy16199 644 ----T-------NITDIAKAAYEGK----ADGVSAINTVSG---LMS---LSADG-------------NPWPAVGTKKLT 689 (842)
Q Consensus 644 ----~-------~~~~~a~~~~~~G----~d~i~v~nt~~~---~~~---~~~~~-------------~~~p~~~~~~~~ 689 (842)
. .-.+-++.+.+.+ .-+-++.|--.. ... ++.+. -+.|.+ .-
T Consensus 95 vLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~----Yl 170 (240)
T COG1646 95 VLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVV----YL 170 (240)
T ss_pred EecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEE----EE
Confidence 0 1122233333333 223344442110 000 11110 000110 01
Q ss_pred ccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 690 TYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 690 ~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
++||-.| .|...+.++++.+. .++|..|||+|++.|.++..+|||.+.+|+.+. +.+.-+.++.+.++
T Consensus 171 Eagsga~---~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie-e~~~~~~~~v~~~k 238 (240)
T COG1646 171 EAGSGAG---DPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE-EDPDKALETVEAIK 238 (240)
T ss_pred EecCCCC---CCcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEECceee-cCHHHHHHHHHHhh
Confidence 2233333 45556666555443 589999999999999999999999999999988 55766666655543
No 261
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.02 E-value=0.00058 Score=69.16 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=93.4
Q ss_pred ceEEEeccCCCHhHHHHHHHHHhhc-CcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 565 ILIASIMCTYNKDDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 565 pvi~si~~g~~~e~~~~~a~~~~~a-gaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.+..+-.+-.+.+|....++++.++ +-|.|-|-+--.. ..+.-|+-.+.+..+.+.+. +.-|+.=+++|
T Consensus 64 ~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~--------~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~~D- 133 (247)
T PF05690_consen 64 TLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDD--------KTLLPDPIETLKAAEILVKE-GFVVLPYCTDD- 133 (247)
T ss_dssp EEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-T--------TT--B-HHHHHHHHHHHHHT-T-EEEEEE-S--
T ss_pred EECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC--------CCcCCChhHHHHHHHHHHHC-CCEEeecCCCC-
Confidence 4566665557899999999999886 5789888653221 11335677777777776654 55666666665
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.-+|+.|++.|+..|---..-.+ ||..+. ....++.+.++. ++|||.-+
T Consensus 134 ---~v~akrL~d~GcaavMPlgsPIG-------------------------Sg~Gi~--n~~~l~~i~~~~-~vPvIvDA 182 (247)
T PF05690_consen 134 ---PVLAKRLEDAGCAAVMPLGSPIG-------------------------SGRGIQ--NPYNLRIIIERA-DVPVIVDA 182 (247)
T ss_dssp ---HHHHHHHHHTT-SEBEEBSSSTT-------------------------T---SS--THHHHHHHHHHG-SSSBEEES
T ss_pred ---HHHHHHHHHCCCCEEEecccccc-------------------------cCcCCC--CHHHHHHHHHhc-CCcEEEeC
Confidence 46799999999998876332111 122121 145677777787 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
||.++.|+.+++++|||+|.+-|++...
T Consensus 183 GiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 183 GIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp ---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred CCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 9999999999999999999999999843
No 262
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.00 E-value=0.00063 Score=69.83 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=101.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-cc-EEEEecC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK-IP-FFVKLTP 641 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~P-v~vKl~p 641 (842)
.++++=+. +.+.++...+++.+.+.|...+|+-+..|+. .+.++.+++... .| +.|=. .
T Consensus 13 ~~vi~vir-~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a-----------------~~~i~~l~~~~~~~p~~~vGa-G 73 (213)
T PRK06552 13 NGVVAVVR-GESKEEALKISLAVIKGGIKAIEVTYTNPFA-----------------SEVIKELVELYKDDPEVLIGA-G 73 (213)
T ss_pred CCEEEEEE-CCCHHHHHHHHHHHHHCCCCEEEEECCCccH-----------------HHHHHHHHHHcCCCCCeEEee-e
Confidence 56666665 5789999999999999999999999877642 255566665442 12 22211 1
Q ss_pred ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCC-Ccc-----ccCCCCCCccc---cchHHHHHHHHh
Q psy16199 642 NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTK-KLT-----TYGGVSGNATR---PMGLKAVSSIAK 712 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~-~~~-----~~gG~sG~~~~---p~al~~v~~i~~ 712 (842)
++.+ .+-++.+.++|+++|+.=+........-. ....|.+.+- ..+ ..-|.+-=.++ +....+++.++.
T Consensus 74 TV~~-~~~~~~a~~aGA~FivsP~~~~~v~~~~~-~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~ 151 (213)
T PRK06552 74 TVLD-AVTARLAILAGAQFIVSPSFNRETAKICN-LYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKG 151 (213)
T ss_pred eCCC-HHHHHHHHHcCCCEEECCCCCHHHHHHHH-HcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhh
Confidence 2223 23467777888887775332211100000 0112222100 000 00111111111 234788899999
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
.++++|++++||| +.+++.+++.+||++|.+++.++.
T Consensus 152 ~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 152 PLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred hCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhC
Confidence 8888999999999 689999999999999999999973
No 263
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.00 E-value=3.4e-05 Score=77.21 Aligned_cols=93 Identities=27% Similarity=0.329 Sum_probs=77.4
Q ss_pred ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 642 NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
+..|+.++|+...+.|+|-++. +||..+ .. | +.+.+++|++.++.+ .+|+..
T Consensus 28 d~GDpVelA~~Y~e~GADElvF---------lDItAs-----------~~----g---r~~~~~vv~r~A~~v-fiPltV 79 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVF---------LDITAS-----------SE----G---RETMLDVVERVAEQV-FIPLTV 79 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEE---------Eecccc-----------cc----c---chhHHHHHHHHHhhc-eeeeEe
Confidence 3558999999999999999887 333311 11 1 455699999999998 799999
Q ss_pred ecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 722 IGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 722 ~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
.|||.|.+|+.+.|.+|||=|.|-|+.+. .|.++.++.+..
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSINsaAv~-~p~lI~~~a~~F 120 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSINSAAVK-DPELITEAADRF 120 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeChhHhc-ChHHHHHHHHHh
Confidence 99999999999999999999999999995 599988886654
No 264
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=0.00013 Score=76.31 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=87.0
Q ss_pred hhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC------Ch-----hcHHHHHHHHHH
Q psy16199 587 EKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP------NI-----TNITDIAKAAYE 655 (842)
Q Consensus 587 ~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p------~~-----~~~~~~a~~~~~ 655 (842)
.++||+.+-+|... ..+|+.++++.+..-+. +=+.+-... .+ .++.++++.+.+
T Consensus 95 l~~Ga~kvvigt~a-------------~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~ 159 (234)
T PRK13587 95 FAAGINYCIVGTKG-------------IQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD 159 (234)
T ss_pred HHCCCCEEEECchH-------------hcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH
Confidence 34699999886322 26788888887766321 111111111 11 256899999999
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHH
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFI 735 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l 735 (842)
.|+..|++++-- .-|-++|+. ++++.++.+.. ++||+++|||.|.+|+.+.+
T Consensus 160 ~g~~~ii~tdi~----------------------~dGt~~G~~-----~~li~~l~~~~-~ipvi~~GGi~s~edi~~l~ 211 (234)
T PRK13587 160 IPLGGIIYTDIA----------------------KDGKMSGPN-----FELTGQLVKAT-TIPVIASGGIRHQQDIQRLA 211 (234)
T ss_pred cCCCEEEEeccc----------------------CcCCCCccC-----HHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHH
Confidence 999999985421 123344543 77888888876 79999999999999999999
Q ss_pred HhCCCEEEEehhhhc
Q psy16199 736 QAGAHAVQICSAVQN 750 (842)
Q Consensus 736 ~~GA~~Vqv~ta~l~ 750 (842)
.+|+++|-+||++..
T Consensus 212 ~~G~~~vivG~a~~~ 226 (234)
T PRK13587 212 SLNVHAAIIGKAAHQ 226 (234)
T ss_pred HcCCCEEEEhHHHHh
Confidence 999999999999984
No 265
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.98 E-value=0.00048 Score=70.54 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=96.5
Q ss_pred CCCHhHHHHHHHHHhhcC-------cCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh
Q psy16199 573 TYNKDDWLELSKKTEKAG-------ADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT 644 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~ag-------aD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~ 644 (842)
-++.+|....++++.+++ -|.|-|-+- -|.+ +.-|+..+.+..+.+.+. +.-|+.=+++|
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~---------LlPD~~etl~Aae~Lv~e-GF~VlPY~~~D-- 147 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKY---------LLPDPIGTLKAAEFLVKK-GFTVLPYINAD-- 147 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcc---------cCCChHHHHHHHHHHHHC-CCEEeecCCCC--
Confidence 368999999998888764 678777652 2321 345666666666666644 45555555555
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
.-+|+.|++.|+..|---..-. | ||.-+. ....++.|.+.. ++||+..+|
T Consensus 148 --~v~a~rLed~Gc~aVMPlgsPI-----------------------G--Sg~Gl~--n~~~l~~i~e~~-~vpVivdAG 197 (267)
T CHL00162 148 --PMLAKHLEDIGCATVMPLGSPI-----------------------G--SGQGLQ--NLLNLQIIIENA-KIPVIIDAG 197 (267)
T ss_pred --HHHHHHHHHcCCeEEeeccCcc-----------------------c--CCCCCC--CHHHHHHHHHcC-CCcEEEeCC
Confidence 4679999999999886522211 0 111111 144566666765 799999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
|.+++|+.+++++|||+|.+.|++...
T Consensus 198 Igt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 198 IGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred cCCHHHHHHHHHcCCCEEeecceeecC
Confidence 999999999999999999999999954
No 266
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.97 E-value=6.5e-06 Score=90.63 Aligned_cols=70 Identities=29% Similarity=0.346 Sum_probs=61.3
Q ss_pred ccccCCcccccCCCCCCCCCChhHHHHhhhhh-hCc-cccccccCccCCCcc-eeEeeccCCccccCCccccCCCccchh
Q psy16199 463 KKLNSDGVSLQNGLPKRQINTPVETILSVKDV-IGQ-AVQRVTNYTELDNKK-QVVALINDDMCINCGKCYMACNDSGYQ 539 (842)
Q Consensus 463 ~~~~~~~~g~~~g~dk~~~~~~~~~~~~l~~~-~G~-~~g~vt~~~~~~n~~-~~~~~~~~~~~in~~~c~~Gfn~~G~d 539 (842)
+..+.|||++|+|+|++ ++.+..+.+. +|| +++|||+.||.|||+ |+++++++..++|+ +|++|.|.+
T Consensus 45 Gl~l~nPi~~AsG~~~~-----~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~----~g~~n~g~~ 115 (327)
T cd04738 45 GLTFPNPVGLAAGFDKN-----AEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR----MGFNNDGAD 115 (327)
T ss_pred CEECCCCCEeCcCCCCC-----HHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeec----CCCCCccHH
Confidence 57799999999999999 8888888866 455 999999999999998 89999988999999 999987755
Q ss_pred hh
Q psy16199 540 AI 541 (842)
Q Consensus 540 ai 541 (842)
..
T Consensus 116 ~~ 117 (327)
T cd04738 116 AV 117 (327)
T ss_pred HH
Confidence 43
No 267
>KOG1436|consensus
Probab=97.96 E-value=0.00014 Score=75.71 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=61.2
Q ss_pred ccceeeecccccCCCcccccCCCCCcHHHHHHhhhcCCceEEEEeeccCCCcccccCcceecccccccccCCCCcceeee
Q psy16199 346 VDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNI 425 (842)
Q Consensus 346 ~~L~~~~~G~~~~nP~~~As~p~~~~~~~~~~a~~~G~g~vv~kt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~n~ 425 (842)
..|.++++|.+|.||+++|++-. .+++++......|+|++.++|+++.|.+ +||+||+.+.. +..+.+|-
T Consensus 82 ~~L~~k~~g~~f~NPiglAAGfd-k~~eaidgL~~~gfG~ieigSvTp~pqe-GNPkPRvfrl~--------ed~~vINr 151 (398)
T KOG1436|consen 82 ASLETKVLGRKFSNPIGLAAGFD-KNAEAIDGLANSGFGFIEIGSVTPKPQE-GNPKPRVFRLP--------EDLAVINR 151 (398)
T ss_pred cchhhHHhhhhccCchhhhhccC-cchHHHHHHHhCCCceEEecccccCCCC-CCCCCceEecc--------cccchhhc
Confidence 46778899999999999998855 9999999999999999999999998887 99999998863 35667777
No 268
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.96 E-value=0.00014 Score=74.32 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEe-cCChh--cHHHHHHHHH
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKL-TPNIT--NITDIAKAAY 654 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl-~p~~~--~~~~~a~~~~ 654 (842)
..+. +.+.+.|||.|++-++-- .-...+.+.+.+-++++++.. ++|+-|=+ ++.++ ++...++.+.
T Consensus 73 ~~E~-~~Av~~GAdEiDvv~n~g---------~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~ 142 (211)
T TIGR00126 73 LYET-KEAIKYGADEVDMVINIG---------ALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICI 142 (211)
T ss_pred HHHH-HHHHHcCCCEEEeecchH---------hhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3443 444556999999976322 112256778888888888776 45544411 23233 5678888999
Q ss_pred HCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHHH
Q psy16199 655 EGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVALQ 733 (842)
Q Consensus 655 ~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~~ 733 (842)
++|+|+|-.+. | +++. ..+..-++.+++..+ +++|-++|||+|.+++.+
T Consensus 143 eaGADfvKTsT--------------------------G-f~~~---gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~ 192 (211)
T TIGR00126 143 DAGADFVKTST--------------------------G-FGAG---GATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIA 192 (211)
T ss_pred HhCCCEEEeCC--------------------------C-CCCC---CCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH
Confidence 99999997731 1 1111 122444555555543 599999999999999999
Q ss_pred HHHhCCCEEEEeh
Q psy16199 734 FIQAGAHAVQICS 746 (842)
Q Consensus 734 ~l~~GA~~Vqv~t 746 (842)
++.+||+-+...+
T Consensus 193 ~i~aGa~riGts~ 205 (211)
T TIGR00126 193 MIEAGASRIGASA 205 (211)
T ss_pred HHHHhhHHhCcch
Confidence 9999999775543
No 269
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.95 E-value=0.00013 Score=75.17 Aligned_cols=171 Identities=20% Similarity=0.236 Sum_probs=102.4
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT 644 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~ 644 (842)
+.+||.+ .+..++.+.++.+.++|+|+|++.+- .+.. .....-.++++.+++.++.|+.+.+.-+
T Consensus 2 ~~~~~~~-~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~v~l~~~-- 67 (211)
T cd00429 2 IAPSILS-ADFANLGEELKRLEEAGADWIHIDVMDGHFV-----------PNLTFGPPVVKALRKHTDLPLDVHLMVE-- 67 (211)
T ss_pred ceeeeec-CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-----------CccccCHHHHHHHHhhCCCcEEEEeeeC--
Confidence 3455543 47888899999999999999999531 1100 0011112456666665556665444332
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccc--------------cCCCCC-CCCCccc----CCCc----cccCCCCCCcccc
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLM--------------SLSADG-NPWPAVG----TKKL----TTYGGVSGNATRP 701 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~--------------~~~~~~-~~~p~~~----~~~~----~~~gG~sG~~~~p 701 (842)
+..+.++.+.++|+|+|+++....... ++.+.. +....+. .... ....|.+|....+
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 147 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIP 147 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCH
Confidence 345567888899999988764321100 011100 0000000 0000 1123445554445
Q ss_pred chHHHHHHHHhhCC----CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 702 MGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 702 ~al~~v~~i~~~~~----~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
..++.+.++++..+ ++||+..|||. .+++.+++.+||+.|-++|+++..
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 148 EVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 56677777776653 48999999997 599999999999999999999943
No 270
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.95 E-value=6.2e-05 Score=78.98 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=74.9
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
..+..++|+.+.+.|+|.+.++.... .+.+ .+..+.+++++++.+ ++|++..
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~------------------------~~~~---~~~~~~~i~~i~~~~-~~pv~~~ 79 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDG------------------------AKGG---EPVNLELIEEIVKAV-GIPVQVG 79 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCc------------------------cccC---CCCCHHHHHHHHHhc-CCCEEEe
Confidence 34889999999999999999963211 0111 233488899999988 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
|||++.+|+.+++.+||+.|.++|+.+. .|+++.++.+.+
T Consensus 80 GgI~~~e~~~~~~~~Gad~vvigs~~l~-dp~~~~~i~~~~ 119 (234)
T cd04732 80 GGIRSLEDIERLLDLGVSRVIIGTAAVK-NPELVKELLKEY 119 (234)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECchHHh-ChHHHHHHHHHc
Confidence 9999999999999999999999999994 588888887654
No 271
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00023 Score=72.93 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=100.8
Q ss_pred ceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC---
Q psy16199 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--- 641 (842)
Q Consensus 565 pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p--- 641 (842)
++-+++.+|. -+...+.+. .++|++.+-+-. .--.+|+++.++++..-+.+-+-+=+|..-
T Consensus 75 ~~~vQvGGGI--Rs~~~v~~l-l~~G~~rViiGt-------------~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav 138 (241)
T COG0106 75 DVPVQVGGGI--RSLEDVEAL-LDAGVARVIIGT-------------AAVKNPDLVKELCEEYGDRIVVALDARDGKVAV 138 (241)
T ss_pred CCCEEeeCCc--CCHHHHHHH-HHCCCCEEEEec-------------ceecCHHHHHHHHHHcCCcEEEEEEccCCcccc
Confidence 4567776553 233333333 346999888732 113789999988887653221112222211
Q ss_pred -Ch----h-cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 642 -NI----T-NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 642 -~~----~-~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
.+ . ++.++++.+++.|+..|..|+= + .-|-++|+. ++.+.++++.+
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI-------~---------------~DGtl~G~n-----~~l~~~l~~~~- 190 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVGLAHILYTDI-------S---------------RDGTLSGPN-----VDLVKELAEAV- 190 (241)
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEec-------c---------------cccccCCCC-----HHHHHHHHHHh-
Confidence 01 1 6889999999999999999652 1 124456654 78889999998
Q ss_pred CCcEEEecCcCCHHHHHHHHHh-CCCEEEEehhhhccCc
Q psy16199 716 NFPILGIGGIDSADVALQFIQA-GAHAVQICSAVQNQDF 753 (842)
Q Consensus 716 ~ipIi~~GGI~t~~da~~~l~~-GA~~Vqv~ta~l~~gp 753 (842)
++|+|++|||.|-+|+...-.+ |...|-+|+|++....
T Consensus 191 ~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 191 DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 8999999999999999988888 9999999999995433
No 272
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.88 E-value=0.00011 Score=74.04 Aligned_cols=128 Identities=23% Similarity=0.232 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe---cCChh--cHHHHHHHH
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---TPNIT--NITDIAKAA 653 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---~p~~~--~~~~~a~~~ 653 (842)
..+.... .+.|||-|++=+ | .|.-...+.+.+.+-++.|++...-++.+|+ ++.++ .....++.+
T Consensus 80 ~~Ea~~a-i~~GAdEiDmVi---n------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~ 149 (228)
T COG0274 80 AAEAREA-IENGADEIDMVI---N------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIA 149 (228)
T ss_pred HHHHHHH-HHcCCCeeeeee---e------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHH
Confidence 3343333 345999988733 1 1233347889999999999999876677887 45554 467788889
Q ss_pred HHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEecCcCCHHHHH
Q psy16199 654 YEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGIGGIDSADVAL 732 (842)
Q Consensus 654 ~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~GGI~t~~da~ 732 (842)
.++|+|+|--+ .|...+.+ +++-+..+++... ++-|=++|||+|.+|+.
T Consensus 150 ~~aGAdFVKTS--------------------------TGf~~~gA----T~edv~lM~~~vg~~vgvKaSGGIrt~eda~ 199 (228)
T COG0274 150 IEAGADFVKTS--------------------------TGFSAGGA----TVEDVKLMKETVGGRVGVKASGGIRTAEDAK 199 (228)
T ss_pred HHhCCCEEEcC--------------------------CCCCCCCC----CHHHHHHHHHHhccCceeeccCCcCCHHHHH
Confidence 99999999752 22222222 2555666666553 48899999999999999
Q ss_pred HHHHhCCCEEEEeh
Q psy16199 733 QFIQAGAHAVQICS 746 (842)
Q Consensus 733 ~~l~~GA~~Vqv~t 746 (842)
.++.+||.-+...+
T Consensus 200 ~~i~aga~RiGtSs 213 (228)
T COG0274 200 AMIEAGATRIGTSS 213 (228)
T ss_pred HHHHHhHHHhcccc
Confidence 99999977665444
No 273
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00015 Score=72.67 Aligned_cols=167 Identities=23% Similarity=0.263 Sum_probs=103.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc---------cccCC---HH---------------------------
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT---------NIRAV---PE--------------------------- 190 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~---------~~~~~---~~--------------------------- 190 (842)
|+|||+|++|+.+|.+|++.|.+ |++++|+-.. .++.. ++
T Consensus 33 ViIVGaGPsGLtAAyyLAk~g~k-V~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~ 111 (262)
T COG1635 33 VIIVGAGPSGLTAAYYLAKAGLK-VAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEF 111 (262)
T ss_pred EEEECcCcchHHHHHHHHhCCce-EEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHHH
Confidence 99999999999999999999986 9999987421 11100 00
Q ss_pred ---HHHHHHhcCcEEecCCCceEEEccCC-cEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHh-h
Q psy16199 191 ---EVQLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLE-A 265 (842)
Q Consensus 191 ---~~~~~~~~gV~i~~~~~v~~v~~~~~-~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~-~ 265 (842)
....+.+.|.++.....++.+...++ +|.+|.++=+...-.|-. =+...+++++|+-+||...+-..++. .
T Consensus 112 ~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh----vDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 112 ASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH----VDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc----cCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 12234567999999999998876666 798888764322222210 12347889999999997633333332 2
Q ss_pred cC--CcccCCCC--------CeeeCCCCCCCCCCCeEEeccCCC----Cc---hhHHHHHHHHHHHHHHHHHHHH
Q psy16199 266 IK--PVKLDKYG--------YPEVNYTTMATSVPGVFCGGDTAN----LS---DTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 266 l~--gl~~~~~G--------~i~vd~~~~~Ts~~gVfa~GD~~~----~~---~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
.. +.++-... .+.|+ .+ +--.||+|++|=++. .| +..-.=.-+|+.||..|...|.
T Consensus 188 ~~~l~~~~~Ge~~mw~e~~E~lvV~-~T-~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 188 IPELGIEVPGEKSMWAERGEDLVVE-NT-GEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccccccCCCcchhhhHHHHHHHh-cc-ccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 10 12221111 12232 12 235899999996532 12 1222335789999998877664
No 274
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.85 E-value=0.00046 Score=73.82 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh---CCccEEEEe-------cCCh--hc
Q psy16199 578 DWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS---VKIPFFVKL-------TPNI--TN 645 (842)
Q Consensus 578 ~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~---~~~Pv~vKl-------~p~~--~~ 645 (842)
.....++.+.+.|+|++.+-+..-. ...+.+.+.++.+++. .++|+++=. .... +.
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~------------~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~ 161 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGS------------ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEV 161 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCC------------hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHH
Confidence 3344455566679999888642111 0123344445555443 478988732 1111 23
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCc
Q psy16199 646 ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGI 725 (842)
Q Consensus 646 ~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI 725 (842)
+...++.+.+.|+|.|... + .| ..+.++++.+.. .+||.++|||
T Consensus 162 i~~a~~~a~e~GAD~vKt~--------------------------~---~~------~~~~l~~~~~~~-~ipV~a~GGi 205 (267)
T PRK07226 162 VAHAARVAAELGADIVKTN--------------------------Y---TG------DPESFREVVEGC-PVPVVIAGGP 205 (267)
T ss_pred HHHHHHHHHHHCCCEEeeC--------------------------C---CC------CHHHHHHHHHhC-CCCEEEEeCC
Confidence 4556788889999999652 0 01 146667776665 5999999999
Q ss_pred C--CHHHHHHHH----HhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 726 D--SADVALQFI----QAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 726 ~--t~~da~~~l----~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
. |.+++.+++ ++||+++.++++++.. +. +....+.|...+
T Consensus 206 ~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~-~~-p~~~~~~l~~~v 251 (267)
T PRK07226 206 KTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH-ED-PEAITRAISAVV 251 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC-CC-HHHHHHHHHHHH
Confidence 9 899998886 8999999999999954 44 555666666554
No 275
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.84 E-value=0.00043 Score=79.18 Aligned_cols=177 Identities=14% Similarity=0.094 Sum_probs=105.7
Q ss_pred ccccCCcccccCC--CCCCCCCChhHHHHhhhhhhCc---cccccccCccCCCcc--eeEeeccCCccccCCccccCCCc
Q psy16199 463 KKLNSDGVSLQNG--LPKRQINTPVETILSVKDVIGQ---AVQRVTNYTELDNKK--QVVALINDDMCINCGKCYMACND 535 (842)
Q Consensus 463 ~~~~~~~~g~~~g--~dk~~~~~~~~~~~~l~~~~G~---~~g~vt~~~~~~n~~--~~~~~~~~~~~in~~~c~~Gfn~ 535 (842)
+..|.|||++++| +|+. +.+..+.++ || +++||| ||.|||+ |++|+..+ ..|. +||+|
T Consensus 10 Gl~l~nPv~~aag~~~~~~------~~~~~~~~~-g~Gavv~kti~--~~~gn~~~pr~~~~~~~--~~~~----~g~~n 74 (420)
T PRK08318 10 GIKSPNPFWLASAPPTNKY------YNVARAFEA-GWGGVVWKTLG--PPIVNVSSPRFGALVKE--DRRF----IGFNN 74 (420)
T ss_pred CEecCCCcEeCCcCCCCCH------HHHHHHHHh-CCCEEEEeecC--CCCCCCCCCeEEEecCC--Cccc----ccccC
Confidence 5679999999999 7777 444444454 65 899999 9999997 68887543 2444 77776
Q ss_pred cchhhhhcCccccccccccccccccccccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCC
Q psy16199 536 SGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQ 615 (842)
Q Consensus 536 ~G~dai~~~~~~~~~~~~~~~~~~~~~~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~ 615 (842)
.|+.. ....+.|.+..+++.
T Consensus 75 ~~~~s--------------------------------~~~~~~~~~~~~~~~---------------------------- 94 (420)
T PRK08318 75 IELIT--------------------------------DRPLEVNLREIRRVK---------------------------- 94 (420)
T ss_pred ccccc--------------------------------ccCHHHHHHHHHHHH----------------------------
Confidence 55210 112343443333322
Q ss_pred CHHHHHHHHHHHHhhC-CccEEEEecC--ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccC
Q psy16199 616 DPEMVRNISLWVRSSV-KIPFFVKLTP--NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYG 692 (842)
Q Consensus 616 ~~~~~~~ii~~v~~~~-~~Pv~vKl~p--~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~g 692 (842)
+.. +.|+++=+.. +.+++.+.++.+++.|+|+|.+ |-. -|.- ......
T Consensus 95 -------------~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~iel-N~s------------cP~~--~~~~~~- 145 (420)
T PRK08318 95 -------------RDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIEL-NFG------------CPHG--MSERGM- 145 (420)
T ss_pred -------------hhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEE-eCC------------CCCC--ccccCC-
Confidence 111 2466665543 2456788899999999999988 321 1110 000111
Q ss_pred CCCCCccccchHHHHHHHHhhCCCCcEEE--ecCcCCHHHHHHHHH-hCCCEEEE
Q psy16199 693 GVSGNATRPMGLKAVSSIAKMFPNFPILG--IGGIDSADVALQFIQ-AGAHAVQI 744 (842)
Q Consensus 693 G~sG~~~~p~al~~v~~i~~~~~~ipIi~--~GGI~t~~da~~~l~-~GA~~Vqv 744 (842)
|..--.......+.++.+++.+ ++||+. .-.+.+..++.+.+. +||++|.+
T Consensus 146 g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 146 GSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred cccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 1111122345677788888776 577664 334455666666554 89999983
No 276
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.84 E-value=0.00055 Score=71.85 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=88.4
Q ss_pred HhHHHHHHHHHhhcCcCEE--EEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHh---hCCccEEEEecC---------
Q psy16199 576 KDDWLELSKKTEKAGADAL--ELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRS---SVKIPFFVKLTP--------- 641 (842)
Q Consensus 576 ~e~~~~~a~~~~~agaD~i--elN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~---~~~~Pv~vKl~p--------- 641 (842)
.+.+...++.+.+.|+|++ ++|++.. +.+.+.+.+..+++ ..++|+++=...
T Consensus 75 ~~~~~~~v~~a~~~Ga~~v~~~~~~~~~--------------~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~ 140 (235)
T cd00958 75 DKVLVASVEDAVRLGADAVGVTVYVGSE--------------EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEK 140 (235)
T ss_pred chhhhcCHHHHHHCCCCEEEEEEecCCc--------------hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCcc
Confidence 3444444566667799998 5554311 12333344444443 357899884432
Q ss_pred ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 642 NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
+-..+...++.+.+.|+|.|.+.++. .++.++++.+.. .+||++
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~-----------------------------------~~~~~~~i~~~~-~~pvv~ 184 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTG-----------------------------------DAESFKEVVEGC-PVPVVI 184 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCC-----------------------------------CHHHHHHHHhcC-CCCEEE
Confidence 11234455788899999999883320 156677888877 599999
Q ss_pred ecCc--CCHHH----HHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 722 IGGI--DSADV----ALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 722 ~GGI--~t~~d----a~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
+||| .|.+| +.+++++||++|.++|++++. ++ .....+.++
T Consensus 185 ~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~-~d-p~~~~~~~~ 231 (235)
T cd00958 185 AGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR-PD-PVAMLRAIS 231 (235)
T ss_pred eCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC-CC-HHHHHHHHH
Confidence 9997 67766 677788999999999999954 44 333334443
No 277
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.00023 Score=71.38 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=102.2
Q ss_pred cccceEEEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--------C
Q psy16199 562 CLSILIASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--------K 632 (842)
Q Consensus 562 ~~~pvi~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--------~ 632 (842)
+..|+-+. +| .+.+|+.+ +..+|||-|-||-.. ..+|+++.++.+..=... .
T Consensus 73 vfiPltVG--GGI~s~eD~~~----ll~aGADKVSINsaA-------------v~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 73 VFIPLTVG--GGIRSVEDARK----LLRAGADKVSINSAA-------------VKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred ceeeeEec--CCcCCHHHHHH----HHHcCCCeeeeChhH-------------hcChHHHHHHHHHhCCceEEEEEEeee
Confidence 34455432 22 35566553 334699999998421 267887777666543221 0
Q ss_pred --------ccEEEEecC-C-hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccc
Q psy16199 633 --------IPFFVKLTP-N-ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM 702 (842)
Q Consensus 633 --------~Pv~vKl~p-~-~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~ 702 (842)
--|+.+-.- + --+..++|+.+++.||--|.++ . +|-+. ..-||.
T Consensus 134 ~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLt-s------mD~DG------------tk~GyD------- 187 (256)
T COG0107 134 VPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLT-S------MDRDG------------TKAGYD------- 187 (256)
T ss_pred ccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEe-e------ecccc------------cccCcC-------
Confidence 112222211 1 1278999999999999888772 1 22221 122232
Q ss_pred hHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHHHHHHHHHHHhcCC
Q psy16199 703 GLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDYITGLQTLLYLKST 772 (842)
Q Consensus 703 al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~ 772 (842)
+.+++.++..+ ++|||++||.-+.+|.++.+..| ||++..++-|-+..+ -+ .++++||...|.
T Consensus 188 -l~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~-~i----~evK~yL~~~gi 251 (256)
T COG0107 188 -LELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEI-TI----GEVKEYLAEQGI 251 (256)
T ss_pred -HHHHHHHHHhC-CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcc-cH----HHHHHHHHHcCC
Confidence 78899999998 89999999999999999999876 999987777775433 23 456777777655
No 278
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.80 E-value=0.00017 Score=75.31 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=91.2
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh-C--Cc------cEE
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS-V--KI------PFF 636 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~-~--~~------Pv~ 636 (842)
+-+++.+| .....++.+.+ +.||+.+-+|-. ..++|+.+.++++..-+. + .+ .+.
T Consensus 74 ~~i~vgGG--Irs~ed~~~ll-~~Ga~~Vvigt~-------------~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 74 IPIQVGGG--IRSIEDAERLL-DAGADRVVIGTE-------------ALEDPELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp SEEEEESS--E-SHHHHHHHH-HTT-SEEEESHH-------------HHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred ccEEEeCc--cCcHHHHHHHH-HhCCCEEEeChH-------------HhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 34445444 22333333333 359999988632 236788888888877552 1 11 111
Q ss_pred EEecCCh--hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC
Q psy16199 637 VKLTPNI--TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF 714 (842)
Q Consensus 637 vKl~p~~--~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~ 714 (842)
++--... .++.++++.+.+.|+..|++++- + .-|-++|+. +++++++++.+
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi-------~---------------~dGt~~G~d-----~~~~~~l~~~~ 190 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDI-------D---------------RDGTMQGPD-----LELLKQLAEAV 190 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEET-------T---------------TTTTSSS-------HHHHHHHHHHH
T ss_pred ecCccccCCcCHHHHHHHHHhcCCcEEEEeec-------c---------------ccCCcCCCC-----HHHHHHHHHHc
Confidence 1111111 26899999999999999998541 1 123345543 67888898888
Q ss_pred CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 715 PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 715 ~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
++|+|++|||.+.+|+.+....|+++|.++++++
T Consensus 191 -~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 191 -NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp -SSEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred -CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 8999999999999999999999999999999997
No 279
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.00073 Score=68.31 Aligned_cols=169 Identities=22% Similarity=0.194 Sum_probs=114.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL 639 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl 639 (842)
..+-.||.+ .+...+.+-++.++++|+|.|.+.+- +||.. +=-.+++++++.++.|+=|-+
T Consensus 4 ~~iapSILs-aD~~~l~~el~~~~~agad~iH~DVMDghFVPNiT--------------fGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 4 MKIAPSILS-ADFARLGEELKALEAAGADLIHIDVMDGHFVPNIT--------------FGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred ceeeeehhh-CCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcc--------------cCHHHHHHHhhcCCCceEEEE
Confidence 457778874 57788888888999999999999863 56531 112678888888888887776
Q ss_pred cCChhcHHHHHHHHHHCCCCEEEEe-------------------------cCCCccccCCCCCCCCCccc-CCCccccCC
Q psy16199 640 TPNITNITDIAKAAYEGKADGVSAI-------------------------NTVSGLMSLSADGNPWPAVG-TKKLTTYGG 693 (842)
Q Consensus 640 ~p~~~~~~~~a~~~~~~G~d~i~v~-------------------------nt~~~~~~~~~~~~~~p~~~-~~~~~~~gG 693 (842)
.- .+...+.+.+.++|+|.|+++ |--.+...+. .-.+.++ .--.+...|
T Consensus 69 MV--~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~---~~l~~vD~VllMsVnPG 143 (220)
T COG0036 69 MV--ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALE---PVLDDVDLVLLMSVNPG 143 (220)
T ss_pred ec--CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHH---HHHhhCCEEEEEeECCC
Confidence 42 233445555555555555544 3211111100 0001111 001345688
Q ss_pred CCCCccccchHHHHHHHHhhCC---CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCch
Q psy16199 694 VSGNATRPMGLKAVSSIAKMFP---NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFT 754 (842)
Q Consensus 694 ~sG~~~~p~al~~v~~i~~~~~---~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~ 754 (842)
++|..-.|..++-++++++..+ ++-|-.-||| +.+.+.++.++||+.+.+||++. .+.+
T Consensus 144 fgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF-~~~d 205 (220)
T COG0036 144 FGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALF-GADD 205 (220)
T ss_pred CcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEe-CCcc
Confidence 9999989999999999998775 4678899998 78899999999999999999766 5555
No 280
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.78 E-value=0.00032 Score=70.70 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=97.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEE-EEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF-VKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~-vKl~p~ 642 (842)
.++++=+. +.++++..+.++.+.+.|++.||+-+..|. .. ++++.+++.. |.. +.-.+
T Consensus 12 ~~~~~v~r-~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~--------------~~---e~~~~~~~~~--~~~~~g~gt- 70 (187)
T PRK07455 12 HRAIAVIR-APDLELGLQMAEAVAAGGMRLIEITWNSDQ--------------PA---ELISQLREKL--PECIIGTGT- 70 (187)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------------HH---HHHHHHHHhC--CCcEEeEEE-
Confidence 56666665 578999999999999999999999764432 12 3344444332 221 11111
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCc-ccCCCccc-----cCCCCCCccc----cchHHHHHHHHh
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPA-VGTKKLTT-----YGGVSGNATR----PMGLKAVSSIAK 712 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~-~~~~~~~~-----~gG~sG~~~~----p~al~~v~~i~~ 712 (842)
+... +-++.+.+.|+|+|+.-..-.+....... ...+. ++-+..+. .-|.+-=.++ +...++++.+++
T Consensus 71 vl~~-d~~~~A~~~gAdgv~~p~~~~~~~~~~~~-~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~ 148 (187)
T PRK07455 71 ILTL-EDLEEAIAAGAQFCFTPHVDPELIEAAVA-QDIPIIPGALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQG 148 (187)
T ss_pred EEcH-HHHHHHHHcCCCEEECCCCCHHHHHHHHH-cCCCEEcCcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHh
Confidence 1122 56788899999999763321100000000 00010 01010000 0111100012 234788999999
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
.++++|+++.||| +++++.+++++||++|.++|+++.
T Consensus 149 ~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 149 PLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred hCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 8877999999999 889999999999999999999873
No 281
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.78 E-value=0.00094 Score=68.80 Aligned_cols=48 Identities=33% Similarity=0.614 Sum_probs=43.0
Q ss_pred hHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 703 GLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 703 al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.++.++++++..+++||++.||| +.+++.+++.+||++|.++|+++..
T Consensus 147 g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGA 194 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcC
Confidence 48889999888845999999999 7999999999999999999998853
No 282
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.77 E-value=0.00075 Score=70.74 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=90.8
Q ss_pred EeccCC-CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe------cC
Q psy16199 569 SIMCTY-NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL------TP 641 (842)
Q Consensus 569 si~~g~-~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl------~p 641 (842)
++.+|. +.++...+. ++|+|-+-||... ..+|+++.++ ...- ..+-+.+-. +.
T Consensus 77 ~vGGGIrs~e~~~~~l----~~Ga~rvvigT~a-------------~~~p~~l~~~-~~~~--~~ivvslD~k~g~v~~~ 136 (241)
T PRK14114 77 QIGGGIRSLDYAEKLR----KLGYRRQIVSSKV-------------LEDPSFLKFL-KEID--VEPVFSLDTRGGKVAFK 136 (241)
T ss_pred EEecCCCCHHHHHHHH----HCCCCEEEECchh-------------hCCHHHHHHH-HHhC--CCEEEEEEccCCEEeeC
Confidence 554442 344444433 3699998886322 2678888888 3321 122222211 11
Q ss_pred Ch-----hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC
Q psy16199 642 NI-----TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 642 ~~-----~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ 716 (842)
++ .+..++++.+++.|+..|++++= + .-|-++|+. +++++++++.. +
T Consensus 137 gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI-------~---------------rdGt~~G~d-----~el~~~l~~~~-~ 188 (241)
T PRK14114 137 GWLAEEEIDPVSLLKRLKEYGLEEIVHTEI-------E---------------KDGTLQEHD-----FSLTRKIAIEA-E 188 (241)
T ss_pred CCeecCCCCHHHHHHHHHhcCCCEEEEEee-------c---------------hhhcCCCcC-----HHHHHHHHHHC-C
Confidence 11 15789999999999999999541 1 123345544 78888888886 7
Q ss_pred CcEEEecCcCCHHHHHHHHHh-----C-CCEEEEehhhhc
Q psy16199 717 FPILGIGGIDSADVALQFIQA-----G-AHAVQICSAVQN 750 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~-----G-A~~Vqv~ta~l~ 750 (842)
+|||++|||.+.+|+.+...+ | +++|-++++++.
T Consensus 189 ~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 189 VKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred CCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 999999999999999999887 6 999999999883
No 283
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.77 E-value=0.00094 Score=67.54 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=102.7
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~ 642 (842)
.++++-+. +.+.++..++++.+.+.|...||+.++.|+. .+.++.+++..+ +-|.+ .+
T Consensus 4 ~~vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~tp~a-----------------~~~I~~l~~~~~~~~vGA---GT 62 (201)
T PRK06015 4 QPVIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRTPAA-----------------LDAIRAVAAEVEEAIVGA---GT 62 (201)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCccH-----------------HHHHHHHHHHCCCCEEee---Ee
Confidence 56777775 6789999999999999999999999877742 245566665542 22222 12
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCC-Ccc-----ccCCCCCCccccc----hHHHHHHHHh
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTK-KLT-----TYGGVSGNATRPM----GLKAVSSIAK 712 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~-~~~-----~~gG~sG~~~~p~----al~~v~~i~~ 712 (842)
+.+ .+-++.+.++|+++|+.=+........-. ....|.+.+- ..+ ..-|.+-=.++|- ...+++.++.
T Consensus 63 Vl~-~e~a~~ai~aGA~FivSP~~~~~vi~~a~-~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~ 140 (201)
T PRK06015 63 ILN-AKQFEDAAKAGSRFIVSPGTTQELLAAAN-DSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSS 140 (201)
T ss_pred CcC-HHHHHHHHHcCCCEEECCCCCHHHHHHHH-HcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHh
Confidence 333 34578899999999876443221110000 0112221100 000 0011111223452 2588999999
Q ss_pred hCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 713 MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 713 ~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
-+|++|++.+||| +.+++.+++++|+..+..++.+.
T Consensus 141 plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 141 PLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred hCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhC
Confidence 8999999999999 67999999999988887777776
No 284
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.76 E-value=0.00041 Score=72.64 Aligned_cols=120 Identities=13% Similarity=0.230 Sum_probs=85.7
Q ss_pred hcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe-------cCChhcHHHHHHHHHHCCCCE
Q psy16199 588 KAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL-------TPNITNITDIAKAAYEGKADG 660 (842)
Q Consensus 588 ~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl-------~p~~~~~~~~a~~~~~~G~d~ 660 (842)
++||+.+-+|... ..+ +.+.++++...+. ++=+.+-. .+...++.++++.+.+. ++.
T Consensus 98 ~~Ga~~viigt~~-------------~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 161 (233)
T cd04723 98 KRGASRVIVGTET-------------LPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEE 161 (233)
T ss_pred HcCCCeEEEccee-------------ccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCe
Confidence 4599999886432 255 7777877777431 11111111 12234688999999999 999
Q ss_pred EEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCC
Q psy16199 661 VSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAH 740 (842)
Q Consensus 661 i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~ 740 (842)
+++++- + ..|..+|+ .++.++++.+.. ++||+++|||+|.+|+.+++.+||+
T Consensus 162 li~~di---------~-------------~~G~~~g~-----~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~~~G~~ 213 (233)
T cd04723 162 LIVLDI---------D-------------RVGSGQGP-----DLELLERLAARA-DIPVIAAGGVRSVEDLELLKKLGAS 213 (233)
T ss_pred EEEEEc---------C-------------ccccCCCc-----CHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 998542 1 12223332 278888888886 7999999999999999999999999
Q ss_pred EEEEehhhhcc
Q psy16199 741 AVQICSAVQNQ 751 (842)
Q Consensus 741 ~Vqv~ta~l~~ 751 (842)
.|-++|++...
T Consensus 214 ~vivGsal~~g 224 (233)
T cd04723 214 GALVASALHDG 224 (233)
T ss_pred EEEEehHHHcC
Confidence 99999999854
No 285
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.76 E-value=0.00055 Score=70.11 Aligned_cols=126 Identities=22% Similarity=0.217 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEe-cCCh--hcHHHHHHHHH
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKL-TPNI--TNITDIAKAAY 654 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl-~p~~--~~~~~~a~~~~ 654 (842)
-..-++.+.+.|||+|++.++-- .....+.+.+.+-+.++++..+ +|+-+=+ .+.+ +.+...++.+.
T Consensus 71 k~~eve~A~~~GAdevdvv~~~g---------~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~ 141 (203)
T cd00959 71 KVAEAREAIADGADEIDMVINIG---------ALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAI 141 (203)
T ss_pred HHHHHHHHHHcCCCEEEEeecHH---------HHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 33335555567999999975321 1112455666777777777654 5554411 2222 35778899999
Q ss_pred HCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC-CCCcEEEecCcCCHHHHHH
Q psy16199 655 EGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQ 733 (842)
Q Consensus 655 ~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~-~~ipIi~~GGI~t~~da~~ 733 (842)
++|+|.|..+ | |... .+.++.-++.+++.. ..+||-++|||.|.+++.+
T Consensus 142 e~GaD~IKTs-T-------------------------G~~~----~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~ 191 (203)
T cd00959 142 EAGADFIKTS-T-------------------------GFGP----GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALA 191 (203)
T ss_pred HhCCCEEEcC-C-------------------------CCCC----CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHH
Confidence 9999999873 1 1111 112244444444443 2599999999999999999
Q ss_pred HHHhCCCEEE
Q psy16199 734 FIQAGAHAVQ 743 (842)
Q Consensus 734 ~l~~GA~~Vq 743 (842)
++.+||+-+.
T Consensus 192 ~~~~g~~riG 201 (203)
T cd00959 192 MIEAGATRIG 201 (203)
T ss_pred HHHhChhhcc
Confidence 9999998653
No 286
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.75 E-value=0.003 Score=65.33 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=114.5
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhh-CCccEEEEec
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSS-VKIPFFVKLT 640 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~-~~~Pv~vKl~ 640 (842)
+..||++ .+.-.+.+-+++++++|+|.|.+.+- +||.. + . -++++++++. +++|+=|=+.
T Consensus 6 i~pSil~-ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t----f------g----~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 6 IAPSILS-ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLT----I------G----PMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEeehhh-cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcc----c------C----HHHHHHHHhhCCCCCEEEEec
Confidence 6788875 57888888999999999999999863 56521 1 1 2567888877 5777666653
Q ss_pred CChhcHHHHHHHHHHCCCCEEEEecCC--------------CccccCCCCC-CC-------CCccc-CCCccccCCCCCC
Q psy16199 641 PNITNITDIAKAAYEGKADGVSAINTV--------------SGLMSLSADG-NP-------WPAVG-TKKLTTYGGVSGN 697 (842)
Q Consensus 641 p~~~~~~~~a~~~~~~G~d~i~v~nt~--------------~~~~~~~~~~-~~-------~p~~~-~~~~~~~gG~sG~ 697 (842)
- .+...+.+.+.++|+|-|+++=-. +-..++.++. ++ .+.++ .--.+...|++|.
T Consensus 71 v--~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 71 V--EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred c--CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 2 234445555555555555544110 0001111110 00 01111 0013446788899
Q ss_pred ccccchHHHHHHHHhhCC----CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHH
Q psy16199 698 ATRPMGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTL 766 (842)
Q Consensus 698 ~~~p~al~~v~~i~~~~~----~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~ 766 (842)
.-.|..++-|+++++..+ ++.|-..||| +.+.+.++..+||+.+-+||++... .. ..+..+.+++.
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~-~d-~~~~~~~lr~~ 218 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNA-PD-YAQVIAQMRAA 218 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCC-CC-HHHHHHHHHHH
Confidence 988999999988887532 4679999999 6899999999999999999998743 33 34444444443
No 287
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.75 E-value=0.00021 Score=75.27 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=75.5
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.|.+.. ++. . .| ++.....++++.+.+ ++||...|
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivD---------Ld~-------------~---~g---~~~n~~~i~~i~~~~-~~pv~vgG 82 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVD---------LDA-------------A---FG---RGSNRELLAEVVGKL-DVKVELSG 82 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEe---------ccc-------------c---CC---CCccHHHHHHHHHHc-CCCEEEcC
Confidence 3788999999999999999942 221 0 01 223478999999998 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
||+|.+|+.+++.+||+-|.++|+++ +.|.++.++.+.+.
T Consensus 83 Girs~edv~~~l~~Ga~kvviGs~~l-~~p~l~~~i~~~~~ 122 (241)
T PRK14024 83 GIRDDESLEAALATGCARVNIGTAAL-ENPEWCARVIAEHG 122 (241)
T ss_pred CCCCHHHHHHHHHCCCCEEEECchHh-CCHHHHHHHHHHhh
Confidence 99999999999999999999999999 45999999887654
No 288
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.74 E-value=0.00022 Score=74.74 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=73.2
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.+.+++- + |-..| .+..++.++++++.+ ++||+..|
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dl---------d---------------~~~~g---~~~~~~~i~~i~~~~-~~pv~~~G 81 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDL---------D---------------GAKAG---KPVNLELIEAIVKAV-DIPVQVGG 81 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeC---------C---------------ccccC---CcccHHHHHHHHHHC-CCCEEEcC
Confidence 47889999999999999999542 1 00111 233488899998987 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||++.+|+.+++.+||+.|.++++++ .+|.++.++.+.+
T Consensus 82 GI~~~ed~~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~ 120 (233)
T PRK00748 82 GIRSLETVEALLDAGVSRVIIGTAAV-KNPELVKEACKKF 120 (233)
T ss_pred CcCCHHHHHHHHHcCCCEEEECchHH-hCHHHHHHHHHHh
Confidence 99999999999999999999999999 4587777766554
No 289
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.74 E-value=0.00074 Score=69.46 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=104.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~ 642 (842)
.++++-+. +.+.++..++++.+.+.|...||+-+..|+. .+.++++.+..++.. ++-|.+= +
T Consensus 15 ~~vi~Vvr-~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a-------------~~~i~~l~~~~~~~~p~~~vGaG---T 77 (222)
T PRK07114 15 TGMVPVFY-HADVEVAKKVIKACYDGGARVFEFTNRGDFA-------------HEVFAELVKYAAKELPGMILGVG---S 77 (222)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH-------------HHHHHHHHHHHHhhCCCeEEeeE---e
Confidence 46666664 5789999999999999999999999877742 234444444443322 2223322 2
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCC-Ccc-----ccCCCCCCccccc---hHHHHHHHHhh
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTK-KLT-----TYGGVSGNATRPM---GLKAVSSIAKM 713 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~-~~~-----~~gG~sG~~~~p~---al~~v~~i~~~ 713 (842)
+.+ .+-++.+.++|+++|+.=+........-.+ ...|.+.+- ..+ ..-|.+-=-++|. ...+++.++.-
T Consensus 78 Vl~-~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~-~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p 155 (222)
T PRK07114 78 IVD-AATAALYIQLGANFIVTPLFNPDIAKVCNR-RKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGP 155 (222)
T ss_pred CcC-HHHHHHHHHcCCCEEECCCCCHHHHHHHHH-cCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhcc
Confidence 223 345788999999999874432211110000 112222100 000 0011121122342 36888889888
Q ss_pred CCCCcEEEecCcCC-HHHHHHHHHhCCCEEEEehhhh
Q psy16199 714 FPNFPILGIGGIDS-ADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 714 ~~~ipIi~~GGI~t-~~da~~~l~~GA~~Vqv~ta~l 749 (842)
+|+++++.+|||.- .+++.+++.+|+.+|.+|+.+.
T Consensus 156 ~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 156 MPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 88999999999974 6999999999999999999997
No 290
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.71 E-value=0.00056 Score=69.55 Aligned_cols=167 Identities=25% Similarity=0.298 Sum_probs=108.2
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEec-
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT- 640 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~- 640 (842)
|.+||++ .+...+.+.+++++++|+|.+.+.+- +||.. -.+ ++++++++.+++|+=|=+.
T Consensus 2 I~pSil~-ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~----------~g~----~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILS-ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLT----------FGP----DIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGG-S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-----------B-H----HHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhh-CCHHHHHHHHHHHHHcCCCEEEEeecccccCCccc----------CCH----HHHHHHhhcCCCcEEEEeee
Confidence 5678875 57888999999999999999999863 56531 122 5677778778777776662
Q ss_pred --C--------------------ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccC-CCccccCCCCCC
Q psy16199 641 --P--------------------NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT-KKLTTYGGVSGN 697 (842)
Q Consensus 641 --p--------------------~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~-~~~~~~gG~sG~ 697 (842)
| ...++.++.+.+.+.|+..=++.|.-.+...+. .-.+.++. .-.+...|++|.
T Consensus 67 ~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~---~~l~~vD~VlvMsV~PG~~Gq 143 (201)
T PF00834_consen 67 ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELE---PYLDQVDMVLVMSVEPGFGGQ 143 (201)
T ss_dssp SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGT---TTGCCSSEEEEESS-TTTSSB
T ss_pred ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHH---HHhhhcCEEEEEEecCCCCcc
Confidence 1 112466777777777877555556433322221 11122210 012445789999
Q ss_pred ccccchHHHHHHHHhhCC----CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 698 ATRPMGLKAVSSIAKMFP----NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 698 ~~~p~al~~v~~i~~~~~----~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.-.|.+++-|+++++..+ ++.|..-||| +.+.+.++.++||+.+.+||++..+
T Consensus 144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 144 KFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp --HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 999999999988877543 4899999999 6678999999999999999998743
No 291
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.68 E-value=0.0014 Score=68.70 Aligned_cols=148 Identities=13% Similarity=0.216 Sum_probs=98.6
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe----
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---- 639 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---- 639 (842)
.|+-+++.. ++...-..+|. .+|+|+|.+|.-|=......|+ +..+...+.++-+.+. .++.|+.-+
T Consensus 80 ~p~GvnvL~-nd~~aal~iA~---a~ga~FIRv~~~~g~~~~d~G~---~~~~a~e~~r~r~~l~--~~v~i~adV~~kh 150 (257)
T TIGR00259 80 IPLGINVLR-NDAVAALAIAM---AVGAKFIRVNVLTGVYASDQGI---IEGNAGELIRYKKLLG--SEVKILADIVVKH 150 (257)
T ss_pred CCeeeeeec-CCCHHHHHHHH---HhCCCEEEEccEeeeEeccccc---ccccHHHHHHHHHHcC--CCcEEEeceeecc
Confidence 477777753 34443334333 3599999999765433333321 2233444444444444 355655433
Q ss_pred cCCh--hcHHHHHHHHHHCC-CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC
Q psy16199 640 TPNI--TNITDIAKAAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 640 ~p~~--~~~~~~a~~~~~~G-~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ 716 (842)
...+ ..+.+.++.+...| +|+|++|++..+ .+..++.++++++..++
T Consensus 151 ~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG------------------------------~~~d~~~l~~vr~~~~~ 200 (257)
T TIGR00259 151 AVHLGNRDLESIALDTVERGLADAVILSGKTTG------------------------------TEVDLELLKLAKETVKD 200 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC------------------------------CCCCHHHHHHHHhccCC
Confidence 3322 26778888877777 999999764221 44558888888887767
Q ss_pred CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC
Q psy16199 717 FPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g 752 (842)
+|++.+||| +++.+.+++.. |++|-|+|.+-..|
T Consensus 201 ~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 201 TPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred CeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCC
Confidence 999999998 89999999997 99999999998555
No 292
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.67 E-value=0.00091 Score=69.39 Aligned_cols=175 Identities=22% Similarity=0.199 Sum_probs=102.1
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhc
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITN 645 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~ 645 (842)
+.+||.+ .+...+.+.++.+.+.|+|.|++.+--.. +.++.....+.++++++.++.|+-+-+.-+ +
T Consensus 6 ~~~s~~~-~~~~~~~~~~~~~~~~G~~~i~l~~~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--d 72 (220)
T PRK05581 6 IAPSILS-ADFARLGEEVKAVEAAGADWIHVDVMDGH----------FVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--N 72 (220)
T ss_pred EEcchhc-CCHHHHHHHHHHHHHcCCCEEEEeCccCC----------cCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--C
Confidence 6777864 57788999999999999999999532100 001111234666777765544443333221 3
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCcc--------------ccCCCC-CCCCCc---c-cCCC----ccccCCCCCCccccc
Q psy16199 646 ITDIAKAAYEGKADGVSAINTVSGL--------------MSLSAD-GNPWPA---V-GTKK----LTTYGGVSGNATRPM 702 (842)
Q Consensus 646 ~~~~a~~~~~~G~d~i~v~nt~~~~--------------~~~~~~-~~~~p~---~-~~~~----~~~~gG~sG~~~~p~ 702 (842)
..+..+.+.++|+|+|+++...... .++.+. .+.... + .... .+...|.+|....+.
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 4455566678899998877532110 001110 000000 0 0000 011234566555566
Q ss_pred hHHHHHHHHhhCCC----CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchh
Q psy16199 703 GLKAVSSIAKMFPN----FPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV 755 (842)
Q Consensus 703 al~~v~~i~~~~~~----ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~ 755 (842)
.++.+.++++..+. .+|...|||+. +++.+++.+|+|.|-++|+++. .++.
T Consensus 153 ~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~-~~d~ 207 (220)
T PRK05581 153 VLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG-APDY 207 (220)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC-CCCH
Confidence 67777777665431 34667899976 8999999999999999999994 3443
No 293
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.66 E-value=0.001 Score=76.24 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=84.1
Q ss_pred HHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEE-ecCChhcHHHHHHHHHHCCCCE
Q psy16199 582 LSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVK-LTPNITNITDIAKAAYEGKADG 660 (842)
Q Consensus 582 ~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vK-l~p~~~~~~~~a~~~~~~G~d~ 660 (842)
.++.+.++|+|+|.+.-. .+...+.++++.+++ .++++++- +++. +..+.++.+.+.|+|.
T Consensus 73 ~v~~a~~aGAdgV~v~g~---------------~~~~~~~~~i~~a~~-~G~~~~~g~~s~~--t~~e~~~~a~~~GaD~ 134 (430)
T PRK07028 73 EVEMAAKAGADIVCILGL---------------ADDSTIEDAVRAARK-YGVRLMADLINVP--DPVKRAVELEELGVDY 134 (430)
T ss_pred HHHHHHHcCCCEEEEecC---------------CChHHHHHHHHHHHH-cCCEEEEEecCCC--CHHHHHHHHHhcCCCE
Confidence 344455679999887521 112234567777776 47777764 5543 2344567788899999
Q ss_pred EEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCC
Q psy16199 661 VSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAH 740 (842)
Q Consensus 661 i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~ 740 (842)
|.+.-. +++....+..++.++++++.+ ++||++.||| +.+.+.+++.+||+
T Consensus 135 I~~~pg---------------------------~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAd 185 (430)
T PRK07028 135 INVHVG---------------------------IDQQMLGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGAD 185 (430)
T ss_pred EEEEec---------------------------cchhhcCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCC
Confidence 976311 000000123367888888877 5999999999 78999999999999
Q ss_pred EEEEehhhhcc
Q psy16199 741 AVQICSAVQNQ 751 (842)
Q Consensus 741 ~Vqv~ta~l~~ 751 (842)
.|.++|+++..
T Consensus 186 gv~vGsaI~~~ 196 (430)
T PRK07028 186 IVIVGGNIIKS 196 (430)
T ss_pred EEEEChHHcCC
Confidence 99999999853
No 294
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.65 E-value=0.0032 Score=64.40 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=91.9
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEE-ecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVK-LTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vK-l~p~ 642 (842)
.|+++-++.. ++.. ..++.+.++|+|+|-++... .++.+.++++++++ .++++++= ++|.
T Consensus 54 ~~i~~~~~v~-~~~~--~~~~~~~~aGad~i~~h~~~---------------~~~~~~~~i~~~~~-~g~~~~v~~~~~~ 114 (202)
T cd04726 54 KIIVADLKTA-DAGA--LEAEMAFKAGADIVTVLGAA---------------PLSTIKKAVKAAKK-YGKEVQVDLIGVE 114 (202)
T ss_pred CEEEEEEEec-cccH--HHHHHHHhcCCCEEEEEeeC---------------CHHHHHHHHHHHHH-cCCeEEEEEeCCC
Confidence 5788776642 3332 23456667899999997422 12446677787775 36777664 4443
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
+..+..+ +...|+|.+.+.-.. .++..| .+...+.++++++.. ++||+..
T Consensus 115 --t~~e~~~-~~~~~~d~v~~~~~~-----------------------~~~~~~---~~~~~~~i~~~~~~~-~~~i~~~ 164 (202)
T cd04726 115 --DPEKRAK-LLKLGVDIVILHRGI-----------------------DAQAAG---GWWPEDDLKKVKKLL-GVKVAVA 164 (202)
T ss_pred --CHHHHHH-HHHCCCCEEEEcCcc-----------------------cccccC---CCCCHHHHHHHHhhc-CCCEEEE
Confidence 3445555 777899987772100 001111 123467777777764 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
|||+ .+++.+++.+||+.|-+||+++..
T Consensus 165 GGI~-~~~i~~~~~~Gad~vvvGsai~~~ 192 (202)
T cd04726 165 GGIT-PDTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred CCcC-HHHHHHHHhcCCCEEEEeehhcCC
Confidence 9995 999999999999999999998843
No 295
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.65 E-value=0.0015 Score=69.64 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh---CCccEEEEec------CCh--hcHH
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS---VKIPFFVKLT------PNI--TNIT 647 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~---~~~Pv~vKl~------p~~--~~~~ 647 (842)
....++.+.+.|+|+|.+-...-. ..+.+.+ +.++.+++. .++|+++.+. +.. ..+.
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g~-----------~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~ 159 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVGS-----------DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVA 159 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecCC-----------chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHH
Confidence 334466666779999888543110 0122333 455555554 4789988543 211 2344
Q ss_pred HHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcC-
Q psy16199 648 DIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGID- 726 (842)
Q Consensus 648 ~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~- 726 (842)
+.++.+.+.|+|.|... +. ..++.++++.+.. .+||.+.|||.
T Consensus 160 ~~~~~a~~~GADyikt~--------------------------~~---------~~~~~l~~~~~~~-~iPVva~GGi~~ 203 (258)
T TIGR01949 160 HAARLGAELGADIVKTP--------------------------YT---------GDIDSFRDVVKGC-PAPVVVAGGPKT 203 (258)
T ss_pred HHHHHHHHHCCCEEecc--------------------------CC---------CCHHHHHHHHHhC-CCcEEEecCCCC
Confidence 55678889999999861 00 0266777887776 69999999999
Q ss_pred -CHHHHHHHH----HhCCCEEEEehhhhccCchhHHHHHHHHHH
Q psy16199 727 -SADVALQFI----QAGAHAVQICSAVQNQDFTVVDDYITGLQT 765 (842)
Q Consensus 727 -t~~da~~~l----~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~ 765 (842)
|.+++.+.+ .+||+.+.++++++.. ++ +....+.|..
T Consensus 204 ~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~-~d-p~~~~~~l~~ 245 (258)
T TIGR01949 204 NSDREFLQMIKDAMEAGAAGVAVGRNIFQH-DD-PVGITKAVCK 245 (258)
T ss_pred CCHHHHHHHHHHHHHcCCcEEehhhHhhcC-CC-HHHHHHHHHH
Confidence 666665555 8999999999999954 44 3444444444
No 296
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.64 E-value=0.00059 Score=69.92 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=89.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCC----------CCCCcccCCCCHHHH-------------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMG----------ERGMGLACGQDPEMV------------- 620 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~----------~~~~G~~~~~~~~~~------------- 620 (842)
.++++-+. +.+.++..++++.+.+.|.+.||+-+..|+... .--.|+.--.+++.+
T Consensus 15 ~~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 15 GPVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 56666665 679999999999999999999999987774310 000111111111111
Q ss_pred ----HHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC
Q psy16199 621 ----RNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696 (842)
Q Consensus 621 ----~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG 696 (842)
.+++++.++ .++|++ |......+ +..+.++|++.|.+. |. ...| |
T Consensus 94 P~~~~~vi~~a~~-~~i~~i----PG~~TptE-i~~a~~~Ga~~vKlF----------------Pa------~~~g---g 142 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLI----PGVSTPSE-LMLGMELGLRTFKFF----------------PA------EASG---G 142 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEe----CCCCCHHH-HHHHHHCCCCEEEEc----------------cc------hhcc---C
Confidence 122222221 123322 22223344 455666777776661 10 0011 1
Q ss_pred CccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 697 NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
..+++.++.-+|+++++.+||| +.+++.+++.+|+..+..++.+.
T Consensus 143 -------~~~lk~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 143 -------VKMLKALAGPFPDVRFCPTGGI-SPANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred -------HHHHHHHhccCCCCeEEEeCCC-CHHHHHHHHhCCCEEEEEChHhC
Confidence 6778888888889999999999 67999999999966666666555
No 297
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.63 E-value=0.0004 Score=72.98 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=92.3
Q ss_pred cceEEEeccCCC-HhHH-----HHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh---CCcc
Q psy16199 564 SILIASIMCTYN-KDDW-----LELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS---VKIP 634 (842)
Q Consensus 564 ~pvi~si~~g~~-~e~~-----~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~---~~~P 634 (842)
.++++++..|.. .+.- ..-++.+.+.|||+|++-+.--.. ...+.+.+.+.++.+++. ..+|
T Consensus 57 ~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~---------~~~~~~~~~~~i~~v~~~~~~~gl~ 127 (236)
T PF01791_consen 57 VGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGAL---------GSGNEDEVIEEIAAVVEECHKYGLK 127 (236)
T ss_dssp EEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHH---------HTTHHHHHHHHHHHHHHHHHTSEEE
T ss_pred cceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeecccccc---------ccccHHHHHHHHHHHHHHHhcCCcE
Confidence 456666654432 2222 345555666799999986532100 012244445555555544 4688
Q ss_pred EEEEecCChhc---------HHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHH
Q psy16199 635 FFVKLTPNITN---------ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLK 705 (842)
Q Consensus 635 v~vKl~p~~~~---------~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~ 705 (842)
+++=.-+.-.+ +...++.+.+.|+|.|-..- |+..| ..+...+
T Consensus 128 vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t--------------------------g~~~~--~t~~~~~ 179 (236)
T PF01791_consen 128 VILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST--------------------------GKPVG--ATPEDVE 179 (236)
T ss_dssp EEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE---------------------------SSSSC--SHHHHHH
T ss_pred EEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC--------------------------Ccccc--ccHHHHH
Confidence 88874333223 67888999999999998732 11111 1233456
Q ss_pred HHHHHHhhCCCCc----EEEecCc------CCHHHHHHHHHhCC--CEEEEehhhhc
Q psy16199 706 AVSSIAKMFPNFP----ILGIGGI------DSADVALQFIQAGA--HAVQICSAVQN 750 (842)
Q Consensus 706 ~v~~i~~~~~~ip----Ii~~GGI------~t~~da~~~l~~GA--~~Vqv~ta~l~ 750 (842)
.++++.+.. .+| |..+||| ++.+++.+++.+|| .++..|+.+++
T Consensus 180 ~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 180 LMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 666666655 478 9999999 99999999999999 78888877763
No 298
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.62 E-value=0.00047 Score=72.22 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
++.++|+.+++.|++.|.+++--. .+.. .+.-++.++++++.. ++||+..||
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~----------------------~~~~-----~~~n~~~~~~i~~~~-~~pv~~~gg 82 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDA----------------------SKRG-----REPLFELISNLAEEC-FMPLTVGGG 82 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC----------------------cccC-----CCCCHHHHHHHHHhC-CCCEEEECC
Confidence 788999999999999999954211 1111 123378889999887 799999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHH
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITG 762 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~ 762 (842)
|++.+|+.+++.+||+.|.++|+++ .+|.++.++.+.
T Consensus 83 i~~~~d~~~~~~~G~~~vilg~~~l-~~~~~~~~~~~~ 119 (232)
T TIGR03572 83 IRSLEDAKKLLSLGADKVSINTAAL-ENPDLIEEAARR 119 (232)
T ss_pred CCCHHHHHHHHHcCCCEEEEChhHh-cCHHHHHHHHHH
Confidence 9999999999999999999999999 568888877654
No 299
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.62 E-value=0.0016 Score=65.87 Aligned_cols=50 Identities=34% Similarity=0.679 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.|..++.++++++.. ++||++.||| +.+++.+++.+||++|.++|+++..
T Consensus 135 ~~~~~~~~~~~~~~~-~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 135 PPLGLELLREIAELV-EIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred CCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 456688888888775 7999999999 5799999999999999999999854
No 300
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.0071 Score=60.93 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=93.6
Q ss_pred CCHhHHHHHHHHHhhcC-cCEEEEec-cCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAG-ADALELNL-SCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~ag-aD~ielN~-scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~ 651 (842)
++.+|....++++.+++ -|.|-|-+ +++.+ +.-|+-.+.+-.+.+.+. +.-|+.-+++| .-+|+
T Consensus 80 ~taeEAv~tArlARE~~~t~wiKlEVi~d~~t---------LlPD~~etl~Aae~Lv~e-GF~VlPY~~dD----~v~ar 145 (262)
T COG2022 80 RTAEEAVRTARLAREALGTNWIKLEVIGDEKT---------LLPDPIETLKAAEQLVKE-GFVVLPYTTDD----PVLAR 145 (262)
T ss_pred CCHHHHHHHHHHHHHHccCCeEEEEEecCCcc---------cCCChHHHHHHHHHHHhC-CCEEeeccCCC----HHHHH
Confidence 68999999999888754 68888765 23332 235665555555555543 34444444443 56799
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVA 731 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da 731 (842)
++++.|+.+|---.. | + | || .-+.....++.|.++. ++|||..-||-++.|+
T Consensus 146 rLee~GcaavMPl~a--------------P-I--------G--Sg--~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdA 197 (262)
T COG2022 146 RLEEAGCAAVMPLGA--------------P-I--------G--SG--LGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDA 197 (262)
T ss_pred HHHhcCceEeccccc--------------c-c--------c--CC--cCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHH
Confidence 999999987753111 0 0 1 11 1122355666677777 8999999999999999
Q ss_pred HHHHHhCCCEEEEehhhhcc
Q psy16199 732 LQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 732 ~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.+++++|+|+|.+-|++-..
T Consensus 198 a~aMElG~DaVL~NTAiA~A 217 (262)
T COG2022 198 AQAMELGADAVLLNTAIARA 217 (262)
T ss_pred HHHHhcccceeehhhHhhcc
Confidence 99999999999999998743
No 301
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.0004 Score=73.17 Aligned_cols=91 Identities=19% Similarity=0.275 Sum_probs=72.7
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++++.+.+.|++.+.+.+--. ...+ .....+.++++.+.+ ++|++..|
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~------------------------~~~~---~~~~~~~i~~i~~~~-~~~l~v~G 83 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDG------------------------AFEG---ERKNAEAIEKIIEAV-GVPVQLGG 83 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechh------------------------hhcC---CcccHHHHHHHHHHc-CCcEEEcC
Confidence 4788999999999999998843210 0111 223377888998887 69999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||++.+|+..++.+||+.|.+++..+. .|.++.++.+.+
T Consensus 84 Gi~~~~~~~~~~~~Ga~~v~iGs~~~~-~~~~~~~i~~~~ 122 (241)
T PRK13585 84 GIRSAEDAASLLDLGVDRVILGTAAVE-NPEIVRELSEEF 122 (241)
T ss_pred CcCCHHHHHHHHHcCCCEEEEChHHhh-ChHHHHHHHHHh
Confidence 999999999999999999999999984 588887776664
No 302
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.60 E-value=0.0014 Score=68.80 Aligned_cols=137 Identities=9% Similarity=0.033 Sum_probs=92.9
Q ss_pred EEEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEE--E-----
Q psy16199 567 IASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFV--K----- 638 (842)
Q Consensus 567 i~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~v--K----- 638 (842)
-+++.+| .+.++...+. +.|+|.+-+|-.. ..+|+.+.++.+..-+. +-+.+ |
T Consensus 76 ~v~vgGGIrs~e~~~~~l----~~Ga~~vvigT~a-------------~~~p~~~~~~~~~~g~~--ivvslD~k~~g~~ 136 (243)
T TIGR01919 76 VEELSGGRRDDSSLRAAL----TGGRARVNGGTAA-------------LENPWWAAAVIRYGGDI--VAVGLDVLEDGEW 136 (243)
T ss_pred CEEEcCCCCCHHHHHHHH----HcCCCEEEECchh-------------hCCHHHHHHHHHHcccc--EEEEEEEecCCce
Confidence 3455444 2455544433 3599999885311 26788888887765322 11111 2
Q ss_pred --ec-----CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHH
Q psy16199 639 --LT-----PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIA 711 (842)
Q Consensus 639 --l~-----p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~ 711 (842)
+. ..-.+..++++.+.+.|+..|++++- + .-|-++|+. ++++++++
T Consensus 137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI-------~---------------~dGt~~G~d-----~~l~~~l~ 189 (243)
T TIGR01919 137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDS-------K---------------KDGLSGGPN-----ELLLEVVA 189 (243)
T ss_pred EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEec-------C---------------CcccCCCcC-----HHHHHHHH
Confidence 10 11226789999999999999999541 1 123345544 67888888
Q ss_pred hhCCCCcEEEecCcCCHHHHHHHH---HhCCCEEEEehhhhc
Q psy16199 712 KMFPNFPILGIGGIDSADVALQFI---QAGAHAVQICSAVQN 750 (842)
Q Consensus 712 ~~~~~ipIi~~GGI~t~~da~~~l---~~GA~~Vqv~ta~l~ 750 (842)
+.. ++|||++|||.+.+|+.+.- ..|+++|-++++++.
T Consensus 190 ~~~-~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~ 230 (243)
T TIGR01919 190 ART-DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYA 230 (243)
T ss_pred hhC-CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHc
Confidence 886 79999999999999998863 369999999999884
No 303
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.60 E-value=0.0044 Score=66.49 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=92.8
Q ss_pred CCCHhHHHHHHHHHhhc-CcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHH
Q psy16199 573 TYNKDDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 573 g~~~e~~~~~a~~~~~a-gaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~ 651 (842)
-++.+|....|+++.++ +-|.|-|-+--.+.. +..|+..+.+..+.+.+. ++-+++=+++| ...|+
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~--------llpd~~~~v~aa~~L~~~-Gf~v~~yc~~d----~~~a~ 212 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKT--------LYPDMVETLKATEILVKE-GFQVMVYCSDD----PIAAK 212 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCC--------cccCHHHHHHHHHHHHHC-CCEEEEEeCCC----HHHHH
Confidence 36899999999998886 578888876433321 124555555555554332 44555556665 46689
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVA 731 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da 731 (842)
++.+.|+-+|-- +|.. .| ||..+. .-+.++.+.+.. ++||+..+||.+++|+
T Consensus 213 ~l~~~g~~avmP----------------l~~p-------IG--sg~gv~--~p~~i~~~~e~~-~vpVivdAGIg~~sda 264 (326)
T PRK11840 213 RLEDAGAVAVMP----------------LGAP-------IG--SGLGIQ--NPYTIRLIVEGA-TVPVLVDAGVGTASDA 264 (326)
T ss_pred HHHhcCCEEEee----------------cccc-------cc--CCCCCC--CHHHHHHHHHcC-CCcEEEeCCCCCHHHH
Confidence 999999933221 1111 12 333332 245566666664 7999999999999999
Q ss_pred HHHHHhCCCEEEEehhhhcc
Q psy16199 732 LQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 732 ~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.+++++|||+|.+.|++...
T Consensus 265 ~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 265 AVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred HHHHHcCCCEEEEcceeccC
Confidence 99999999999999999843
No 304
>PRK08005 epimerase; Validated
Probab=97.59 E-value=0.0028 Score=64.67 Aligned_cols=166 Identities=18% Similarity=0.119 Sum_probs=106.7
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p 641 (842)
+.+||++ .+...+.+-+++++++|+|.|.+.+- .||. . -. -++++++++.+++|+=|=+.-
T Consensus 3 i~pSil~-ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~----t------fG----~~~i~~l~~~t~~~~DvHLMv 67 (210)
T PRK08005 3 LHPSLAS-ADPLRYAEALTALHDAPLGSLHLDIEDTSFINNI----T------FG----MKTIQAVAQQTRHPLSFHLMV 67 (210)
T ss_pred EEeehhh-CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----c------cC----HHHHHHHHhcCCCCeEEEecc
Confidence 4567875 57888888899999999999999763 4542 1 11 256677777776675555421
Q ss_pred C-----------------------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCccc-CCCccccCCCCCC
Q psy16199 642 N-----------------------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG-TKKLTTYGGVSGN 697 (842)
Q Consensus 642 ~-----------------------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~-~~~~~~~gG~sG~ 697 (842)
. ..++.++.+.+.+.|+.+=++.|--.+...+. .-.+.++ .--.+...|+.|.
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~---~~l~~vD~VlvMsV~PGf~GQ 144 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYR---YLALQLDALMIMTSEPDGRGQ 144 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHH---HHHHhcCEEEEEEecCCCccc
Confidence 1 01233444444455544444444211111000 0001111 0013456788899
Q ss_pred ccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 698 ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 698 ~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
.-.|.+++-|+++++..++..|-.-||| +.+.+.++.++||+.+-+||++..
T Consensus 145 ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 145 QFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred eecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhC
Confidence 9899999999999987655679999998 689999999999999999999874
No 305
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.59 E-value=0.00041 Score=75.22 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=61.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc----------cccCC-----HHH-----HHHHHhcCcEEecCCCc
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRAV-----PEE-----VQLAWEEKCEFLPFMSP 208 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~----------~~~~~-----~~~-----~~~~~~~gV~i~~~~~v 208 (842)
+|+|||||+.|+++|..|.+.|.+ |+++++.+.. ..|.. ..+ .+.+.+.|+++++ ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEE
Confidence 389999999999999999999976 9999976410 01211 111 1234566899987 677
Q ss_pred eEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 209 ~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+.+...+. ...++..+ + .++.+|.||+|+|..|
T Consensus 80 ~~v~~~~~-~~~v~~~~-------------~--~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 80 IKVDLSDR-PFKVKTGD-------------G--KEYTAKAVIIATGASA 112 (300)
T ss_pred EEEEecCC-eeEEEeCC-------------C--CEEEeCEEEECCCCCc
Confidence 77763322 22233221 1 3689999999999984
No 306
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.57 E-value=0.00043 Score=72.38 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=74.2
Q ss_pred hcHHHHHHHHHH-CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 644 TNITDIAKAAYE-GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 644 ~~~~~~a~~~~~-~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
.++.++|+.+.+ .|+|.+.+. |++.. ..| ++..++.|+++.+.+ ++||...
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~iv---------DLd~a---------------~~~---~~~n~~~I~~i~~~~-~~pi~vG 82 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIV---------DLIGA---------------KAQ---HAREFDYIKSLRRLT-TKDIEVG 82 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEE---------ECccc---------------ccC---CcchHHHHHHHHhhc-CCeEEEc
Confidence 367789999999 799999993 33210 011 344588999999987 7999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
|||+|.+|+.+++.+||+-|-++|+.+ +.|.+++++.+..
T Consensus 83 GGIrs~e~v~~~l~~Ga~kvvigt~a~-~~~~~l~~~~~~f 122 (234)
T PRK13587 83 GGIRTKSQIMDYFAAGINYCIVGTKGI-QDTDWLKEMAHTF 122 (234)
T ss_pred CCcCCHHHHHHHHHCCCCEEEECchHh-cCHHHHHHHHHHc
Confidence 999999999999999999999999999 4599998887654
No 307
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.56 E-value=0.0028 Score=65.89 Aligned_cols=129 Identities=22% Similarity=0.200 Sum_probs=81.7
Q ss_pred HHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEE
Q psy16199 583 SKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVS 662 (842)
Q Consensus 583 a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~ 662 (842)
++.+.++|+|++-+. |.. +. ..++.+.+.++..++. ++-+++ +.++. +-++.+.+.|.+.|.
T Consensus 78 ~~~l~~~G~~~vii~----~se--r~------~~~~e~~~~v~~a~~~-Gl~~I~-~v~~~----~~~~~~~~~~~~~I~ 139 (223)
T PRK04302 78 PEAVKDAGAVGTLIN----HSE--RR------LTLADIEAVVERAKKL-GLESVV-CVNNP----ETSAAAAALGPDYVA 139 (223)
T ss_pred HHHHHHcCCCEEEEe----ccc--cc------cCHHHHHHHHHHHHHC-CCeEEE-EcCCH----HHHHHHhcCCCCEEE
Confidence 566667899999885 321 11 2345577778777764 665444 55543 234456677888776
Q ss_pred EecCCCccccCCCCCCCCCcccCCCccccC-CCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCE
Q psy16199 663 AINTVSGLMSLSADGNPWPAVGTKKLTTYG-GVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHA 741 (842)
Q Consensus 663 v~nt~~~~~~~~~~~~~~p~~~~~~~~~~g-G~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~ 741 (842)
+-++-. + +.| +.++ +......+.++.+++...++||+..|||.+++++.+++..|||+
T Consensus 140 ~~p~~~--------------i------gt~~~~~~-~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadG 198 (223)
T PRK04302 140 VEPPEL--------------I------GTGIPVSK-AKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADG 198 (223)
T ss_pred EeCccc--------------c------ccCCCCCc-CCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCE
Confidence 532100 0 000 1111 11112244555566644469999999999999999999999999
Q ss_pred EEEehhhhc
Q psy16199 742 VQICSAVQN 750 (842)
Q Consensus 742 Vqv~ta~l~ 750 (842)
|.|||+++.
T Consensus 199 vlVGsa~l~ 207 (223)
T PRK04302 199 VLLASGVVK 207 (223)
T ss_pred EEEehHHhC
Confidence 999999994
No 308
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.53 E-value=0.00058 Score=74.72 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=28.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+-+|..+.+.|.+ |+|+++.+
T Consensus 6 viIIGgGpAGlMaA~~aa~~G~~-V~lid~~~ 36 (408)
T COG2081 6 VIIIGGGPAGLMAAISAAKAGRR-VLLIDKGP 36 (408)
T ss_pred EEEECCCHHHHHHHHHHhhcCCE-EEEEecCc
Confidence 99999999999999999999975 99998665
No 309
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.52 E-value=0.0027 Score=66.65 Aligned_cols=147 Identities=15% Similarity=0.058 Sum_probs=98.8
Q ss_pred ceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHH-HhhCCccEEEE-----
Q psy16199 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-RSSVKIPFFVK----- 638 (842)
Q Consensus 565 pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v-~~~~~~Pv~vK----- 638 (842)
++-+++.+|.. . +-++.+.+.|||-+-||-..-..+ .-+|+++.++++.. .+.+=+-|=+|
T Consensus 83 ~~~vqvGGGIR---~-e~i~~~l~~Ga~rViigT~Av~~~---------~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~ 149 (262)
T PLN02446 83 PGGLQVGGGVN---S-ENAMSYLDAGASHVIVTSYVFRDG---------QIDLERLKDLVRLVGKQRLVLDLSCRKKDGR 149 (262)
T ss_pred CCCEEEeCCcc---H-HHHHHHHHcCCCEEEEchHHHhCC---------CCCHHHHHHHHHHhCCCCEEEEEEEEecCCC
Confidence 45677766654 2 445555667999999974322110 13599999998887 32221111122
Q ss_pred ----ecC--C--hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHH
Q psy16199 639 ----LTP--N--ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710 (842)
Q Consensus 639 ----l~p--~--~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i 710 (842)
+.. . -.++.+++..+.+.|+..|++++- + .-|-++|+. +++++++
T Consensus 150 ~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI-------~---------------rDGtl~G~d-----~el~~~l 202 (262)
T PLN02446 150 YYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGV-------D---------------VEGKRLGID-----EELVALL 202 (262)
T ss_pred EEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEE-------c---------------CCCcccCCC-----HHHHHHH
Confidence 111 0 115778888899999999999541 1 123345544 7888899
Q ss_pred HhhCCCCcEEEecCcCCHHHHHHHHHh--CCCEEEEehhhh-ccC
Q psy16199 711 AKMFPNFPILGIGGIDSADVALQFIQA--GAHAVQICSAVQ-NQD 752 (842)
Q Consensus 711 ~~~~~~ipIi~~GGI~t~~da~~~l~~--GA~~Vqv~ta~l-~~g 752 (842)
++.. ++|||++|||.|.+|+.+...+ |...|-+|+|+. |.|
T Consensus 203 ~~~~-~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g 246 (262)
T PLN02446 203 GEHS-PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGG 246 (262)
T ss_pred HhhC-CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCC
Confidence 9986 7999999999999999999987 578899999983 355
No 310
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.50 E-value=0.00037 Score=70.23 Aligned_cols=147 Identities=25% Similarity=0.381 Sum_probs=87.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCC----------CCCCcccCCCCHHHHHHHH---------
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMG----------ERGMGLACGQDPEMVRNIS--------- 624 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~----------~~~~G~~~~~~~~~~~~ii--------- 624 (842)
.++++-+. +.+.++..++++.+.+.|...||+.+..|+... +--.|+.--.+.+.+++.+
T Consensus 8 ~~iiaVir-~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 8 NKIIAVIR-GDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp HSEEEEET-TSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 46777675 678999999999999999999999998774210 0001111112222222222
Q ss_pred --------HHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCC
Q psy16199 625 --------LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSG 696 (842)
Q Consensus 625 --------~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG 696 (842)
++.++ .++|++-=. ...-|+ ..+.++|++.|.+ .|. ...| |
T Consensus 87 P~~~~~v~~~~~~-~~i~~iPG~----~TptEi-~~A~~~G~~~vK~----------------FPA------~~~G---G 135 (196)
T PF01081_consen 87 PGFDPEVIEYARE-YGIPYIPGV----MTPTEI-MQALEAGADIVKL----------------FPA------GALG---G 135 (196)
T ss_dssp SS--HHHHHHHHH-HTSEEEEEE----SSHHHH-HHHHHTT-SEEEE----------------TTT------TTTT---H
T ss_pred CCCCHHHHHHHHH-cCCcccCCc----CCHHHH-HHHHHCCCCEEEE----------------ecc------hhcC---c
Confidence 11111 123332211 112232 3355777777777 111 0111 1
Q ss_pred CccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 697 NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 697 ~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
..+++.++.-+|+++++.+||| +.+++.+++.+|+.+|.+||.+..
T Consensus 136 -------~~~ik~l~~p~p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 136 -------PSYIKALRGPFPDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp -------HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred -------HHHHHHHhccCCCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcC
Confidence 6788889888889999999999 468999999999999999999983
No 311
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.49 E-value=0.0048 Score=66.16 Aligned_cols=169 Identities=13% Similarity=0.059 Sum_probs=109.6
Q ss_pred ccceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEe-----ccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh---CCcc
Q psy16199 563 LSILIASIMCTYNKDDWLELSKKTEKAGADALELN-----LSCPHGMGERGMGLACGQDPEMVRNISLWVRSS---VKIP 634 (842)
Q Consensus 563 ~~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN-----~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~---~~~P 634 (842)
..||++-+-.|-++..+.+.+++++++|+.+|.|- =-|.|..+. |....-+.+...+.+++++++ .+++
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~---~~~~l~s~ee~~~kI~Aa~~a~~~~~~~ 154 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGND---VAQPQASVEEFCGKIRAGKDAQTTEDFM 154 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCC---CcccccCHHHHHHHHHHHHHhccCCCeE
Confidence 47999999877788999999999999999999882 124332211 111234667777777777765 2578
Q ss_pred EEEE----e-cCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHH
Q psy16199 635 FFVK----L-TPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSS 709 (842)
Q Consensus 635 v~vK----l-~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~ 709 (842)
|++. + ...+++..+-+++..++|||+|.+... -.+ .....+++++
T Consensus 155 IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~--------------------------~~~----~~ei~~~~~~ 204 (285)
T TIGR02320 155 IIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR--------------------------KKD----PDEILEFARR 204 (285)
T ss_pred EEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC--------------------------CCC----HHHHHHHHHH
Confidence 8888 3 234668888899999999999998210 001 1112344444
Q ss_pred HHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 710 IAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 710 i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
+...+|++|++.+.+-.-...+.++-++|.+.|..+..++.. ....+.+-++.++
T Consensus 205 ~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a---a~~a~~~~~~~~~ 259 (285)
T TIGR02320 205 FRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA---AYAAMQQVAERIL 259 (285)
T ss_pred hhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH---HHHHHHHHHHHHH
Confidence 444445678887654222235677778999999888877733 3444444444433
No 312
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.48 E-value=0.004 Score=65.23 Aligned_cols=147 Identities=14% Similarity=0.257 Sum_probs=96.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe----
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---- 639 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---- 639 (842)
.|+-+++.. ++......+|. .+|+|+|-+|.-|=......|+ +..+...+.+.-+.+.. ++.|+.-+
T Consensus 81 ~p~GVnvL~-nd~~aalaiA~---A~ga~FIRv~~~~g~~~~d~G~---~~~~a~e~~r~R~~l~a--~v~ilaDV~~kh 151 (254)
T PF03437_consen 81 VPVGVNVLR-NDPKAALAIAA---ATGADFIRVNVFVGAYVTDEGI---IEGCAGELLRYRKRLGA--DVKILADVHVKH 151 (254)
T ss_pred CCEEeeeec-CCCHHHHHHHH---HhCCCEEEecCEEceecccCcc---ccccHHHHHHHHHHcCC--CeEEEeeechhh
Confidence 688888863 34443334333 3589999999776544433332 12223333333333322 35555444
Q ss_pred cCChh--cHHHHHHHH-HHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC
Q psy16199 640 TPNIT--NITDIAKAA-YEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 640 ~p~~~--~~~~~a~~~-~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ 716 (842)
+..+. ++.+.++.+ +..++|+|+++++.. | .|..++.+.++++..+
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T-----------------------G-------~~~~~~~l~~vr~~~~- 200 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKAT-----------------------G-------EPPDPEKLKRVREAVP- 200 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCccc-----------------------C-------CCCCHHHHHHHHhcCC-
Confidence 22222 466666665 788999999965422 1 4556888999999996
Q ss_pred CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC
Q psy16199 717 FPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g 752 (842)
+||+..+|+ |.+.+.+++.. ||++-|||.|-..|
T Consensus 201 ~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G 234 (254)
T PF03437_consen 201 VPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDG 234 (254)
T ss_pred CCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCC
Confidence 999999997 89999999976 99999999998665
No 313
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.48 E-value=0.0031 Score=73.45 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=101.5
Q ss_pred HHHHHHHhhcCcCEEEEecc---CCCCCCCCCCcccCCCCHHHHHHHHHHHHhh-C----C---c----c----------
Q psy16199 580 LELSKKTEKAGADALELNLS---CPHGMGERGMGLACGQDPEMVRNISLWVRSS-V----K---I----P---------- 634 (842)
Q Consensus 580 ~~~a~~~~~agaD~ielN~s---cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~-~----~---~----P---------- 634 (842)
.+-++++.++|||-|-||-. .|..+-..+ -..+|+++.++.+..-+. + + . |
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~----~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~ 412 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIASG----VKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKV 412 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhccc----cccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccc
Confidence 44455566689999999853 230000011 136789988888876322 1 1 0 1
Q ss_pred --------------EEEEecCC--hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCc
Q psy16199 635 --------------FFVKLTPN--ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNA 698 (842)
Q Consensus 635 --------------v~vKl~p~--~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~ 698 (842)
|.++---. --+..++++.+++.|+..|.+++ ++-+ |-++|..
T Consensus 413 ~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~-------id~D---------------Gt~~G~d 470 (538)
T PLN02617 413 TNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNC-------IDCD---------------GQGKGFD 470 (538)
T ss_pred cccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEee-------cccc---------------ccccCcC
Confidence 22221111 12688999999999999998843 2221 2233432
Q ss_pred cccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhHHHHHHHHHHHHHhcCC
Q psy16199 699 TRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLKST 772 (842)
Q Consensus 699 ~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~ 772 (842)
+++++.+++.+ ++|||++||+.+.+|+.+.+. .||+++..++-|-+..+. +.+ ++.+|...|.
T Consensus 471 -----~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~-~~~----~k~~l~~~gi 534 (538)
T PLN02617 471 -----IELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVP-ISS----VKEHLLEEGI 534 (538)
T ss_pred -----HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCC-HHH----HHHHHHHCCC
Confidence 78888898887 799999999999999999998 789999888877755333 334 4555555544
No 314
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.47 E-value=0.00077 Score=70.17 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
++.++|+.+.+. ++.+.+... + |-..| ++..+++++++++.. ++||++.||
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDl---------d---------------ga~~g---~~~n~~~i~~i~~~~-~~pv~~gGG 81 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDL---------D---------------GAFEG---KPKNLDVVKNIIRET-GLKVQVGGG 81 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEEC---------c---------------chhcC---CcchHHHHHHHHhhC-CCCEEEcCC
Confidence 788999999998 999988432 1 11222 333488899998886 799999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
|+|.+|+.+++.+||+.|-++|+.+ + |.+++++.+..
T Consensus 82 Irs~edv~~l~~~G~~~vivGtaa~-~-~~~l~~~~~~~ 118 (228)
T PRK04128 82 LRTYESIKDAYEIGVENVIIGTKAF-D-LEFLEKVTSEF 118 (228)
T ss_pred CCCHHHHHHHHHCCCCEEEECchhc-C-HHHHHHHHHHc
Confidence 9999999999999999999999998 4 88888876644
No 315
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.46 E-value=0.00096 Score=70.98 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=73.4
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.|.+++ ++ ..+.. ...-++.++++.+.. ++||++.|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~D---------l~-------------~~~~~-----~~~n~~~i~~i~~~~-~~pv~~gG 81 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLD---------ID-------------ASKRG-----SEPNYELIENLASEC-FMPLCYGG 81 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEE---------CC-------------CCcCC-----CcccHHHHHHHHHhC-CCCEEECC
Confidence 4788999999999999999954 22 11111 223388899999886 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||++.+|+.+++.+||+.|-++|+++ .+|.++.++.+..
T Consensus 82 Gi~s~~d~~~l~~~G~~~vvigs~~~-~~~~~~~~~~~~~ 120 (258)
T PRK01033 82 GIKTLEQAKKIFSLGVEKVSINTAAL-EDPDLITEAAERF 120 (258)
T ss_pred CCCCHHHHHHHHHCCCCEEEEChHHh-cCHHHHHHHHHHh
Confidence 99999999999999999999999988 5688887776654
No 316
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.44 E-value=0.0068 Score=67.66 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=102.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEE-EecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFV-KLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~v-Kl~p~ 642 (842)
.++++-++. .++..+. ++.+.++|+|++.+|...+ .+.+.+.++.+++. ++-+.+ -+.|.
T Consensus 227 ~~I~~DLK~-~Di~~~v--v~~~a~aGAD~vTVH~ea~---------------~~ti~~ai~~akk~-GikvgVD~lnp~ 287 (391)
T PRK13307 227 AFIVADLKT-LDTGNLE--ARMAADATADAVVISGLAP---------------ISTIEKAIHEAQKT-GIYSILDMLNVE 287 (391)
T ss_pred CeEEEEecc-cChhhHH--HHHHHhcCCCEEEEeccCC---------------HHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 689999985 5777665 6667778999999986432 23566777777765 455555 44542
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
+..+.++.+ ..++|.|.++-.+ +. ++ .+.+++.++++++...+++|...
T Consensus 288 --tp~e~i~~l-~~~vD~Vllht~v------dp----------------~~------~~~~~~kI~~ikk~~~~~~I~Vd 336 (391)
T PRK13307 288 --DPVKLLESL-KVKPDVVELHRGI------DE----------------EG------TEHAWGNIKEIKKAGGKILVAVA 336 (391)
T ss_pred --CHHHHHHHh-hCCCCEEEEcccc------CC----------------Cc------ccchHHHHHHHHHhCCCCcEEEE
Confidence 445556655 6789998874211 10 10 12246677788776557899999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
|||. .+++.+++.+||+.+-+||++... .+ ..+..+.+.+.|
T Consensus 337 GGI~-~eti~~l~~aGADivVVGsaIf~a-~D-p~~aak~l~~~i 378 (391)
T PRK13307 337 GGVR-VENVEEALKAGADILVVGRAITKS-KD-VRRAAEDFLNKL 378 (391)
T ss_pred CCcC-HHHHHHHHHcCCCEEEEeHHHhCC-CC-HHHHHHHHHHhh
Confidence 9996 999999999999999999998743 33 333344444444
No 317
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.44 E-value=0.0096 Score=61.68 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=105.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|+=+-+|. .+++.|.+ .+.++|+|.|.+|.- |. ..+.++++.+|+. ++-..+-+.|+
T Consensus 60 ~~~DvHLMv-~~P~~~i~---~~~~aGad~it~H~Ea~~----------------~~~~~~i~~Ik~~-G~kaGlalnP~ 118 (229)
T PRK09722 60 KPLDVHLMV-TDPQDYID---QLADAGADFITLHPETIN----------------GQAFRLIDEIRRA-GMKVGLVLNPE 118 (229)
T ss_pred CCeEEEEEe-cCHHHHHH---HHHHcCCCEEEECccCCc----------------chHHHHHHHHHHc-CCCEEEEeCCC
Confidence 677788886 57888765 444569999999863 21 1234667777765 56667778886
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC----CCc
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP----NFP 718 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~----~ip 718 (842)
+.+..+...+.. +|.|.+ .+...|++|..-.|.+++-|+++++..+ ++.
T Consensus 119 -T~~~~l~~~l~~--vD~VLv------------------------MsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~ 171 (229)
T PRK09722 119 -TPVESIKYYIHL--LDKITV------------------------MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYL 171 (229)
T ss_pred -CCHHHHHHHHHh--cCEEEE------------------------EEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeE
Confidence 444444444443 677777 1234678888889999999999887542 366
Q ss_pred EEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc-CchhHHHHHHHHHHHH
Q psy16199 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ-DFTVVDDYITGLQTLL 767 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~-gp~~~~~i~~~l~~~m 767 (842)
|-.-|||. .+.+.++.++||+.+-+||+.++. ... ..+..+.|+..+
T Consensus 172 IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l~~~~ 219 (229)
T PRK09722 172 IEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIMTAQI 219 (229)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHHHHHH
Confidence 99999994 889999999999999999764433 233 344444444433
No 318
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.44 E-value=0.0026 Score=66.31 Aligned_cols=136 Identities=13% Similarity=0.011 Sum_probs=90.2
Q ss_pred EEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHH-HhhC----C----ccEEE
Q psy16199 568 ASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-RSSV----K----IPFFV 637 (842)
Q Consensus 568 ~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v-~~~~----~----~Pv~v 637 (842)
+++.+| .+.++..++. +.|||-+-+|.. .-.+|+.+.++++.. .+.+ + -.|.+
T Consensus 76 v~vGGGIrs~e~~~~~l----~~Ga~kvvigt~-------------a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~ 138 (232)
T PRK13586 76 IQVGGGIRDIEKAKRLL----SLDVNALVFSTI-------------VFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLI 138 (232)
T ss_pred EEEeCCcCCHHHHHHHH----HCCCCEEEECch-------------hhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEc
Confidence 345444 3445554433 359999988531 126889988888777 2221 1 11221
Q ss_pred Eec-CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC
Q psy16199 638 KLT-PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 638 Kl~-p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ 716 (842)
+-- ..-.++.++++.+++.|+..|++++- + .-|-++|+. +++++.+++. +
T Consensus 139 ~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI-------~---------------~dGt~~G~d-----~el~~~~~~~-~- 189 (232)
T PRK13586 139 RGWKEKSMEVIDGIKKVNELELLGIIFTYI-------S---------------NEGTTKGID-----YNVKDYARLI-R- 189 (232)
T ss_pred cCCeeCCCCHHHHHHHHHhcCCCEEEEecc-------c---------------ccccCcCcC-----HHHHHHHHhC-C-
Confidence 110 01126789999999999999998541 1 123345543 5667777665 3
Q ss_pred CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 717 FPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
.|+|++|||.+.+|+.+...+|+++|.+++|++
T Consensus 190 ~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 190 GLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEehhhh
Confidence 459999999999999999999999999999987
No 319
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.42 E-value=0.0004 Score=72.48 Aligned_cols=92 Identities=28% Similarity=0.358 Sum_probs=73.6
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
..++.++|+.+.+.|++.+.+.. ++ +-..| ++..++.++++++.+ .+||...
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivD---------Ld---------------aa~~g---~~~n~~~i~~i~~~~-~~~i~vg 79 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVD---------LD---------------AAKEG---RGSNLELIKEIAKET-GIPIQVG 79 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEE---------HH---------------HHCCT---HHHHHHHHHHHHHHS-SSEEEEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEEE---------cc---------------CcccC---chhHHHHHHHHHhcC-CccEEEe
Confidence 45889999999999999999943 21 00112 456689999999998 5999999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
|||++.+|+.+++.+||+-|-++|..+ ++|.+++++.+..
T Consensus 80 GGIrs~ed~~~ll~~Ga~~Vvigt~~~-~~~~~l~~~~~~~ 119 (229)
T PF00977_consen 80 GGIRSIEDAERLLDAGADRVVIGTEAL-EDPELLEELAERY 119 (229)
T ss_dssp SSE-SHHHHHHHHHTT-SEEEESHHHH-HCCHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHhCCCEEEeChHHh-hchhHHHHHHHHc
Confidence 999999999999999999999999999 5699988886654
No 320
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.41 E-value=0.0082 Score=65.99 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=106.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~ 642 (842)
.|+.+++. +.+++++.+.++.+.+.|+++|.+|++. +++...+.++++++.+ ++++.++....
T Consensus 124 ~~~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~---------------~~~~d~~~v~~lr~~~g~~~l~vD~n~~ 187 (316)
T cd03319 124 LETDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGG---------------DLEDDIERIRAIREAAPDARLRVDANQG 187 (316)
T ss_pred ceeEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCC---------------ChhhHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 56667764 4578888888888877899999999742 2345568888888876 47888888665
Q ss_pred hh--cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEE
Q psy16199 643 IT--NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPIL 720 (842)
Q Consensus 643 ~~--~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi 720 (842)
++ +..++++.+++.++..|-= | +.+..++.++++++.. ++||+
T Consensus 188 ~~~~~A~~~~~~l~~~~l~~iEe-----------------P-----------------~~~~d~~~~~~L~~~~-~ipIa 232 (316)
T cd03319 188 WTPEEAVELLRELAELGVELIEQ-----------------P-----------------VPAGDDDGLAYLRDKS-PLPIM 232 (316)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEC-----------------C-----------------CCCCCHHHHHHHHhcC-CCCEE
Confidence 43 6788899999988776621 1 1122366778888887 69999
Q ss_pred EecCcCCHHHHHHHHH-hCCCEEEEehhhhccCchhHHHH
Q psy16199 721 GIGGIDSADVALQFIQ-AGAHAVQICSAVQNQDFTVVDDY 759 (842)
Q Consensus 721 ~~GGI~t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~i 759 (842)
+.+.+.+.+++.++++ .+++.||+-...+ .|..-..++
T Consensus 233 ~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~-GGi~~~~~~ 271 (316)
T cd03319 233 ADESCFSAADAARLAGGGAYDGINIKLMKT-GGLTEALRI 271 (316)
T ss_pred EeCCCCCHHHHHHHHhcCCCCEEEEecccc-CCHHHHHHH
Confidence 9999999999999999 5699999876665 344444444
No 321
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.41 E-value=0.00053 Score=77.64 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=56.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc--------------------------c------------------
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--------------------------N------------------ 184 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~--------------------------~------------------ 184 (842)
+|+|||||++|+-+|..+++.|.+ |+|++|.+.. .
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~-V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGAR-VLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 389999999999999999999975 9999987521 0
Q ss_pred ---------------------ccCCHH-------HHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeec
Q psy16199 185 ---------------------IRAVPE-------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE 236 (842)
Q Consensus 185 ---------------------~~~~~~-------~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~ 236 (842)
+|..+. ....+.+.||++++++.|+.+...++++..|.+.+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~----------- 149 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKN----------- 149 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETT-----------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccC-----------
Confidence 000000 12335567999999999999976566666666521
Q ss_pred cCCceEEEECCEEEEccccC
Q psy16199 237 DEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 237 ~~g~~~~i~~D~Vi~a~G~~ 256 (842)
..++.||.||+|+|-.
T Consensus 150 ----~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 150 ----GGEYEADAVILATGGK 165 (409)
T ss_dssp ----TEEEEESEEEE----S
T ss_pred ----cccccCCEEEEecCCC
Confidence 1379999999999976
No 322
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.41 E-value=0.0013 Score=68.85 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=72.6
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.+.+.. ++. . ..| .+..++.++++++.+ ++||...|
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~d---------l~~-----------~----~~g---~~~~~~~i~~i~~~~-~~pi~~gg 79 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVD---------LDG-----------A----KEG---GPVNLPVIKKIVRET-GVPVQVGG 79 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEe---------CCc-----------c----ccC---CCCcHHHHHHHHHhc-CCCEEEeC
Confidence 4789999999999999999942 221 0 011 223378899999987 69999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||.+.+|+.+++.+||+.|.+++.++. .|..+.++.+.+
T Consensus 80 GI~~~ed~~~~~~~Ga~~vvlgs~~l~-d~~~~~~~~~~~ 118 (230)
T TIGR00007 80 GIRSLEDVEKLLDLGVDRVIIGTAAVE-NPDLVKELLKEY 118 (230)
T ss_pred CcCCHHHHHHHHHcCCCEEEEChHHhh-CHHHHHHHHHHh
Confidence 999999999999999999999999994 577777776655
No 323
>PLN02661 Putative thiazole synthesis
Probab=97.41 E-value=0.002 Score=70.70 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=98.3
Q ss_pred cEEEEcCChhHHHHHHHHHHc-CCcEEEEEEeecCccc---------------------------c--C--------CHH
Q psy16199 149 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNI---------------------------R--A--------VPE 190 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~-G~~~Vtlv~r~~~~~~---------------------------~--~--------~~~ 190 (842)
.|+|||+|..|+-+|..|++. |. +|+++++.....- + . ...
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 399999999999999999976 65 5999997642100 0 0 000
Q ss_pred -----HHHHHH-hcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhH-H
Q psy16199 191 -----EVQLAW-EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV-L 263 (842)
Q Consensus 191 -----~~~~~~-~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l-~ 263 (842)
..+.+. +.|++++.++.+.++..+++++.++.+.......++... ...+...+.++.||+|||...+.... .
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~-s~~dp~~I~AkaVVlATGh~g~~ga~~~ 251 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQ-SCMDPNVMEAKVVVSSCGHDGPFGATGV 251 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCC-CccceeEEECCEEEEcCCCCCcchhhhh
Confidence 011122 358899888888888766778888776432110011000 00123579999999999966322111 1
Q ss_pred hhcC--Ccc----------cCCCCCeeeCCCCCCCCCCCeEEeccCCC----Cc---hhHHHHHHHHHHHHHHHHHHHH
Q psy16199 264 EAIK--PVK----------LDKYGYPEVNYTTMATSVPGVFCGGDTAN----LS---DTTVESVNDGKTAAWHIHKYIQ 323 (842)
Q Consensus 264 ~~l~--gl~----------~~~~G~i~vd~~~~~Ts~~gVfa~GD~~~----~~---~~~~~A~~~G~~aA~~I~~~L~ 323 (842)
+.+. |+. .+..-...|+ .+.+ =+||+|++|=.+. .| +..-.=+-.|++||..|.+.|.
T Consensus 252 ~~~~~~g~~~~~pg~~~~~~~~~e~~~v~-~t~e-v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 252 KRLKSIGMIDSVPGMKALDMNAAEDAIVR-LTRE-VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred hcccccCCccCCCCccccchhhHHHHHHh-ccCc-ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 1110 110 0000011122 2223 3899999996542 12 2223345789999999998885
No 324
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.41 E-value=0.0049 Score=62.69 Aligned_cols=48 Identities=33% Similarity=0.561 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 703 GLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 703 al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.++.++++.+..+++||++.||| +.+++.+++.+||++|.++++++..
T Consensus 139 g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 139 GVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred CHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 47778888777656999999999 6999999999999999999999943
No 325
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.39 E-value=0.00079 Score=78.32 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=76.0
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
+.|+.++|+...+.|||-|++.+ ++. -.+++..+...+++|+++++.+ .+|+...
T Consensus 266 ~gdPve~a~~y~~~Gadel~~~D---------i~~---------------~~~~~~~~~~~~~~i~~i~~~~-~ip~~vG 320 (538)
T PLN02617 266 LGKPVELAGQYYKDGADEVAFLN---------ITG---------------FRDFPLGDLPMLEVLRRASENV-FVPLTVG 320 (538)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEE---------CCC---------------CcCCcccchhHHHHHHHHHhhC-CCCEEEc
Confidence 56899999999999999999843 221 0112222445689999999998 7999999
Q ss_pred cCcCCH-----------HHHHHHHHhCCCEEEEehhhhcc-----------CchhHHHHHHHH
Q psy16199 723 GGIDSA-----------DVALQFIQAGAHAVQICSAVQNQ-----------DFTVVDDYITGL 763 (842)
Q Consensus 723 GGI~t~-----------~da~~~l~~GA~~Vqv~ta~l~~-----------gp~~~~~i~~~l 763 (842)
|||+|- +++.++|.+||+-|.|+|+++.+ +|.+++++.+..
T Consensus 321 GGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~f 383 (538)
T PLN02617 321 GGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVY 383 (538)
T ss_pred CCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHc
Confidence 999998 66899999999999999999965 367777776554
No 326
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.37 E-value=0.0011 Score=69.38 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=72.3
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
..++.++|+...+.|++.+.+. |++. ...| ++...+.++++++.+ +||-..
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhiv---------DLd~---------------a~~g---~~~n~~~i~~i~~~~--~~v~vG 79 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVV---------DLSK---------------AIEN---SVENLPVLEKLSEFA--EHIQIG 79 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE---------ECCC---------------cccC---CcchHHHHHHHHhhc--CcEEEe
Confidence 3588999999999999999993 3331 1112 445588999999986 699999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDY 759 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i 759 (842)
|||+|.+|+.+++.+||+-|-++|..+ ++|.+++++
T Consensus 80 GGIrs~e~~~~~l~~Ga~rvvigT~a~-~~p~~l~~~ 115 (241)
T PRK14114 80 GGIRSLDYAEKLRKLGYRRQIVSSKVL-EDPSFLKFL 115 (241)
T ss_pred cCCCCHHHHHHHHHCCCCEEEECchhh-CCHHHHHHH
Confidence 999999999999999999999999999 559998888
No 327
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.36 E-value=0.0024 Score=66.86 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe---cCChhc---HHHHHHH
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---TPNITN---ITDIAKA 652 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---~p~~~~---~~~~a~~ 652 (842)
..++. .+.+.|||.|++=++.. .-...+.+.+.+-+++|++..+-++.+|+ ++.+++ +...++.
T Consensus 86 ~~Ea~-~Ai~~GAdEiD~Vinig---------~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~ 155 (257)
T PRK05283 86 LAETR-AAIAYGADEVDVVFPYR---------ALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEI 155 (257)
T ss_pred HHHHH-HHHHcCCCEEeeeccHH---------HHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHH
Confidence 44444 34446999999854322 22235778888889999887643467776 444542 5678889
Q ss_pred HHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC---CCCcEEEecCcCCHH
Q psy16199 653 AYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF---PNFPILGIGGIDSAD 729 (842)
Q Consensus 653 ~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~---~~ipIi~~GGI~t~~ 729 (842)
+.++|+|+|--+. | +++....+...+.+.+..+.. +++-|=++|||+|.+
T Consensus 156 a~~aGADFVKTST--------------------------G-f~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~ 208 (257)
T PRK05283 156 AIKAGADFIKTST--------------------------G-KVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAE 208 (257)
T ss_pred HHHhCCCEEEcCC--------------------------C-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHH
Confidence 9999999997632 1 111112344455554443321 247899999999999
Q ss_pred HHHHHHHhCCCE
Q psy16199 730 VALQFIQAGAHA 741 (842)
Q Consensus 730 da~~~l~~GA~~ 741 (842)
++.+++.+|.+.
T Consensus 209 ~A~~~i~ag~~~ 220 (257)
T PRK05283 209 DAAQYLALADEI 220 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 328
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.35 E-value=0.0057 Score=63.33 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.|..+..++.+++.+ ++||++.||| +.+++.+.+.+||++|-+-++++..
T Consensus 149 ~p~gl~~l~~~~~~~-~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 149 HPRNLSLAEWWAEMI-EIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred CCCChHHHHHHHHhC-CCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 456677787788877 7999999999 9999999999999999999999943
No 329
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.34 E-value=0.001 Score=68.90 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=84.8
Q ss_pred EEeccC-CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEE-----ecC
Q psy16199 568 ASIMCT-YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVK-----LTP 641 (842)
Q Consensus 568 ~si~~g-~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vK-----l~p 641 (842)
+++.+| .+.++..++...+. +||-+-+|. .. .++|+.+.++.. .+ -+=+| ...
T Consensus 80 v~vgGGirs~e~~~~~~~~l~--~a~rvvigT--~a-----------~~~p~~l~~~~~----vv--slD~~~g~v~~~g 138 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTLE--FASRVVVAT--ET-----------LDITELLRECYT----VV--SLDFKEKFLDASG 138 (221)
T ss_pred EEEcCccCCHHHHHHHHhhhc--cceEEeecC--hh-----------hCCHHHHHHhhh----EE--EEEeECCcccccc
Confidence 344434 35666555543332 478876642 21 267777776641 11 01111 111
Q ss_pred ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 642 NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
-.....++.+.+.+.|+ ++++++ ++ .-|-.+|+ .+++++++++.. ++|||+
T Consensus 139 ~~~~~~~~~~~~~~~g~-~ii~td---------I~-------------~dGt~~G~-----d~eli~~i~~~~-~~pvia 189 (221)
T TIGR00734 139 LFESLEEVRDFLNSFDY-GLIVLD---------IH-------------SVGTMKGP-----NLELLTKTLELS-EHPVML 189 (221)
T ss_pred ccccHHHHHHHHHhcCC-EEEEEE---------CC-------------ccccCCCC-----CHHHHHHHHhhC-CCCEEE
Confidence 12356677788888998 777732 11 11223332 288899999987 799999
Q ss_pred ecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 722 IGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 722 ~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
+|||.|.+|+.++..+||++|.++++++.
T Consensus 190 ~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 190 GGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred eCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 99999999999988899999999999873
No 330
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.32 E-value=0.0012 Score=68.83 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=68.5
Q ss_pred cH-HHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 645 NI-TDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 645 ~~-~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
+. .++|+...+.|++.|.+.. + | .+ -.+.++++.+.+ ++||...|
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVD---------L--------------------g---~~-n~~~i~~i~~~~-~~~v~vGG 83 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIM---------L--------------------G---PN-NDDAAKEALHAY-PGGLQVGG 83 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEE---------C--------------------C---CC-cHHHHHHHHHhC-CCCEEEeC
Confidence 44 8999999999999999942 1 1 22 378899999987 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccC---chhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQD---FTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~g---p~~~~~i~~~l 763 (842)
||++ +++.+++.+||+-|.++|+++.+. |.++.++.+..
T Consensus 84 GIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 84 GIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred CcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHh
Confidence 9998 999999999999999999999541 56666665544
No 331
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.31 E-value=0.005 Score=64.15 Aligned_cols=131 Identities=13% Similarity=0.121 Sum_probs=86.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe----
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---- 639 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---- 639 (842)
.|++++=.. .+.++..++.+ .|+|.+-++- +.. +|+.+.++.+..- + +++=+
T Consensus 74 ~pv~~gGGI-rs~edv~~l~~----~G~~~vivGt-------------aa~-~~~~l~~~~~~~g---~--ivvslD~~~ 129 (228)
T PRK04128 74 LKVQVGGGL-RTYESIKDAYE----IGVENVIIGT-------------KAF-DLEFLEKVTSEFE---G--ITVSLDVKG 129 (228)
T ss_pred CCEEEcCCC-CCHHHHHHHHH----CCCCEEEECc-------------hhc-CHHHHHHHHHHcC---C--EEEEEEccC
Confidence 567765321 46677666543 4999988851 122 6888888877552 1 22221
Q ss_pred ----cCCh-----hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHH
Q psy16199 640 ----TPNI-----TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710 (842)
Q Consensus 640 ----~p~~-----~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i 710 (842)
..++ .+..++++.+++. +..|++++- + .-|-++|.. ++
T Consensus 130 g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i-------~---------------~dGt~~G~d----------~l 176 (228)
T PRK04128 130 GRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSI-------E---------------RDGTLTGIE----------EI 176 (228)
T ss_pred CeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEec-------c---------------chhcccCHH----------HH
Confidence 0111 1467888888888 888888541 1 123345522 33
Q ss_pred HhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 711 AKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 711 ~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.+.++++|||++|||.+.+|+.+...+|+++|.+++++...
T Consensus 177 ~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 177 ERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred HHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 33334799999999999999999999999999999999854
No 332
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.29 E-value=0.0011 Score=75.39 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=62.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCc-EEEEEEeecCccc---cCCHHH-------------HHHHHhcCcEEecCCCceE
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI---RAVPEE-------------VQLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~-~Vtlv~r~~~~~~---~~~~~~-------------~~~~~~~gV~i~~~~~v~~ 210 (842)
.+|||||||+.|+.+|..|.+.|.. +|+++.+.+.... +..... .....+.+|+++.++.++.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~ 83 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKT 83 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEE
Confidence 4599999999999999999998753 5999987643211 111111 1223457899999988888
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+...+.. |.+.+ | .++.+|.+|+|||.+|
T Consensus 84 id~~~~~---v~~~~-------------g--~~~~yd~LViATGs~~ 112 (396)
T PRK09754 84 LGRDTRE---LVLTN-------------G--ESWHWDQLFIATGAAA 112 (396)
T ss_pred EECCCCE---EEECC-------------C--CEEEcCEEEEccCCCC
Confidence 8633221 23321 2 2689999999999984
No 333
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.26 E-value=0.013 Score=59.94 Aligned_cols=63 Identities=27% Similarity=0.551 Sum_probs=50.1
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC--chhHHHHHHHHH
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD--FTVVDDYITGLQ 764 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g--p~~~~~i~~~l~ 764 (842)
.|..+..++.+++.. .+|+++.||| +.+.+.+.+.+||+.|-|-|+++... ....+++++.++
T Consensus 143 ~~~G~~~l~~~~~~~-~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~ 207 (211)
T COG0352 143 PPLGLEGLREIRELV-NIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE 207 (211)
T ss_pred CccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHH
Confidence 566788888888876 5999999998 89999999999999999999999431 334445544444
No 334
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.25 E-value=0.018 Score=59.46 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=104.7
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vKl~p~ 642 (842)
.|+=+-+|. .+++.|.+ .+.++|||.|.+|.=+. ..+.++++.+++.- .+-..+-+.|+
T Consensus 69 ~~~DvHLMv-~~P~~~i~---~~~~aGad~It~H~Ea~----------------~~~~~~l~~Ik~~g~~~kaGlalnP~ 128 (228)
T PRK08091 69 CFKDVHLMV-RDQFEVAK---ACVAAGADIVTLQVEQT----------------HDLALTIEWLAKQKTTVLIGLCLCPE 128 (228)
T ss_pred CCEEEEecc-CCHHHHHH---HHHHhCCCEEEEcccCc----------------ccHHHHHHHHHHCCCCceEEEEECCC
Confidence 567777875 57888765 44557999999986321 12456778888753 23667777775
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC----CCc
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP----NFP 718 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~----~ip 718 (842)
+.+..+...+.. +|.|.+ .+...|++|..-.|.+++-|+++++..+ ++.
T Consensus 129 -Tp~~~i~~~l~~--vD~VLi------------------------MtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~ 181 (228)
T PRK08091 129 -TPISLLEPYLDQ--IDLIQI------------------------LTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKL 181 (228)
T ss_pred -CCHHHHHHHHhh--cCEEEE------------------------EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCce
Confidence 344444444443 788877 1234677788888888999988876532 466
Q ss_pred EEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHH
Q psy16199 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQT 765 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~ 765 (842)
|-.-||| +.+.+.++.++|||.+-+||++..+ +. ..+..+.|+.
T Consensus 182 IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~-~d-~~~~i~~l~~ 225 (228)
T PRK08091 182 ISIDGSM-TLELASYLKQHQIDWVVSGSALFSQ-GE-LKTTLKEWKS 225 (228)
T ss_pred EEEECCC-CHHHHHHHHHCCCCEEEEChhhhCC-CC-HHHHHHHHHH
Confidence 9999998 5889999999999999999997743 34 4444455543
No 335
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.23 E-value=0.014 Score=60.95 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCC
Q psy16199 578 DWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGK 657 (842)
Q Consensus 578 ~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G 657 (842)
+..++|+..+++||++|-++. -. .-+ +.+. +.++.+++.+++||+.|=- +.+..++.++.. +|
T Consensus 62 d~~~~A~~y~~~GA~aISVlT-----e~-~~F----~Gs~----~~l~~v~~~v~~PvL~KDF--Iid~~QI~ea~~-~G 124 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLT-----DQ-SYF----GGSL----EDLKSVSSELKIPVLRKDF--ILDEIQIREARA-FG 124 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEc-----CC-CcC----CCCH----HHHHHHHHhcCCCEEeccc--cCCHHHHHHHHH-cC
Confidence 345666777888999997752 11 112 2333 5566677778999999842 123344433333 66
Q ss_pred CCEEEEecCCCccccCC--CC---C-CCCCcccCCCccc------cC----CCCCCcc--ccchHHHHHHHHhhCC-CCc
Q psy16199 658 ADGVSAINTVSGLMSLS--AD---G-NPWPAVGTKKLTT------YG----GVSGNAT--RPMGLKAVSSIAKMFP-NFP 718 (842)
Q Consensus 658 ~d~i~v~nt~~~~~~~~--~~---~-~~~p~~~~~~~~~------~g----G~sG~~~--~p~al~~v~~i~~~~~-~ip 718 (842)
||+|.++-.+-+...+. ++ . .-.+.+..|.... .| |...+.+ ..+.+....+++...| +..
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~ 204 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIV 204 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcE
Confidence 66666654332210000 00 0 0000000000000 00 1122222 2344666677777776 477
Q ss_pred EEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchh
Q psy16199 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV 755 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~ 755 (842)
+|+-+||.|++|+.++..+ +++|-||+++|.. ++.
T Consensus 205 ~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~-~d~ 239 (247)
T PRK13957 205 KVGESGIESRSDLDKFRKL-VDAALIGTYFMEK-KDI 239 (247)
T ss_pred EEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC-CCH
Confidence 8999999999999998776 9999999999965 443
No 336
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.20 E-value=0.0021 Score=67.30 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=72.4
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.+.+.. ++. . .| ++..++.++++.+.+ .+|+...|
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~D---------Ld~-----------~-~~-------~~~n~~~i~~i~~~~-~~~v~vgG 85 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIAD---------LDA-----------I-MG-------RGDNDEAIRELAAAW-PLGLWVDG 85 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEe---------Ccc-----------c-cC-------CCccHHHHHHHHHhC-CCCEEEec
Confidence 4789999999999999999943 221 0 01 344588999999987 69999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||++.+|+.+++.+||+-|-++|..+. . .++.++.+.+
T Consensus 86 Gir~~edv~~~l~~Ga~~viigt~~~~-~-~~~~~~~~~~ 123 (233)
T cd04723 86 GIRSLENAQEWLKRGASRVIVGTETLP-S-DDDEDRLAAL 123 (233)
T ss_pred CcCCHHHHHHHHHcCCCeEEEcceecc-c-hHHHHHHHhc
Confidence 999999999999999999999999984 4 7777766655
No 337
>PRK14057 epimerase; Provisional
Probab=97.20 E-value=0.013 Score=61.22 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=105.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCC--------ccE
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVK--------IPF 635 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~--------~Pv 635 (842)
.|+=+-+|. .+++.|.+ .+.++|+|.|.+|.-.. ..+.+.++++|+.-- +-.
T Consensus 76 ~p~DvHLMV-~~P~~~i~---~~~~aGad~It~H~Ea~----------------~~~~~~l~~Ir~~G~k~~~~~~~~ka 135 (254)
T PRK14057 76 FIKDVHLMV-ADQWTAAQ---ACVKAGAHCITLQAEGD----------------IHLHHTLSWLGQQTVPVIGGEMPVIR 135 (254)
T ss_pred CCeeEEeee-CCHHHHHH---HHHHhCCCEEEEeeccc----------------cCHHHHHHHHHHcCCCccccccccee
Confidence 455566775 47887765 44557999999986421 123467778877521 236
Q ss_pred EEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 636 FVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 636 ~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
.+-+.|+ +.+..+...+.. +|.|.+ .+...|++|..-.|.+++-|+++++..+
T Consensus 136 GlAlnP~-Tp~e~i~~~l~~--vD~VLv------------------------MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~ 188 (254)
T PRK14057 136 GISLCPA-TPLDVIIPILSD--VEVIQL------------------------LAVNPGYGSKMRSSDLHERVAQLLCLLG 188 (254)
T ss_pred EEEECCC-CCHHHHHHHHHh--CCEEEE------------------------EEECCCCCchhccHHHHHHHHHHHHHHH
Confidence 6777775 344444444443 788877 1235678888888999999988877532
Q ss_pred ----CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHHH
Q psy16199 716 ----NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLY 768 (842)
Q Consensus 716 ----~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~ 768 (842)
++.|-.-||| +.+.+.++.++||+.+-+||++.. .+. ..+..+.|+..+.
T Consensus 189 ~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~-~~d-~~~~i~~l~~~~~ 242 (254)
T PRK14057 189 DKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFR-DDR-LVENTRSWRAMFK 242 (254)
T ss_pred hcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhC-CCC-HHHHHHHHHHHHh
Confidence 3679999998 788999999999999999999874 344 4555555555443
No 338
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.20 E-value=0.0085 Score=63.04 Aligned_cols=158 Identities=23% Similarity=0.200 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHC
Q psy16199 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEG 656 (842)
Q Consensus 577 e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~ 656 (842)
.+..++++..+++||++|-+..--. -+..-.+.++.+++.+++|+..|=- +-+..++ ..+..+
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe~~--------------~F~Gs~~dL~~v~~~~~~PvL~KDF--Iid~~QI-~eA~~~ 130 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTEPK--------------FFGGSLEDLRAVRKAVDLPVLRKDF--IIDPYQI-YEARAA 130 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE--SC--------------CCHHHHHHHHHHHHHSSS-EEEES-----SHHHH-HHHHHT
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCC--------------CCCCCHHHHHHHHHHhCCCcccccC--CCCHHHH-HHHHHc
Confidence 3566677777788999999963211 1234457788888889999999821 1122222 223345
Q ss_pred CCCEEEEecCCCcccc----------CCCCCCCCCcccCCCcc------ccC----CCCCCcc--ccchHHHHHHHHhhC
Q psy16199 657 KADGVSAINTVSGLMS----------LSADGNPWPAVGTKKLT------TYG----GVSGNAT--RPMGLKAVSSIAKMF 714 (842)
Q Consensus 657 G~d~i~v~nt~~~~~~----------~~~~~~~~p~~~~~~~~------~~g----G~sG~~~--~p~al~~v~~i~~~~ 714 (842)
|||+|.++-.+-+... +..+ +.+..|... ..| |.+.+.+ ..+.+....+++..+
T Consensus 131 GADaVLLI~~~L~~~~l~~l~~~a~~lGle----~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~i 206 (254)
T PF00218_consen 131 GADAVLLIAAILSDDQLEELLELAHSLGLE----ALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLI 206 (254)
T ss_dssp T-SEEEEEGGGSGHHHHHHHHHHHHHTT-E----EEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHS
T ss_pred CCCEeehhHHhCCHHHHHHHHHHHHHcCCC----eEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhC
Confidence 5555555433211000 0000 000000000 000 0111111 233345556666666
Q ss_pred C-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhH
Q psy16199 715 P-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVV 756 (842)
Q Consensus 715 ~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~ 756 (842)
| ++.+|+-+||.+++|+..+..+|+++|-||+++|.. +..-
T Consensus 207 p~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~-~d~~ 248 (254)
T PF00218_consen 207 PKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS-PDPG 248 (254)
T ss_dssp HTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS-SSHH
T ss_pred ccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC-CCHH
Confidence 4 488999999999999999999999999999999954 4433
No 339
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.17 E-value=0.0022 Score=67.28 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=71.1
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+...+.|++.+.+. |++ | | .+...+.+++|++ + ++||-..|
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvV---------DLd----------------g--g---~~~n~~~i~~i~~-~-~~~vqvGG 90 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVI---------MLG----------------A--D---DASLAAALEALRA-Y-PGGLQVGG 90 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEE---------ECC----------------C--C---CcccHHHHHHHHh-C-CCCEEEeC
Confidence 578999999999999999993 222 1 1 2333788999988 7 59999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhcc---CchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQ---DFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~---gp~~~~~i~~~l 763 (842)
||++ +++.+++.+||+-|.++|.++.+ .|.+++++.+..
T Consensus 91 GIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 91 GVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLV 132 (262)
T ss_pred CccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHh
Confidence 9997 99999999999999999999954 278887776654
No 340
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.16 E-value=0.0016 Score=75.18 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=64.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-cEEEEEEeecCcc-----cc-------CCHHH-----HHHHHhcCcEEecCCCceE
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTN-----IR-------AVPEE-----VQLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~-~~Vtlv~r~~~~~-----~~-------~~~~~-----~~~~~~~gV~i~~~~~v~~ 210 (842)
+|||||||+.|+.+|..|.+.+. -+|+|+++++... ++ ..+.+ .+.+.+.|++++.++.++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 59999999999999999998763 2599999886321 11 01111 1235567999999989998
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+..++.. |++.+.. +++..++.+|.+|+|+|.+|
T Consensus 82 id~~~~~---v~~~~~~----------~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 82 VDAKNKT---ITVKNLK----------TGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred EECCCCE---EEEEECC----------CCCEEEecCCEEEECCCCCC
Confidence 8743332 3333210 12333455999999999984
No 341
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.13 E-value=0.0096 Score=61.00 Aligned_cols=125 Identities=21% Similarity=0.394 Sum_probs=79.9
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEE--EEecCChhcHHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF--VKLTPNITNITDIAK 651 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~--vKl~p~~~~~~~~a~ 651 (842)
.+.+++.+++.. .++|+|.|+-. .++ +.++.+++..+.+++ +.++.+ ...+ +.
T Consensus 60 ~~~~~i~~ia~~---~~~d~Vqlhg~---------------e~~----~~~~~l~~~~~~~~i~~i~~~~~--~~~~-~~ 114 (203)
T cd00405 60 EDLEEILEIAEE---LGLDVVQLHGD---------------ESP----EYCAQLRARLGLPVIKAIRVKDE--EDLE-KA 114 (203)
T ss_pred CCHHHHHHHHHh---cCCCEEEECCC---------------CCH----HHHHHHHhhcCCcEEEEEecCCh--hhHH-Hh
Confidence 356666666554 58999999521 122 345566665667777 444432 1112 12
Q ss_pred HHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHH
Q psy16199 652 AAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVA 731 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da 731 (842)
.....++|++.+ .|.. ....|| +| .+..++.+++++ . ++|+++.||| +++++
T Consensus 115 ~~~~~~aD~il~-dt~~-------------------~~~~Gg-~g---~~~~~~~l~~~~--~-~~PvilaGGI-~~~Nv 166 (203)
T cd00405 115 AAYAGEVDAILL-DSKS-------------------GGGGGG-TG---KTFDWSLLRGLA--S-RKPVILAGGL-TPDNV 166 (203)
T ss_pred hhccccCCEEEE-cCCC-------------------CCCCCC-Cc---ceEChHHhhccc--c-CCCEEEECCC-ChHHH
Confidence 445678999865 2100 011122 22 444577777665 3 6899999999 99999
Q ss_pred HHHHHhC-CCEEEEehhhhcc
Q psy16199 732 LQFIQAG-AHAVQICSAVQNQ 751 (842)
Q Consensus 732 ~~~l~~G-A~~Vqv~ta~l~~ 751 (842)
.+++.+| +++|.|.|++...
T Consensus 167 ~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 167 AEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred HHHHHhcCCCEEEcCCcccCC
Confidence 9999998 9999999999954
No 342
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.09 E-value=0.0093 Score=65.39 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=84.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh---------CCcc
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS---------VKIP 634 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~---------~~~P 634 (842)
.|+|.+=|..-+..+++.. +++ .|.=++ ||-. ...+...+.++.+++. -...
T Consensus 38 iPivsa~MDtVte~~mAia--ma~-~Gglgv-ih~~---------------~~~e~q~~~v~~vK~~~~~a~~d~~~~l~ 98 (352)
T PF00478_consen 38 IPIVSAPMDTVTESEMAIA--MAR-LGGLGV-IHRN---------------MSIEEQAEEVKKVKRYYPNASKDEKGRLL 98 (352)
T ss_dssp SSEEE-SSTTTSSHHHHHH--HHH-TTSEEE-EESS---------------SCHHHHHHHHHHHHTHHTTHHBHTTSCBC
T ss_pred CceEecCccccchHHHHHH--HHH-hcCCce-ecCC---------------CCHHHHHHHHhhhccccccccccccccce
Confidence 7999988754333333322 222 243333 4432 2345666777777753 2456
Q ss_pred EEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC
Q psy16199 635 FFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF 714 (842)
Q Consensus 635 v~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~ 714 (842)
|.+=+.+. ++..+.++.|.++|+|.|++--+ . |+| ...++.++.+++.+
T Consensus 99 V~aavg~~-~~~~er~~~L~~agvD~ivID~a------------------------~-g~s-----~~~~~~ik~ik~~~ 147 (352)
T PF00478_consen 99 VAAAVGTR-DDDFERAEALVEAGVDVIVIDSA------------------------H-GHS-----EHVIDMIKKIKKKF 147 (352)
T ss_dssp EEEEEESS-TCHHHHHHHHHHTT-SEEEEE-S------------------------S-TTS-----HHHHHHHHHHHHHS
T ss_pred EEEEecCC-HHHHHHHHHHHHcCCCEEEcccc------------------------C-ccH-----HHHHHHHHHHHHhC
Confidence 66666663 34577888999999999988211 1 122 23367889999999
Q ss_pred CCCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 715 PNFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 715 ~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
|++||| .|.|-|.+-+.+.+.+|||+|-||
T Consensus 148 ~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 148 PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 889998 677999999999999999999986
No 343
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.08 E-value=0.0046 Score=64.50 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
.++.++|+.+.+.|++.+.+. |++.. .| .+...+.++++.+.. -.|+-..|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhiv---------DLd~a------------~~-------~~~n~~~i~~i~~~~-~~~v~vGG 80 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVV---------DLDAA------------EG-------VGNNEMYIKEISKIG-FDWIQVGG 80 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEE---------ECCCc------------CC-------CcchHHHHHHHHhhC-CCCEEEeC
Confidence 378999999999999999994 22210 01 233468899998853 25999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||+|.+|+.+++.+||+-|-++|..+ ..|.+++++.+..
T Consensus 81 GIrs~e~~~~~l~~Ga~kvvigt~a~-~~p~~~~~~~~~~ 119 (232)
T PRK13586 81 GIRDIEKAKRLLSLDVNALVFSTIVF-TNFNLFHDIVREI 119 (232)
T ss_pred CcCCHHHHHHHHHCCCCEEEECchhh-CCHHHHHHHHHHh
Confidence 99999999999999999999999999 4598888886665
No 344
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.07 E-value=0.0077 Score=60.44 Aligned_cols=47 Identities=32% Similarity=0.619 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhh
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~ 748 (842)
.|..++.+.++++.. ++||++.||| +++++.+..++||++|-+.+++
T Consensus 134 ~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 134 PPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred cccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 567799999999988 6999999999 8999999999999999988874
No 345
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.06 E-value=0.0041 Score=71.63 Aligned_cols=96 Identities=9% Similarity=0.156 Sum_probs=64.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-cEEEEEEeecCcccc-----CC-------H-HHH----HHH-HhcCcEEecCCCce
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTNIR-----AV-------P-EEV----QLA-WEEKCEFLPFMSPV 209 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~-~~Vtlv~r~~~~~~~-----~~-------~-~~~----~~~-~~~gV~i~~~~~v~ 209 (842)
||||||||+.|+.+|..|.+.+. -+|+|+.+.+...+. .. . ..+ +.+ .+.|++++.++.|+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~ 82 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVI 82 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEE
Confidence 69999999999999999988732 249999988632111 10 0 111 222 34699999999999
Q ss_pred EEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 210 ~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+|..++.. |.+.+.. +++..++.+|.+|+|||.+|
T Consensus 83 ~Id~~~~~---v~~~~~~----------~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 83 AINDERQT---VTVLNRK----------TNEQFEESYDKLILSPGASA 117 (438)
T ss_pred EEECCCCE---EEEEECC----------CCcEEeeecCEEEECCCCCC
Confidence 99743332 4444321 12345689999999999994
No 346
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0065 Score=63.21 Aligned_cols=152 Identities=17% Similarity=0.212 Sum_probs=94.0
Q ss_pred HHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe---cC-----------C---
Q psy16199 580 LELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---TP-----------N--- 642 (842)
Q Consensus 580 ~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---~p-----------~--- 642 (842)
.++++..+++||++|-+=.--+. |..++ +.++.+++.+.+||..|= .| |
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~----------F~Gs~----e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavL 134 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKY----------FQGSF----EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVL 134 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccc----------cCCCH----HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHH
Confidence 34666667778999887321111 11233 556788888999999993 11 0
Q ss_pred -----h--hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC
Q psy16199 643 -----I--TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP 715 (842)
Q Consensus 643 -----~--~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~ 715 (842)
+ ..+.++.+.+.+.|-+.++=.++--.... .++ .+-..++...|+-.. ..+.+....++....|
T Consensus 135 LI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~r-Al~-~ga~iIGINnRdL~t-------f~vdl~~t~~la~~~p 205 (254)
T COG0134 135 LIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELER-ALK-LGAKIIGINNRDLTT-------LEVDLETTEKLAPLIP 205 (254)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHH-HHh-CCCCEEEEeCCCcch-------heecHHHHHHHHhhCC
Confidence 1 24677888888888887775443210000 000 001111111111111 2334566677777776
Q ss_pred C-CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchh
Q psy16199 716 N-FPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV 755 (842)
Q Consensus 716 ~-ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~ 755 (842)
+ .-+|.-.||.+++|+.++...||+++-||+++|.+ +..
T Consensus 206 ~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~-~~~ 245 (254)
T COG0134 206 KDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA-DDP 245 (254)
T ss_pred CCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC-CCH
Confidence 4 78999999999999999999999999999999965 444
No 347
>KOG3111|consensus
Probab=97.04 E-value=0.018 Score=56.31 Aligned_cols=173 Identities=17% Similarity=0.128 Sum_probs=102.3
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEecc----CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh-----
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLS----CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT----- 644 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~s----cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~----- 644 (842)
.+-..+.+-++++.++|||+|.+.+- .||. .+=--+++.+|+.++.|-+.-+---+.
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNi--------------T~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~ 79 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHLDVMDGHFVPNI--------------TFGPPVVESLRKHTGADPFFDVHMMVENPEQW 79 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEEeeecccccCCc--------------ccchHHHHHHHhccCCCcceeEEEeecCHHHH
Confidence 45555666666777899999999763 3432 111245677777665553333211122
Q ss_pred --------------------cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccC-CCccccCCCCCCccccch
Q psy16199 645 --------------------NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGT-KKLTTYGGVSGNATRPMG 703 (842)
Q Consensus 645 --------------------~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~-~~~~~~gG~sG~~~~p~a 703 (842)
+..++++.+.+.|...=.+.|.-.+. -+++ ...+.++. --.+-..|+.|..-.+--
T Consensus 80 V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~V--e~~~-~~~~~~D~vLvMtVePGFGGQkFme~m 156 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPV--EDLE-PLAEHVDMVLVMTVEPGFGGQKFMEDM 156 (224)
T ss_pred HHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcH--HHHH-HhhccccEEEEEEecCCCchhhhHHHH
Confidence 33455555555554443333321110 0111 00000000 012334667777767778
Q ss_pred HHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC-c-hhHHHHHHHHH
Q psy16199 704 LKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD-F-TVVDDYITGLQ 764 (842)
Q Consensus 704 l~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g-p-~~~~~i~~~l~ 764 (842)
+.-|+.+|+.+|++.|=..||+ +++.+.++.++||+++..||+++... | .+++.|++...
T Consensus 157 m~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE 218 (224)
T ss_pred HHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence 8899999999988888899998 78999999999999999999999443 2 44555544443
No 348
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.03 E-value=0.0025 Score=70.96 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=59.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc--cccCC---------------------------------------
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--NIRAV--------------------------------------- 188 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~--~~~~~--------------------------------------- 188 (842)
|+|||||..|+|+|..+++.|++ |.++...... .++..
T Consensus 2 ViVVGgG~AG~eAA~aaAr~G~~-V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 2 VIVVGGGHAGCEAALAAARMGAK-VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEESSSHHHHHHHHHHHHTT---EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 89999999999999999999986 9888433211 00000
Q ss_pred ------------HH-----HHHH-HHh-cCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEE
Q psy16199 189 ------------PE-----EVQL-AWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYI 249 (842)
Q Consensus 189 ------------~~-----~~~~-~~~-~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~V 249 (842)
+. .+.. +.+ .++.++ ...|+++..+++++.+|.+.++ ..+.+|.|
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g---------------~~~~a~~v 144 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDG---------------EEIEADAV 144 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTS---------------EEEEECEE
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCC---------------CEEecCEE
Confidence 00 1212 222 478886 5688888778888988877542 37999999
Q ss_pred EEcccc
Q psy16199 250 ISAFGS 255 (842)
Q Consensus 250 i~a~G~ 255 (842)
|+|||.
T Consensus 145 VlaTGt 150 (392)
T PF01134_consen 145 VLATGT 150 (392)
T ss_dssp EE-TTT
T ss_pred EEeccc
Confidence 999997
No 349
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.02 E-value=0.00098 Score=83.20 Aligned_cols=85 Identities=15% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc------cccCC-------HHHHHHHHhcCcEEecCCCceEEEc
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV-------PEEVQLAWEEKCEFLPFMSPVQVDV 213 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~------~~~~~-------~~~~~~~~~~gV~i~~~~~v~~v~~ 213 (842)
+++|+|||+|+.|+.+|..|++.|.+ |||+++.+.. .+|.. +.+++.+.+.||+|++++.+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 34499999999999999999999985 9999987521 12221 1244567778999988854311
Q ss_pred cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 214 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 214 ~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
.+.+.+ .....+|.||+|||..
T Consensus 382 ------dit~~~---------------l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 382 ------TATLED---------------LKAAGFWKIFVGTGAG 403 (944)
T ss_pred ------EEeHHH---------------hccccCCEEEEeCCCC
Confidence 122221 1234689999999985
No 350
>PRK07236 hypothetical protein; Provisional
Probab=96.99 E-value=0.005 Score=69.66 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=30.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.+|+|||||.+|+.+|..|.+.|.+ |+|+++.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4599999999999999999999986 99999886
No 351
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.99 E-value=0.028 Score=59.11 Aligned_cols=122 Identities=22% Similarity=0.231 Sum_probs=84.9
Q ss_pred HHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCE
Q psy16199 581 ELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADG 660 (842)
Q Consensus 581 ~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~ 660 (842)
+-|+.++++||=++-.==--|..++..| |-+=.++++ .+++|++.+++||+-|+.-+. ..=++.+.++|+|-
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~-~v~R~~~~~----~I~~Ik~~V~iPVIGi~K~~~---~~Ea~~L~eaGvDi 90 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAG-GVARMADPK----MIKEIMDAVSIPVMAKVRIGH---FVEAQILEALGVDM 90 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcC-CeeecCCHH----HHHHHHHhCCCCeEEeeehhH---HHHHHHHHHcCCCE
Confidence 3467778888877665334565554444 333335564 456777788999999887543 44478999999999
Q ss_pred EEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCC
Q psy16199 661 VSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAH 740 (842)
Q Consensus 661 i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~ 740 (842)
|..|.+. +| +-+++..+++.+ +.|+ ..+++|-+++..++.+|||
T Consensus 91 IDaT~r~--------------------------------rP-~~~~~~~iK~~~-~~l~--MAD~stleEal~a~~~Gad 134 (283)
T cd04727 91 IDESEVL--------------------------------TP-ADEEHHIDKHKF-KVPF--VCGARNLGEALRRISEGAA 134 (283)
T ss_pred EeccCCC--------------------------------Cc-HHHHHHHHHHHc-CCcE--EccCCCHHHHHHHHHCCCC
Confidence 9754321 22 356778888887 5665 4588999999999999999
Q ss_pred EEEEehhh
Q psy16199 741 AVQICSAV 748 (842)
Q Consensus 741 ~Vqv~ta~ 748 (842)
.| +|.+
T Consensus 135 ~I--~TTl 140 (283)
T cd04727 135 MI--RTKG 140 (283)
T ss_pred EE--EecC
Confidence 87 4544
No 352
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.97 E-value=0.021 Score=62.92 Aligned_cols=49 Identities=33% Similarity=0.484 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
.|..++.++.+++.. ++||++.||| +.+++.+.+.+||++|.+.++++.
T Consensus 279 ~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 279 APAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhC
Confidence 356688899998887 6999999999 599999999999999999999994
No 353
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.96 E-value=0.043 Score=58.89 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=98.1
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe---c
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---T 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---~ 640 (842)
.||.+.+--+.+.+ .++++.++|++.|.+--|.-. +..+.+..+++.+..++ .++||=..+ .
T Consensus 75 vpv~lHlDH~~~~e----~i~~Al~~G~tsVm~d~s~~~----------~~eni~~t~~v~~~a~~-~gv~veaE~ghlG 139 (281)
T PRK06806 75 VPVAVHFDHGMTFE----KIKEALEIGFTSVMFDGSHLP----------LEENIQKTKEIVELAKQ-YGATVEAEIGRVG 139 (281)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCEEEEcCCCCC----------HHHHHHHHHHHHHHHHH-cCCeEEEEeeeEC
Confidence 68998886444433 333444569999999543210 01222333333333332 356655443 1
Q ss_pred ----------CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHH
Q psy16199 641 ----------PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710 (842)
Q Consensus 641 ----------p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i 710 (842)
-..++..+..+..++.|+|.|.++... .+|-+.+ -.++.++.++++
T Consensus 140 ~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~----------------------~hg~~~~--~~~l~~~~L~~i 195 (281)
T PRK06806 140 GSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGN----------------------AHGMYNG--DPNLRFDRLQEI 195 (281)
T ss_pred CccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCC----------------------CCCCCCC--CCccCHHHHHHH
Confidence 013466676666667899999883210 1121211 134678999999
Q ss_pred HhhCCCCcEEEec--CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 711 AKMFPNFPILGIG--GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 711 ~~~~~~ipIi~~G--GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
++.+ ++|+++-| || +.+++.+++.+|++.|-+.|++.. .+.+.+++++
T Consensus 196 ~~~~-~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~-------a~~~a~~~~~ 245 (281)
T PRK06806 196 NDVV-HIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN-------SVITAVNNLV 245 (281)
T ss_pred HHhc-CCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH-------HHHHHHHHHH
Confidence 9998 79999999 98 789999999999999999999984 2445555555
No 354
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.95 E-value=0.005 Score=72.48 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=61.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec--Ccc-------c---c-CCHHH-----HHHHHhcCcEEecCCCceE
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG--CTN-------I---R-AVPEE-----VQLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~--~~~-------~---~-~~~~~-----~~~~~~~gV~i~~~~~v~~ 210 (842)
+|+|||||+.|+.+|..|++.|.+ |+++.... ... + + ....+ .+.+.+.|++++.++.++.
T Consensus 214 dVvIIGgGpAGl~AA~~la~~G~~-v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~ 292 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAARKGLR-TAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKK 292 (515)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEE
Confidence 499999999999999999999976 99886421 000 0 0 11111 2234456999999988888
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+...++ ...+.+.+ | .++.+|.+|+|+|..+
T Consensus 293 I~~~~~-~~~v~~~~-------------g--~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 293 IETEDG-LIVVTLES-------------G--EVLKAKSVIVATGARW 323 (515)
T ss_pred EEecCC-eEEEEECC-------------C--CEEEeCEEEECCCCCc
Confidence 863332 22233321 2 2689999999999883
No 355
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0063 Score=62.54 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=75.1
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEec
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIG 723 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~G 723 (842)
+++.+.|+...+.|+..+.+ +|++. ...| .+.-...++++.+.+ ++||=..|
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHl---------VDLdg---------------A~~g---~~~n~~~i~~i~~~~-~~~vQvGG 82 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHL---------VDLDG---------------AKAG---GPRNLEAIKEILEAT-DVPVQVGG 82 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEE---------eeccc---------------cccC---CcccHHHHHHHHHhC-CCCEEeeC
Confidence 47889999999999999999 33331 1111 344578899999998 79999999
Q ss_pred CcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 724 GIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 724 GI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
||+|-+++.+.+.+|++-|-++|..+. .|.++.++.+..
T Consensus 83 GIRs~~~v~~ll~~G~~rViiGt~av~-~p~~v~~~~~~~ 121 (241)
T COG0106 83 GIRSLEDVEALLDAGVARVIIGTAAVK-NPDLVKELCEEY 121 (241)
T ss_pred CcCCHHHHHHHHHCCCCEEEEecceec-CHHHHHHHHHHc
Confidence 999999999999999999999999984 599998887654
No 356
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.91 E-value=0.0068 Score=61.40 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=67.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc---------ccc------CCHH------------------------
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT---------NIR------AVPE------------------------ 190 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~---------~~~------~~~~------------------------ 190 (842)
|+|||+|++|+-+|..|++.|.+ |.+++++... .++ ....
T Consensus 20 V~IVGaGpaGl~aA~~La~~g~k-V~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~~ 98 (230)
T PF01946_consen 20 VAIVGAGPAGLTAAYYLAKAGLK-VAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVEF 98 (230)
T ss_dssp EEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHHH
T ss_pred EEEECCChhHHHHHHHHHHCCCe-EEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHHH
Confidence 99999999999999999999986 9999987521 000 0000
Q ss_pred ---HHHHHHhcCcEEecCCCceEEEccC-CcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcC
Q psy16199 191 ---EVQLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 258 (842)
Q Consensus 191 ---~~~~~~~~gV~i~~~~~v~~v~~~~-~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~ 258 (842)
.+..+.+.|++++....++.+...+ ++|.+|..+-....-.|.. =+...+.+..||-|||...+
T Consensus 99 ~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glH----vDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 99 TSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLH----VDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-----B-EEEEESEEEE---SSSS
T ss_pred HHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcC----CCcceEEEeEEEeCCCCchH
Confidence 1233446799999999999886555 7999998875433333321 13468999999999997633
No 357
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=96.91 E-value=0.021 Score=61.98 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh-CCccEEEEe---cC-----------C
Q psy16199 578 DWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS-VKIPFFVKL---TP-----------N 642 (842)
Q Consensus 578 ~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~-~~~Pv~vKl---~p-----------~ 642 (842)
+-.++|+..++.||++|-+..--. -++ .+. +.++.+++. +++||+.|= .| |
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~------~F~----Gs~----e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GAD 205 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEK------YFQ----GSF----ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGAD 205 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcC------cCC----CCH----HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCC
Confidence 456777777778999998853111 122 222 556788887 899999993 11 0
Q ss_pred --------h--hcHHHHHHHHHHCCCCEEEEecCCCcc-ccCCCCCCCCCcccCCCccccCCCCCCcc--ccchHHHHHH
Q psy16199 643 --------I--TNITDIAKAAYEGKADGVSAINTVSGL-MSLSADGNPWPAVGTKKLTTYGGVSGNAT--RPMGLKAVSS 709 (842)
Q Consensus 643 --------~--~~~~~~a~~~~~~G~d~i~v~nt~~~~-~~~~~~~~~~p~~~~~~~~~~gG~sG~~~--~p~al~~v~~ 709 (842)
+ .++.++.+.+.+.|.+.++=..+-... ..++.. +-..++ ...+.+ +.+.+....+
T Consensus 206 AVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~--ga~iIG---------INNRdL~Tf~vDl~~t~~ 274 (338)
T PLN02460 206 AILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIE--GVELIG---------INNRSLETFEVDISNTKK 274 (338)
T ss_pred cHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CCCEEE---------EeCCCCCcceECHHHHHH
Confidence 1 246677777777777766533221100 000000 001111 111111 2333555555
Q ss_pred HHh-----hC--CCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchh
Q psy16199 710 IAK-----MF--PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV 755 (842)
Q Consensus 710 i~~-----~~--~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~ 755 (842)
+.. .. .++-+++-+||.|++|+..+..+||++|-||+++|.. ++.
T Consensus 275 L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~-~dp 326 (338)
T PLN02460 275 LLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ-DDP 326 (338)
T ss_pred HhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC-CCH
Confidence 555 23 2466899999999999999999999999999999965 443
No 358
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.91 E-value=0.006 Score=71.88 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=61.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec--C-------cccc---C-CHHH-----HHHHHhcCcEEecCCCceE
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG--C-------TNIR---A-VPEE-----VQLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~--~-------~~~~---~-~~~~-----~~~~~~~gV~i~~~~~v~~ 210 (842)
.|+|||||+.|+.+|.++++.|.+ |+++..+. . ..++ . ...+ ...+.+.|++++.++.++.
T Consensus 213 dvvIIGgGpaGl~aA~~la~~G~~-v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~ 291 (517)
T PRK15317 213 DVLVVGGGPAGAAAAIYAARKGIR-TGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASK 291 (517)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 499999999999999999999976 88886531 0 0001 1 1111 1234466899999888888
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+...+ ....|.+.+ + .++.+|.||+|+|..+
T Consensus 292 I~~~~-~~~~V~~~~-------------g--~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 292 LEPAA-GLIEVELAN-------------G--AVLKAKTVILATGARW 322 (517)
T ss_pred EEecC-CeEEEEECC-------------C--CEEEcCEEEECCCCCc
Confidence 86432 222243321 2 2689999999999873
No 359
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=96.89 E-value=0.026 Score=63.14 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=103.4
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEec
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLT 640 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~ 640 (842)
.|+.+++.... +++++.+.++++.+.|++.+.+.++..... ..+++...++++++++.+ ++++.+...
T Consensus 127 v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~---------~~~~~~d~~~v~~ir~~~g~~~~l~vDaN 197 (357)
T cd03316 127 VRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG---------GEDLREDLARVRAVREAVGPDVDLMVDAN 197 (357)
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc---------hHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 56667664333 688999999988889999999987643110 134677889999999986 578999886
Q ss_pred CCh--hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCc
Q psy16199 641 PNI--TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFP 718 (842)
Q Consensus 641 p~~--~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ip 718 (842)
..+ ++..++++.+.+.+++.|- .| +.+..++..+++++.. ++|
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iE-----------------qP-----------------~~~~~~~~~~~l~~~~-~ip 242 (357)
T cd03316 198 GRWDLAEAIRLARALEEYDLFWFE-----------------EP-----------------VPPDDLEGLARLRQAT-SVP 242 (357)
T ss_pred CCCCHHHHHHHHHHhCccCCCeEc-----------------CC-----------------CCccCHHHHHHHHHhC-CCC
Confidence 544 4677888888777654431 01 1122366778888887 699
Q ss_pred EEEecCcCCHHHHHHHHHhC-CCEEEEehhhh
Q psy16199 719 ILGIGGIDSADVALQFIQAG-AHAVQICSAVQ 749 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l 749 (842)
|++...+.+.+|+.+++..| +|.|++--...
T Consensus 243 i~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 274 (357)
T cd03316 243 IAAGENLYTRWEFRDLLEAGAVDIIQPDVTKV 274 (357)
T ss_pred EEeccccccHHHHHHHHHhCCCCEEecCcccc
Confidence 99999999999999999854 88988764444
No 360
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.89 E-value=0.0048 Score=68.22 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=27.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||||..|+-+|..|++.|.+ |+|+++++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 399999999999999999999986 99999876
No 361
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.095 Score=52.97 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=105.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
+++++-+- +.+.=.-.++++.++|||++.+--. .+.+.+...++..++ .++-+.+-+..+
T Consensus 57 ~~IvAD~K---t~D~G~~e~~ma~~aGAd~~tV~g~---------------A~~~TI~~~i~~A~~-~~~~v~iDl~~~- 116 (217)
T COG0269 57 KIIVADLK---TADAGAIEARMAFEAGADWVTVLGA---------------ADDATIKKAIKVAKE-YGKEVQIDLIGV- 116 (217)
T ss_pred CeEEeeee---ecchhHHHHHHHHHcCCCEEEEEec---------------CCHHHHHHHHHHHHH-cCCeEEEEeecC-
Confidence 67777763 4444445577778899999998422 334556666666654 467788877653
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCC-CCcEEEe
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFP-NFPILGI 722 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~-~ipIi~~ 722 (842)
.++...++.+++.|+|-+.++=. +|.+. -| ...++..+..+++... ++.|...
T Consensus 117 ~~~~~~~~~l~~~gvd~~~~H~g------~D~q~--------------~G------~~~~~~~l~~ik~~~~~g~~vAVa 170 (217)
T COG0269 117 WDPEQRAKWLKELGVDQVILHRG------RDAQA--------------AG------KSWGEDDLEKIKKLSDLGAKVAVA 170 (217)
T ss_pred CCHHHHHHHHHHhCCCEEEEEec------ccHhh--------------cC------CCccHHHHHHHHHhhccCceEEEe
Confidence 46778889999999999998632 22221 11 1122566666766652 3789999
Q ss_pred cCcCCHHHHHHHHHhCCCEEEEehhhhcc-Cc-hhHHHHHHHHH
Q psy16199 723 GGIDSADVALQFIQAGAHAVQICSAVQNQ-DF-TVVDDYITGLQ 764 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv~ta~l~~-gp-~~~~~i~~~l~ 764 (842)
||| +++++.++...|++.|-+||++-.. +| ...+++++.|.
T Consensus 171 GGI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 171 GGI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID 213 (217)
T ss_pred cCC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence 998 8999999999999999999999832 23 44556655554
No 362
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.85 E-value=0.026 Score=57.30 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=95.1
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEE----EEe
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF----VKL 639 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~----vKl 639 (842)
.|+-+++.- ++. ..+...+...|||+|-+|.-+=-..+..|. +..+...+.+.-..+.. ++-++ ||-
T Consensus 86 iPvGvNVLr-Nd~---vaA~~IA~a~gA~FIRVN~~tg~~~tdqGi---ieg~A~e~~r~r~~L~~--~v~vlADv~VKH 156 (263)
T COG0434 86 IPVGVNVLR-NDA---VAALAIAYAVGADFIRVNVLTGAYATDQGI---IEGNAAELARYRARLGS--RVKVLADVHVKH 156 (263)
T ss_pred ccceeeeec-ccc---HHHHHHHHhcCCCEEEEEeeeceEecccce---ecchHHHHHHHHHhccC--CcEEEeecchhc
Confidence 688888752 232 233333344589999999876422222221 22333444455555552 33333 444
Q ss_pred cCChh--cHHHHHHH-HHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC
Q psy16199 640 TPNIT--NITDIAKA-AYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN 716 (842)
Q Consensus 640 ~p~~~--~~~~~a~~-~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ 716 (842)
.-.+. ++.+.++- ++..++|+|++++... | .|..++.+..+++.. +
T Consensus 157 a~~l~~~~~~~~v~dtver~~aDaVI~tG~~T-----------------------G-------~~~d~~el~~a~~~~-~ 205 (263)
T COG0434 157 AVHLGNRSLEEAVKDTVERGLADAVIVTGSRT-----------------------G-------SPPDLEELKLAKEAV-D 205 (263)
T ss_pred ccccCCcCHHHHHHHHHHccCCCEEEEecccC-----------------------C-------CCCCHHHHHHHHhcc-C
Confidence 33233 56666666 7778899999976422 1 333477778888887 5
Q ss_pred CcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccC
Q psy16199 717 FPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752 (842)
Q Consensus 717 ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~g 752 (842)
+|++..-|+ +++.+.+++.. ||++-++|.+=..|
T Consensus 206 ~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 206 TPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred CCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 999999997 89999999999 99999999998776
No 363
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.83 E-value=0.0017 Score=72.58 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=61.6
Q ss_pred CCCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc--c----c---CCHH----HHHHHHhcCcEEecCCCceE
Q psy16199 144 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN--I----R---AVPE----EVQLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 144 ~~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~--~----~---~~~~----~~~~~~~~gV~i~~~~~v~~ 210 (842)
+..+.+|+|||+|+.|+++|..|.+.|.+ |+++++.+... + + ...+ ..+.+.+.|++++.++.+..
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYE-VHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence 44555699999999999999999999875 99999875321 0 1 0111 23445567999988877654
Q ss_pred EEc---cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 211 VDV---KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 211 v~~---~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+.. ..+....... ...+...+.+|.||+|+|..
T Consensus 94 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 94 GEPLHEEEGDEFVERI-------------VSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccccc-------------CCHHHHHhhCCEEEEEeCCC
Confidence 421 0000000000 01111246899999999984
No 364
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.83 E-value=0.0088 Score=64.44 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=28.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||.+|+-+|..|++.|.+ |+|++++.
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~ 33 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLR-VLLLEKKS 33 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence 89999999999999999999975 99999885
No 365
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.81 E-value=0.0019 Score=66.49 Aligned_cols=58 Identities=21% Similarity=0.421 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 705 KAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 705 ~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
..+.++++.+.++|+|..|||+|.+.|.++.++|||.|.+|+++... ++ ++++++.++
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~-~~-~e~~~~~i~ 228 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED-PD-LEEALETIK 228 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH-H--HHHHHTHHH
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc-ch-HHHHHHHHh
Confidence 33445556556899999999999999999999999999999999843 54 555555544
No 366
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.80 E-value=0.0042 Score=63.21 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred EEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc-------------cccC--------------C-HH------------
Q psy16199 151 IVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-------------NIRA--------------V-PE------------ 190 (842)
Q Consensus 151 vVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~-------------~~~~--------------~-~~------------ 190 (842)
+|||||+.|+-+|..|.+.|.+.|+|+++.+.. ..+. . +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 699999999999999999998669999977411 0000 0 00
Q ss_pred --H----HH-HHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEcccc
Q psy16199 191 --E----VQ-LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 255 (842)
Q Consensus 191 --~----~~-~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~ 255 (842)
+ ++ .+.+.++++.+++.|+++...+++ ..|++.+ + .++.||.||+|+|.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~-------------~--~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRD-------------G--RTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETT-------------S---EEEEEEEEE---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEe-------------c--ceeeeeeEEEeeec
Confidence 1 11 133558889999999998754444 3354432 2 47889999999997
No 367
>PRK08999 hypothetical protein; Provisional
Probab=96.80 E-value=0.031 Score=61.27 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhh
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~ 748 (842)
.|..++.++++++.. ++||++.||| +.+++.+.+.+||++|-+.+++
T Consensus 265 ~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 265 APLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 456688888888887 7999999999 9999999999999999998876
No 368
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.013 Score=59.03 Aligned_cols=164 Identities=20% Similarity=0.195 Sum_probs=101.3
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.|+|+-|- +.++|+...+++.+.+.|.++|||-+++|.. .+.++.+++... -+++= ..++
T Consensus 13 ~~vI~Vlr-~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a-----------------~e~I~~l~~~~p-~~lIG-AGTV 72 (211)
T COG0800 13 QPVVPVIR-GDDVEEALPLAKALIEGGIPAIEITLRTPAA-----------------LEAIRALAKEFP-EALIG-AGTV 72 (211)
T ss_pred CCeeEEEE-eCCHHHHHHHHHHHHHcCCCeEEEecCCCCH-----------------HHHHHHHHHhCc-ccEEc-cccc
Confidence 57777775 5799999999999999999999999888742 356666666643 12221 1223
Q ss_pred hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCC-Ccc-----ccCCCCCCccccc----hHHHHHHHHhh
Q psy16199 644 TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTK-KLT-----TYGGVSGNATRPM----GLKAVSSIAKM 713 (842)
Q Consensus 644 ~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~-~~~-----~~gG~sG~~~~p~----al~~v~~i~~~ 713 (842)
.+. +-++.+.++|+++|+-=|........-. ....|.+.+- ..+ ..=|++.-..+|- ...+++.++.-
T Consensus 73 L~~-~q~~~a~~aGa~fiVsP~~~~ev~~~a~-~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP 150 (211)
T COG0800 73 LNP-EQARQAIAAGAQFIVSPGLNPEVAKAAN-RYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGP 150 (211)
T ss_pred cCH-HHHHHHHHcCCCEEECCCCCHHHHHHHH-hCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcHHHHHHHcCC
Confidence 333 4467888999998876443221100000 0112222100 000 0011222222221 23455666666
Q ss_pred CCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 714 FPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 714 ~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
+++++++-+||| +..++.+++.+|+.+|.+|+.+..
T Consensus 151 ~~~v~~~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 151 FPQVRFCPTGGV-SLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred CCCCeEeecCCC-CHHHHHHHHhCCceEEecCccccC
Confidence 668999999999 677999999999999999998884
No 369
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.76 E-value=0.011 Score=68.24 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=30.0
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
..+|+|||+|.+|+-+|..|.+.|.+ |+++++++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~-v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHT-VVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCe-EEEEecCC
Confidence 34599999999999999999999975 99999764
No 370
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.76 E-value=0.021 Score=62.88 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=81.6
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCc-CEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGA-DALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~aga-D~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~ 642 (842)
.|++.+=|.+.+..++.. .+.++|. -.|--| ..++...+.++.++....+...+ ..
T Consensus 35 ~Piv~apM~~vt~~~ma~---ava~~GglGvi~~~-----------------~~~~~~~~~i~~vk~~l~v~~~~--~~- 91 (325)
T cd00381 35 IPLVSAPMDTVTESEMAI---AMARLGGIGVIHRN-----------------MSIEEQAEEVRKVKGRLLVGAAV--GT- 91 (325)
T ss_pred CCEEecCCCcCCcHHHHH---HHHHCCCEEEEeCC-----------------CCHHHHHHHHHHhccCceEEEec--CC-
Confidence 688887775544444433 3334454 332211 23455666667666432222222 22
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
-.+..+.++.+.++|++.|.+.-+. |.+ +...++++++++..|++||++
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~-------------------------G~~-----~~~~~~i~~ik~~~p~v~Vi~- 140 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAH-------------------------GHS-----VYVIEMIKFIKKKYPNVDVIA- 140 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCC-------------------------CCc-----HHHHHHHHHHHHHCCCceEEE-
Confidence 1355778889999999998873221 111 234788899998886788887
Q ss_pred cCcCCHHHHHHHHHhCCCEEEE
Q psy16199 723 GGIDSADVALQFIQAGAHAVQI 744 (842)
Q Consensus 723 GGI~t~~da~~~l~~GA~~Vqv 744 (842)
|.+.|.+++.+++++|||+|.+
T Consensus 141 G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 141 GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCCCCHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999987
No 371
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.75 E-value=0.0079 Score=67.87 Aligned_cols=91 Identities=10% Similarity=0.205 Sum_probs=61.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCc-EEEEEEeecCccc--cCC---------HHHH-----HH-HHhcCcEEecCCCce
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI--RAV---------PEEV-----QL-AWEEKCEFLPFMSPV 209 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~-~Vtlv~r~~~~~~--~~~---------~~~~-----~~-~~~~gV~i~~~~~v~ 209 (842)
.+|||||||..|+.+|..|.+.+.+ +||++.+++.... +.. .+++ .. ..+.|++++.++.++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 3699999999999999999876432 4999988763211 111 1111 12 245699999998888
Q ss_pred EEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 210 ~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
.+..++ +. |.. ++ .++.+|.+|+|||.+|
T Consensus 83 ~id~~~-~~--v~~--------------~~--~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 83 DIDAEA-QV--VKS--------------QG--NQWQYDKLVLATGASA 111 (377)
T ss_pred EEECCC-CE--EEE--------------CC--eEEeCCEEEECCCCCC
Confidence 886432 21 221 11 3689999999999984
No 372
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.75 E-value=0.0021 Score=74.54 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---CHH----HHHHHHhcCcEEecCCCceEEEc
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VPE----EVQLAWEEKCEFLPFMSPVQVDV 213 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~~~----~~~~~~~~gV~i~~~~~v~~v~~ 213 (842)
+.+|+|||||+.|+.+|..|.+.|.+ |+++++.+... .+. ..+ ..+.+.+.|+++++++.+...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~-V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~-- 216 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD-VTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRD-- 216 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCc--
Confidence 44599999999999999999999975 99999875320 111 111 233456678999887654211
Q ss_pred cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 214 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 214 ~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+.+.+ ..+.+|.||+|||..
T Consensus 217 -------v~~~~----------------~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 217 -------ITLDE----------------LRAGYDAVFIGTGAG 236 (457)
T ss_pred -------cCHHH----------------HHhhCCEEEEccCCC
Confidence 11110 126799999999985
No 373
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.74 E-value=0.0039 Score=72.74 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=57.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccCCHHHHHHHHhcCcEEecCCCceEEEccCCcEEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTE 227 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~~~~~~~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~ 227 (842)
++|+|||+|.+|+++|..|.+.|.+ |+++++++.. ......+.+.+.||+++++..+. .
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~~~~---~~~~~~~~l~~~gv~~~~~~~~~-~---------------- 75 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGAR-VTVVDDGDDE---RHRALAAILEALGATVRLGPGPT-L---------------- 75 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchh---hhHHHHHHHHHcCCEEEECCCcc-c----------------
Confidence 4599999999999999999999975 9999876421 11222345667899988765432 0
Q ss_pred ccCCCCeeccCCceEEEECCEEEEccccCcCChhHH
Q psy16199 228 QNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVL 263 (842)
Q Consensus 228 ~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~ 263 (842)
...+|+||+++|.. |+..+.
T Consensus 76 ---------------~~~~D~Vv~s~Gi~-~~~~~~ 95 (480)
T PRK01438 76 ---------------PEDTDLVVTSPGWR-PDAPLL 95 (480)
T ss_pred ---------------cCCCCEEEECCCcC-CCCHHH
Confidence 23589999999999 565553
No 374
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=96.73 E-value=0.043 Score=65.80 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC-C--------------
Q psy16199 578 DWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP-N-------------- 642 (842)
Q Consensus 578 ~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p-~-------------- 642 (842)
+..++|+..++.||++|-+..- ..-+| .+. +.++.+++.+++||+.|=-- +
T Consensus 71 d~~~~a~~y~~~GA~aiSVlTe------~~~F~----Gs~----~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADa 136 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLTE------GRRFL----GSL----DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADL 136 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEecC------cCcCC----CCH----HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCE
Confidence 5667777778889999998521 11122 233 55667777889999998310 0
Q ss_pred -------h--hcHHHHHHHHHHCCCCEEEEecCCCcc-ccCCCCCCCCCcccCCCccccCCCCCCcc--ccchHHHHHHH
Q psy16199 643 -------I--TNITDIAKAAYEGKADGVSAINTVSGL-MSLSADGNPWPAVGTKKLTTYGGVSGNAT--RPMGLKAVSSI 710 (842)
Q Consensus 643 -------~--~~~~~~a~~~~~~G~d~i~v~nt~~~~-~~~~~~~~~~p~~~~~~~~~~gG~sG~~~--~p~al~~v~~i 710 (842)
+ .++.++.+.+.+.|.+.++=..+-... ..++. .-..++ ...+.+ ..+.+....++
T Consensus 137 vLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~---ga~iiG---------INnRdL~tf~vd~~~t~~L 204 (695)
T PRK13802 137 VLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAA---GAKVIG---------INARNLKDLKVDVNKYNEL 204 (695)
T ss_pred eehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC---CCCEEE---------EeCCCCccceeCHHHHHHH
Confidence 1 134455555555555544322211000 00000 000111 111111 23446666677
Q ss_pred HhhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchh
Q psy16199 711 AKMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTV 755 (842)
Q Consensus 711 ~~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~ 755 (842)
....| ++.+|+-+||.+++|+..+..+|||+|-||+++|.. ++.
T Consensus 205 ~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~-~dp 249 (695)
T PRK13802 205 AADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA-DDH 249 (695)
T ss_pred HhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC-CCH
Confidence 77765 477899999999999999999999999999999965 553
No 375
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.70 E-value=0.0056 Score=68.54 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=60.0
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcC--CcEEEEEEeecCccccCCHHH--------------HHH-HHhc-CcEEecCCCc
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGCTNIRAVPEE--------------VQL-AWEE-KCEFLPFMSP 208 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G--~~~Vtlv~r~~~~~~~~~~~~--------------~~~-~~~~-gV~i~~~~~v 208 (842)
+.+|||||||+.|+.+|..|.+.- ++ ||+|.+++...+...-.+ +.. +... +++++.. .+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~-itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVE-ITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EV 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCc-EEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EE
Confidence 345999999999999999999874 54 999999985443322111 112 2223 3777655 56
Q ss_pred eEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 209 ~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+.|..+..+| .+.+ ..++++|.+|+++|..+
T Consensus 81 ~~ID~~~k~V---~~~~---------------~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 81 TDIDRDAKKV---TLAD---------------LGEISYDYLVVALGSET 111 (405)
T ss_pred EEEcccCCEE---EeCC---------------CccccccEEEEecCCcC
Confidence 6665333332 2322 23799999999999984
No 376
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.70 E-value=0.0056 Score=67.80 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=28.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||.+|+-+|..|++.|. +|+|+++..
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~ 32 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGH-SVTLLERGD 32 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEeecc
Confidence 8999999999999999999997 599999873
No 377
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.67 E-value=0.12 Score=55.32 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=103.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecC
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTP 641 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p 641 (842)
.|+-+++.. .+++++.+.++...+.|+..+-++++ .+++.-.+.+++||+.. ++++.+....
T Consensus 75 i~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~KiKvg---------------~~~~~d~~~v~~vr~~~g~~~~l~vDan~ 138 (265)
T cd03315 75 VRVAHMLGL-GEPAEVAEEARRALEAGFRTFKLKVG---------------RDPARDVAVVAALREAVGDDAELRVDANR 138 (265)
T ss_pred eEEEEEecC-CCHHHHHHHHHHHHHCCCCEEEEecC---------------CCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 466666643 36788888888777789999999863 23455668889999876 5677777655
Q ss_pred C--hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcE
Q psy16199 642 N--ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPI 719 (842)
Q Consensus 642 ~--~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipI 719 (842)
. ..+..++++.+.+.|++.|-- | +.+..++..+++++.. ++||
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iEe-----------------P-----------------~~~~d~~~~~~l~~~~-~ipi 183 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVEQ-----------------P-----------------LPADDLEGRAALARAT-DTPI 183 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEC-----------------C-----------------CCcccHHHHHHHHhhC-CCCE
Confidence 3 347788999999988777632 1 1122266778888887 7999
Q ss_pred EEecCcCCHHHHHHHHHhC-CCEEEEehhhhccCchhHHHH
Q psy16199 720 LGIGGIDSADVALQFIQAG-AHAVQICSAVQNQDFTVVDDY 759 (842)
Q Consensus 720 i~~GGI~t~~da~~~l~~G-A~~Vqv~ta~l~~gp~~~~~i 759 (842)
++.+.+.+..|+.+++..+ ++.||+=-... .|..-..++
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~-GGi~~~~~~ 223 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIKTAKT-GGLTKAQRV 223 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEecccc-cCHHHHHHH
Confidence 9999999999999999855 89998765544 344333343
No 378
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.67 E-value=0.0024 Score=74.48 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=57.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---CHH----HHHHHHhcCcEEecCCCceEEEcc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VPE----EVQLAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~~~----~~~~~~~~gV~i~~~~~v~~v~~~ 214 (842)
.+|+|||+|+.|+.+|..|.+.|.+ |+++++.+... +|. ... ..+.+.+.||++++++.+...
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~-V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 219 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHT-VTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--- 219 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCe-EEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc---
Confidence 4599999999999999999999975 99999875310 111 111 234456789999988765311
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+. .+.....+|.||+|+|..
T Consensus 220 ------~~----------------~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 ------IS----------------ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred ------cC----------------HHHHHhhCCEEEEccCCC
Confidence 00 011235689999999987
No 379
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.66 E-value=0.0025 Score=73.97 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=57.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---CH----HHHHHHHhcCcEEecCCCceEEEcc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~~----~~~~~~~~~gV~i~~~~~v~~v~~~ 214 (842)
.+|+|||+|+.|+.+|..|++.|.+ |+++++.+... ++. .. ...+.+.+.|+++++++.+...
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 217 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQ-VVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--- 217 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc---
Confidence 4499999999999999999999985 99998875210 111 11 2344567789999988754211
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+.+.+ ....+|.||+|+|..+
T Consensus 218 ------~~~~~----------------~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 218 ------ISLDD----------------LLEDYDAVFLGVGTYR 238 (467)
T ss_pred ------cCHHH----------------HHhcCCEEEEEeCCCC
Confidence 10110 1246899999999873
No 380
>PRK08244 hypothetical protein; Provisional
Probab=96.63 E-value=0.019 Score=67.31 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||++|+-+|..|.+.|.+ |+|+++.+
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~~ 35 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK-TCVIERLK 35 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 399999999999999999999986 99999765
No 381
>PRK06184 hypothetical protein; Provisional
Probab=96.63 E-value=0.019 Score=67.39 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||++|+-+|..|.+.|.+ |+|+++.+
T Consensus 5 dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~~ 36 (502)
T PRK06184 5 DVLIVGAGPTGLTLAIELARRGVS-FRLIEKAP 36 (502)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence 399999999999999999999986 99999875
No 382
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.62 E-value=0.016 Score=61.03 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
++.+.++...+.|+..+.+. |.+. ..| .+...++++++.+.+ .+|+-..||
T Consensus 32 ~p~~~a~~~~~~g~~~lhiv---------DLd~------------a~g-------~~~n~~~i~~i~~~~-~~~v~vgGG 82 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLV---------DLDA------------AFG-------GGNNEMMLEEVVKLL-VVVEELSGG 82 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEE---------ECCC------------CCC-------CcchHHHHHHHHHHC-CCCEEEcCC
Confidence 56778888899999999883 2221 001 333478999999988 599999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHH
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGL 763 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l 763 (842)
|+|.+|+.+++.+||+-|.++|..+ ..|.++.++.+..
T Consensus 83 Irs~e~~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~ 120 (243)
T TIGR01919 83 RRDDSSLRAALTGGRARVNGGTAAL-ENPWWAAAVIRYG 120 (243)
T ss_pred CCCHHHHHHHHHcCCCEEEECchhh-CCHHHHHHHHHHc
Confidence 9999999999999999999999999 4699998886654
No 383
>PRK06847 hypothetical protein; Provisional
Probab=96.61 E-value=0.012 Score=66.12 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~ 37 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDP 37 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 3599999999999999999999986 99999765
No 384
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.59 E-value=0.037 Score=57.94 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=88.7
Q ss_pred EEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHH-HhhCCccEEEE-------
Q psy16199 567 IASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWV-RSSVKIPFFVK------- 638 (842)
Q Consensus 567 i~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v-~~~~~~Pv~vK------- 638 (842)
-+++.+|... +-++.+.++|||.+-||-.--..+ .-+|+.+.++.+.. .+.+=+-|=+|
T Consensus 78 ~v~vGGGIr~----e~v~~~l~aGa~rVvIGS~av~~~---------~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~ 144 (253)
T TIGR02129 78 GLQVGGGIND----TNAQEWLDEGASHVIVTSWLFTKG---------KFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRW 144 (253)
T ss_pred CEEEeCCcCH----HHHHHHHHcCCCEEEECcHHHhCC---------CCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcE
Confidence 3445555543 334444457999999973211100 13578888888877 33221111112
Q ss_pred ---ecCCh----hcHH-HHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHH
Q psy16199 639 ---LTPNI----TNIT-DIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710 (842)
Q Consensus 639 ---l~p~~----~~~~-~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i 710 (842)
+..-. -++. ++++.+++. +..|.+++- + .-|-++|+. +++++++
T Consensus 145 ~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI-------~---------------rDGtl~G~d-----lel~~~l 196 (253)
T TIGR02129 145 IVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAA-------D---------------VEGLCKGID-----EELVSKL 196 (253)
T ss_pred EEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeee-------c---------------ccCccccCC-----HHHHHHH
Confidence 21110 1455 889999988 999998542 1 123345544 7888899
Q ss_pred HhhCCCCcEEEecCcCCHHHHHHHHHh--CCCEEEEehhhhc
Q psy16199 711 AKMFPNFPILGIGGIDSADVALQFIQA--GAHAVQICSAVQN 750 (842)
Q Consensus 711 ~~~~~~ipIi~~GGI~t~~da~~~l~~--GA~~Vqv~ta~l~ 750 (842)
++.. ++|||++|||.+.+|+.+.-.. |...+-++.+++.
T Consensus 197 ~~~~-~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 197 GEWS-PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HhhC-CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 8886 8999999999999999988444 5445668888773
No 385
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.59 E-value=0.0099 Score=67.33 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=30.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
+|+|||||.+|+++|..|++.|.+ |+|+++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP-VILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc-EEEEecccc
Confidence 499999999999999999999986 999997764
No 386
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.56 E-value=0.017 Score=68.48 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=29.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||.+|+-+|.+|++.|.+ |+|+++.+
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG~~-V~LlEk~d 39 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRGLR-CILVERHD 39 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCe-EEEEECCC
Confidence 399999999999999999999975 99999764
No 387
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.55 E-value=0.0061 Score=68.38 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=57.8
Q ss_pred cEEEEcCChhHHHHHHHHHHc---CCcEEEEEEeecCccc-cCCHH---------HH-----HHHHhcCcEEecCCCceE
Q psy16199 149 TVIVLGAGDTAFDCATSALRC---GANKVLVVFRKGCTNI-RAVPE---------EV-----QLAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~---G~~~Vtlv~r~~~~~~-~~~~~---------~~-----~~~~~~gV~i~~~~~v~~ 210 (842)
+|||||||+.|+.+|..+.++ +. +|+|+++++.... +..+. ++ +.+.+.|++++.+ .++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEE
Confidence 489999999999999998643 33 5999998764322 11111 11 1233568998765 6777
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+...+ + .|.+.+ | .++.+|.+|+|+|..+
T Consensus 79 id~~~-~--~V~~~~-------------g--~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 79 IDPDR-R--KVLLAN-------------R--PPLSYDVLSLDVGSTT 107 (364)
T ss_pred Eeccc-C--EEEECC-------------C--CcccccEEEEccCCCC
Confidence 76322 2 133322 2 2589999999999983
No 388
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.53 E-value=0.016 Score=66.49 Aligned_cols=31 Identities=39% Similarity=0.427 Sum_probs=28.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+-+|..|++.|.+ |.|+++..
T Consensus 8 ViIVGaGpAG~~aA~~La~~G~~-V~llEr~~ 38 (428)
T PRK10157 8 AIIVGAGLAGSVAALVLAREGAQ-VLVIERGN 38 (428)
T ss_pred EEEECcCHHHHHHHHHHHhCCCe-EEEEEcCC
Confidence 99999999999999999999985 99999874
No 389
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.52 E-value=0.0033 Score=73.11 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=56.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------cc---CCH----HHHHHHHhcCcEEecCCCceEEEcc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IR---AVP----EEVQLAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~---~~~----~~~~~~~~~gV~i~~~~~v~~v~~~ 214 (842)
.+|+|||+|+.|+.+|..|.+.|.+ |+++++.+... ++ ... ...+.+.+.|+++++++.+...
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--- 219 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHK-VTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKD--- 219 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCc-EEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCc---
Confidence 4599999999999999999999975 99999875321 11 111 1234466779999888654210
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+.. ......+|.||+|+|..
T Consensus 220 ------~~~----------------~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 220 ------ITA----------------EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ------CCH----------------HHHHhhCCEEEEecCCC
Confidence 000 01124689999999987
No 390
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.52 E-value=0.0084 Score=74.08 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=62.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCC--cEEEEEEeecCcccc-C-CH---------HH-----HHHHHhcCcEEecCCCceEE
Q psy16199 150 VIVLGAGDTAFDCATSALRCGA--NKVLVVFRKGCTNIR-A-VP---------EE-----VQLAWEEKCEFLPFMSPVQV 211 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~--~~Vtlv~r~~~~~~~-~-~~---------~~-----~~~~~~~gV~i~~~~~v~~v 211 (842)
|||||+|..|+.+|..|.+.+. -+|||+.+.+..... . .. +. .+.+.+.||++++++.++.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 6899999999999999988642 259999988643110 0 11 11 12345679999999999998
Q ss_pred EccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 212 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 212 ~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
...... |.+.+ | .++.+|.+|+|||..|
T Consensus 81 d~~~k~---V~~~~-------------g--~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 81 DTDQKQ---VITDA-------------G--RTLSYDKLILATGSYP 108 (785)
T ss_pred ECCCCE---EEECC-------------C--cEeeCCEEEECCCCCc
Confidence 743222 33321 2 3689999999999984
No 391
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.51 E-value=0.0076 Score=69.16 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=59.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCccccC-CH---------HHH----HH-HHhcCcEEecCCCceEE
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRA-VP---------EEV----QL-AWEEKCEFLPFMSPVQV 211 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~~~~-~~---------~~~----~~-~~~~gV~i~~~~~v~~v 211 (842)
+.+|||||||+.|+.+|..|.+.+. +||||.+++...+.. .+ ..+ .. +...+++++. ..++.|
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I 87 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV 87 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence 3459999999999999998866555 499999887432221 11 111 11 2234677764 367777
Q ss_pred EccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 212 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 212 ~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
..++..+ .+.....+ .. .+++..++++|.+|+|+|..+
T Consensus 88 d~~~~~v---~~~~~~~~--~~---~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 88 DFEEKRV---KCGVVSKS--NN---ANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred EcCCCEE---EEeccccc--cc---ccCCceEecCCEEEECCCccc
Confidence 6433322 22110000 00 011224799999999999983
No 392
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.51 E-value=0.014 Score=66.69 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=30.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
+|+|||||..|+-+|..|.+.|.+ |+|+++++.
T Consensus 20 dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 52 (415)
T PRK07364 20 DVAIVGGGIVGLTLAAALKDSGLR-IALIEAQPA 52 (415)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCE-EEEEecCCc
Confidence 499999999999999999999985 999998763
No 393
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.50 E-value=0.01 Score=73.58 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=62.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC---cEEEEEEeecCccc-cC---------CHHH-----HHHHHhcCcEEecCCCce
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGA---NKVLVVFRKGCTNI-RA---------VPEE-----VQLAWEEKCEFLPFMSPV 209 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~---~~Vtlv~r~~~~~~-~~---------~~~~-----~~~~~~~gV~i~~~~~v~ 209 (842)
.+|||||+|..|+.+|..|.+.+. -+|||+.+.+.... +. ..+. ...+.+.||+++.++.++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 469999999999999999987531 25999988864321 10 0111 123456799999998888
Q ss_pred EEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 210 ~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
.+..+ .++ |.+. +| .++.+|.+|+|||..|
T Consensus 84 ~Id~~-~~~--V~~~-------------~G--~~i~yD~LVIATGs~p 113 (847)
T PRK14989 84 TINRQ-EKV--IHSS-------------AG--RTVFYDKLIMATGSYP 113 (847)
T ss_pred EEeCC-CcE--EEEC-------------CC--cEEECCEEEECCCCCc
Confidence 88632 221 2222 12 3689999999999984
No 394
>PRK06834 hypothetical protein; Provisional
Probab=96.47 E-value=0.018 Score=67.19 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||++|+-+|..|.+.|.+ |+|+++.+
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~ 36 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALAGVD-VAIVERRP 36 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 499999999999999999999986 99999875
No 395
>PRK10015 oxidoreductase; Provisional
Probab=96.47 E-value=0.028 Score=64.57 Aligned_cols=31 Identities=39% Similarity=0.459 Sum_probs=28.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+-+|..|++.|.+ |.++++..
T Consensus 8 ViIVGgGpAG~~aA~~LA~~G~~-VlliEr~~ 38 (429)
T PRK10015 8 AIVVGAGVAGSVAALVMARAGLD-VLVIERGD 38 (429)
T ss_pred EEEECcCHHHHHHHHHHHhCCCe-EEEEecCC
Confidence 99999999999999999999975 99999765
No 396
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.46 E-value=0.034 Score=65.26 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=28.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|||||+|..|+-+|..+++.|++ |.|+++.+
T Consensus 64 VvVVG~G~AGl~AAi~Aa~~Ga~-VivlEK~~ 94 (506)
T PRK06481 64 IVIVGAGGAGMSAAIEAKDAGMN-PVILEKMP 94 (506)
T ss_pred EEEECcCHHHHHHHHHHHHCCCC-EEEEECCC
Confidence 99999999999999999999985 99998654
No 397
>PRK06185 hypothetical protein; Provisional
Probab=96.45 E-value=0.029 Score=63.84 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=29.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||.+|+-+|..|++.|.+ |+|+++.+
T Consensus 8 dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~ 39 (407)
T PRK06185 8 DCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA 39 (407)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 499999999999999999999975 99999874
No 398
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.43 E-value=0.0043 Score=74.93 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=57.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---CHH----HHHHHHhcCcEEecCCCceEEEcc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VPE----EVQLAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~~~----~~~~~~~~gV~i~~~~~v~~v~~~ 214 (842)
++|+|||+|+.|+.+|..|++.|.+ |+++++.+... .+. ... ..+.+.+.||++++++.+..-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 386 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD--- 386 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc---
Confidence 4499999999999999999999985 99999886311 111 111 334566789999988765211
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+.+.+ ....+|.||+|+|..
T Consensus 387 ------~~~~~----------------l~~~~DaV~latGa~ 406 (639)
T PRK12809 387 ------ITFSD----------------LTSEYDAVFIGVGTY 406 (639)
T ss_pred ------CCHHH----------------HHhcCCEEEEeCCCC
Confidence 11111 124589999999986
No 399
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.42 E-value=0.075 Score=54.93 Aligned_cols=129 Identities=20% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC--------hhcHHHHHHHHHH
Q psy16199 584 KKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN--------ITNITDIAKAAYE 655 (842)
Q Consensus 584 ~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~--------~~~~~~~a~~~~~ 655 (842)
+.+.++|||++.+|.-+. .+.+.++++.+++. ++++++=+.+. ...+..++.+..+
T Consensus 74 ~~~~~~gad~vtvh~e~g---------------~~~l~~~i~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e 137 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTG---------------RDSLKAVVEAAAES-GGKVFVVVEMSHPGALEFIQPHADKLAKLAQE 137 (215)
T ss_pred HHHHhCCCCEEEEcCcCC---------------HHHHHHHHHHHHhc-CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Confidence 445557999999975321 23466777777753 56765533221 1246677778888
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCC-CcEEEecCcCCH-HHHHH
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPN-FPILGIGGIDSA-DVALQ 733 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~-ipIi~~GGI~t~-~da~~ 733 (842)
.|.++..... ..++.++++++..+. +.+ ..|||... .++.+
T Consensus 138 ~G~~g~~~~~------------------------------------~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~ 180 (215)
T PRK13813 138 AGAFGVVAPA------------------------------------TRPERVRYIRSRLGDELKI-ISPGIGAQGGKAAD 180 (215)
T ss_pred hCCCeEEECC------------------------------------CcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHH
Confidence 9998887511 013344566665532 334 78999864 25788
Q ss_pred HHHhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 734 FIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 734 ~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
++.+||+.+-+||+++.. ++ ..+..+.|++.|
T Consensus 181 ~~~aGad~iV~Gr~I~~~-~d-~~~~~~~l~~~~ 212 (215)
T PRK13813 181 AIKAGADYVIVGRSIYNA-AD-PREAAKAINEEI 212 (215)
T ss_pred HHHcCCCEEEECcccCCC-CC-HHHHHHHHHHHH
Confidence 888999999999998743 44 444455555544
No 400
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.42 E-value=0.048 Score=58.87 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHH--CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccC
Q psy16199 615 QDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYE--GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYG 692 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~--~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~g 692 (842)
.+++...+.++.++.....-++|=+.-.-++. +.++.+.+ .|+|.|++ |+ .-
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~-er~~~L~~~~~g~D~ivi----------D~---------------Ah 132 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTSDADF-EKTKQILALSPALNFICI----------DV---------------AN 132 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE----------EC---------------CC
Confidence 45677777777777543333444333222344 44555555 69999988 11 11
Q ss_pred CCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEE
Q psy16199 693 GVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQI 744 (842)
Q Consensus 693 G~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv 744 (842)
|+| ...++.|+.+++.+|+++|| .|.|-|++-+.+.+.+|||+|-|
T Consensus 133 Ghs-----~~~i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~vKV 178 (346)
T PRK05096 133 GYS-----EHFVQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIVKV 178 (346)
T ss_pred CcH-----HHHHHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEEEE
Confidence 232 23488999999999888755 68999999999999999999973
No 401
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.42 E-value=0.0023 Score=73.40 Aligned_cols=93 Identities=29% Similarity=0.409 Sum_probs=26.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc-------------------------------ccC-----------
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-------------------------------IRA----------- 187 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~-------------------------------~~~----------- 187 (842)
|||||||..|+-+|..+++.|.+ |.|+++.+... +..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~-VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAK-VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred EEEECccHHHHHHHHHHHHCCCE-EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 89999999999999999999985 99999776220 000
Q ss_pred ------CH-HH----H-HHHHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEcccc
Q psy16199 188 ------VP-EE----V-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 255 (842)
Q Consensus 188 ------~~-~~----~-~~~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~ 255 (842)
.+ +. + +.+.+.|+++++++.+.++..+++++++|++.+. .| ..++.++.+|-|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~-----------~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETK-----------SG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-----------cc-ccccccccccccccc
Confidence 00 00 1 1233569999999999999877778988888753 22 468999999999994
No 402
>PRK10262 thioredoxin reductase; Provisional
Probab=96.41 E-value=0.024 Score=62.38 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=27.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
.+|+|||||+.|+.+|..|.+.|.+ |++++..
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~-~~~ie~~ 38 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQ-PVLITGM 38 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCC-eEEEEee
Confidence 4499999999999999999999975 8888743
No 403
>PRK12831 putative oxidoreductase; Provisional
Probab=96.41 E-value=0.0048 Score=71.57 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=55.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc------cccC---CH-----HHHHHHHhcCcEEecCCCceEEEc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA---VP-----EEVQLAWEEKCEFLPFMSPVQVDV 213 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~------~~~~---~~-----~~~~~~~~~gV~i~~~~~v~~v~~ 213 (842)
.+|+|||||+.|+.+|..|++.|.+ |+|+++.+.. .++. .. .+.+.+.+.|+++++++.+...
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~~-- 217 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKT-- 217 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECCc--
Confidence 3499999999999999999999975 9999975421 0111 11 1234456779999888644110
Q ss_pred cCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEcccc
Q psy16199 214 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 255 (842)
Q Consensus 214 ~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~ 255 (842)
+.+.+ ....+.+|.||+|+|.
T Consensus 218 -------v~~~~--------------~~~~~~~d~viiAtGa 238 (464)
T PRK12831 218 -------VTIDE--------------LLEEEGFDAVFIGSGA 238 (464)
T ss_pred -------CCHHH--------------HHhccCCCEEEEeCCC
Confidence 11111 0113568999999997
No 404
>PLN02463 lycopene beta cyclase
Probab=96.40 E-value=0.017 Score=66.49 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=28.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||++|+-+|..|++.|.+ |.++++.+
T Consensus 31 VvIVGaGpAGLalA~~La~~Gl~-V~liE~~~ 61 (447)
T PLN02463 31 LVVVGGGPAGLAVAQQVSEAGLS-VCCIDPSP 61 (447)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEeccCc
Confidence 99999999999999999999975 99999865
No 405
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.38 E-value=0.28 Score=52.83 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=91.0
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC--
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP-- 641 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p-- 641 (842)
.|++..+.-+.+.+ .++++.++|++.|.+.-|.-. +..+.+..+++++..+. .+++|-..+.-
T Consensus 75 vpv~lhlDH~~~~e----~i~~ai~~Gf~sVmid~s~l~----------~~eni~~t~~v~~~a~~-~gv~Ve~ElG~~g 139 (282)
T TIGR01859 75 VPVALHLDHGSSYE----SCIKAIKAGFSSVMIDGSHLP----------FEENLALTKKVVEIAHA-KGVSVEAELGTLG 139 (282)
T ss_pred CeEEEECCCCCCHH----HHHHHHHcCCCEEEECCCCCC----------HHHHHHHHHHHHHHHHH-cCCEEEEeeCCCc
Confidence 57887774333333 333444568999888543210 01222333333333332 35666655522
Q ss_pred -----------ChhcHHHHHHHHHHCCCCEEEEe-cCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHH
Q psy16199 642 -----------NITNITDIAKAAYEGKADGVSAI-NTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSS 709 (842)
Q Consensus 642 -----------~~~~~~~~a~~~~~~G~d~i~v~-nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~ 709 (842)
..+++.+..+...+.|+|.|.++ +|.. |-+.+. .++.++.+++
T Consensus 140 g~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~h-----------------------g~~~~~--~~l~~e~L~~ 194 (282)
T TIGR01859 140 GIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSH-----------------------GKYKGE--PGLDFERLKE 194 (282)
T ss_pred CccccccccccccCCHHHHHHHHHHHCcCEEeeccCccc-----------------------cccCCC--CccCHHHHHH
Confidence 13366666666666999999873 3322 112221 2345888999
Q ss_pred HHhhCCCCcEEEec--CcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 710 IAKMFPNFPILGIG--GIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 710 i~~~~~~ipIi~~G--GI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
+++.+ ++|+++-| || +.+++.+++.+|++.|-++|.+.
T Consensus 195 i~~~~-~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 195 IKELT-NIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred HHHHh-CCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHHH
Confidence 99998 79999999 98 67889999999999999999988
No 406
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.36 E-value=0.015 Score=68.42 Aligned_cols=30 Identities=37% Similarity=0.600 Sum_probs=28.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
|+|||||..|+++|..+++.|.+ |.++++.
T Consensus 7 VIVVGGGpAG~eAA~~aAR~G~k-V~LiE~~ 36 (618)
T PRK05192 7 VIVVGGGHAGCEAALAAARMGAK-TLLLTHN 36 (618)
T ss_pred EEEECchHHHHHHHHHHHHcCCc-EEEEecc
Confidence 99999999999999999999986 9999987
No 407
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.36 E-value=0.063 Score=56.53 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=87.7
Q ss_pred HHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC---ChhcHHHHHHHHHHCCC
Q psy16199 583 SKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP---NITNITDIAKAAYEGKA 658 (842)
Q Consensus 583 a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p---~~~~~~~~a~~~~~~G~ 658 (842)
++.++++|+|+|=+.=+.- ...+..+. -.-+.+.+.+.++.|.+.+.+||++-+.- +..++.+.++.+.+.|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~---~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDG---GLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCC---CcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 5666778999998853322 11122221 12466888899999999999999999876 44467788889999999
Q ss_pred CEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCcccc--chHHHHHHHHhhCC---CCcEEEe-----cCcCCH
Q psy16199 659 DGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP--MGLKAVSSIAKMFP---NFPILGI-----GGIDSA 728 (842)
Q Consensus 659 d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p--~al~~v~~i~~~~~---~ipIi~~-----GGI~t~ 728 (842)
++|.+=.... ....|.+.+..+.+ ...+.++.+++... +++|++- -|=.+.
T Consensus 99 ~gv~iED~~~-------------------~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~ 159 (243)
T cd00377 99 AGIHIEDQVG-------------------PKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGL 159 (243)
T ss_pred EEEEEecCCC-------------------CccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCH
Confidence 9999932211 11233334444333 23444444444432 5777776 221344
Q ss_pred HHHH----HHHHhCCCEEEEehh
Q psy16199 729 DVAL----QFIQAGAHAVQICSA 747 (842)
Q Consensus 729 ~da~----~~l~~GA~~Vqv~ta 747 (842)
++++ .+.++|||+|.+-..
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC
Confidence 5554 344589999988543
No 408
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.35 E-value=0.27 Score=53.21 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=92.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhh---CCccEEEEec
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS---VKIPFFVKLT 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~---~~~Pv~vKl~ 640 (842)
.||.+.+--+ +.+ .++++.++|++.|.+.-|. .+.+...++++.+++. .++||=..+.
T Consensus 78 vPV~lHLDH~-~~~----~i~~ai~~GftSVm~d~S~--------------l~~eEni~~t~~v~~~a~~~gv~vE~ElG 138 (293)
T PRK07315 78 VPVAIHLDHG-HYE----DALECIEVGYTSIMFDGSH--------------LPVEENLKLAKEVVEKAHAKGISVEAEVG 138 (293)
T ss_pred CcEEEECCCC-CHH----HHHHHHHcCCCEEEEcCCC--------------CCHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5888888543 433 3334445689998886432 1233333444444432 3566655441
Q ss_pred -----CC-------hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHH
Q psy16199 641 -----PN-------ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVS 708 (842)
Q Consensus 641 -----p~-------~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~ 708 (842)
.+ ++++.+..+ +.+.|+|.|.++.. +.+|-|.++ .+++.++.++
T Consensus 139 ~i~g~ed~~~g~s~~t~peea~~-f~~tgvD~LAv~iG----------------------~vHG~y~t~-~k~l~~e~L~ 194 (293)
T PRK07315 139 TIGGEEDGIIGKGELAPIEDAKA-MVETGIDFLAAGIG----------------------NIHGPYPEN-WEGLDLDHLE 194 (293)
T ss_pred cccCcCccccCccCCCCHHHHHH-HHHcCCCEEeeccc----------------------cccccCCCC-CCcCCHHHHH
Confidence 11 245666444 44899999988521 123334332 1356789999
Q ss_pred HHHhhCCCCcEEEecC--cCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 709 SIAKMFPNFPILGIGG--IDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 709 ~i~~~~~~ipIi~~GG--I~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
++++.++++|++.-|| | +.+++.+++..|++-|-++|.+..
T Consensus 195 ~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 195 KLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH
Confidence 9999985599999999 8 678999999999999999999984
No 409
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.35 E-value=0.13 Score=54.16 Aligned_cols=149 Identities=17% Similarity=0.100 Sum_probs=102.2
Q ss_pred ccceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEeccC-CCCCCCCCCcccCCCCHHHHHHHHHHHHhhC----CccEE
Q psy16199 563 LSILIASIMCTY-NKDDWLELSKKTEKAGADALELNLSC-PHGMGERGMGLACGQDPEMVRNISLWVRSSV----KIPFF 636 (842)
Q Consensus 563 ~~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~sc-P~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~----~~Pv~ 636 (842)
..|+++-+-.|+ +.+++.+.++++.++|+++|.|.=.. |...+. .|....-+++...+.++++++.. +++|+
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~--~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~Ii 146 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGH--HGGKVLVPIEEFVAKIKAARDARDDLPDFVII 146 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccC--CCCCeecCHHHHHHHHHHHHHHHhccCCeEEE
Confidence 378998875544 56789999999999999999994322 211110 12222357777777777777653 57788
Q ss_pred EE-----ec-CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHH
Q psy16199 637 VK-----LT-PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI 710 (842)
Q Consensus 637 vK-----l~-p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i 710 (842)
+. .. ..+++..+-+++..++|||+|.+.. |...+.++++
T Consensus 147 ARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~-----------------------------------~~~~~~~~~~ 191 (243)
T cd00377 147 ARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEG-----------------------------------LKDPEEIRAF 191 (243)
T ss_pred EEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCC-----------------------------------CCCHHHHHHH
Confidence 88 33 4577888999999999999999821 1136778888
Q ss_pred HhhCCCCcEEEecCcCC-HHHHHHHHHhCCCEEEEehhhh
Q psy16199 711 AKMFPNFPILGIGGIDS-ADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 711 ~~~~~~ipIi~~GGI~t-~~da~~~l~~GA~~Vqv~ta~l 749 (842)
.++. +.||+.+-.=.. .....++-++|.+.|-++..++
T Consensus 192 ~~~~-~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~ 230 (243)
T cd00377 192 AEAP-DVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALL 230 (243)
T ss_pred HhcC-CCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHH
Confidence 8886 688877632111 1356677778999998777666
No 410
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.34 E-value=0.028 Score=63.90 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=29.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||+|+.|.-+|..|++.|.+ |.+++++.
T Consensus 6 VvIVGaGPAGs~aA~~la~~G~~-VlvlEk~~ 36 (396)
T COG0644 6 VVIVGAGPAGSSAARRLAKAGLD-VLVLEKGS 36 (396)
T ss_pred EEEECCchHHHHHHHHHHHcCCe-EEEEecCC
Confidence 99999999999999999999965 99999876
No 411
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.34 E-value=0.039 Score=56.76 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
+..+ +..+.+.|+|.+.++--+... ...+ ...+..++.+.++.+...++||++.||
T Consensus 111 ~~~e-~~~A~~~gaDYi~lgpvf~T~-------------------tK~~----~~~~~G~~~l~~~~~~~~~~PV~AiGG 166 (211)
T PRK03512 111 DDME-IDVALAARPSYIALGHVFPTQ-------------------TKQM----PSAPQGLAQLARHVERLADYPTVAIGG 166 (211)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCC-------------------CCCC----CCCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 4444 466678899999984221110 0111 012344676777766633699999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhhccCchhH
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQNQDFTVV 756 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~ 756 (842)
| +.+++.+.+.+||++|-+.++++.. .+..
T Consensus 167 I-~~~ni~~l~~~Ga~GiAvisai~~~-~d~~ 196 (211)
T PRK03512 167 I-SLERAPAVLATGVGSIAVVSAITQA-ADWR 196 (211)
T ss_pred C-CHHHHHHHHHcCCCEEEEhhHhhCC-CCHH
Confidence 9 6999999999999999999999944 4433
No 412
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.32 E-value=0.029 Score=63.63 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCC
Confidence 3499999999999999999999986 99999886
No 413
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.28 E-value=0.12 Score=58.08 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHhhCC--------CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHHHh
Q psy16199 700 RPMGLKAVSSIAKMFP--------NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYL 769 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~--------~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~ 769 (842)
.|..++.++++++... ++||++.||| +.+++.+.+.+||++|-|-|+++.. .+ +....+.|.+.|..
T Consensus 340 ~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~A-~D-P~aa~~~l~~~~~~ 414 (437)
T PRK12290 340 KPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITLA-ED-PQLVIEFFDQVMAE 414 (437)
T ss_pred CCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhcC-CC-HHHHHHHHHHHHhh
Confidence 4566777777666542 5999999999 8999999999999999999999943 33 33444455554433
No 414
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.27 E-value=0.045 Score=63.60 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=28.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|||||+|..|+-+|..+++.|.+ |.|+++.+
T Consensus 7 VvVVG~G~aGl~AA~~aa~~G~~-V~vlEk~~ 37 (466)
T PRK08274 7 VLVIGGGNAALCAALAAREAGAS-VLLLEAAP 37 (466)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEEeCCC
Confidence 99999999999999999999985 99999754
No 415
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.26 E-value=0.071 Score=52.83 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEE--EEec-C----ChhcHHHHHHH
Q psy16199 580 LELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFF--VKLT-P----NITNITDIAKA 652 (842)
Q Consensus 580 ~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~--vKl~-p----~~~~~~~~a~~ 652 (842)
..+|+.++..||-+|-+|- .+-++++|+.+++||+ +|-. + .++-..+-++.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~----------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~ 59 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG----------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDA 59 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES----------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHH
T ss_pred HHHHHHHHHCCceEEEcCC----------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHH
Confidence 4567777778999999971 1557889999999987 5631 1 11222344678
Q ss_pred HHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHH
Q psy16199 653 AYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVAL 732 (842)
Q Consensus 653 ~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~ 732 (842)
+.++|+|-|.+=.|... +| ....++++++++.+ ......|.|.+|+.
T Consensus 60 l~~aGadIIAlDaT~R~----------Rp-------------------~~l~~li~~i~~~~----~l~MADist~ee~~ 106 (192)
T PF04131_consen 60 LAEAGADIIALDATDRP----------RP-------------------ETLEELIREIKEKY----QLVMADISTLEEAI 106 (192)
T ss_dssp HHHCT-SEEEEE-SSSS-----------S-------------------S-HHHHHHHHHHCT----SEEEEE-SSHHHHH
T ss_pred HHHcCCCEEEEecCCCC----------CC-------------------cCHHHHHHHHHHhC----cEEeeecCCHHHHH
Confidence 88999997777443221 11 12367888888876 45566789999999
Q ss_pred HHHHhCCCEEEEehhhh
Q psy16199 733 QFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 733 ~~l~~GA~~Vqv~ta~l 749 (842)
.+..+|+|.| +|.+.
T Consensus 107 ~A~~~G~D~I--~TTLs 121 (192)
T PF04131_consen 107 NAAELGFDII--GTTLS 121 (192)
T ss_dssp HHHHTT-SEE--E-TTT
T ss_pred HHHHcCCCEE--Ecccc
Confidence 9999999988 55554
No 416
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.26 E-value=0.0057 Score=70.66 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=43.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc------ccc---CCHH----HHHHHHhcCcEEecCCCc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIR---AVPE----EVQLAWEEKCEFLPFMSP 208 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~------~~~---~~~~----~~~~~~~~gV~i~~~~~v 208 (842)
.+|+|||+|+.|+.+|..|++.|.+ |+|+++.+.. .++ ...+ ..+.+.+.||+++++..+
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHS-VTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 3499999999999999999999975 9999986522 012 1111 233456779999888643
No 417
>PRK06801 hypothetical protein; Provisional
Probab=96.24 E-value=0.24 Score=53.26 Aligned_cols=146 Identities=12% Similarity=0.178 Sum_probs=92.8
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEec---
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT--- 640 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~--- 640 (842)
.||.+.+--+.+.+. ++++.++|++.|.+.-|-- .+..+-+..+++++..+. .+++|=.-+.
T Consensus 75 vpV~lHlDH~~~~e~----i~~Ai~~GftSVm~D~S~l----------~~eeNi~~t~~v~~~a~~-~gv~VE~ElG~vg 139 (286)
T PRK06801 75 IPVVLNLDHGLHFEA----VVRALRLGFSSVMFDGSTL----------EYEENVRQTREVVKMCHA-VGVSVEAELGAVG 139 (286)
T ss_pred CCEEEECCCCCCHHH----HHHHHHhCCcEEEEcCCCC----------CHHHHHHHHHHHHHHHHH-cCCeEEeecCccc
Confidence 688888865444433 3344456999998853311 111233444444444433 2444422220
Q ss_pred ---------C----ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHH
Q psy16199 641 ---------P----NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAV 707 (842)
Q Consensus 641 ---------p----~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v 707 (842)
. ..+++.+..+..++.|+|.+.++ ++. .+|-|.+. .++.++.+
T Consensus 140 g~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAva--iGt--------------------~Hg~y~~~--~~l~~e~l 195 (286)
T PRK06801 140 GDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVA--IGN--------------------AHGKYKGE--PKLDFARL 195 (286)
T ss_pred CCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEec--cCC--------------------CCCCCCCC--CCCCHHHH
Confidence 0 03355666666668999999882 221 23434442 23668889
Q ss_pred HHHHhhCCCCcEEEecC--cCCHHHHHHHHHhCCCEEEEehhhhc
Q psy16199 708 SSIAKMFPNFPILGIGG--IDSADVALQFIQAGAHAVQICSAVQN 750 (842)
Q Consensus 708 ~~i~~~~~~ipIi~~GG--I~t~~da~~~l~~GA~~Vqv~ta~l~ 750 (842)
+++++.+ ++|++.-|| |. .+++.+++.+|++-|-++|.+..
T Consensus 196 ~~i~~~~-~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 196 AAIHQQT-GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred HHHHHhc-CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHH
Confidence 9999988 699999999 84 68899999999999999999983
No 418
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.23 E-value=0.021 Score=64.73 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=29.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 8 dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 499999999999999999999985 99999875
No 419
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.22 E-value=0.019 Score=68.22 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=57.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc----------ccC----C-HHHHH----HHHhcCcEEecCCCceE
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN----------IRA----V-PEEVQ----LAWEEKCEFLPFMSPVQ 210 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~----------~~~----~-~~~~~----~~~~~gV~i~~~~~v~~ 210 (842)
|+|||||+.|+.+|..|++.|.+ |+|+++..... .+. . ....+ .+.+.|++++ ...++.
T Consensus 7 VvIIGgGpAGL~AA~~lar~g~~-V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~ 84 (555)
T TIGR03143 7 LIIIGGGPAGLSAGIYAGRAKLD-TLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLD 84 (555)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEE
Confidence 99999999999999999999975 99999764210 011 1 11112 2345688875 556666
Q ss_pred EEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 211 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 211 v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+.. ++....|... ++ ++.+|.||+|+|..|
T Consensus 85 i~~-~~~~~~V~~~-------------~g---~~~a~~lVlATGa~p 114 (555)
T TIGR03143 85 VDF-DGDIKTIKTA-------------RG---DYKTLAVLIATGASP 114 (555)
T ss_pred EEe-cCCEEEEEec-------------CC---EEEEeEEEECCCCcc
Confidence 652 2332223221 12 478899999999984
No 420
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.21 E-value=0.049 Score=56.38 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=70.9
Q ss_pred CccEEEEe---cCCh------hcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccc
Q psy16199 632 KIPFFVKL---TPNI------TNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM 702 (842)
Q Consensus 632 ~~Pv~vKl---~p~~------~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~ 702 (842)
++||++=+ +|.- .++.++|+..++.|+++|.+. +.. +-+.|
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~-~~~-----------------------~~~~g------ 59 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVL-TEP-----------------------KYFQG------ 59 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEE-eCc-----------------------cccCC------
Confidence 47888765 3432 368999999999999999872 111 00111
Q ss_pred hHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHH
Q psy16199 703 GLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYIT 761 (842)
Q Consensus 703 al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~ 761 (842)
..+.++.+++.. ++||+.-|+|.+.+++.+++++||+.|.+....+. +..++++.+
T Consensus 60 ~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~--~~~~~~~~~ 115 (217)
T cd00331 60 SLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD--DEQLKELYE 115 (217)
T ss_pred CHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC--HHHHHHHHH
Confidence 146777788876 79999999999999999999999999999888772 344444443
No 421
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.20 E-value=0.017 Score=67.91 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=26.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
++|+|||+|.+|+-.|..|.+.|.+ |+++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E-EEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC-CeEEecCC
Confidence 4699999999999999999999985 99999775
No 422
>PRK05868 hypothetical protein; Validated
Probab=96.19 E-value=0.023 Score=63.95 Aligned_cols=32 Identities=34% Similarity=0.242 Sum_probs=29.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||||..|+.+|..|++.|.+ |+|+++.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYS-VTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Confidence 599999999999999999999986 99999876
No 423
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.17 E-value=0.039 Score=65.39 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 12 dV~IVGaGp~Gl~lA~~L~~~G~~-v~v~Er~~ 43 (538)
T PRK06183 12 DVVIVGAGPVGLTLANLLGQYGVR-VLVLERWP 43 (538)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 499999999999999999999986 99999875
No 424
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.17 E-value=0.0073 Score=73.07 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---C----HHHHHHHHhcCcEEecCCCceEEEcc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---V----PEEVQLAWEEKCEFLPFMSPVQVDVK 214 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~----~~~~~~~~~~gV~i~~~~~v~~v~~~ 214 (842)
.+|+|||+|+.|+.+|..|++.|.+ |+++++.+... ++. . +.+++.+.+.|+++++++.+. +.
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-- 269 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-- 269 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc--
Confidence 3499999999999999999999975 99999875320 111 1 123455677899998876431 10
Q ss_pred CCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCc
Q psy16199 215 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 257 (842)
Q Consensus 215 ~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~ 257 (842)
+.+.+ ....+|.||+|+|..+
T Consensus 270 ------v~~~~----------------~~~~~DaVilAtGa~~ 290 (652)
T PRK12814 270 ------ITLEE----------------LQKEFDAVLLAVGAQK 290 (652)
T ss_pred ------cCHHH----------------HHhhcCEEEEEcCCCC
Confidence 11110 1234899999999873
No 425
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.16 E-value=0.14 Score=54.15 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=90.5
Q ss_pred cceEEEeccCCC------HhHHHHHHHHHhhcCcCEEEEec--cCCCCCCCCCCcccCCCCHHHHHHHHHHHHh--hCCc
Q psy16199 564 SILIASIMCTYN------KDDWLELSKKTEKAGADALELNL--SCPHGMGERGMGLACGQDPEMVRNISLWVRS--SVKI 633 (842)
Q Consensus 564 ~pvi~si~~g~~------~e~~~~~a~~~~~agaD~ielN~--scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~--~~~~ 633 (842)
.|+|+.++++.+ .+....-++.+...|||++-+++ +++ ...+.++++-+-+.+ ..++
T Consensus 75 ~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~-------------~E~~~l~~l~~v~~ea~~~G~ 141 (264)
T PRK08227 75 KPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSE-------------YEHQSIKNIIQLVDAGLRYGM 141 (264)
T ss_pred CcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCH-------------HHHHHHHHHHHHHHHHHHhCC
Confidence 688998886422 12222334445556999877654 322 122334343332222 3589
Q ss_pred cEEEEecC---Chh----cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHH
Q psy16199 634 PFFVKLTP---NIT----NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKA 706 (842)
Q Consensus 634 Pv~vKl~p---~~~----~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~ 706 (842)
|+++ +.| ++. -+...++.+.+.|||.|-+- |+ . +.
T Consensus 142 Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-----------------------------y~-------~-~~ 183 (264)
T PRK08227 142 PVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-----------------------------YV-------E-EG 183 (264)
T ss_pred cEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-----------------------------CC-------H-HH
Confidence 9998 644 121 25567888899999998870 11 1 34
Q ss_pred HHHHHhhCCCCcEEEecCcC-CHHHHH----HHHHhCCCEEEEehhhhccCchhHHHHHHHHHHH
Q psy16199 707 VSSIAKMFPNFPILGIGGID-SADVAL----QFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTL 766 (842)
Q Consensus 707 v~~i~~~~~~ipIi~~GGI~-t~~da~----~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~ 766 (842)
++++.+.. .+||+..||=. +.+|+. +++.+||.+|.+||-+.++. -...+.+.|...
T Consensus 184 f~~vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~--~p~~~~~al~~I 245 (264)
T PRK08227 184 FERITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSE--HPVAMIKAVHAV 245 (264)
T ss_pred HHHHHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccC--CHHHHHHHHHHH
Confidence 55666666 59999999965 344444 45568999999999998652 334555555543
No 426
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.2 Score=56.60 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHcCCc-EEEEEEeec
Q psy16199 146 LKGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG 181 (842)
Q Consensus 146 ~~~kVvVIGgG~~g~e~A~~l~~~G~~-~Vtlv~r~~ 181 (842)
...+|+|+|+|.+.+|.-..|.+.|.+ .+|++.|++
T Consensus 195 ~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 195 ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 344599999999999999999987753 489999887
No 427
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.13 E-value=0.038 Score=62.77 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcC--CcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G--~~~Vtlv~r~~ 181 (842)
.|+|||||.+|+-+|..|++.| . +|+|+++.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCC
Confidence 3999999999999999999986 5 499999875
No 428
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.12 E-value=0.2 Score=52.51 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=105.1
Q ss_pred HHHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCC-ccEEEEecCCh----hcHHHHHHHHHH
Q psy16199 582 LSKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVK-IPFFVKLTPNI----TNITDIAKAAYE 655 (842)
Q Consensus 582 ~a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~-~Pv~vKl~p~~----~~~~~~a~~~~~ 655 (842)
.|+.++++|+|+|=+.=+.. ...+..+ .-.-..+.+...++.|++.++ +||++-+.-.. .+..+.++.+.+
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD---~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDD---TLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCC---CCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 35666778999998853211 1011111 012467888888999998886 79999995432 356677899999
Q ss_pred CCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcC---------
Q psy16199 656 GKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGID--------- 726 (842)
Q Consensus 656 ~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~--------- 726 (842)
+|+++|.+ ++. ....+.++.+++. .++|++==|..
T Consensus 101 aGa~gv~i----------------------ED~------------~~~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg 144 (240)
T cd06556 101 AGAAGVKI----------------------EGG------------EWHIETLQMLTAA--AVPVIAHTGLTPQSVNTSGG 144 (240)
T ss_pred cCCcEEEE----------------------cCc------------HHHHHHHHHHHHc--CCeEEEEeCCchhhhhccCC
Confidence 99999998 110 0124455566554 37888765641
Q ss_pred ------C-------HHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHHHhcCCCccccCCCCCCCccccCCCCC
Q psy16199 727 ------S-------ADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLKSTQLKGWDGQSPPTPVHQKGKPA 793 (842)
Q Consensus 727 ------t-------~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~~i~~~~~~~~~~~~~~~g~~~ 793 (842)
+ .+.+..+.++||+++-+-. . ....++++.+.+.-- ..+. -.+..-.|+ +
T Consensus 145 ~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~-~---~~e~~~~i~~~~~~P--~~~~----------gag~~~dgq-~ 207 (240)
T cd06556 145 DEGQYRGDEAGEQLIADALAYAPAGADLIVMEC-V---PVELAKQITEALAIP--LAGI----------GAGSGTDGQ-F 207 (240)
T ss_pred ceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcC-C---CHHHHHHHHHhCCCC--EEEE----------ecCcCCCce-E
Confidence 1 3345556679999997752 2 356666665554310 0111 011222333 6
Q ss_pred CcchhhccCCCCCchhhHHHHHHH
Q psy16199 794 YQFRDKEGKAIPNFGEYKKIRENL 817 (842)
Q Consensus 794 ~~~~~~~g~~~~~~~~~~~~~~~~ 817 (842)
-.+.|++|..-.+.-+|.+.-.++
T Consensus 208 lv~~d~lg~~~~~~p~f~~~~~~~ 231 (240)
T cd06556 208 LVLADAFGITGGHIPKFAKNFHAE 231 (240)
T ss_pred EeHHhhhcccCCCCCchHHHHhhh
Confidence 778888888544444444333333
No 429
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.11 E-value=0.31 Score=52.51 Aligned_cols=145 Identities=18% Similarity=0.145 Sum_probs=92.5
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.|+|+++. +.+.++..++++.++++|+|++-+- .|... ..+.+.+.+..+.|.+.+++||++--.|..
T Consensus 67 ~~vi~gv~-~~~~~~~i~~a~~a~~~Gad~v~v~--pP~y~---------~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~ 134 (281)
T cd00408 67 VPVIAGVG-ANSTREAIELARHAEEAGADGVLVV--PPYYN---------KPSQEGIVAHFKAVADASDLPVILYNIPGR 134 (281)
T ss_pred CeEEEecC-CccHHHHHHHHHHHHHcCCCEEEEC--CCcCC---------CCCHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence 69999996 4678899999999999999999993 24321 135688889999999989999999877754
Q ss_pred h---cHHHHHHHHHHC-CCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcE
Q psy16199 644 T---NITDIAKAAYEG-KADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPI 719 (842)
Q Consensus 644 ~---~~~~~a~~~~~~-G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipI 719 (842)
+ -..++.+.+.+. .+.||.-+ ++ .+..+.++.+..++--.
T Consensus 135 tg~~l~~~~~~~L~~~~~v~giK~s------------------------------~~------d~~~~~~~~~~~~~~~~ 178 (281)
T cd00408 135 TGVDLSPETIARLAEHPNIVGIKDS------------------------------SG------DLDRLTRLIALLGPDFA 178 (281)
T ss_pred cCCCCCHHHHHHHhcCCCEEEEEeC------------------------------CC------CHHHHHHHHHhcCCCeE
Confidence 2 123334444332 12222220 00 13445555555432223
Q ss_pred EEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHH
Q psy16199 720 LGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYIT 761 (842)
Q Consensus 720 i~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~ 761 (842)
+.+|. -..+...+.+|+++...+++-+. |..+.++.+
T Consensus 179 v~~G~---d~~~~~~l~~G~~G~i~~~~n~~--p~~~~~~~~ 215 (281)
T cd00408 179 VLSGD---DDLLLPALALGADGAISGAANVA--PKLAVALYE 215 (281)
T ss_pred EEEcc---hHHHHHHHHcCCCEEEehHHhhC--HHHHHHHHH
Confidence 33343 46777888999999887776552 555555443
No 430
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.09 E-value=0.0079 Score=69.64 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHH--cCCcEEEEEEeecC
Q psy16199 147 KGTVIVLGAGDTAFDCATSALR--CGANKVLVVFRKGC 182 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~--~G~~~Vtlv~r~~~ 182 (842)
+.+|+|||+|+.|+.+|..|++ .|.+ |+|+++.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~-Vtv~E~~p~ 62 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR-VDIIERLPT 62 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe-EEEEecCCC
Confidence 3459999999999999999987 6775 999998874
No 431
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.09 E-value=0.013 Score=65.18 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=55.4
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc---------cccCC--------HHHHHHHHhcCcEEecCCC
Q psy16199 145 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT---------NIRAV--------PEEVQLAWEEKCEFLPFMS 207 (842)
Q Consensus 145 ~~~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~---------~~~~~--------~~~~~~~~~~gV~i~~~~~ 207 (842)
...++++|||||.+|++.|.+|++.|.+ |+++++.+.. .+|.. +...+.....+|++++.+.
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~-v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFK-VYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCe-EEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence 3455699999999999999999999997 9999988732 22222 1112222345899999999
Q ss_pred ceEEEccCCcEEEEEEE
Q psy16199 208 PVQVDVKDNKIAGMQFN 224 (842)
Q Consensus 208 v~~v~~~~~~v~~V~~~ 224 (842)
|+++.+.-|..+ |.+.
T Consensus 201 V~ev~G~vGnF~-vki~ 216 (622)
T COG1148 201 VEEVSGSVGNFT-VKIE 216 (622)
T ss_pred eeeecccccceE-EEEe
Confidence 999975545443 4444
No 432
>PRK06126 hypothetical protein; Provisional
Probab=96.08 E-value=0.05 Score=64.59 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
-+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr~~ 40 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVD-SILVERKD 40 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence 3599999999999999999999986 99999775
No 433
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.08 E-value=0.13 Score=58.79 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe---cC-----------C--
Q psy16199 579 WLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL---TP-----------N-- 642 (842)
Q Consensus 579 ~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl---~p-----------~-- 642 (842)
..++|+.. +.||++|-+..-- .-++ .+. +.++.+++.+++||+.|= .+ |
T Consensus 72 ~~~~a~~y-~~gA~aiSVlTe~------~~F~----Gs~----~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADav 136 (454)
T PRK09427 72 PAEIARVY-KHYASAISVLTDE------KYFQ----GSF----DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAI 136 (454)
T ss_pred HHHHHHHH-HcCCeEEEEecCc------CcCC----CCH----HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCch
Confidence 44555555 4589998885311 1122 223 445677888899999993 11 0
Q ss_pred ------h--hcHHHHHHHHHHCCCCEEEEecCCCccc-cCCCCCCCCCcccCCCccccCCCCCCcc--ccchHHHHHHHH
Q psy16199 643 ------I--TNITDIAKAAYEGKADGVSAINTVSGLM-SLSADGNPWPAVGTKKLTTYGGVSGNAT--RPMGLKAVSSIA 711 (842)
Q Consensus 643 ------~--~~~~~~a~~~~~~G~d~i~v~nt~~~~~-~~~~~~~~~p~~~~~~~~~~gG~sG~~~--~p~al~~v~~i~ 711 (842)
+ .++.++.+.+.+.|.+.++=..+-.... .++. +-..++ ...+.+ ..+.+....++.
T Consensus 137 LLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~---~a~iiG---------iNnRdL~t~~vd~~~~~~l~ 204 (454)
T PRK09427 137 LLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL---GAKVIG---------INNRNLRDLSIDLNRTRELA 204 (454)
T ss_pred hHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC---CCCEEE---------EeCCCCccceECHHHHHHHH
Confidence 1 1355666666677766655332211000 0000 000111 111111 234455566677
Q ss_pred hhCC-CCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHHHhcCC-Cccc
Q psy16199 712 KMFP-NFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLLYLKST-QLKG 776 (842)
Q Consensus 712 ~~~~-~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m~~~g~-~i~~ 776 (842)
...| ++.+|+-+||.|++|+..+ ..||++|-||+++|.. +..-..+.+-+.....-.|. +.+|
T Consensus 205 ~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~-~d~~~~~~~L~~~~vKICGit~~ed 269 (454)
T PRK09427 205 PLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE-DDLELAVRKLILGENKVCGLTRPQD 269 (454)
T ss_pred hhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC-CCHHHHHHHHhccccccCCCCCHHH
Confidence 7665 4778999999999999886 5589999999999965 55443333333322333455 4433
No 434
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.08 E-value=0.045 Score=62.58 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=38.8
Q ss_pred HhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccCcCChhHHhhc
Q psy16199 196 WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAI 266 (842)
Q Consensus 196 ~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~~~~~~l~~~l 266 (842)
++.|++|++++.++++..++++|.++...+. .+|+..++.++.||+|+|-. .. ++.+..
T Consensus 152 ~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~----------~~g~~~~i~A~aVIlAtGG~-~~-~~~~~~ 210 (417)
T PF00890_consen 152 EEAGVDIRFNTRVTDLITEDGRVTGVVAENP----------ADGEFVRIKAKAVILATGGF-GG-ELLRQY 210 (417)
T ss_dssp HHTTEEEEESEEEEEEEEETTEEEEEEEEET----------TTCEEEEEEESEEEE----B-GG-HHHHHH
T ss_pred hhcCeeeeccceeeeEEEeCCceeEEEEEEC----------CCCeEEEEeeeEEEeccCcc-cc-cccccc
Confidence 3457788888888887767778888877742 25677789999999999976 23 444443
No 435
>PRK07588 hypothetical protein; Provisional
Probab=96.07 E-value=0.029 Score=63.52 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||||..|+-+|..|++.|.+ |+++++.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-PTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-eEEEeCCC
Confidence 499999999999999999999986 99999875
No 436
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.07 E-value=0.0077 Score=76.00 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=44.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---CH----HHHHHHHhcCcEEecCCCc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSP 208 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~~----~~~~~~~~~gV~i~~~~~v 208 (842)
++|+|||||+.|+.+|.+|++.|.+ |+|+++.+... +|. .. .+++.+.+.||++++++.+
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~-VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVD-VTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 3499999999999999999999975 99999875220 121 11 2345567789999988543
No 437
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.07 E-value=0.096 Score=54.86 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=77.0
Q ss_pred cceEEEeccCC--CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC
Q psy16199 564 SILIASIMCTY--NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP 641 (842)
Q Consensus 564 ~pvi~si~~g~--~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p 641 (842)
.||++-+-.|+ ++++..+.++++.++||++|.|- |-....+.++++++. .+||+..+.-
T Consensus 74 ~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iE------------------D~~~~~~~i~ai~~a-~i~ViaRtd~ 134 (240)
T cd06556 74 ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIE------------------GGEWHIETLQMLTAA-AVPVIAHTGL 134 (240)
T ss_pred CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEc------------------CcHHHHHHHHHHHHc-CCeEEEEeCC
Confidence 58888886553 45889999999999999999982 112445667777765 4899988743
Q ss_pred -------------------ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccc
Q psy16199 642 -------------------NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM 702 (842)
Q Consensus 642 -------------------~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~ 702 (842)
.+++..+-+++++++|+|.|.+-. +
T Consensus 135 ~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~-----------------------------------~- 178 (240)
T cd06556 135 TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMEC-----------------------------------V- 178 (240)
T ss_pred chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcC-----------------------------------C-
Confidence 123556668889999999999811 0
Q ss_pred hHHHHHHHHhhCCCCcEEEecC
Q psy16199 703 GLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 703 al~~v~~i~~~~~~ipIi~~GG 724 (842)
..+.++++.+.+ ++|++++|.
T Consensus 179 ~~e~~~~i~~~~-~~P~~~~ga 199 (240)
T cd06556 179 PVELAKQITEAL-AIPLAGIGA 199 (240)
T ss_pred CHHHHHHHHHhC-CCCEEEEec
Confidence 267788888887 699998765
No 438
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.06 E-value=0.043 Score=62.41 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.++|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~~ 35 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA-VTIIEKAQ 35 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 36799999999999999999999986 99999875
No 439
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.06 E-value=0.037 Score=62.75 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=30.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.+|+|||||..|+-+|..|.+.|.+ |+|++|++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~ 37 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIK-VKLLEQAA 37 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCc
Confidence 4599999999999999999999986 99999875
No 440
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.05 E-value=0.039 Score=63.81 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=40.2
Q ss_pred HHhcCcEEecCCCceEEEccCCcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEcccc
Q psy16199 195 AWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 255 (842)
Q Consensus 195 ~~~~gV~i~~~~~v~~v~~~~~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~ 255 (842)
+.+.|-++++.+.++.+..+++ +.+|++.+.+ +|+..++.++.||-|+|-
T Consensus 174 A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~----------tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREGG-VWGVEVEDRE----------TGETYEIRARAVVNAAGP 223 (532)
T ss_pred HHhcccchhhcceeeeeeecCC-EEEEEEEecC----------CCcEEEEEcCEEEECCCc
Confidence 4466888888888888875555 8888888753 577889999999999993
No 441
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.04 E-value=0.19 Score=54.27 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=67.0
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecC-ChhcHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTP-NITNITDIA 650 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p-~~~~~~~~a 650 (842)
.+.+.+.+.++.+.+.|+|+|-+|-+ .|.....+.+.-.++++.+++.+ ++||++-+.. +..+..+.+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~Gs---------tGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a 85 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGT---------TGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELA 85 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC---------CcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHH
Confidence 47889999999999899999988632 23344567777888888888876 6899999976 445799999
Q ss_pred HHHHHCCCCEEEEec
Q psy16199 651 KAAYEGKADGVSAIN 665 (842)
Q Consensus 651 ~~~~~~G~d~i~v~n 665 (842)
+.+++.|+|++.+..
T Consensus 86 ~~a~~~Gad~v~v~p 100 (281)
T cd00408 86 RHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHcCCCEEEECC
Confidence 999999999999954
No 442
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.03 E-value=0.17 Score=59.37 Aligned_cols=50 Identities=32% Similarity=0.601 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCC---EEEEehhhhcc
Q psy16199 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAH---AVQICSAVQNQ 751 (842)
Q Consensus 700 ~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~---~Vqv~ta~l~~ 751 (842)
.|..++.++++.+.. ++||++.||| +++++.+++.+||+ +|.+.++++..
T Consensus 429 ~~~g~~~~~~~~~~~-~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 429 KTIGLDGLREVCEAS-KLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred CCCCHHHHHHHHHcC-CCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 345678888887776 7999999999 59999999999999 99999999843
No 443
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.02 E-value=0.0075 Score=73.10 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=43.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---CHH----HHHHHHhcCcEEecCCCc
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VPE----EVQLAWEEKCEFLPFMSP 208 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~~~----~~~~~~~~gV~i~~~~~v 208 (842)
+|+|||+|+.|+.+|..|.+.|.+ |+|+++.+... .|. ..+ +.+.+.+.|+++++++.+
T Consensus 329 ~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLARNGVA-VTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 499999999999999999999986 99999865310 111 111 234456779999888654
No 444
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.99 E-value=0.013 Score=67.61 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=28.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+.+|..|++.|. +|+|+++++
T Consensus 6 vvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~ 36 (438)
T PRK07251 6 LIVIGFGKAGKTLAAKLASAGK-KVALVEESK 36 (438)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence 9999999999999999999996 499999864
No 445
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.97 E-value=0.15 Score=52.82 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=82.1
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCC-----h--hcHH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN-----I--TNIT 647 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~-----~--~~~~ 647 (842)
+.++..++++.+.++|+.+++++ . .+.++++++.+++|++..+.-+ + ....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~ 78 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTL 78 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCH
Confidence 56788999999999999998873 0 3667888888899997544311 2 1224
Q ss_pred HHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCC
Q psy16199 648 DIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDS 727 (842)
Q Consensus 648 ~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t 727 (842)
+.++.+.++|+|.|++...... .| .+ ....++++.+++. ++++++. ++.+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~----------~p-------------~~----~~~~~~i~~~~~~-~~i~vi~--~v~t 128 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP----------RP-------------DG----ETLAELVKRIKEY-PGQLLMA--DCST 128 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----------CC-------------CC----CCHHHHHHHHHhC-CCCeEEE--eCCC
Confidence 5689999999997777332100 00 00 1225667777664 4678774 6789
Q ss_pred HHHHHHHHHhCCCEEEEe
Q psy16199 728 ADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 728 ~~da~~~l~~GA~~Vqv~ 745 (842)
.+++.++..+|++.+.+.
T Consensus 129 ~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 129 LEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred HHHHHHHHHcCCCEEEcC
Confidence 999999999999998763
No 446
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.96 E-value=0.13 Score=52.02 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=86.4
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC---CccEEEEecCC-----hhcH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV---KIPFFVKLTPN-----ITNI 646 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~---~~Pv~vKl~p~-----~~~~ 646 (842)
+.+.+.++++++.+.|+|+|.++- ++++.+++.. ++||++++..+ ..+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-----------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~ 67 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-----------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVK 67 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-----------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHH
Confidence 688899999999989999999962 3344444332 58999999665 4678
Q ss_pred HHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC-CCCcEEE--ec
Q psy16199 647 TDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILG--IG 723 (842)
Q Consensus 647 ~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~-~~ipIi~--~G 723 (842)
.+.++.+.+.|+|++.+.-.... ..++ ......+.++++++.. .++|++. .-
T Consensus 68 ~~~a~~a~~~Gad~i~v~~~~~~-----------------------~~~~--~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 68 VAEVEEAIDLGADEIDVVINIGS-----------------------LKEG--DWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred HHHHHHHHHcCCCEEEEeccHHH-----------------------HhCC--CHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 89999999999999998422110 0111 0123467777888774 2588664 22
Q ss_pred CcC-CHHHHHHH----HHhCCCEEEEehhhh
Q psy16199 724 GID-SADVALQF----IQAGAHAVQICSAVQ 749 (842)
Q Consensus 724 GI~-t~~da~~~----l~~GA~~Vqv~ta~l 749 (842)
+-. +.+.+.+. ...|+++|-..++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~ 153 (201)
T cd00945 123 RGLKTADEIAKAARIAAEAGADFIKTSTGFG 153 (201)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 222 66666654 248999999887643
No 447
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.95 E-value=0.047 Score=63.47 Aligned_cols=32 Identities=31% Similarity=0.642 Sum_probs=29.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||+|+.|+++|..+.+.|.+ |+++++..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~-v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGAD-VTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCe-EEEEEccC
Confidence 599999999999999999999975 99999764
No 448
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.92 E-value=0.12 Score=56.50 Aligned_cols=84 Identities=21% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecC-ChhcHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTP-NITNITDIA 650 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p-~~~~~~~~a 650 (842)
.+.+.+.++++.+.+.|+++|-+|=+ .|.......+.-.++++.+++.+ ++||++=+.. +..+..+++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~Gs---------tGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a 96 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGT---------FGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIART 96 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc---------cccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHH
Confidence 47888999999998899999999632 23444467777788888887765 5999999874 666899999
Q ss_pred HHHHHCCCCEEEEecC
Q psy16199 651 KAAYEGKADGVSAINT 666 (842)
Q Consensus 651 ~~~~~~G~d~i~v~nt 666 (842)
+.+++.|+|++.++..
T Consensus 97 ~~A~~~Gad~vlv~~P 112 (309)
T cd00952 97 RALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHhCCCEEEECCC
Confidence 9999999999999754
No 449
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.91 E-value=0.044 Score=62.38 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLE-VLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 399999999999999999999975 99999875
No 450
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.91 E-value=0.008 Score=74.10 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=55.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc------cccC---CHH----HHHHHHhcCcEEecCCCceEEEccC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA---VPE----EVQLAWEEKCEFLPFMSPVQVDVKD 215 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~------~~~~---~~~----~~~~~~~~gV~i~~~~~v~~v~~~~ 215 (842)
+|+|||||+.|+.+|..|++.|.+ |+|+++.+.. .+|. ..+ +++.+.+.||+|++++.+..
T Consensus 433 ~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~----- 506 (752)
T PRK12778 433 KVAVIGSGPAGLSFAGDLAKRGYD-VTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK----- 506 (752)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC-----
Confidence 499999999999999999999975 9999975421 1111 111 23456677999988754310
Q ss_pred CcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 216 NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 216 ~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
.+.+.+ .....+|.||+|+|..
T Consensus 507 ----~v~~~~---------------l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 507 ----TITIEE---------------LEEEGFKGIFIASGAG 528 (752)
T ss_pred ----cCCHHH---------------HhhcCCCEEEEeCCCC
Confidence 011111 1235689999999984
No 451
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.89 E-value=0.15 Score=55.19 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHC--CCCEEEEecCCCccccCCCCCCCCCcccCCCccccC
Q psy16199 615 QDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEG--KADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYG 692 (842)
Q Consensus 615 ~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~--G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~g 692 (842)
.+++...+.++.+......-+.|=+.-. ++-.+.++.|.++ |+|.|++ |+ .-
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~ivi----------D~---------------Ah 131 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICL----------DV---------------AN 131 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEE----------EC---------------CC
Confidence 4567766777666554444444433222 2334556677766 5999988 11 11
Q ss_pred CCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEe
Q psy16199 693 GVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 693 G~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ 745 (842)
|+| ...++.|+.|++.+|+ +.+..|.|.|++++.+++.+|||+|-|+
T Consensus 132 Ghs-----~~~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 132 GYS-----EHFVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CcH-----HHHHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 232 2337889999999865 5666788999999999999999999865
No 452
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.85 E-value=0.12 Score=56.32 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCC-hhcHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPN-ITNITDIA 650 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~-~~~~~~~a 650 (842)
.+.+.+.++++.+.+.|+|+|-++=+ .|.......+.-.++++.+++.+ ++||++=...+ ..+..+++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gt---------tGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~la 92 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGT---------TGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELA 92 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC---------CccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHH
Confidence 47889999999999999999999632 23344577888888999998887 58999988665 55899999
Q ss_pred HHHHHCCCCEEEEecCCC
Q psy16199 651 KAAYEGKADGVSAINTVS 668 (842)
Q Consensus 651 ~~~~~~G~d~i~v~nt~~ 668 (842)
+.+++.|+|+|.+.....
T Consensus 93 k~a~~~Gad~il~v~PyY 110 (299)
T COG0329 93 KHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 999999999999976543
No 453
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.84 E-value=0.094 Score=56.82 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=68.1
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCChhcHHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~~~~~~~~a~ 651 (842)
.+.+.+.++++++.+.|+|+|-++=| .|.......+.-.++++.+.+.+ ++||++=+..+..+..++++
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~Gs---------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~ 88 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGG---------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQ 88 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC---------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHH
Confidence 46788999999999999999998632 23333456677777888777765 58999988777778999999
Q ss_pred HHHHCCCCEEEEecCCC
Q psy16199 652 AAYEGKADGVSAINTVS 668 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~ 668 (842)
.+++.|+|++.+.....
T Consensus 89 ~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 89 AAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHhCCCEEEECCCCC
Confidence 99999999999976543
No 454
>PRK09126 hypothetical protein; Provisional
Probab=95.82 E-value=0.05 Score=61.60 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
.|+|||||..|+-+|..|.+.|.+ |+|+++.+.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 499999999999999999999986 999998763
No 455
>PRK07190 hypothetical protein; Provisional
Probab=95.81 E-value=0.063 Score=62.67 Aligned_cols=32 Identities=31% Similarity=0.634 Sum_probs=29.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
.|+|||+|++|+-+|..|.+.|.+ |+|+++.+
T Consensus 7 dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~ 38 (487)
T PRK07190 7 DVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSD 38 (487)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 399999999999999999999986 99999775
No 456
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.80 E-value=0.05 Score=61.23 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=29.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
|+|||||..|+-+|..|++.|.+ |+|++|++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~-v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLK-IALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCE-EEEEeCCCc
Confidence 89999999999999999999975 999999863
No 457
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.79 E-value=0.088 Score=60.66 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHcC-CcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G-~~~Vtlv~r~~ 181 (842)
|||||+|..|+-+|..+++.| ++ |+|+++.+
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~-V~vlEk~~ 33 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAAN-VVLLEKMP 33 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcc-EEEEecCC
Confidence 899999999999999999999 75 99998654
No 458
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.77 E-value=0.057 Score=62.67 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+.+|..|++.|. +|+++++++
T Consensus 8 vvVIGaGpaG~~aA~~la~~G~-~v~liE~~~ 38 (461)
T PRK05249 8 LVVIGSGPAGEGAAMQAAKLGK-RVAVIERYR 38 (461)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-EEEEEeccc
Confidence 9999999999999999999996 599999853
No 459
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.77 E-value=0.012 Score=70.16 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc------ccc-------CCHHHHHHHHhcCcEEecCCCc
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIR-------AVPEEVQLAWEEKCEFLPFMSP 208 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~------~~~-------~~~~~~~~~~~~gV~i~~~~~v 208 (842)
..+|+|||+|++|+.+|..|.+.|++ |+++++.+.. .++ ..+..++.+.+.|++++.++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 34499999999999999999999985 9999876421 011 1123345567789988877543
No 460
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.069 Score=53.93 Aligned_cols=86 Identities=26% Similarity=0.357 Sum_probs=69.5
Q ss_pred HHHHHHHhhCCccEEEEecCChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCcccc
Q psy16199 622 NISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701 (842)
Q Consensus 622 ~ii~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p 701 (842)
++.+.+++.-=+||+.-.+ .++...+++++.+.|++.|=++.+ .|
T Consensus 5 ~~~~~l~~~~vI~Vlr~~~--~e~a~~~a~Ali~gGi~~IEITl~---------------------------------sp 49 (211)
T COG0800 5 KILSKLKAQPVVPVIRGDD--VEEALPLAKALIEGGIPAIEITLR---------------------------------TP 49 (211)
T ss_pred HHHHHHHHCCeeEEEEeCC--HHHHHHHHHHHHHcCCCeEEEecC---------------------------------CC
Confidence 4555666543456665544 468899999999999999999654 34
Q ss_pred chHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEE
Q psy16199 702 MGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQ 743 (842)
Q Consensus 702 ~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vq 743 (842)
.+.+.|++++++++ --+||.|=|-+++++.+++.+||+.+-
T Consensus 50 ~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 50 AALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred CHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEE
Confidence 56899999999996 569999999999999999999999873
No 461
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.76 E-value=0.048 Score=61.73 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=29.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
.|+|||||.+|+-+|..|.+.|.+ |+|+++.
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~ 34 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAGLD-VTLLERA 34 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence 399999999999999999999975 9999997
No 462
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.76 E-value=0.25 Score=53.48 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=91.2
Q ss_pred cceEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh
Q psy16199 564 SILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI 643 (842)
Q Consensus 564 ~pvi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~ 643 (842)
.|+|+++. +.+.++..+.++.+++.|+|++-+-. |... ..+.+.+.+..+.|.+.+++|+++=-.|..
T Consensus 71 ~~vi~gv~-~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~---------~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~ 138 (289)
T PF00701_consen 71 VPVIAGVG-ANSTEEAIELARHAQDAGADAVLVIP--PYYF---------KPSQEELIDYFRAIADATDLPIIIYNNPAR 138 (289)
T ss_dssp SEEEEEEE-SSSHHHHHHHHHHHHHTT-SEEEEEE--STSS---------SCCHHHHHHHHHHHHHHSSSEEEEEEBHHH
T ss_pred eEEEecCc-chhHHHHHHHHHHHhhcCceEEEEec--cccc---------cchhhHHHHHHHHHHhhcCCCEEEEECCCc
Confidence 69999996 46899999999999999999998842 5321 146778999999999999999999776622
Q ss_pred h---cHHHHHHHHHHCC-CCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhC-CCCc
Q psy16199 644 T---NITDIAKAAYEGK-ADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFP 718 (842)
Q Consensus 644 ~---~~~~~a~~~~~~G-~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~-~~ip 718 (842)
+ -..++...+.+.. +-||..+. +. +..+.++.+.. +++.
T Consensus 139 tg~~ls~~~l~~L~~~~nv~giK~s~------------------------------~~------~~~~~~~~~~~~~~~~ 182 (289)
T PF00701_consen 139 TGNDLSPETLARLAKIPNVVGIKDSS------------------------------GD------LERLIQLLRAVGPDFS 182 (289)
T ss_dssp HSSTSHHHHHHHHHTSTTEEEEEESS------------------------------SB------HHHHHHHHHHSSTTSE
T ss_pred cccCCCHHHHHHHhcCCcEEEEEcCc------------------------------hh------HHHHHHHhhhcccCee
Confidence 2 2233334444322 33333210 10 22333444443 3344
Q ss_pred EEEecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHH
Q psy16199 719 ILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYI 760 (842)
Q Consensus 719 Ii~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~ 760 (842)
+.+| +-..+...+.+|++++..+++-+. |..+.++.
T Consensus 183 -v~~G---~d~~~~~~l~~G~~G~is~~~n~~--P~~~~~i~ 218 (289)
T PF00701_consen 183 -VFCG---DDELLLPALAAGADGFISGLANVF--PELIVEIY 218 (289)
T ss_dssp -EEES---SGGGHHHHHHTTSSEEEESGGGTH--HHHHHHHH
T ss_pred -eecc---ccccccccccccCCEEEEcccccC--hHHHHHHH
Confidence 4444 333467888999999998888662 55554443
No 463
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.76 E-value=0.079 Score=63.11 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
|||||+|..|+-+|..+.+.|++ |.|+++.
T Consensus 8 VvVVG~G~AGl~AAl~Aae~G~~-V~lveK~ 37 (566)
T PRK06452 8 AVVIGGGLAGLMSAHEIASAGFK-VAVISKV 37 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCc-EEEEEcc
Confidence 99999999999999999999975 9999865
No 464
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.74 E-value=0.15 Score=55.76 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCChhcHHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~~~~~~~~a~ 651 (842)
.+.+.+.+.++.+.+.|+|+|-+|=+ .|.......+.-.++++.+++.+ ++||++=+..+..+..+.++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gs---------tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~ 95 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGG---------TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQ 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC---------CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH
Confidence 46788999999999999999999632 23333466777778888887765 58999988777778999999
Q ss_pred HHHHCCCCEEEEecCC
Q psy16199 652 AAYEGKADGVSAINTV 667 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~ 667 (842)
.+++.|+|++.+....
T Consensus 96 ~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 96 AAERAGADGILLLPPY 111 (303)
T ss_pred HHHHhCCCEEEECCCC
Confidence 9999999999997654
No 465
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.74 E-value=0.14 Score=55.67 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=68.7
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEecCChhcHHHHHH
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLTPNITNITDIAK 651 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~p~~~~~~~~a~ 651 (842)
.+.+.+.++++.+.+.|+|+|-++=+ .|.....+.+.-.++++.+++.+ ++||++=+..+..+..+.++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~Gs---------tGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~ 93 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGG---------TGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIAR 93 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCC---------CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHH
Confidence 46889999999999999999998632 23333466777778888777765 58999998877778999999
Q ss_pred HHHHCCCCEEEEecCCC
Q psy16199 652 AAYEGKADGVSAINTVS 668 (842)
Q Consensus 652 ~~~~~G~d~i~v~nt~~ 668 (842)
.+++.|+|++.++....
T Consensus 94 ~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 94 LAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHhCCCEEEECCCCC
Confidence 99999999999976543
No 466
>PRK06753 hypothetical protein; Provisional
Probab=95.73 E-value=0.059 Score=60.52 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=29.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 499999999999999999999986 99999886
No 467
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.72 E-value=0.47 Score=51.09 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=55.8
Q ss_pred HHHHhhcCcCEEEEecc-CC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh---cHHHHHHHHHHCC
Q psy16199 583 SKKTEKAGADALELNLS-CP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT---NITDIAKAAYEGK 657 (842)
Q Consensus 583 a~~~~~agaD~ielN~s-cP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~---~~~~~a~~~~~~G 657 (842)
|+.++.+|+++|-+.=+ +- ...+..|.| .-+.+.+.+.++.|.+.+++||++-+-..+. ++.+.++.++++|
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aG 106 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLG---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAG 106 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCC---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 46667789999977521 11 111222322 2567888899999999999999999855443 5667799999999
Q ss_pred CCEEEE
Q psy16199 658 ADGVSA 663 (842)
Q Consensus 658 ~d~i~v 663 (842)
+.||.+
T Consensus 107 aagi~I 112 (292)
T PRK11320 107 AAAVHI 112 (292)
T ss_pred CeEEEE
Confidence 999998
No 468
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.70 E-value=0.041 Score=63.47 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=28.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+.+|..|++.|.+ |+|+++.+
T Consensus 6 vvVIGgGpaGl~aA~~la~~g~~-V~lie~~~ 36 (441)
T PRK08010 6 AVIIGFGKAGKTLAVTLAKAGWR-VALIEQSN 36 (441)
T ss_pred EEEECCCHhHHHHHHHHHHCCCe-EEEEcCCC
Confidence 99999999999999999999975 99999864
No 469
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.70 E-value=0.49 Score=50.86 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=55.8
Q ss_pred HHHHhhcCcCEEEEeccCC-CCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh---cHHHHHHHHHHCCC
Q psy16199 583 SKKTEKAGADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT---NITDIAKAAYEGKA 658 (842)
Q Consensus 583 a~~~~~agaD~ielN~scP-~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~---~~~~~a~~~~~~G~ 658 (842)
|+.++.+|+++|-+.=++- ...+..|.| .-+.+.+.+.++.|.+.+++||++-+-..+. ++.+.++.+.++|+
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g---~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~ 102 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLG---ITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGA 102 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCC---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 4566778999998852211 111222322 1467788888999999999999999965444 56667999999999
Q ss_pred CEEEE
Q psy16199 659 DGVSA 663 (842)
Q Consensus 659 d~i~v 663 (842)
.||.+
T Consensus 103 agi~I 107 (285)
T TIGR02317 103 AAVHI 107 (285)
T ss_pred eEEEE
Confidence 99998
No 470
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.67 E-value=0.21 Score=56.04 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
+..+.++.+.++|+|.|++--| . |.| ....+.++++++.+|+++ +..|+
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a------------------------~-g~~-----~~~~~~v~~ik~~~p~~~-vi~g~ 201 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSA------------------------H-GHS-----TRIIELVKKIKTKYPNLD-LIAGN 201 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECC------------------------C-CCC-----hhHHHHHHHHHhhCCCCc-EEEEe
Confidence 3567889999999999987111 1 111 123688999999988777 45678
Q ss_pred cCCHHHHHHHHHhCCCEEEEe
Q psy16199 725 IDSADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ 745 (842)
|.|.+++.+++.+|||+|.+|
T Consensus 202 V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 202 IVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred cCCHHHHHHHHHcCCCEEEEC
Confidence 899999999999999999866
No 471
>PRK08013 oxidoreductase; Provisional
Probab=95.65 E-value=0.079 Score=60.28 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 182 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~ 182 (842)
.|+|||||.+|+-+|..|++.|.+ |+|+++.+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCCC
Confidence 499999999999999999999985 999998763
No 472
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.65 E-value=0.098 Score=62.41 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=28.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|||||+|..|+-+|..+++.|++ |.|+++..
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~~-V~lleK~~ 32 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGLN-TAVISKVY 32 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCc-EEEEeccC
Confidence 89999999999999999999975 99998653
No 473
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.62 E-value=0.29 Score=50.70 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=79.9
Q ss_pred CHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCCh-------hcHH
Q psy16199 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI-------TNIT 647 (842)
Q Consensus 575 ~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~-------~~~~ 647 (842)
+.++..++++.+.++|+.++++| + + +.++.+++.+++|++.-...++ +...
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~--~----------------~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~ 82 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN--G----------------V----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTI 82 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC--C----------------H----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCH
Confidence 46788999999999999988851 1 1 4456667778899974121111 1123
Q ss_pred HHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCC
Q psy16199 648 DIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDS 727 (842)
Q Consensus 648 ~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t 727 (842)
+.++.+.++|+|.|.+..+... .| ......++++++++.. +++++. ++.|
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~----------~p-----------------~~~~~~~~i~~~~~~g-~~~iiv--~v~t 132 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP----------RP-----------------DGETLAELIKRIHEEY-NCLLMA--DIST 132 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----------CC-----------------CCcCHHHHHHHHHHHh-CCeEEE--ECCC
Confidence 4679999999997777322110 00 0012367777777775 577765 7899
Q ss_pred HHHHHHHHHhCCCEEEEe
Q psy16199 728 ADVALQFIQAGAHAVQIC 745 (842)
Q Consensus 728 ~~da~~~l~~GA~~Vqv~ 745 (842)
.+++.++..+|++.+.+.
T Consensus 133 ~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 133 LEEALNAAKLGFDIIGTT 150 (219)
T ss_pred HHHHHHHHHcCCCEEEcc
Confidence 999999999999998653
No 474
>PRK07121 hypothetical protein; Validated
Probab=95.61 E-value=0.095 Score=61.40 Aligned_cols=31 Identities=39% Similarity=0.477 Sum_probs=28.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|||||+|..|+-+|..+++.|++ |.|+++..
T Consensus 23 VvVVGaG~AGl~AA~~aae~G~~-VillEK~~ 53 (492)
T PRK07121 23 VVVVGFGAAGACAAIEAAAAGAR-VLVLERAA 53 (492)
T ss_pred EEEECcCHHHHHHHHHHHHCCCe-EEEEeCCC
Confidence 99999999999999999999985 99998654
No 475
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.61 E-value=0.065 Score=62.42 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=28.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
.|+|||||+.|+.+|..|++.|. +|+++++.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~ 36 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGL-KTALVEKG 36 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc
Confidence 39999999999999999999996 49999975
No 476
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.60 E-value=0.046 Score=63.18 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=28.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
|+|||||+.|+.+|..+++.|.+ |+|+++.
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~~-V~lie~~ 34 (446)
T TIGR01424 5 LFVIGAGSGGVRAARLAANHGAK-VAIAEEP 34 (446)
T ss_pred EEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 99999999999999999999975 9999974
No 477
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.59 E-value=0.092 Score=57.82 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=95.4
Q ss_pred HHHHhhcCcCEEEEeccC-CCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEe-cCCh---------------hc
Q psy16199 583 SKKTEKAGADALELNLSC-PHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKL-TPNI---------------TN 645 (842)
Q Consensus 583 a~~~~~agaD~ielN~sc-P~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl-~p~~---------------~~ 645 (842)
++.+.+.|||++-+.+.- |....+-. .+..+.+.++.++.+ ..++|+++=+ ++.. .-
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~-----~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~ 185 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAIN-----DRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEK 185 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHH-----HHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccCHHH
Confidence 344566799999887642 22100000 011223444444443 3589998853 2211 13
Q ss_pred HHHHHHHHH--HCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCcc--ccchHHHHHHHHhhCCCCcEEE
Q psy16199 646 ITDIAKAAY--EGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT--RPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 646 ~~~~a~~~~--~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~--~p~al~~v~~i~~~~~~ipIi~ 721 (842)
+...++.+. +.|+|.+-+--+... ....|.-.|..+ ...+.+.++++.+.. .+|++.
T Consensus 186 V~~a~r~~~~~elGaDvlKve~p~~~------------------~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vv 246 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLKVEVPVDM------------------KFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIF 246 (340)
T ss_pred HHHHHHHHhhhccCCeEEEeeCCCCc------------------ccccccccccccccHHHHHHHHHHHHhhC-CCCEEE
Confidence 456677777 499998888221100 000110011111 222356677777776 578554
Q ss_pred -ecCcCCHHHHHHHH----HhCC--CEEEEehhhhccCchh-HHHHHHHHHHHHHhcCC-CccccC
Q psy16199 722 -IGGIDSADVALQFI----QAGA--HAVQICSAVQNQDFTV-VDDYITGLQTLLYLKST-QLKGWD 778 (842)
Q Consensus 722 -~GGI~t~~da~~~l----~~GA--~~Vqv~ta~l~~gp~~-~~~i~~~l~~~m~~~g~-~i~~~~ 778 (842)
+||+ +.++..+.+ .+|| ++|.+||++.+.+... ..+=.+.+++||...|. +|+++.
T Consensus 247 lsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~~~~~l~ 311 (340)
T PRK12858 247 LSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVANITRLN 311 (340)
T ss_pred ECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHHHHHHHH
Confidence 8887 666665544 4899 9999999999766333 22334567788888888 777664
No 478
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.58 E-value=0.63 Score=50.14 Aligned_cols=152 Identities=18% Similarity=0.109 Sum_probs=98.8
Q ss_pred cccceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec-cCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEE--
Q psy16199 562 CLSILIASIMCTY-NKDDWLELSKKTEKAGADALELNL-SCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFF-- 636 (842)
Q Consensus 562 ~~~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~-scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~-- 636 (842)
++.|||+-+-.|+ ++....+.+++++++|+.+|.|-= ..|...+..+ |..+ -+.+...+-++++++.. +.+++
T Consensus 77 ~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~-~~~l-v~~ee~~~kI~Aa~~a~~~~d~~Ii 154 (292)
T PRK11320 77 CDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRP-NKEI-VSQEEMVDRIKAAVDARTDPDFVIM 154 (292)
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCC-CCcc-cCHHHHHHHHHHHHHhccCCCeEEE
Confidence 3479999987664 788899999999999999988832 1231111111 1222 45666666666666653 34444
Q ss_pred EEec----CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHh
Q psy16199 637 VKLT----PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAK 712 (842)
Q Consensus 637 vKl~----p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~ 712 (842)
+... ..+++..+=+++..++|||.|.+.. +...+.++++.+
T Consensus 155 ARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-----------------------------------~~~~~~i~~~~~ 199 (292)
T PRK11320 155 ARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-----------------------------------MTELEMYRRFAD 199 (292)
T ss_pred EecCcccccCHHHHHHHHHHHHHcCCCEEEecC-----------------------------------CCCHHHHHHHHH
Confidence 4432 2356677778888999999999821 113777888888
Q ss_pred hCCCCcEEE---ecCcCCHHHHHHHHHhCCCEEEEehhhhcc
Q psy16199 713 MFPNFPILG---IGGIDSADVALQFIQAGAHAVQICSAVQNQ 751 (842)
Q Consensus 713 ~~~~ipIi~---~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~ 751 (842)
.+ +.|+.+ .+|-.-.-++.++-++|.+.|-.+..++..
T Consensus 200 ~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 200 AV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred hc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 87 578733 344322234666777999999988887743
No 479
>PRK13984 putative oxidoreductase; Provisional
Probab=95.58 E-value=0.021 Score=68.59 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=56.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCcc------ccC---C----HHHHHHHHhcCcEEecCCCceEEEccC
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---V----PEEVQLAWEEKCEFLPFMSPVQVDVKD 215 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~~------~~~---~----~~~~~~~~~~gV~i~~~~~v~~v~~~~ 215 (842)
+|+|||+|..|+.+|..|.+.|.+ |+++++.+... ++. . ....+.+.+.|++++.++.+..-
T Consensus 285 ~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~---- 359 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYE-VTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD---- 359 (604)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc----
Confidence 399999999999999999999975 99998775310 111 1 12234566789999888655210
Q ss_pred CcEEEEEEEeecccCCCCeeccCCceEEEECCEEEEccccC
Q psy16199 216 NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 256 (842)
Q Consensus 216 ~~v~~V~~~~~~~~~~G~~~~~~g~~~~i~~D~Vi~a~G~~ 256 (842)
+.+. .....+|.||+|+|..
T Consensus 360 -----~~~~----------------~~~~~yD~vilAtGa~ 379 (604)
T PRK13984 360 -----IPLE----------------ELREKHDAVFLSTGFT 379 (604)
T ss_pred -----CCHH----------------HHHhcCCEEEEEcCcC
Confidence 0000 0134799999999976
No 480
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.58 E-value=0.1 Score=59.17 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=28.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEee
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 180 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~ 180 (842)
|+|||||++|+-+|..|++.|.+ |.+++++
T Consensus 3 VvIVGaGpAG~~aA~~La~~G~~-V~l~E~~ 32 (388)
T TIGR02023 3 VAVIGGGPSGATAAETLARAGIE-TILLERA 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence 89999999999999999999975 9999987
No 481
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.57 E-value=0.11 Score=62.80 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=26.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEe
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFR 179 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r 179 (842)
|+|||+|..|+-+|..+++.|++ |.|++.
T Consensus 38 VlVVG~G~AGl~AAi~Aae~G~~-VilieK 66 (640)
T PRK07573 38 VIVVGTGLAGASAAATLGELGYN-VKVFCY 66 (640)
T ss_pred EEEECccHHHHHHHHHHHHcCCc-EEEEec
Confidence 99999999999999999999985 999975
No 482
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.57 E-value=0.095 Score=59.58 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 149 kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
+|+|||||+.|+-+|..|++.|.+ |.++++..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 499999999999999999999986 99999874
No 483
>KOG4175|consensus
Probab=95.56 E-value=0.26 Score=48.73 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=102.5
Q ss_pred cceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEec--cCCCC--CCCC-CCcccC--CCCHHHHHHHHHHHHhh-CCcc
Q psy16199 564 SILIASIMCTY-NKDDWLELSKKTEKAGADALELNL--SCPHG--MGER-GMGLAC--GQDPEMVRNISLWVRSS-VKIP 634 (842)
Q Consensus 564 ~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~--scP~~--~~~~-~~G~~~--~~~~~~~~~ii~~v~~~-~~~P 634 (842)
..++--+.||+ +.++-..+.+-++..|+|.|||.+ |-|-. +.-- +--.++ +.....+.++++.++.. +.+|
T Consensus 18 naLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~P 97 (268)
T KOG4175|consen 18 NALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCP 97 (268)
T ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccc
Confidence 35666667775 467788888888888999999974 44411 1100 000001 13444555555555554 6789
Q ss_pred EEEEe--cCChh-cHHHHHHHHHHCCCCEEEEecCCCc-------------cccCCCC---C--CCCCcccC-----CCc
Q psy16199 635 FFVKL--TPNIT-NITDIAKAAYEGKADGVSAINTVSG-------------LMSLSAD---G--NPWPAVGT-----KKL 688 (842)
Q Consensus 635 v~vKl--~p~~~-~~~~~a~~~~~~G~d~i~v~nt~~~-------------~~~~~~~---~--~~~p~~~~-----~~~ 688 (842)
+++-- .|-+. ..+.+.+.+.++|+.|+++..--.. ...+.+- + .++..+.. -..
T Consensus 98 IiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYv 177 (268)
T KOG4175|consen 98 IILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYV 177 (268)
T ss_pred eeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEE
Confidence 87744 22111 3456677777888887776431100 0000000 0 00000000 000
Q ss_pred cccCCCCCC--ccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 689 TTYGGVSGN--ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 689 ~~~gG~sG~--~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
-..-|..|. .+-...-.++.++++...+.|+...-||.++++..+.=.. ||+|.+|+.++
T Consensus 178 VSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 178 VSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 001111121 1222234567788888878999999999999999877666 99999999987
No 484
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.56 E-value=0.075 Score=55.13 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=68.1
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEe
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGI 722 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~ 722 (842)
..++.++|+.+.+.|+|.+.+. |++. ..| ++..+++++++++.+ |+...
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~iv---------DLd~----------------~~~---~~~n~~~i~~i~~~~---~v~vg 83 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIA---------DLDR----------------IVG---LGDNFSLLSKLSKRV---ELIAD 83 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE---------Eccc----------------ccC---CcchHHHHHHHHhhC---cEEEc
Confidence 3588999999999999999993 3321 001 344588899998874 89999
Q ss_pred cCcCCHHHHHHHHH--hCCCEEEEehhhhccCchhHHHHH
Q psy16199 723 GGIDSADVALQFIQ--AGAHAVQICSAVQNQDFTVVDDYI 760 (842)
Q Consensus 723 GGI~t~~da~~~l~--~GA~~Vqv~ta~l~~gp~~~~~i~ 760 (842)
|||+|.+|+.+++. .||+-|-++|..+ +.|.++.++.
T Consensus 84 GGirs~e~~~~~~~~l~~a~rvvigT~a~-~~p~~l~~~~ 122 (221)
T TIGR00734 84 CGVRSPEDLETLPFTLEFASRVVVATETL-DITELLRECY 122 (221)
T ss_pred CccCCHHHHHHHHhhhccceEEeecChhh-CCHHHHHHhh
Confidence 99999999999976 3799999999999 4688887664
No 485
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.55 E-value=0.36 Score=50.42 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEEEE-ecC-Chh------
Q psy16199 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFFVK-LTP-NIT------ 644 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~vK-l~p-~~~------ 644 (842)
++++.+.+ .+.++|+|++.+|.... .+.++...+..++.. ..-+.|= ++. +..
T Consensus 67 ~t~~~~i~---~~~~~gad~itvH~~ag---------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~ 128 (230)
T PRK00230 67 NTVAKAVR---ALAKLGVDMVNVHASGG---------------PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELG 128 (230)
T ss_pred ccHHHHHH---HHHHcCCCEEEEcccCC---------------HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCc
Confidence 45555444 44567999999985322 344555555544321 1122222 322 111
Q ss_pred -------cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCC
Q psy16199 645 -------NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF 717 (842)
Q Consensus 645 -------~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~i 717 (842)
.+..+++.+.+.|+|+++++.+ .+..+++..++-
T Consensus 129 ~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---------------------------------------~~~~ir~~~~~~ 169 (230)
T PRK00230 129 INLSLEEQVLRLAKLAQEAGLDGVVCSAQ---------------------------------------EAAAIREATGPD 169 (230)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEeChH---------------------------------------HHHHHHhhcCCc
Confidence 2235677788999999988211 123445554444
Q ss_pred cEEEecCcCCHH-----------HHHHHHHhCCCEEEEehhhhccC-c-hhHHHHHHHH
Q psy16199 718 PILGIGGIDSAD-----------VALQFIQAGAHAVQICSAVQNQD-F-TVVDDYITGL 763 (842)
Q Consensus 718 pIi~~GGI~t~~-----------da~~~l~~GA~~Vqv~ta~l~~g-p-~~~~~i~~~l 763 (842)
.++.++||. ++ .+.+++..||+.|.|||++.... | ..++++.+.+
T Consensus 170 ~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i 227 (230)
T PRK00230 170 FLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEI 227 (230)
T ss_pred eEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHh
Confidence 567788886 33 57788899999999999998442 2 3344444433
No 486
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.55 E-value=0.17 Score=60.10 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
-+|+|||+|.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 3499999999999999999999986 99999875
No 487
>PRK02227 hypothetical protein; Provisional
Probab=95.54 E-value=0.75 Score=47.57 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=91.0
Q ss_pred eEEEeccCCCHhHHHHHHHHHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC--C-
Q psy16199 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP--N- 642 (842)
Q Consensus 566 vi~si~~g~~~e~~~~~a~~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p--~- 642 (842)
+.+|+ .|.+|...+ ..+|+|.|++- .+.++.+|+ ..|..+++|++.+... .||...+.. .
T Consensus 3 lLvSv---r~~eEA~~A----l~~GaDiIDvK-----~P~~GaLGA---~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~ 65 (238)
T PRK02227 3 LLVSV---RNLEEALEA----LAGGADIIDVK-----NPKEGSLGA---NFPWVIREIVAAVPGR--KPVSATIGDVPYK 65 (238)
T ss_pred eeecc---CCHHHHHHH----HhcCCCEEEcc-----CCCCCCCCC---CCHHHHHHHHHHhCCC--CCceeeccCCCCC
Confidence 34555 355554443 34699999993 244444543 4677888888777643 799998852 1
Q ss_pred hhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHH----HhhCCCCc
Q psy16199 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSI----AKMFPNFP 718 (842)
Q Consensus 643 ~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i----~~~~~~ip 718 (842)
-..+..-+..+...|+|.|.+. +.|....+.+++.+..+ +...++..
T Consensus 66 p~~~~~aa~~~a~~GvDyVKvG-----------------------------l~~~~~~~~~~~~~~~v~~a~~~~~~~~~ 116 (238)
T PRK02227 66 PGTISLAALGAAATGADYVKVG-----------------------------LYGGKTAEEAVEVMKAVVRAVKDLDPGKI 116 (238)
T ss_pred chHHHHHHHHHHhhCCCEEEEc-----------------------------CCCCCcHHHHHHHHHHHHHhhhhcCCCCe
Confidence 1233444445556899999881 11111122334444333 33333566
Q ss_pred EEEecCcC-------CHHHHHHHHH-hCCCEEEEehhhhccCchhHHHH-HHHHHHHHHh
Q psy16199 719 ILGIGGID-------SADVALQFIQ-AGAHAVQICSAVQNQDFTVVDDY-ITGLQTLLYL 769 (842)
Q Consensus 719 Ii~~GGI~-------t~~da~~~l~-~GA~~Vqv~ta~l~~gp~~~~~i-~~~l~~~m~~ 769 (842)
+++++=-. ++.++.+... +|++++|+=|+.= .|-.++..+ .+.|.+|..+
T Consensus 117 vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~K-dg~~Lfd~l~~~~L~~Fv~~ 175 (238)
T PRK02227 117 VVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIK-DGKSLFDHMDEEELAEFVAE 175 (238)
T ss_pred EEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccC-CCcchHhhCCHHHHHHHHHH
Confidence 77766322 5566767665 9999999999876 565555544 2344444443
No 488
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.54 E-value=0.13 Score=53.92 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecC
Q psy16199 645 NITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGG 724 (842)
Q Consensus 645 ~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GG 724 (842)
+..++|+..+++||++|.+ +| + ...+| | +++.++.+++.+ ++||+.-..
T Consensus 62 d~~~~A~~y~~~GA~aISV-lT---------e-----------~~~F~---G------s~~~l~~v~~~v-~~PvL~KDF 110 (247)
T PRK13957 62 HPVQIAKTYETLGASAISV-LT---------D-----------QSYFG---G------SLEDLKSVSSEL-KIPVLRKDF 110 (247)
T ss_pred CHHHHHHHHHHCCCcEEEE-Ec---------C-----------CCcCC---C------CHHHHHHHHHhc-CCCEEeccc
Confidence 6889999999999999987 11 0 01111 2 278889999988 799999999
Q ss_pred cCCHHHHHHHHHhCCCEEEEehhhh
Q psy16199 725 IDSADVALQFIQAGAHAVQICSAVQ 749 (842)
Q Consensus 725 I~t~~da~~~l~~GA~~Vqv~ta~l 749 (842)
|-+..++.++..+|||+|.+--+++
T Consensus 111 Iid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 111 ILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred cCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 9999999999999999999888888
No 489
>KOG1399|consensus
Probab=95.53 E-value=0.075 Score=60.76 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=30.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 147 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 147 ~~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
..+|+|||+|.+|+-.|..|.+.|.+ |++++|.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~-v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHE-VVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCC-ceEEEecC
Confidence 45699999999999999999999986 99999876
No 490
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.53 E-value=0.83 Score=50.15 Aligned_cols=143 Identities=10% Similarity=0.196 Sum_probs=89.9
Q ss_pred HHhhcCcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecC-ChhcHHHHHHHHHHCCCCE--E
Q psy16199 585 KTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTP-NITNITDIAKAAYEGKADG--V 661 (842)
Q Consensus 585 ~~~~agaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~G~d~--i 661 (842)
.+++.|+|++.|- + ++ .++..+++.+.+ +++||++|... ++.++...++.+.+.|... |
T Consensus 104 ~l~~~~v~~~KIa--S------~~-----~~n~pLL~~~A~-----~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i 165 (329)
T TIGR03569 104 FLEDLGVPRFKIP--S------GE-----ITNAPLLKKIAR-----FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNI 165 (329)
T ss_pred HHHhcCCCEEEEC--c------cc-----ccCHHHHHHHHh-----cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcE
Confidence 3344567777772 1 12 266666555443 58999999843 5668888888999999762 4
Q ss_pred EE-ecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEEecCcCCHHHHHHHHHhCCC
Q psy16199 662 SA-INTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAH 740 (842)
Q Consensus 662 ~v-~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~~GGI~t~~da~~~l~~GA~ 740 (842)
++ +-+ .. +|. +....-++.|..+++.+ ++||..++=-....-...++++||+
T Consensus 166 ~llhC~-s~----------YP~---------------~~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 166 TLLHCT-TE----------YPA---------------PFEDVNLNAMDTLKEAF-DLPVGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred EEEEEC-CC----------CCC---------------CcccCCHHHHHHHHHHh-CCCEEECCCCccHHHHHHHHHcCCC
Confidence 44 222 11 110 11234489999999998 6999887533334555677789999
Q ss_pred EEEEehhhhc--cC--------chhHHHHHHHHHHHHHhcCC
Q psy16199 741 AVQICSAVQN--QD--------FTVVDDYITGLQTLLYLKST 772 (842)
Q Consensus 741 ~Vqv~ta~l~--~g--------p~~~~~i~~~l~~~m~~~g~ 772 (842)
.+-..-.+=. .| |.-+.+|.+.++..-...|.
T Consensus 219 iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~ 260 (329)
T TIGR03569 219 VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGD 260 (329)
T ss_pred EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 7764433321 11 66778888888776666554
No 491
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.53 E-value=0.66 Score=49.85 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=103.7
Q ss_pred ccceEEEeccCC-CHhHHHHHHHHHhhcCcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC-CccEE--E
Q psy16199 563 LSILIASIMCTY-NKDDWLELSKKTEKAGADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSV-KIPFF--V 637 (842)
Q Consensus 563 ~~pvi~si~~g~-~~e~~~~~a~~~~~agaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~-~~Pv~--v 637 (842)
+.|||+-+-.|+ ++....+.+++++++|+.+|.|-=. .|...+..+ |..+ -+.+...+-+++++++. +.+++ .
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~-g~~l-v~~ee~~~kI~Aa~~a~~~~d~~IiA 150 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLP-GKEL-VSREEMVDKIAAAVDAKRDEDFVIIA 150 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCC-Cccc-cCHHHHHHHHHHHHHhccCCCEEEEE
Confidence 479999987663 5888899999999999999888422 131111000 1112 35666666666666654 33344 4
Q ss_pred Eec----CChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhh
Q psy16199 638 KLT----PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKM 713 (842)
Q Consensus 638 Kl~----p~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~ 713 (842)
... ..+++..+=+++..++|||.|.+.. +...+.++++.++
T Consensus 151 RTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g-----------------------------------~~~~e~i~~~~~~ 195 (285)
T TIGR02317 151 RTDARAVEGLDAAIERAKAYVEAGADMIFPEA-----------------------------------LTSLEEFRQFAKA 195 (285)
T ss_pred EcCcccccCHHHHHHHHHHHHHcCCCEEEeCC-----------------------------------CCCHHHHHHHHHh
Confidence 432 2356677778888999999999821 1126677888888
Q ss_pred CCCCcEE---EecCcCCHHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHHHHH
Q psy16199 714 FPNFPIL---GIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767 (842)
Q Consensus 714 ~~~ipIi---~~GGI~t~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~~~m 767 (842)
+ +.|+. ..+|-.-.-++.++-++|.+.|..+..++.. ...-+.+.+..++
T Consensus 196 i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a---a~~a~~~~~~~l~ 248 (285)
T TIGR02317 196 V-KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA---MNKAAEAVYNEIK 248 (285)
T ss_pred c-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH---HHHHHHHHHHHHH
Confidence 8 47873 3344322235777778999999988887743 3444444444433
No 492
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.52 E-value=0.42 Score=51.76 Aligned_cols=84 Identities=25% Similarity=0.231 Sum_probs=65.1
Q ss_pred CCHhHHHHHHHHHhhc-CcCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEec-CChhcHHHH
Q psy16199 574 YNKDDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLT-PNITNITDI 649 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~a-gaD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~-p~~~~~~~~ 649 (842)
.+.+.+.++++++.+. |+++|-++-+ .|....-..+.-.++++.+++.+ ++||++=+. .+..+..+.
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~Gs---------tGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~ 88 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGS---------TGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQEL 88 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcC---------CcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHH
Confidence 4788999999999999 9999998632 12233355667777777777654 489999885 456789999
Q ss_pred HHHHHHCCCCEEEEecC
Q psy16199 650 AKAAYEGKADGVSAINT 666 (842)
Q Consensus 650 a~~~~~~G~d~i~v~nt 666 (842)
++.+++.|+|++.+...
T Consensus 89 a~~a~~~Gad~v~~~~P 105 (288)
T cd00954 89 AKHAEELGYDAISAITP 105 (288)
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 99999999999998654
No 493
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.50 E-value=0.2 Score=54.33 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=67.6
Q ss_pred CCHhHHHHHHHHHhhcC-cCEEEEeccCCCCCCCCCCcccCCCCHHHHHHHHHHHHhhC--CccEEEEec-CChhcHHHH
Q psy16199 574 YNKDDWLELSKKTEKAG-ADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSV--KIPFFVKLT-PNITNITDI 649 (842)
Q Consensus 574 ~~~e~~~~~a~~~~~ag-aD~ielN~scP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~--~~Pv~vKl~-p~~~~~~~~ 649 (842)
.+.+.+.+.++.+.+.| +|+|-++=+ .|....-+.+.-.++++.+++.+ ++||++=+. .+..+..+.
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~Gs---------tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~l 88 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGS---------TGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVEL 88 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCc---------ccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHH
Confidence 46888999999998899 999998632 23334467777788888887765 589999885 566689999
Q ss_pred HHHHHHCCCCEEEEecCC
Q psy16199 650 AKAAYEGKADGVSAINTV 667 (842)
Q Consensus 650 a~~~~~~G~d~i~v~nt~ 667 (842)
++.+++.|+|+|.+....
T Consensus 89 a~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHHhCCCEEEEeCCc
Confidence 999999999999997643
No 494
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.50 E-value=0.089 Score=61.23 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=28.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+.+|..+++.|.+ |+++++.+
T Consensus 7 vvVIG~GpaG~~aA~~aa~~G~~-V~lie~~~ 37 (471)
T PRK06467 7 VVVLGAGPAGYSAAFRAADLGLE-TVCVERYS 37 (471)
T ss_pred EEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 99999999999999999999975 99999863
No 495
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.50 E-value=0.07 Score=60.12 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=29.0
Q ss_pred EEEEcCChhHHHHHHHHHHcC-CcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G-~~~Vtlv~r~~ 181 (842)
|+|||||..|+-+|..|.+.| .+ |+|+++.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIK-IALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCce-EEEEeCCC
Confidence 899999999999999999999 86 99999875
No 496
>PRK11445 putative oxidoreductase; Provisional
Probab=95.44 E-value=0.1 Score=58.18 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=27.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCcEEEEEEeec
Q psy16199 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 181 (842)
Q Consensus 150 VvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~ 181 (842)
|+|||||+.|+-+|..|++. .+ |+++++.+
T Consensus 4 V~IvGaGpaGl~~A~~La~~-~~-V~liE~~~ 33 (351)
T PRK11445 4 VAIIGLGPAGSALARLLAGK-MK-VIAIDKKH 33 (351)
T ss_pred EEEECCCHHHHHHHHHHhcc-CC-EEEEECCC
Confidence 99999999999999999988 64 99999875
No 497
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.44 E-value=0.078 Score=53.79 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=59.0
Q ss_pred ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 642 NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
+.++..++++++.+.|+..|=++.| .|.+++.|+++++++++ -+||
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~---------------------------------tp~a~~~I~~l~~~~~~-~~vG 59 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLR---------------------------------TPAALDAIRAVAAEVEE-AIVG 59 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCC---------------------------------CccHHHHHHHHHHHCCC-CEEe
Confidence 3568899999999999999999654 34468999999988864 6899
Q ss_pred ecCcCCHHHHHHHHHhCCCEEE
Q psy16199 722 IGGIDSADVALQFIQAGAHAVQ 743 (842)
Q Consensus 722 ~GGI~t~~da~~~l~~GA~~Vq 743 (842)
.|.|.|.+++.+++++||+.+.
T Consensus 60 AGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 60 AGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred eEeCcCHHHHHHHHHcCCCEEE
Confidence 9999999999999999999874
No 498
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.42 E-value=0.07 Score=53.96 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=53.9
Q ss_pred ChhcHHHHHHHHHHCCCCEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccchHHHHHHHHhhCCCCcEEE
Q psy16199 642 NITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721 (842)
Q Consensus 642 ~~~~~~~~a~~~~~~G~d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~al~~v~~i~~~~~~ipIi~ 721 (842)
+.++..++++++.+.|+..|=++.+ .|.+++.|+++++++|+ -++|
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~---------------------------------t~~a~~~I~~l~~~~p~-~~vG 63 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLR---------------------------------TPNALEAIEALRKEFPD-LLVG 63 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETT---------------------------------STTHHHHHHHHHHHHTT-SEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecC---------------------------------CccHHHHHHHHHHHCCC-CeeE
Confidence 3568999999999999999999654 24458899999998876 5899
Q ss_pred ecCcCCHHHHHHHHHhCCCEEE
Q psy16199 722 IGGIDSADVALQFIQAGAHAVQ 743 (842)
Q Consensus 722 ~GGI~t~~da~~~l~~GA~~Vq 743 (842)
.|.|.|.+++.+++++||+.+.
T Consensus 64 AGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 64 AGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp EES--SHHHHHHHHHHT-SEEE
T ss_pred EEeccCHHHHHHHHHcCCCEEE
Confidence 9999999999999999999884
No 499
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.42 E-value=0.018 Score=66.11 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=45.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCcEEEEEEeecCc------cccC-------CHHHHHHHHhcCcEEecCCCc
Q psy16199 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA-------VPEEVQLAWEEKCEFLPFMSP 208 (842)
Q Consensus 148 ~kVvVIGgG~~g~e~A~~l~~~G~~~Vtlv~r~~~~------~~~~-------~~~~~~~~~~~gV~i~~~~~v 208 (842)
.+|+|||+|+.|+.+|..|++.|.. ||++++.+.. .+|. .+.+++.+.+.|++|+.+..+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHD-VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCe-EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 4499999999999999999999975 9999887632 1111 123456677889999988665
No 500
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.24 Score=52.32 Aligned_cols=157 Identities=18% Similarity=0.323 Sum_probs=96.2
Q ss_pred HHHHhhcCcCEEEEecc-CCCCCCCCCCcccCCCCHHHHHHHHHHHHhhCCccEEEEecCChh---cHHHHHHHHHHCCC
Q psy16199 583 SKKTEKAGADALELNLS-CPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNIT---NITDIAKAAYEGKA 658 (842)
Q Consensus 583 a~~~~~agaD~ielN~s-cP~~~~~~~~G~~~~~~~~~~~~ii~~v~~~~~~Pv~vKl~p~~~---~~~~~a~~~~~~G~ 658 (842)
|+.++++|+.+|-+.=+ +-...+..++|. ...+.+.+.++.|.+.+++||+|-+-..+. ++.+.++.++++|+
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~---~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ 107 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGI---TTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGA 107 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCcccc---ccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCc
Confidence 55667789999988522 112333444322 236788888899999999999999966555 56778888999999
Q ss_pred CEEEEecCCCccccCCCCCCCCCcccCCCccccCCCCCCccccc--hHHHHHHHHhhCCC--CcEE------EecCcCC-
Q psy16199 659 DGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM--GLKAVSSIAKMFPN--FPIL------GIGGIDS- 727 (842)
Q Consensus 659 d~i~v~nt~~~~~~~~~~~~~~p~~~~~~~~~~gG~sG~~~~p~--al~~v~~i~~~~~~--ipIi------~~GGI~t- 727 (842)
.||.+=.... ....|-+.|+.+.++ ..+-|+.+++.-++ +-|+ +.||+.+
T Consensus 108 agi~iEDq~~-------------------pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~A 168 (289)
T COG2513 108 AGIHIEDQVG-------------------PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDA 168 (289)
T ss_pred ceeeeeeccc-------------------chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHH
Confidence 9999832211 223555677777654 34445555554432 3333 3455211
Q ss_pred HHHHHHHHHhCCCEEEEehhhhccCchhHHHHHHHHH
Q psy16199 728 ADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQ 764 (842)
Q Consensus 728 ~~da~~~l~~GA~~Vqv~ta~l~~gp~~~~~i~~~l~ 764 (842)
-+-+..+.++|||++ ....+ ..+.-++++.+..+
T Consensus 169 I~Ra~AY~eAGAD~i--f~~al-~~~e~i~~f~~av~ 202 (289)
T COG2513 169 IERAQAYVEAGADAI--FPEAL-TDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHcCCcEE--ccccC-CCHHHHHHHHHhcC
Confidence 122345667999987 44444 23555555555543
Done!