RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16199
(842 letters)
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 493 bits (1272), Expect = e-160
Identities = 257/393 (65%), Positives = 308/393 (78%), Gaps = 2/393 (0%)
Query: 41 SSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPN 100
+SEIPQ+RLP+D VNFE+EL+KDLGVKI C +SLS +IT+ L+++GY A FIGIG P
Sbjct: 228 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPE 287
Query: 101 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 160
IFQGLT++ GFYTSK FLP VA SSK G+C LP ++G VIVLGAGDTAF
Sbjct: 288 PKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA--CHSPLPSIRGAVIVLGAGDTAF 345
Query: 161 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAG 220
DCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I
Sbjct: 346 DCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVA 405
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVN 280
+QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D V EA+ P+K +++ PEV+
Sbjct: 406 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVD 465
Query: 281 YTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFM 340
TM TS P VF GGD +++TTVESVNDGK A+W+IHKYIQ + +V KP LP F
Sbjct: 466 PETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFY 525
Query: 341 SHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTN 400
+ +DLVDISVE+ GLKF NPFGLASA PTT+SSM+RRAFE GWGFA+TKTFSL KD+VTN
Sbjct: 526 TPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTN 585
Query: 401 VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTA 433
VSPRIV+GTTS +YGP Q SFLNIELISEKTA
Sbjct: 586 VSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 618
Score = 424 bits (1093), Expect = e-134
Identities = 174/275 (63%), Positives = 210/275 (76%), Gaps = 1/275 (0%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
I+IASIMC+YNK+DW+ELS+K E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI
Sbjct: 636 IVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 695
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
WVR +V+IPFF KLTPN+T+I IA+AA EG ADGV+A NTVSGLM L ADG PWPAVG
Sbjct: 696 RWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVG 755
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQI 744
K TTYGGVSG A RP+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q+
Sbjct: 756 AGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQV 815
Query: 745 CSAVQNQDFTVVDDYITGLQTLLYLKS-TQLKGWDGQSPPTPVHQKGKPAYQFRDKEGKA 803
CSAVQNQDFTV+ DY TGL+ LLYLKS +L+GWDGQSP T HQKGKP + + GK
Sbjct: 816 CSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKK 875
Query: 804 IPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLP 838
+PNFG Y + R+ +I E ++ +
Sbjct: 876 LPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERK 910
Score = 131 bits (332), Expect = 2e-31
Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 3/125 (2%)
Query: 441 QAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQ 500
+ +PNFG Y + R+ +I E K+ + +R+ P + I ++KDVIG+A+Q
Sbjct: 874 KKLPNFGPYLEQRKKIIAEE---KMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQ 930
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCT 560
+ + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH VTD CTGCT
Sbjct: 931 YLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCT 990
Query: 561 LCLSI 565
LCLS+
Sbjct: 991 LCLSV 995
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 241 bits (617), Expect = 3e-73
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
+IA++ + D +K + A A+ELN+SCP+ + G A G DPE+ +
Sbjct: 100 PIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPN---VKHGGQAFGTDPEVAAALV 156
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
++ K+P +VKL+PN+T+I IAKA ADG++ INT+ G + P +
Sbjct: 157 KACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMG-VRFDLK-TRQPILA 214
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQI 744
GG+SG A +P+ LK + +A+ + PI+G+GG+ +A L+ AGA AV +
Sbjct: 215 NI----TGGLSGPAIKPVALKLIHQVAQD-VDIPIIGMGGVANAQDVLEMYMAGASAVAV 269
Query: 745 CSAVQNQDFTVVDDYITGLQTLL 767
+A D V I L L+
Sbjct: 270 GTANF-ADPFVCPKIIDKLPELM 291
Score = 85.3 bits (212), Expect = 4e-18
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 346 VDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRI 405
+SV++ GL NP AS + N G + K +L N +PR+
Sbjct: 5 NRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFG-NPTPRV 63
Query: 406 VKGTTSRHLYGPEQGSFLNIELIS 429
+ LN +
Sbjct: 64 AETA----------SGMLNAIGLQ 77
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 160 bits (406), Expect = 8e-44
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 10/206 (4%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNI 623
+ SI + + + + KK +++ + ELNLSCP+ G D E +
Sbjct: 95 PIFFSI-AGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG----EPQLAYDFEATEKL 149
Query: 624 SLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTV-SGLMSLSADGNPWPA 682
V + P VKL P ++ A ++ +N+V S L D
Sbjct: 150 LKEVFTFFTKPLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESV 208
Query: 683 VGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHA 741
V K +GG+ G +P L V + P I+G GGI++ A + + GA
Sbjct: 209 VIKPK-DGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATM 267
Query: 742 VQICSAVQNQDFTVVDDYITGLQTLL 767
+QI +A+ + + D I L+ ++
Sbjct: 268 LQIGTALHKEGPAIFDRIIKELEEIM 293
Score = 50.6 bits (122), Expect = 8e-07
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIV 406
++ KF NPF AS + + G +TK+ +L+K N PR V
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEK-REGNPLPRYV 59
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 156 bits (398), Expect = 1e-42
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 566 LIASIMCTYNKDDWLELSKK---TEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRN 622
L SI + ++ + + ++ + LELNLSCP+ G D E +R
Sbjct: 96 LFLSI-SGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPG----KPQVAYDFEAMRT 150
Query: 623 ISLWVRSSVKIPFFVKLTPNITNITDIAKAAY----EGKADGVSAINTVSGLMSLSADGN 678
V + +PF VK+ P I AA V+ +N+V + + A+ +
Sbjct: 151 YLQQVSLAYGLPFGVKMPPYFD-IAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAE-S 208
Query: 679 PWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAG 738
+ K +GG+ G P L V++ + P+ + G GG+ S + A I AG
Sbjct: 209 ESVVIKPK--QGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAG 266
Query: 739 AHAVQICSAVQNQDFTVVDDYITGLQTLL 767
A VQ+ +A+Q + + L ++
Sbjct: 267 ASMVQVGTALQEEGPGIFTRLEDELLEIM 295
Score = 47.9 bits (115), Expect = 7e-06
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 346 VDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQ 394
+ + + + F NPF A+ + +R + G V+K+ +
Sbjct: 2 MCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSA 50
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 153 bits (388), Expect = 6e-41
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 14/208 (6%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKA---GADALELNLSCPHGMGERGMGLACGQDPEMVRN 622
L S+ + + +E+ K+ LELNLSCP+ G D + +R
Sbjct: 129 LFLSM-SGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPG----KPQVAYDFDAMRQ 183
Query: 623 ISLWVRSSVKIPFFVKLTPN--ITNITDIAKAAYE-GKADGVSAINTVSGLMSLSADGNP 679
V F VK+ P + A+ E K ++ IN++ + + A+
Sbjct: 184 CLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAE-TE 242
Query: 680 WPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGA 739
+ K +GG+ G P L +++ + P I G GG+ + + A + AGA
Sbjct: 243 SVVIKPK--QGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGA 300
Query: 740 HAVQICSAVQNQDFTVVDDYITGLQTLL 767
VQ+ +A+Q + ++ + + L ++
Sbjct: 301 SMVQVGTALQEEGPSIFERLTSELLGVM 328
Score = 48.8 bits (117), Expect = 5e-06
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 337 PKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKD 396
+ M + + V + F NPF A+ T + + E+ G V+K+ +
Sbjct: 27 GQQMGRGS-MSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALR 85
Query: 397 MVTNVSPRIV 406
N +PR
Sbjct: 86 EG-NPTPRYQ 94
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 140 bits (354), Expect = 1e-36
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 10/204 (4%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKA-GADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
S++ + ++ + E + +ELNLSCP+ G + D E I
Sbjct: 131 HFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIA----YDFETTDQIL 185
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
V + P +KL P +I +AA ++ +N ++ + + + +
Sbjct: 186 SEVFTYFTKPLGIKLPPYF-DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIX 244
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQ 743
K +GG+ G+ +P L V + K P+ I+G GG+ + A + I GA VQ
Sbjct: 245 PK--NGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQ 302
Query: 744 ICSAVQNQDFTVVDDYITGLQTLL 767
I +A+ + + L ++
Sbjct: 303 IGTALHQEGPQIFKRITKELXAIM 326
Score = 69.9 bits (171), Expect = 7e-13
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 336 LPKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQK 395
+ M +V I F N A+ + + G VT T +L++
Sbjct: 26 GGQQMGRGSMVSTHTTIGSFDFDNCLMNAAGVYCMTREELAAIDHSEAGSFVTXTGTLEE 85
Query: 396 DMVTNVSPRIV 406
N PR
Sbjct: 86 RAG-NPQPRYA 95
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 131 bits (333), Expect = 7e-33
Identities = 76/305 (24%), Positives = 123/305 (40%), Gaps = 28/305 (9%)
Query: 44 IPQYRLPFDAVNFEVELVKDLGVKIECERSLST---RDITIEKLRKDGYTAIFIGIG--K 98
IP ++L V V+L+ D GV + RD ++ +LR+ + A+ + G K
Sbjct: 165 IPGFKLEKSVVERRVKLLADAGVIYHP----NFEVGRDASLPELRRK-HVAVLVATGVYK 219
Query: 99 PNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAG 156
P G + + +L + G + G V+VLG G
Sbjct: 220 ARDIKAP---G--SGLGNIVAALDYLTT-SNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 273
Query: 157 DTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDN 216
DTA DC +A+R GA V ++R+ N+ EV A EE EF+ +P D
Sbjct: 274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGF-TGDT 332
Query: 217 KIAGMQFNRTEQNEKGEW-------VEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPV 269
+ G++ R +E E + +A+ +I A G D +
Sbjct: 333 VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTV--QADLVIKALGFEPEDLPNAFDEPEL 390
Query: 270 KLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLT 329
K+ ++G V++ T T++ GVF GD + V ++ DG+ AA IH Y + K
Sbjct: 391 KVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKAEAP 450
Query: 330 VPDKP 334
V
Sbjct: 451 VAVAA 455
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 77.2 bits (191), Expect = 3e-15
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 30/170 (17%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEM-------VRNISLWVRSSVKIPFFVKLTPNI 643
AD L +N+S P+ G R + Q V +R + VK+ P++
Sbjct: 177 ADYLVVNVSSPNTAGLRSL-----QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDL 231
Query: 644 TN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRP 701
T+ DIA E DG+ NT ++S + + GG+SG +P
Sbjct: 232 TSQDKEDIASVVKELGIDGLIVTNT-----TVSRPAG----LQGALRSETGGLSG---KP 279
Query: 702 MGLKAVSSIAKMF----PNFPILGIGGIDSADVALQFIQAGAHAVQICSA 747
+ + +I +M+ PI+G+GG+ S AL+ I+AGA VQ+ +A
Sbjct: 280 LRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTA 329
Score = 34.1 bits (79), Expect = 0.20
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 350 VEICGLKFPNPFGLA 364
V + G KF NP G+A
Sbjct: 52 VRVLGHKFRNPVGIA 66
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 74.7 bits (184), Expect = 3e-14
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 632 KIPFFVKLTPNITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689
K FVKL P++ +IA E DG+ NT + + +
Sbjct: 297 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNT-----TTQINDI----KSFENKK 347
Query: 690 TYGGVSGNATRPMGLKAVSSIAKMFPN-FPILGIGGIDSADVALQFIQAGAHAVQICSA 747
GGVSG + + K + + PI+ GGI S AL+ I+AGA Q+ S
Sbjct: 348 --GGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSC 404
Score = 34.7 bits (80), Expect = 0.14
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 336 LPKFMSHIDLVDISVEICGLKFPNPFGLA 364
+ + + D + I L F NPFG+A
Sbjct: 70 ILPYDTSNDSIYACTNIKHLDFINPFGVA 98
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 72.2 bits (178), Expect = 1e-13
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 32/169 (18%)
Query: 591 ADALELNLSCPHGMGERGMGLACGQDPEMVRNI---------SLWVRSSVKIPFFVKLTP 641
A + +N+S P+ G R + Q E + ++ L +P VK+ P
Sbjct: 166 AGYIAINISSPNTPGLRTL-----QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAP 220
Query: 642 NITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNAT 699
+++ + +A + DGV A NT +L + GG+SG
Sbjct: 221 DLSEEELIQVADSLVRHNIDGVIATNT-----TLDRSLVQGMKNCDQT----GGLSG--- 268
Query: 700 RPMGLKAVSSIAKMF----PNFPILGIGGIDSADVALQFIQAGAHAVQI 744
RP+ LK+ I ++ PI+G+GGIDS A + I AGA VQI
Sbjct: 269 RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQI 317
Score = 33.6 bits (78), Expect = 0.23
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 350 VEICGLKFPNPFGLA 364
V GL F NP GLA
Sbjct: 47 VNCMGLTFKNPLGLA 61
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A*
3sfk_A*
Length = 415
Score = 70.0 bits (172), Expect = 1e-12
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 632 KIPFFVKLTPNITN--ITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689
K FVKL P++ +IA E DG+ NT + +
Sbjct: 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNT-----TTQINDIKSFENKK---- 319
Query: 690 TYGGVSGNATRPMGLKAVSSIAKMF----PNFPILGIGGIDSADVALQFIQAGAHAVQI 744
GGVSG + + I +M+ PI+ GGI S AL+ I+AGA Q+
Sbjct: 320 --GGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQL 373
Score = 34.9 bits (81), Expect = 0.091
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 336 LPKFMSHIDLVDISVEICGLKFPNPFGLA 364
+ + + D + I L F NPFG+A
Sbjct: 72 ILPYDTSNDSIYACTNIKHLDFINPFGVA 100
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 69.5 bits (170), Expect = 2e-12
Identities = 43/360 (11%), Positives = 95/360 (26%), Gaps = 80/360 (22%)
Query: 45 PQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANVI 104
P + + +D + + + +L + Y A+ +G + ++
Sbjct: 55 PDHPKIKSISKQFEKTAEDPRFRFFGNVVVG-EHVQPGELS-ERYDAVIYAVGAQSDRML 112
Query: 105 PIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKG-TVIVLGAGDTAFD 161
I E++ G + F+ E + P L G +V+G G+ A D
Sbjct: 113 NI---PGEDLPGSIAAVDFVGWY--------NAHPHFEQVSPDLSGARAVVIGNGNVALD 161
Query: 162 CATSALRC--------------------GANKVLVVFRKGCTNIRAVPEEVQ-LAWEEKC 200
A L G +V++V R+G E++ LA +
Sbjct: 162 VARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGV 221
Query: 201 EFLPFMSPVQVDVKDNKIA---------------------------GMQFNRTEQ----N 229
+ + + + ++ A +F +
Sbjct: 222 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK 281
Query: 230 EKGEWVEDEEQRIKLKANYIISAFGS---TLLDND-VLEAI--KPVKL-----DKYGYPE 278
K E + + + ++A + L V+ ++ + V D
Sbjct: 282 RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTI 341
Query: 279 VNYTTMATSVPGVFCGGDTANLSDTTVES-VNDGKTAAWHIHKYIQEKNNLTVPDKPCLP 337
N P + G + + D + + K +
Sbjct: 342 PNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPED 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 4e-11
Identities = 97/638 (15%), Positives = 169/638 (26%), Gaps = 223/638 (34%)
Query: 317 HIHKY-------IQEKNNLTVPDKPCLPKFMSHIDLVDI-----SV-------EICGLKF 357
H H + Q + + F+ + D D+ S+ I +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMS 57
Query: 358 PNP-------FG-LASAPPTTASSMVRRAFENGWGF-------------AVTKTFSLQKD 396
+ F L S V + F +T+ + Q+D
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 397 MVTNVSPRIVKGTTSR---------HLYG--PEQG-----------SFLNIELISE---K 431
+ N + K SR L P + +++ +++ +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 432 TAFIF--FFLFQAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETIL 489
F F+L N L L+KL N + I
Sbjct: 178 CKMDFKIFWL-----NLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLR-IH 228
Query: 490 SVKDVIGQAVQRVTNYTE----LDN--KKQVVALINDDMCINCGKCYMACNDSGYQA-IT 542
S++ + + + + Y L N + + ++C + +T
Sbjct: 229 SIQAEL-RRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSC------------KILLT 271
Query: 543 FHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPH 602
T VTD L A+ + D E L L
Sbjct: 272 ----TRFKQVTD----------FLSAATTTHISLDHHSMTLTPDE-----VKSLLLKY-- 310
Query: 603 GMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVS 662
+ P V + P + + IA E DG++
Sbjct: 311 ------LDCRPQDLPREVLTTN---------PRRLSI---------IA----ESIRDGLA 342
Query: 663 AINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAV-SSIAKMFP-NFPI- 719
+ W V KLTT S N P + + ++ +FP + I
Sbjct: 343 TWDN-------------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIP 388
Query: 720 ---LGI--GGIDSADVALQFIQAGAHAVQICSAV--QNQDFTVVDDYITGLQTLLYLKST 772
L + + +DV + H S V Q ++ T+ I + L +K
Sbjct: 389 TILLSLIWFDVIKSDV--MVVVNKLHKY---SLVEKQPKESTI---SIPSIYLELKVKLE 440
Query: 773 QLKGWDGQSPPTPVHQKGKPAYQFR---DKEGKAIPNFGEY---------KKI----REN 816
+H+ Y D + P +Y K I R
Sbjct: 441 NEYA---------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 817 LITE--LNL----KKLNSDGV------SLQNGLPRQLK 842
L L+ +K+ D S+ N L +QLK
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLK 528
Score = 58.3 bits (140), Expect = 8e-09
Identities = 96/713 (13%), Positives = 197/713 (27%), Gaps = 206/713 (28%)
Query: 14 DIEMSTAKVCLSKDLPDIERPVAALPDSSEIPQYRLPFDAVNFEVELVKD-LGVKIECER 72
D E + L E D ++ E + + K
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSKDAVSG 63
Query: 73 SLSTRDITIEKLRKDGYTAIFIGIGKPNANVI--PI---FQGLTEEMGFYTS-------- 119
+L + K +++ + + N + PI + + Y
Sbjct: 64 TLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 120 -----KTFLPRVATSSKKGLCGGCKKESLPILK--GTVIV---LGAGDTAFDCATSALRC 169
K + R+ K L +++L L+ V++ LG+G T A
Sbjct: 123 NQVFAKYNVSRLQPYLK--L-----RQALLELRPAKNVLIDGVLGSGKTWV--ALDVCL- 172
Query: 170 GANKVLVVFRKG--------CTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM 221
+ KV C + V E +Q Q+D +
Sbjct: 173 -SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL------------YQID-PNWTSRSD 218
Query: 222 QFNRTEQNEKGEWVEDEEQRIKLKANY----IISAFGSTLLDNDV--LEAIKPVKLD-KY 274
+ + ++ E +R+ Y ++ L +V +A L K
Sbjct: 219 HSSNIKLRI--HSIQAELRRLLKSKPYENCLLV-------LL-NVQNAKAWNAFNLSCK- 267
Query: 275 GYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKP 334
+ TT V T ++S ++ + T ++
Sbjct: 268 ----ILLTTRFKQVTDFLSAATTTHIS---LDHHSMTLT----------PDEVKSL---- 306
Query: 335 CLPKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENG---WGFAVTKTF 391
L K++ D+ E+ NP L S++ + +G W K
Sbjct: 307 -LLKYL-DCRPQDLPREVLTT---NPRRL---------SIIAESIRDGLATWDN--WKH- 349
Query: 392 SLQKDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAFIFFFLFQAIPNFGEYKK 451
+ D +T + + S +E + F +F
Sbjct: 350 -VNCDKLTTII----------------ESSLNVLEPAEYRKMFDRLSVFP------PSAH 386
Query: 452 IRENLITEL--NLKKLNSDGV--SLQN-GLPKRQINTPVETILSVKDVIGQAVQRVTNYT 506
I L++ + ++ K + V L L ++Q P E+ +S+ + + ++ N
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIYLELKVKLENEY 443
Query: 507 ELDNKKQVVALINDDMCINCGKCYMACNDS-------GY--QAITFH-PETHQAHVTDEC 556
L +++ N K + +D Y I H
Sbjct: 444 ALHRS-----IVD---HYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL- 492
Query: 557 TGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLA---- 612
++ + +LE +K + + L
Sbjct: 493 ------FRMV-------FLDFRFLE--QKIRHDS-----TAWNASGSILNTLQQLKFYKP 532
Query: 613 --CGQDPEMVRNISLWVRSSVKIPFFVKLTPNI--TNITDIAKAAYEGKADGV 661
C DP+ R ++ + F K+ N+ + TD+ + A + + +
Sbjct: 533 YICDNDPKYERLVNAILD------FLPKIEENLICSKYTDLLRIALMAEDEAI 579
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 63.5 bits (155), Expect = 1e-10
Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 54/212 (25%)
Query: 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV----QLAWEEKCEFLP 204
V+++G GD+A D L A V +V R + + + +
Sbjct: 165 RVVIVGGGDSALDWTV-GLIKNAASVTLVHRG--HEFQGHGKTAHEVERARANGTIDVYL 221
Query: 205 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLE 264
++ + + + + G + ++A+ ++ G ++ L
Sbjct: 222 ETEVASIEESNGVLTRVHLR----SSDGS-------KWTVEADRLLILIG---FKSN-LG 266
Query: 265 AIK--PVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGK---------- 312
+ ++L + V+ + M TSV G++ GD A GK
Sbjct: 267 PLARWDLELYE-NALVVD-SHMKTSVDGLYAAGDIAY---------YPGKLKIIQTGLSE 315
Query: 313 --TAAWHIHKYIQEKNNLTVPDKPCLPKFMSH 342
A H YI+ P + F S
Sbjct: 316 ATMAVRHSLSYIK-------PGEKIRNVFSSV 340
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 61.8 bits (151), Expect = 3e-10
Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 42/201 (20%)
Query: 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 208
V +LG GD+A D A L A +V ++ R+ RA V+ K L P
Sbjct: 156 RVAILGGGDSAVDWAL-MLEPIAKEVSIIHRR--DKFRAHEHSVENLHASKVNVLTPFVP 212
Query: 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIK- 267
++ + ++KI + + + K L+ + +I +G + L IK
Sbjct: 213 AEL-IGEDKIEQLVLEEVKGDRK----------EILEIDDLIVNYG---FVSS-LGPIKN 257
Query: 268 -PVKLDKYGYPEVNYTTMATSVPGVFCGGDTAN--------LSDTTVESVNDGKTAAWHI 318
+ ++K V +TM T++ G F GD S + TA +
Sbjct: 258 WGLDIEK-NSIVVK-STMETNIEGFFAAGDICTYEGKVNLIAS-----GFGEAPTAVNNA 310
Query: 319 HKYIQEKNNLTVPDKPCLPKF 339
Y+ P P
Sbjct: 311 KAYMD-------PKARVQPLH 324
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 58.4 bits (142), Expect = 3e-09
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 46/208 (22%)
Query: 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLP 204
V+++G GD+A D A L A ++ ++ R+ RA V+ E + E L
Sbjct: 154 RVLIVGGGDSAVDWAL-NLLDTARRITLIHRR--PQFRAHEASVKELMKAHEEGRLEVLT 210
Query: 205 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLE 264
+V+ D ++ + E+ + L+ + ++ G L
Sbjct: 211 PYELRRVE-GDERVRWAVVFHNQTQEE----------LALEVDAVLILAG---YITK-LG 255
Query: 265 AIK--PVKLDKYGYPEVNYTTMATSVPGVFCGGDTAN--------LSDTTVESVNDGKTA 314
+ + L+K +V+ TTMATS+PGV+ GD + + A
Sbjct: 256 PLANWGLALEK-NKIKVD-TTMATSIPGVYACGDIVTYPGKLPLIVL-----GFGEAAIA 308
Query: 315 AWHIHKYIQEKNNLTVPDKPCLPKFMSH 342
A H Y P P S
Sbjct: 309 ANHAAAYAN-------PALKVNPGHSSE 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 5e-09
Identities = 101/609 (16%), Positives = 176/609 (28%), Gaps = 219/609 (35%)
Query: 188 VPEEV-----QLAWEEKCEF---LPFMSPVQVDVKDNKIAG--------MQF--NRTEQN 229
VP QL E+ F LP P + D++ + + + E +
Sbjct: 22 VPTASFFIASQL-QEQ---FNKILP--EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 230 EKGEWVEDEEQRIKLKANYIISAFGSTLL-DNDV------LEAIKPVKLDKYGYPEVNYT 282
+ G++ + L ++ F + L ND+ L L K NY
Sbjct: 76 KVGQFDQ------VLNL--CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 283 TMATSVPGVFCGGDTANLSDTTVESVNDGKTAAW-------HIHKYIQEKNNLTVPDKPC 335
T F + L +V +G + Y +E +L
Sbjct: 128 TARIMAKRPFDKKSNSAL----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 336 LPKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENG-----W------- 383
+ DL+ S E L + F G W
Sbjct: 184 V------GDLIKFSAETL-------SELIRTTLDA-----EKVFTQGLNILEWLENPSNT 225
Query: 384 ---GFAVTKTFSL------Q--------KDMVTNVSP----RIVKGTTSRHLYGPEQG-- 420
+ ++ S Q K + +P +KG T G QG
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLGFTPGELRSYLKGAT-----GHSQGLV 278
Query: 421 ------------SFLNIELISEKTAFIFFFL----FQAIPNFGEYKKIRENLITELNLKK 464
SF K + FF+ ++A PN T L
Sbjct: 279 TAVAIAETDSWESFFVS---VRKAITVLFFIGVRCYEAYPN------------TSLPPSI 323
Query: 465 LNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQ---RVTNYTELDNKKQV-VALIN- 519
L D + G+P +P +LS+ ++ + VQ TN + L KQV ++L+N
Sbjct: 324 L-EDSLENNEGVP-----SP---MLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNG 373
Query: 520 DDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLC-LSILIASIMCTYNKDD 578
+ G P+ +L L++ + D
Sbjct: 374 AKNLVVSG----------------PPQ-------------SLYGLNLTLRKAKAPSGLDQ 404
Query: 579 W-LELSKKTEKAGADALELNLSCP-HG--MGERGMGLACGQ-DPEMVRNISLWVRSSVKI 633
+ S++ K L ++ P H + A + ++V+N + ++I
Sbjct: 405 SRIPFSER--KLKFSNRFLPVASPFHSHLLVP-----ASDLINKDLVKNNVSFNAKDIQI 457
Query: 634 PFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTY-- 691
P + + + +D+ + V I + L W T+ T+
Sbjct: 458 PVY-----DTFDGSDLRVLSGSISERIVDCI------IRLPVK---WETT-TQFKATHIL 502
Query: 692 ----GGVSG 696
GG SG
Sbjct: 503 DFGPGGASG 511
Score = 53.5 bits (128), Expect = 3e-07
Identities = 87/512 (16%), Positives = 148/512 (28%), Gaps = 211/512 (41%)
Query: 35 VAALPDSSEIPQY----RLPFDAVNFE-------------VELVKDLGVKIECERSL--- 74
V++L + S++ Q+ L FE +L+++ + + L
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 75 --STRDITIEKLRKDGYTAIFIGIGKPNANVIPIF--QGLTE----EM-GFY-TSKTF-- 122
+ R + K +A+F +G+ NA ++ IF QG T+ E+ Y T
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 123 ------------LPRVATSSKKGLCGGC-------KKE-------------SLPI----- 145
L R ++K G S P+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 146 ---------------------LKGT------VIV---LGAGDT--AF-DCATSALRCGAN 172
LKG ++ + D+ +F A+
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT---- 301
Query: 173 KVLVVFRKGC--------TNIRA------------VP-----------EEVQLAWEEKCE 201
V+F G T++ VP E+VQ +
Sbjct: 302 ---VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 202 FLPFMSPVQVDVK---DNK-IAG-----MQFNRTEQNEKGEWVEDE-----EQR-IKLKA 246
LP V++ + N ++G N T + K D+ +R +K
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 247 NYI-ISA-FGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFC---GGDTANLS 301
++ +++ F S LL A + D V++ +P V+ G D LS
Sbjct: 419 RFLPVASPFHSHLLV----PASDLINKD-LVKNNVSFNAKDIQIP-VYDTFDGSDLRVLS 472
Query: 302 DTTVESVND---GKTAAWHIHKYIQEKNNLTVPDKPCLPKFMSHIDLVDISVEICGLKFP 358
+ E + D W E T K +HI +D
Sbjct: 473 GSISERIVDCIIRLPVKW-------ET---TTQFKA------THI--LD----------- 503
Query: 359 NPFGLASAPPTTAS---SMVRRAFENGWGFAV 387
FG P AS + R + G G V
Sbjct: 504 --FG-----PGGASGLGVLTHRNKD-GTGVRV 527
Score = 49.3 bits (117), Expect = 6e-06
Identities = 50/233 (21%), Positives = 76/233 (32%), Gaps = 77/233 (33%)
Query: 83 KLRKDGYTA-IFIGIGKPNANVIPIFQGLTEEMGFYT---SKTFL-------PRVATSSK 131
++R + Y+A IF I IF+ + E YT K L P + K
Sbjct: 1683 RIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 132 ---KGLCGGCKKESLPILKGTVIVLGAG------DTAFDCATSALRCGANKVL------- 175
+ L K + L T AG +AL A+ V+
Sbjct: 1742 AAFEDL----KSKGLIPADATF----AGHSLGEY--------AALASLAD-VMSIESLVE 1784
Query: 176 VVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM---SPVQVDVKDNKIAGMQFNRTEQNEKG 232
VVF +G T AVP +E M +P +V ++ A G
Sbjct: 1785 VVFYRGMTMQVAVPR------DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 233 EWVEDEEQRIKLKANY------IISAFG--------STLLDNDVLEAIKPVKL 271
VE I NY ++A G + +L+ L+ I ++L
Sbjct: 1839 WLVE-----I---VNYNVENQQYVAA-GDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 42.7 bits (100), Expect = 5e-04
Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 79/265 (29%)
Query: 571 MCTYN-----KDDWLELSKKT-EKAGADALELNLSCP-----HGMGERGMGLACGQDPEM 619
M Y +D W + G L++ ++ P H GE+G + M
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-ENYSAM 1691
Query: 620 VRNISLWVRSSVKIPFFVKLTPNIT-----------NITDIA--------KAAYEG-KAD 659
+ + + + F ++ + T + T KAA+E K+
Sbjct: 1692 IFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 660 GV---------------SAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGL 704
G+ +A+ +++ +MS+ + V ++ Y G++ P
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIES------LV---EVVFYRGMTMQVAVPRDE 1801
Query: 705 KAVSSIAKMFPNFPILGIGGIDSADVALQFI--QAGAHAVQICSAV----QNQDFTVVDD 758
S+ M P G + ALQ++ + G + V +NQ V
Sbjct: 1802 LGRSNYG-MIAINP--GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ--QYV-- 1854
Query: 759 YITG----LQTLL----YLKSTQLK 775
G L T+ ++K ++
Sbjct: 1855 -AAGDLRALDTVTNVLNFIKLQKID 1878
Score = 33.5 bits (76), Expect = 0.43
Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 72/228 (31%)
Query: 606 ERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITD---IAKAAYEGKADGVS 662
E+GMG+ + + +++ W R F +I +I + + G G
Sbjct: 1628 EQGMGMDLYKTSKAAQDV--WNR--ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-K 1682
Query: 663 AI--NTVSGLMSLSADGNPWPAVGTKKLT------TYGGVSG--NATR---PMGLKAVSS 709
I N + + DG K++ T+ G +AT+ P L +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTLMEK 1741
Query: 710 IAKMFPNFPILGIGGIDSADVALQFIQAGAH------AVQICSAVQNQDFTVVDDYITGL 763
A F L G+ AD AG H A+ A D ++ +
Sbjct: 1742 AA-----FEDLKSKGLIPADATF----AG-HSLGEYAAL-ASLA----------DVMS-I 1779
Query: 764 QTLLYLKSTQLKGWDGQSPPTPVHQKGKPAYQF---RDKEGKAIPNFG 808
++L+ + V +G Q RD+ G++ N+G
Sbjct: 1780 ESLVEV----------------VFYRGM-TMQVAVPRDELGRS--NYG 1808
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 48.7 bits (117), Expect = 3e-06
Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 28/180 (15%)
Query: 150 VIVLGAG-DTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 208
+I++ D LV+ G + + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWS--TDLVIATNG---NELSQTIMDELSNKNIPVIT--ES 201
Query: 209 VQ-VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIK 267
++ + + + ++F RI+ +I N +E +
Sbjct: 202 IRTLQGEGGYLKKVEF-------------HSGLRIERAGGFI--VPT-FFRPNQFIEQLG 245
Query: 268 PVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVE-SVNDGKTAAWHIHKYIQEKN 326
+L G ++ TS ++ G+T +++ + + G AA I+ I ++
Sbjct: 246 -CELQSNGTFVID-DFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITDER 303
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 46.4 bits (111), Expect = 2e-05
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT----VESVNDGKTAAWHIHKYIQE 324
VKLD+ GY V+ + TSVPGV+ GD ++ +V DG AA ++
Sbjct: 262 VKLDERGYIVVD-SRQRTSVPGVYAAGD---VTSGNFAQIASAVGDGCKAALSLYSDSIS 317
Query: 325 K 325
K
Sbjct: 318 K 318
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C*
3lw5_C* 2o01_C*
Length = 80
Score = 42.1 bits (99), Expect = 3e-05
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPET-------HQAHVTDECTGCTLCLSI 565
+ D CI C +C AC + P + T++C GC C +
Sbjct: 3 TVKIYDTCIGCTQCVRACP---TDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETA 56
Score = 27.9 bits (62), Expect = 2.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 507 ELDNKKQVVALINDDMCINCGKCYMAC 533
+ Q+ + + C+ C +C AC
Sbjct: 31 DGCKAGQIASSPRTEDCVGCKRCETAC 57
Score = 27.9 bits (62), Expect = 3.7
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 547 THQAHVTDECTGCTLC 562
H + D C GCT C
Sbjct: 1 AHTVKIYDTCIGCTQC 16
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 44.5 bits (106), Expect = 4e-05
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 697 NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
+ G+ + ++ + + PI+GIGGI + A IQAGA V + SA+ +
Sbjct: 153 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAA-PVIQAGADGVSMISAISQAE 207
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 45.8 bits (108), Expect = 5e-05
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
LI+ D C C C Y+ I F+ ++ ++ ++C C
Sbjct: 211 LIDQDKCRGWRMCITGCP---YKKIYFNWKSGKS---EKCIFC 247
Score = 30.0 bits (67), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 508 LDNKKQVVALINDDMCINCGKCYMAC 533
+ + QV ++N D CI C C + C
Sbjct: 1 MKIRSQVGMVLNLDKCIGCHTCSVTC 26
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 45.4 bits (107), Expect = 5e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
L++ + C C AC Y+AI F+P + +++C C
Sbjct: 178 LVDQERCKGHRHCVEACP---YKAIYFNPVS---QTSEKCILC 214
Score = 31.9 bits (72), Expect = 0.85
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 511 KKQVVALINDDMCINCGKCYMACND 535
K+Q+V +I+ + C+ C C +AC +
Sbjct: 16 KRQLVTVIDLNKCLGCQTCTVACKN 40
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 45.2 bits (108), Expect = 6e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT---VESVNDGKTAAWHIHKYIQEK 325
++ D GY +V+ M TSVPGVF GD + + +V G AA ++Y+ EK
Sbjct: 261 IETDTNGYIKVD-EWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
Query: 326 N 326
Sbjct: 320 K 320
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 44.1 bits (105), Expect = 1e-04
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 272 DKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKN 326
+ T+ G+F GD A + + +V DG A H+ I
Sbjct: 242 PMGSTIVTD-PMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFPE 295
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 43.8 bits (104), Expect = 2e-04
Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 31/185 (16%)
Query: 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMS 207
V V+G G++ + A L V ++ ++A + + +
Sbjct: 357 RVAVIGGGNSGVEAAID-LAGIVEHVTLLEFAP--EMKADQVLQDKVRSLKNVDIILNAQ 413
Query: 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG---STLLDNDVLE 264
+V +K+ G+++ + + L ++ G +T LE
Sbjct: 414 TTEVKGDGSKVVGLEYRDRVSGD--------IHSVALAGIFV--QIGLLPNTHWLEGALE 463
Query: 265 AIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT----VESVNDGKTAAWHIHK 320
++ G ++ TSV GVF GD + + + +G A+
Sbjct: 464 ------RNRMGEIIID-AKCETSVKGVFAAGD---CTTVPYKQIIIATGEGAKASLSAFD 513
Query: 321 YIQEK 325
Y+
Sbjct: 514 YLIRT 518
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU
subunit; oxidoreductase, selenium, selenocysteine,
seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Length = 294
Score = 42.9 bits (101), Expect = 3e-04
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
+ CI CG C C + + E ++ +CT C
Sbjct: 127 DFQSENCIGCGYCIAGCP---FNIPRLNKEDNRV---YKCTLC 163
Score = 29.8 bits (67), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 509 DNKKQVVALINDDMCINCGKCYMACND 535
D K +V LI+ CI C C +AC++
Sbjct: 25 DYKAEVAKLIDVSTCIGCKACQVACSE 51
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 42.5 bits (100), Expect = 3e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
LI+ + + C Y + ++ E +V +CT C
Sbjct: 93 LIDPEKAKGKKELLDTCP---YGVMYWNEEE---NVAQKCTMC 129
Score = 29.4 bits (66), Expect = 4.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 512 KQVVALINDDMCINCGKCYMACND 535
+Q +I+ C +C C+M C D
Sbjct: 2 EQYYMVIDVAKCQDCNNCFMGCMD 25
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 42.5 bits (101), Expect = 4e-04
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT----VESVNDGKTAAWHIHKYIQE 324
V+ ++ G ++ T+V GVF GD + + + +G A+ Y+
Sbjct: 251 VERNRMGEIIID-AKCETNVKGVFAAGD---CTTVPYKQIIIATGEGAKASLSAFDYLIR 306
Query: 325 K 325
Sbjct: 307 T 307
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 42.0 bits (99), Expect = 5e-04
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 25/174 (14%)
Query: 574 YNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKI 633
++ + + E GA+AL+++L+ E M ++ I + S V +
Sbjct: 124 GSEATAAQAKEAVEMIGANALQIHLNVI---QEIVMPEGDRSFSGALKRIE-QICSRVSV 179
Query: 634 PFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGG 693
P VK + K G +A++ + G G + + +
Sbjct: 180 PVIVKEVGFGMSKASAGKLY----EAGAAAVD-IGG-----YGGTNFSKIENLRRQRQIS 229
Query: 694 VSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSA-DV----ALQFIQAGAHAV 742
+ +++ I FP ++ GG+ A DV AL GA
Sbjct: 230 FFNSWGIST-AASLAEIRSEFPASTMIASGGLQDALDVAKAIAL-----GASCT 277
Score = 32.4 bits (74), Expect = 0.63
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 337 PKFMSHIDL--VDISVEICGLKFPNPFGLASAPPTTASSM----------VRRAFENGWG 384
+ + L VDIS +I L +P + T R A + G
Sbjct: 32 HVSLPDLALEQVDISTKIGELSSSSPIFIN---AMTGGGGKLTYEINKSLARAASQAGIP 88
Query: 385 FAVTKTFSLQKDMVTNVSPRIVK 407
AV S KD +S IV+
Sbjct: 89 LAVGSQMSALKDPSERLSYEIVR 111
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B*
2vpy_B*
Length = 195
Score = 40.8 bits (96), Expect = 6e-04
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
L++ CI CG C AC Y A HP +CT C
Sbjct: 84 LVDPKKCIACGACIAACP---YDARYLHPAG----YVSKCTFC 119
Score = 28.8 bits (65), Expect = 4.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 512 KQVVALINDDMCINCGKCYMACND 535
+ I+ +C+ C C +AC
Sbjct: 2 PRYAMAIDLSLCVGCAACAVACKM 25
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 41.3 bits (98), Expect = 0.001
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 32/186 (17%)
Query: 150 VIVLGAGDTAFDCAT--SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFM 206
V VLG GDTA + A + + KV ++ R+ R P ++ A +K EFL
Sbjct: 146 VAVLGGGDTAVEEAIYLANI---CKKVYLIHRRD--GFRCAPITLEHAKNNDKIEFLTPY 200
Query: 207 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG----STLLDNDV 262
++ + ++ + T NE ++ + + +I G + +L +
Sbjct: 201 VVEEIKGDASGVSSLSIKNTATNE--------KRELVVPGFFI--FVGYDVNNAVLKQED 250
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT----VESVNDGKTAAWHI 318
+ K D+YG V+ +M T+V G+F GD + V + +DG TAA +
Sbjct: 251 NSML--CKCDEYGSIVVD-FSMKTNVQGLFAAGD---IRIFAPKQVVCAASDGATAALSV 304
Query: 319 HKYIQE 324
Y++
Sbjct: 305 ISYLEH 310
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 41.0 bits (97), Expect = 0.001
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 33/188 (17%)
Query: 150 VIVLGAGDTAFDCAT--SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFM 206
V VLG GDTA + A + + +K+ ++ R+ RA P V+ + EK E +
Sbjct: 150 VAVLGGGDTALEEALYLANI---CSKIYLIHRRD--EFRAAPSTVEKVKKNEKIELITSA 204
Query: 207 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG----STLLDNDV 262
S +V +AG++ + + + + + G + +L D
Sbjct: 205 SVDEVYGDKMGVAGVKVKL---------KDGSIRDLNVPGIFT--FVGLNVRNEILKQDD 253
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT----VESVNDGKTAAWHI 318
+ + +++ G V+ M TSV G+F GD L + + DG AA
Sbjct: 254 SKFL--CNMEEGGQVSVD-LKMQTSVAGLFAAGD---LRKDAPKQVICAAGDGAVAALSA 307
Query: 319 HKYIQEKN 326
YI+ +
Sbjct: 308 MAYIESLH 315
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 41.0 bits (97), Expect = 0.001
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 234 WVEDEEQRIKLKANYIISAFGST-LLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVF 292
+ + Q+ Y+++A G +D LE ++LDK P + T+ TSV +F
Sbjct: 251 YFDKSGQKTTESFQYVLAATGRKANVDKLGLENTS-IELDKKNSPLFDELTLQTSVDHIF 309
Query: 293 CGGD 296
GD
Sbjct: 310 VAGD 313
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 166
Score = 39.1 bits (90), Expect = 0.002
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 10/54 (18%)
Query: 516 ALINDDMCINCG-----KCYMACNDSGYQAITFHPETHQAHV--TDECTGCTLC 562
++ C C C C + PE +A + C C C
Sbjct: 2 TYVDPSKCDGCKGGEKTACMYICP---NDLMILDPEEMKAFNQEPEACWECYSC 52
Score = 34.5 bits (78), Expect = 0.056
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSIL 566
LD ++ + C C C C AIT P A + C I+
Sbjct: 30 ILDPEEMKAFNQEPEACWECYSCIKICP---QGAITARPYADFAPMGGTCIPLRGSEDIM 86
Query: 567 IASIMCTYNKDDWLELSKKTEKAGA 591
+ + +T G+
Sbjct: 87 WTIKFRNGSV-KRFKFPIRTTPEGS 110
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Length = 150
Score = 38.6 bits (89), Expect = 0.002
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDEC 556
LD +K DMC C C C AI + + C
Sbjct: 31 TLDKEKMKAYNREPDMCWECYSCVKMCP---QGAIDVRGYVDYSPLGGAC 77
Score = 38.6 bits (89), Expect = 0.002
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 516 ALINDDMCINCGK-----CYMACNDSGYQAITFHPETHQAHVTD--ECTGCTLCLSI 565
+ +N + C C C C +T E +A+ + C C C+ +
Sbjct: 3 SFVNPEKCDGCKALERTACEYICP---NDLMTLDKEKMKAYNREPDMCWECYSCVKM 56
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 39.1 bits (92), Expect = 0.002
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 650 AKAAYEGKAD--GVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAV 707
A A + AD G ++ TK+ R +GL+ +
Sbjct: 121 ALEAEKKGADYLGAGSVF----------------PTKTKE----------DARVIGLEGL 154
Query: 708 SSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
I + P++ IGGI+ + + ++ G + + SAV +
Sbjct: 155 RKIVESV-KIPVVAIGGINKDNAR-EVLKTGVDGIAVISAVMGAE 197
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 40.2 bits (94), Expect = 0.002
Identities = 21/187 (11%), Positives = 57/187 (30%), Gaps = 7/187 (3%)
Query: 148 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS 207
G +V+G ++ FD A + G+ + + T P+ +
Sbjct: 167 GQYVVIGGNESGFDAAYQLAKNGS-DIALYTS---TTGLNDPDADPSVRLSPYTRQRLGN 222
Query: 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIK 267
++ + + N + + + + I A G N +++ +
Sbjct: 223 VIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQL- 281
Query: 268 PVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNN 327
V + ++ +T P +F G T + + + + + + ++
Sbjct: 282 FVTTN--QDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREG 339
Query: 328 LTVPDKP 334
L +
Sbjct: 340 LPAKQEV 346
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 39.2 bits (92), Expect = 0.003
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 697 NATRPMGLKAVSSIAK-MFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
N + + K + ++ +GGI+ ++ + G + + N+
Sbjct: 124 NYYSTYTAEELREAQKAKIIDSKVMALGGINEDNLL-EIKDFGFGGAVVLGDLWNKF 179
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 39.8 bits (93), Expect = 0.003
Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%)
Query: 581 ELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT 640
E + ADA+ ++L+ E + + + +P VK +
Sbjct: 139 EFQDAIQMIEADAIAVHLNP---AQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKES 195
Query: 641 PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATR 700
N ++ + G+ + SG G W A+ + G + +
Sbjct: 196 GNGISMETAKLLY----SYGIKNFD-TSG-----QGGTNWIAIEMIRDIRRGNWKAESAK 245
Query: 701 PM---GLKAVSS---IAKMFPNFPILGIGGIDSA-DVALQFIQAGAHAVQIC-----SAV 748
G+ +S + P+ ++G GGI S D A + I GA + SA+
Sbjct: 246 NFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAA-KAIALGADIAGMALPVLKSAI 304
Query: 749 QNQD--FTVVDDYITGLQTLLYL 769
+ ++ I L+ + L
Sbjct: 305 EGKESLEQFFRKIIFELKAAMML 327
Score = 29.4 bits (66), Expect = 4.6
Identities = 6/63 (9%), Positives = 14/63 (22%), Gaps = 14/63 (22%)
Query: 336 LPKFMSHIDL--VDISVEICGLKFPNPFGLASAPPTTASSM---------VRRAFENGWG 384
+ + I ++ + + P + T A + G
Sbjct: 35 VHQGFPGISFSEINTKTKFFRKEISVPVMVT---GMTGGRNELGRINKIIAEVAEKFGIP 91
Query: 385 FAV 387
V
Sbjct: 92 MGV 94
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 38.4 bits (90), Expect = 0.004
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 699 TRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
G+ +S I + + P++ IGG+ + QAGA + + S + +
Sbjct: 148 LEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLR-DVKQAGADGIAVMSGIFSSA 199
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron-SULF clusters, reduction
potential; 1.65A {Escherichia coli}
Length = 85
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
AL+ CINC C C +AI+ ++ + +D+CT C
Sbjct: 1 ALLITKKCINCDMCEPECP---NEAISMGDHIYEIN-SDKCTEC 40
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 38.9 bits (91), Expect = 0.006
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDE-CTGCTLCL 563
+ D K I++ CI C C C AI + E C C CL
Sbjct: 19 KADPDKLHFVQIDEAKCIGCDTCSQYCP---TAAIFGEMGEPHSIPHIEACINCGQCL 73
Score = 30.8 bits (70), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 516 ALINDDMCINCGKCYMAC 533
++ + + CINCG+C C
Sbjct: 59 SIPHIEACINCGQCLTHC 76
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 34.2 bits (79), Expect = 0.009
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 516 ALINDDMCINCGKCYMAC-NDSGYQAITFHPETHQAHVTDECTGCTLCLSI 565
A + ++ CI+CG C C + AI+ + + D C C C +
Sbjct: 1 AYVINEACISCGACEPECPVN----AISSGDDRYVID-ADTCIDCGACAGV 46
Score = 28.0 bits (63), Expect = 1.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 518 INDDMCINCGKCYMAC 533
I+ D CI+CG C C
Sbjct: 32 IDADTCIDCGACAGVC 47
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 37.9 bits (89), Expect = 0.011
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTT----VESVNDGKTAAWHIHKYIQE 324
V L GY +V + T++P +F GD +SD SV G AA + +
Sbjct: 258 VSLRDDGYVDVR-DEIYTNIPMLFAAGD---VSDYIYRQLATSVGAGTRAAMMTERQLAA 313
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
iron-sulfur, metal-binding, transport; 1.05A
{Allochromatium vinosum} PDB: 1blu_A 3exy_A
Length = 82
Score = 34.7 bits (80), Expect = 0.011
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 516 ALINDDMCINCGKCYMAC-NDSGYQAITFHPETHQAHVTDECTGC 559
AL+ D CINC C C N AI+ ET+ CT C
Sbjct: 1 ALMITDECINCDVCEPECPNG----AISQGDETYVI-EPSLCTEC 40
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 37.9 bits (89), Expect = 0.012
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 32/155 (20%)
Query: 150 VIVLGAGDTAFDCAT--SALRCGANKVLVVFRKGCTNIRAVPEEV---QLAWEEKCEFLP 204
+ V+G GD+A + AT + A V +V R+ RA ++ + +K FL
Sbjct: 158 IAVIGGGDSAMEEATFLTRF---ARSVTLVHRRD--EFRA--SKIMLDRARNNDKIRFLT 210
Query: 205 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG---STLLDND 261
+ V V D + G++ T E + + ++ A G + L +
Sbjct: 211 NHTVVAV-DGDTTVTGLRVRDT--------NTGAETTLPVTGVFV--AIGHEPRSGLVRE 259
Query: 262 VLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
++ +D GY V T +TS+PGVF GD
Sbjct: 260 AID------VDPDGYVLVQGRTTSTSLPGVFAAGD 288
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 36.8 bits (85), Expect = 0.014
Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 31/210 (14%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG------MGERGMGLACG--QDP 617
L+ ++ +D L L++ E+ G ALE+ L G + + G+ L G + P
Sbjct: 15 LLP-LLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSP 73
Query: 618 EMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADG 677
+ ++ ++P + ++A A + + T + + A G
Sbjct: 74 KEAEAA-------LEAGAAFLVSPGLL--EEVAALAQARGVPYLPGVLTPTEVERALALG 124
Query: 678 NPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQA 737
A+ K G L+A + + FP L GGI + +
Sbjct: 125 --LSAL---KFFPAEPFQG----VRVLRAYAEV---FPEVRFLPTGGIKEEHLP-HYAAL 171
Query: 738 GAHAVQICSAVQNQDFTVVDDYITGLQTLL 767
S + + V + + LL
Sbjct: 172 PNLLAVGGSWLLQGNLEAVRAKVRAAKALL 201
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 36.2 bits (84), Expect = 0.024
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 6/46 (13%)
Query: 514 VVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
V+ + AC Y E++Q +C C
Sbjct: 101 VLFTPKTKDLEDYESVISACP---YDVPRKVAESNQM---AKCDMC 140
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 36.8 bits (85), Expect = 0.026
Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 17/165 (10%)
Query: 141 ESLPILKGTVIVLGAGDTAFDCA-TSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEK 199
+ L GT +L D +++ + + T V E + A +
Sbjct: 211 REMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR 270
Query: 200 -CEFLPFMSPVQVDVKDN--KIAGMQFNRTEQNEKGE--WVEDEEQRIKLKANYIISAFG 254
F SP QV + + AG++ T GE L ++S+ G
Sbjct: 271 AWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG 330
Query: 255 --STLLDNDV-LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
S +D V + V + G VPG++C G
Sbjct: 331 YKSRPIDPSVPFDPKLGVVPNMEGR--------VVDVPGLYCSGW 367
Score = 29.0 bits (65), Expect = 7.7
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 77 RDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLC 135
RD+T+++L+ Y A+ + G + + I EE+ G ++++ F+ GL
Sbjct: 84 RDVTVQELQDA-YHAVVLSYGAEDHQALDI---PGEELPGVFSARAFVGWYN-----GLP 134
Query: 136 GGCKKESLPILKGTVIVLGAGDTAFDCATSALR 168
+ + T ++LG G+ A D A L
Sbjct: 135 ENRELAPD-LSCDTAVILGQGNVALDVARILLT 166
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 36.8 bits (86), Expect = 0.027
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 25/153 (16%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV---QLAWEEKCEFLPFM 206
+ V+G GD+A + A L +KV ++ R+ RA ++ + K + +
Sbjct: 162 LAVIGGGDSAMEEAN-FLTKYGSKVYIIHRRD--AFRA--SKIMQQRALSNPKIDVIWNS 216
Query: 207 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG---STLLDNDVL 263
S V+ D + + + + G+ +K+ + A G +T + +
Sbjct: 217 SVVEA-YGDGERDVLGGLKVKNVVTGD-----VSDLKVSGLFF--AIGHEPATKFLDGGV 268
Query: 264 EAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
E LD GY T TSVPGVF GD
Sbjct: 269 E------LDSDGYVVTKPGTTQTSVPGVFAAGD 295
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 36.8 bits (86), Expect = 0.033
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 235 VEDEEQRIKLKANYIISAFGST-LLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFC 293
+ D ++ ++ + GS LE + ++L + Y V+ T G++
Sbjct: 260 MTDGR---TVEGSHALMTIGSVPNTSGLGLERVG-IQLGRGNYLTVD-RVSRTLATGIYA 314
Query: 294 GGD 296
GD
Sbjct: 315 AGD 317
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 36.0 bits (84), Expect = 0.040
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 27/153 (17%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV---QLAWEEKCEFLPFM 206
+ V+G GD+A + A L +KV ++ RK ++RA + + EK E L
Sbjct: 176 LAVIGGGDSACEEAQ-FLTKYGSKVFMLVRKD--HLRA--STIMQKRAEKNEKIEILYNT 230
Query: 207 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG---STLLDNDVL 263
++ + ++ T++NE+ + L + + A G +T + +
Sbjct: 231 VALEAKGDGKLLNALRIKNTKKNEETD----------LPVSGLFYAIGHTPATKIVAGQV 280
Query: 264 EAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
+ D+ GY + + TSVPG F GD
Sbjct: 281 D------TDEAGYIKTVPGSSLTSVPGFFAAGD 307
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 36.2 bits (84), Expect = 0.041
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 518 INDDMCINCGKCYMACNDS-GYQAITFHPETHQAHVT---------DECTGCTLCLS 564
++ C+ CG+C AC + A+ F + + + C C C+
Sbjct: 142 VDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCII 198
Score = 28.5 bits (64), Expect = 9.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 518 INDDMCINCGKCYMAC 533
+D C+ CG+C +AC
Sbjct: 185 FDDTNCLLCGQCIIAC 200
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 35.4 bits (81), Expect = 0.043
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 682 AVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHA 741
+GT T G + + L V ++ ++ G +S +A + I+ GA A
Sbjct: 152 IIGT---TMSGYTTPDTPEEPDLPLVKALHD--AGCRVIAEGRYNSPALAAEAIRYGAWA 206
Query: 742 VQICSAV 748
V + SA+
Sbjct: 207 VTVGSAI 213
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
potential, iron binding protein electron transport;
1.32A {Pseudomonas aeruginosa}
Length = 82
Score = 32.7 bits (75), Expect = 0.056
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
I DD CINC C C + AI+ E + + CT C
Sbjct: 3 KITDD-CINCDVCEPECPN---GAISQGEEIYVID-PNLCTEC 40
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 36.0 bits (83), Expect = 0.064
Identities = 13/66 (19%), Positives = 17/66 (25%), Gaps = 25/66 (37%)
Query: 521 DMCINCGKCYMACNDSGYQAITFHPE------------------------THQAHVTDEC 556
+ CI C +C C S + E Q + D C
Sbjct: 686 ENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLD-C 744
Query: 557 TGCTLC 562
GC C
Sbjct: 745 MGCGNC 750
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 35.1 bits (80), Expect = 0.066
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 322 IQEKNNLTVPDKPCLP---KFMSHIDLVDISV-------------EICGLKFPN-PFGLA 364
++N++ DK +P + +S ++L D E ++ P +
Sbjct: 127 EVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFS 186
Query: 365 SAPPTTASSMVRRAFENGWGF--AVTKTFSLQ 394
++ F A++K + +Q
Sbjct: 187 ENNDMDNNNDGVDELNKKCTFWDAISKLYYVQ 218
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 34.9 bits (80), Expect = 0.066
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 682 AVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF--PILGIGGIDSADVALQFIQAGA 739
+GT T +G S + + + + + ++ G + + D+ + + G
Sbjct: 142 YIGT---TLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGV 198
Query: 740 HAVQICSAV 748
H + A+
Sbjct: 199 HCSVVGGAI 207
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP:
d.58.1.1
Length = 80
Score = 32.4 bits (74), Expect = 0.072
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 516 ALINDDMCINCGKCYMAC-NDSGYQAITFHPETHQAHVTDECTGC 559
AL +D C C C C N+ AIT + +C+ C
Sbjct: 1 ALYINDDCTACDACVEECPNE----AITPGDPIYVI-DPTKCSEC 40
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 34.6 bits (80), Expect = 0.082
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 701 PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
+GL V++ + P IGGI++ + + AGA + + A+ + D
Sbjct: 177 GLGLVRVAAELGG-DDKPWFAIGGINAQRLP-AVLDAGARRIVVVRAITSAD 226
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 34.5 bits (78), Expect = 0.11
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 695 SGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
P ++ + P+ + G + S +++ +GA V A++ D
Sbjct: 208 RNEHVPPEVVRHFRKG--LGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPD 263
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 32.6 bits (74), Expect = 0.12
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 11/53 (20%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPE------THQAHVTDE--CTGCTLC 562
++ D+CI G C AC ++ +A +E C C C
Sbjct: 40 VDFDLCIADGSCINAC---PVNVFQWYDTPGHPASEKKADPVNEQACIFCMAC 89
Score = 28.7 bits (64), Expect = 2.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 518 INDDMCINCGKCYMAC 533
+N+ CI C C C
Sbjct: 78 VNEQACIFCMACVNVC 93
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 33.6 bits (77), Expect = 0.15
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 702 MGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVV 756
+G + V ++ FPN + GG++ +V ++ +AG AV + SA+ V
Sbjct: 136 VGPQFVKAMKGPFPNVKFVPTGGVNLDNVC-EWFKAGVLAVGVGSALVKGTPDEV 189
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 33.9 bits (77), Expect = 0.17
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 689 TTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
T G L V+ ++ ++ G ++ +A I+ GA AV + SA+
Sbjct: 156 TLSGYTGPITPVEPDLAMVTQLSH--AGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAI 213
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 34.1 bits (79), Expect = 0.18
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 21/91 (23%)
Query: 590 GADALELNLSCP-HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNI--TNI 646
++LN CP + + G G A +D R I +R SV F VK +
Sbjct: 83 KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEV 142
Query: 647 TDIAKAA------------------YEGKAD 659
+I + + G+A+
Sbjct: 143 EEIYRILVEEGVDEVFIHTRTVVQSFTGRAE 173
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Length = 60
Score = 30.7 bits (70), Expect = 0.18
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 518 INDDMCINCGKCYMAC------NDSGYQAITFHPETHQAHVTDECTGC-TLCLSI 565
++ D CI CG C C D G A PET D C T +S+
Sbjct: 5 VDADACIGCGVCENLCPDVFQLGDDGK-AKVLQPETDLPCAKDAADSCPTGAISV 58
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 34.2 bits (79), Expect = 0.20
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 577 DDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVR-NISLWVRSSVKIPF 635
+ +EL++ E AGA +N G E + P ++ ++ V +P
Sbjct: 228 AETVELAQAIEAAGATI--INTGI--GWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPL 283
Query: 636 FVKLTPNITNITDIAKAAYEGKADGVS 662
T I + G AD VS
Sbjct: 284 VT--TNRINDPQVADDILSRGDADMVS 308
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 33.3 bits (76), Expect = 0.21
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 9/125 (7%)
Query: 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPW-PAVGTKKLTTYGGVSG----- 696
+ + A G V+ + P P V G
Sbjct: 76 VLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVK 135
Query: 697 --NATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFT 754
A G+K + ++ + I+ GGI ++ ++ S +
Sbjct: 136 FFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIR-DYLAIPNIVACGGSWFVEKKLI 194
Query: 755 VVDDY 759
+++
Sbjct: 195 QSNNW 199
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 34.0 bits (79), Expect = 0.22
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 235 VEDEEQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFC 293
V + +LKA ++ A G + ++ L+ V L V+ M T+V ++
Sbjct: 249 VTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAG-VALTDRKAIGVD-DYMRTNVGHIYA 306
Query: 294 GGD 296
GD
Sbjct: 307 IGD 309
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.23
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 461 NLKKLNSDGVSLQ----NGLPKRQINTPVE 486
LKKL + SL+ + P I +E
Sbjct: 21 ALKKLQA---SLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 3.0
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 41/70 (58%)
Query: 238 EEQRIKLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDT 297
E+Q +K K L+A L Y + S P
Sbjct: 18 EKQALK-K-----------------LQA----SLKLYA-DD--------SAPA------- 39
Query: 298 ANLS-DTTVE 306
L+ T+E
Sbjct: 40 --LAIKATME 47
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei
unknown function, MLTA, bacteria autolysis,
peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB:
2bh0_A
Length = 208
Score = 32.9 bits (75), Expect = 0.26
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 15/61 (24%)
Query: 505 YTELDNKKQVVALINDDM------CINCGKCYMACNDSGYQAITFHPETHQAHVTDECTG 558
+ + ++ A+ D+ G G +VTD
Sbjct: 25 LDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKG---------KTTVYVTDLYPE 75
Query: 559 C 559
Sbjct: 76 G 76
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 32.9 bits (76), Expect = 0.44
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 220 GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG----STLLDNDVLEAIKPVKLDKYG 275
Q ++ + + +L+A+ ++ A G + L L+A V ++ G
Sbjct: 236 HTQASQVAHMDGEFVLTTTHG--ELRADKLLVATGRTPNTRSLA---LDAAG-VTVNAQG 289
Query: 276 YPEVNYTTMATSVPGVFCGGD 296
++ M TS P ++ GD
Sbjct: 290 AIVID-QGMRTSNPNIYAAGD 309
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 32.1 bits (73), Expect = 0.49
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 10/122 (8%)
Query: 647 TDIAKAAYEGKADGVSAINTVSGLMSLSADGN--PWPAVGTKKLTTYGGVSGN------- 697
E A + L+ + +G P + T G G
Sbjct: 78 PQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFP 137
Query: 698 ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVD 757
A G+KA+ +IA F GGI A+ ++ + S + D
Sbjct: 138 AEANGGVKALQAIAGPFSQVRFCPTGGISPANYR-DYLALKSVLCIGGSWLVPADALEAG 196
Query: 758 DY 759
DY
Sbjct: 197 DY 198
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 32.7 bits (75), Expect = 0.50
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 220 GMQFN------RTEQNEKGE----WVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPV 269
GM+ R E++ G ++++ +++ G ++ + + +
Sbjct: 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILG-L 327
Query: 270 KLDKYGYPEVNYTTMATSVPGVFCGGD 296
L G VN + TSVP V+ GD
Sbjct: 328 DLGPKGEVLVN-EYLQTSVPNVYAVGD 353
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 32.9 bits (76), Expect = 0.52
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 201 EFLPFMSP------VQVDVKDNKIAGMQFN------RTEQNEKGEWV--EDEEQRIKLKA 246
E + + K K G++ E+ E G V E + + A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 247 NYIISAFG----STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
+Y++ G + L LE I +K+ G EV+ TSVP +F GD
Sbjct: 260 DYVLVTVGRRPNTDELG---LEQIG-IKMTNRGLIEVD-QQCRTSVPNIFAIGD 308
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 32.5 bits (75), Expect = 0.62
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 201 EFLP-FMSPVQVDV-----KDNKIAGMQF------NRTEQNEKGEWV--EDEEQRIKLKA 246
E + F+ V V K G++ TE K V D E
Sbjct: 210 EAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAF 269
Query: 247 NYIISAFG----STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
+ +I A G +T L V LD+ G+ V+ ATSVPGV+ GD
Sbjct: 270 DKLIVAVGRRPVTTDLL---AADSG-VTLDERGFIYVD-DYCATSVPGVYAIGD 318
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 32.5 bits (75), Expect = 0.62
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 235 VEDEEQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFC 293
+E E L+A+ ++ A G + LE + D+ G V+ + T VP ++
Sbjct: 245 LEGGE---VLEADRVLVAVGRRPYTEGLSLENAG-LSTDERGRIPVD-EHLRTRVPHIYA 299
Query: 294 GGD 296
GD
Sbjct: 300 IGD 302
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 32.1 bits (73), Expect = 0.66
Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 40/168 (23%)
Query: 587 EKAGADALELNLSCP----HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642
L+++++ GER + + +++PF +K
Sbjct: 165 RDLQPLFLQVHINLMQELLMPEGER--------EFRSWKKHLSDYAKKLQLPFILKEVGF 216
Query: 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM 702
++ I A GV ++ +SG G + + G + +
Sbjct: 217 GMDVKTIQTAI----DLGVKTVD-ISG-----RGGTSFAYI-----ENRRGGNRSYLNQW 261
Query: 703 GLKAVSSI---AKMFPNFPILGIGGIDSA-DV----ALQFIQAGAHAV 742
G + + IL GGI D+ L GA AV
Sbjct: 262 GQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVL-----GAKAV 304
Score = 29.4 bits (66), Expect = 5.1
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 317 HIHKYIQEKNNLTVPDKPCL-PKFMSHIDL--VDISVEICGLKFPNPFGLASAPPTTASS 373
HI + ++ D L + DL +D+S G F PF + T S
Sbjct: 42 HIKYALDYRSPYNSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYIN---AMTGGS 98
Query: 374 M---------VRRAFENGWGFAV 387
+ A G F
Sbjct: 99 QKGKEVNEKLAQVADTCGLLFVT 121
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 31.4 bits (71), Expect = 0.83
Identities = 25/205 (12%), Positives = 52/205 (25%), Gaps = 29/205 (14%)
Query: 566 LIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHG------MGERGMGLACG----Q 615
LI ++ + + ++K G LE+ L G + + G
Sbjct: 15 LIP-VIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVC 73
Query: 616 DPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSA 675
+ + + P + GV+ + V
Sbjct: 74 TADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGI 133
Query: 676 DG-NPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQF 734
+PA G G K + + + FP+ GGI + ++
Sbjct: 134 TQLKCFPA----------SAIG------GAKLLKAWSGPFPDIQFCPTGGISKDNYK-EY 176
Query: 735 IQAGAHAVQICSAVQNQDFTVVDDY 759
+ S + + D+
Sbjct: 177 LGLPNVICAGGSWLTESKLLIEGDW 201
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 31.4 bits (71), Expect = 0.91
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 11/126 (8%)
Query: 643 ITNITDIAKAAYEGKADGVSAINTVSGL--MSLSADGNPWPAVGTKKLTTYGGVSGN--- 697
I N A AA E A V + + P V G
Sbjct: 93 ILNGEQ-ALAAKEAGATFVVSPGFNPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTL 151
Query: 698 ----ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDF 753
A G+ V S+ + + ++ GGI +++ ++ + + ++
Sbjct: 152 KFFPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNID-NYLAIPQVLACGGTWMVDKKL 210
Query: 754 TVVDDY 759
++
Sbjct: 211 VTNGEW 216
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
geometry of [4Fe-4S] cluster, electron transport; 0.92A
{Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
1ir0_A 1wtf_A*
Length = 81
Score = 29.4 bits (66), Expect = 1.00
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 518 INDDMCINCGKCYMAC------NDSGY--------QAITFHPETHQAHVTDECTGC-TLC 562
++ + CI CG C A ++ G Q I P+ + D GC T
Sbjct: 6 VDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDS 65
Query: 563 LSI 565
+ +
Sbjct: 66 IKV 68
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 31.2 bits (70), Expect = 1.1
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 141 ESLPI---LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAW 196
+SL + LK ++++G G+ + G K+ +V +I +
Sbjct: 3 KSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNK 61
Query: 197 EEK 199
++
Sbjct: 62 DQP 64
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 31.6 bits (72), Expect = 1.2
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 260 NDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319
N L+ P +D G+ + ++ V+ GD +++ K
Sbjct: 271 NPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT--------VPKLGY-LAV 321
Query: 320 K 320
Sbjct: 322 M 322
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 31.4 bits (72), Expect = 1.2
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 201 EFLP-FMSPVQVDV-----KDNKIAGMQF------NRTEQNEKGEWVEDE----EQRIKL 244
EFL + + +V + G+ F ++ G V E + L
Sbjct: 228 EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTL 287
Query: 245 KANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
A ++ A G D L V LD G E++ TS+ GV+ GD
Sbjct: 288 DAEVVLIATGRKPSTDGLGLAKAG-VVLDSRGRVEID-RHFQTSIAGVYAIGD 338
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 31.3 bits (72), Expect = 1.3
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 27/118 (22%)
Query: 201 EFLP-FMSPVQVDV-----KDNKIAGMQFN------RTEQNEKGEWVE------DEEQRI 242
EF P + + +V K K G+ F ++N+ VE ++
Sbjct: 213 EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQE 272
Query: 243 KLKANYIISAFG----STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
L+A ++ A G L E I +++DK G ++ + P + GD
Sbjct: 273 NLEAEVLLVAVGRRPYIAGLG---AEKIG-LEVDKRGRLVID-DQFNSKFPHIKVVGD 325
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 30.9 bits (71), Expect = 1.6
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 38/162 (23%)
Query: 150 VIVLGAGDTAFDCAT--SALRCGANKVLVVFRKGCTNIRAVPEEV------QLAWEEKCE 201
V V+G G+TA + A S + A++V ++ R+ RA E++
Sbjct: 148 VAVIGGGNTAVEEALYLSNI---ASEVHLIHRRD--GFRA--EKILIKRLMDKVENGNII 200
Query: 202 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG---STLL 258
+ +V + G+ R + + +E + + ++ A G +T +
Sbjct: 201 LHTNRTLEEVTGDQMGVTGV---RLRDTQNSDNIES----LDVAGLFV--AIGHSPNTAI 251
Query: 259 DNDVLEAIKPVKLDKYGY----PEVNYTTMATSVPGVFCGGD 296
LE L+ GY ++ TS+PGVF GD
Sbjct: 252 FEGQLE------LEN-GYIKVQSGIHGNATQTSIPGVFAAGD 286
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 31.1 bits (71), Expect = 1.8
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 226 TEQNEKGEWVEDEEQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPEVNYTTM 284
+ ++K + + RI +++I G S +N LE + V+ + Y V+
Sbjct: 244 KKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLN-VETNN-NYIVVD-ENQ 300
Query: 285 ATSVPGVFCGGD-TANLSDTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCL 336
TSV ++ GD +E +N K + +E + L
Sbjct: 301 RTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQL 353
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.7 bits (69), Expect = 1.8
Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 13/156 (8%)
Query: 52 DAVNFEVELVKDLGV--KIECERSLSTRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQG 109
DA+ + + G I S+ + IEK ++ GI N
Sbjct: 60 DAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNH--CVVYSGISNTYLNQCMKKTN 117
Query: 110 LTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC 169
T + +++ + + I V VLG G A
Sbjct: 118 RTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAAL 177
Query: 170 GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 205
GA KV V R+ + + E E
Sbjct: 178 GA-KVKVGARE--------SDLLARIAEMGMEPFHI 204
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 30.2 bits (68), Expect = 1.9
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 701 PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAH 740
P +++ +I + + ++G G + + + G
Sbjct: 43 PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQ 82
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 30.9 bits (71), Expect = 2.0
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 218 IAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGY 276
E++ +G + ++ + +I A G + + LEA +++ G
Sbjct: 225 HLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAG-IEVQSNGM 283
Query: 277 PEVNYTTMATSVPGVFCGGD 296
+ T+VPGV+ GD
Sbjct: 284 VPTD-AYQNTNVPGVYALGD 302
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 30.3 bits (68), Expect = 2.0
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 689 TTYGGVSGN--ATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICS 746
TT G + + + ++ K ++ G I S + A + G + +
Sbjct: 159 TTLSGYTPYSRQEAGPDVALIEALCK--AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGG 216
Query: 747 AV 748
A+
Sbjct: 217 AI 218
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reactio intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 30.6 bits (70), Expect = 2.1
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 29 PDIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVK 67
PD +P+ +LP R + + + + G++
Sbjct: 41 PDDIQPITSLPG-----VARYGVKRLEEMLRPLVEEGLR 74
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 30.6 bits (70), Expect = 2.2
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 226 TEQNEKGEWVEDE----EQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPEVN 280
+ + G + E ++ ++A+ ++ + G + L+ I V+ DK G VN
Sbjct: 244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIG-VETDKLGRILVN 302
Query: 281 YTTMATSVPGVFCGGD 296
+T+V GV+ GD
Sbjct: 303 -ERFSTNVSGVYAIGD 317
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer
sandwich, unknown function; 2.50A {Streptococcus mutans}
Length = 311
Score = 30.6 bits (70), Expect = 2.2
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 28/131 (21%)
Query: 92 IFIGIGKPNANVI----PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILK 147
+ G + + + + +K + +S KG G
Sbjct: 15 VPRGSHMASMTGGQQMGRGSMIIDDLL----TKKIIKPRPLNSHKGTFG----------- 59
Query: 148 GTVIVLGAGDT-----AFDCATSALRCGANKVLVVFRKGCTNI--RAVPEEVQLAWEEKC 200
V+++G G+ A + + GA V V K +PE + EK
Sbjct: 60 -RVLLIG-GNYPYGGAIIMAALACVNSGAGLVTVATHKDNITALHSHLPEAMAFDMVEKD 117
Query: 201 EFLPFMSPVQV 211
++ V
Sbjct: 118 RLSEQITAADV 128
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 30.6 bits (70), Expect = 2.4
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 29 PDIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVK 67
PD + +LP+ R+ + + ++ + G++
Sbjct: 51 PDDFTEIDSLPN-----INRIGVNRLKDYLKPLVAKGLR 84
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 30.6 bits (70), Expect = 2.4
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 25/116 (21%)
Query: 201 EFLP-FMSPVQVDV-----KDNKIAGMQFN------RTEQNEKGEWVEDE----EQRIKL 244
E++P + + + + G++ E+ + G V E + ++
Sbjct: 199 EYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEV 258
Query: 245 KANYIISAFG----STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
+ ++ A G + L LE VK+D+ G+ VN M TSVPGV+ GD
Sbjct: 259 VVDKVLVAVGRKPRTEGLG---LEKAG-VKVDERGFIRVN-ARMETSVPGVYAIGD 309
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 30.5 bits (70), Expect = 2.4
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 27/118 (22%)
Query: 201 EFLPFMSPVQVDV-------KDNKIAGMQFN------RTEQNEKGE---WVEDEE--QRI 242
EFL + V +D+ + + G +F + G+ +E +
Sbjct: 208 EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAE 267
Query: 243 KLKANYIISAFG----STLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
+ + ++ G + L LE + ++LD G VN T T +P ++ GD
Sbjct: 268 VITCDVLLVCIGRRPFTKNLG---LEELG-IELDPRGRIPVN-TRFQTKIPNIYAIGD 320
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 30.3 bits (68), Expect = 2.6
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 8/59 (13%)
Query: 335 CLPKFMSHIDLVDISVEICGLKFPNPFGLAS----APPTTA--SSMVRRAFENGWGFAV 387
L + VD++ G PF + + ++ A G G +
Sbjct: 37 ALAGL--ALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMML 93
Score = 29.2 bits (65), Expect = 5.8
Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 30/206 (14%)
Query: 575 NKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIP 634
+ +L + E ADAL +++ +RG G L + P
Sbjct: 130 RRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVER------LAELLPLPFP 183
Query: 635 FFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGV 694
VK + + ++A++ V+G A G W V +G V
Sbjct: 184 VMVKEVGHGLSREAALALR----DLPLAAVD-VAG-----AGGTSWARVEE--WVRFGEV 231
Query: 695 SGNATRPMGLKAVSSI---AKMFPNFPILGIGGI-DSADVALQFIQAGAHAVQIC----- 745
+G+ +I ++ P+ P++ GG+ D A + + GA + +
Sbjct: 232 RHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGA-KALALGADLLAVARPLLR 290
Query: 746 SAVQNQD--FTVVDDYITGLQTLLYL 769
A++ + + DY+ L+T L+
Sbjct: 291 PALEGAERVAAWIGDYLEELRTALFA 316
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.7 bits (69), Expect = 2.6
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 286 TSVPGVFCGGDTANLS--DTTVESVNDGKTAAWHIHKYIQEKNNLTVPDKPCLPKFMSHI 343
T+V G++ D S + S +G+ + ++ + + + + I
Sbjct: 450 TTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDHKDFKPEFVETAEELKTLI 509
Query: 344 D 344
Sbjct: 510 Y 510
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 27.8 bits (62), Expect = 2.6
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCL 563
++ D CI C C A PE +A+V D +
Sbjct: 6 VDQDECIACESCVEIAPG----AFAMDPEIEKAYVKDVEGASQEEV 47
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.4 bits (69), Expect = 2.8
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVV 177
V+V+GAG F+ + +A + GA V++V
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGA-NVILV 150
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 30.2 bits (69), Expect = 2.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
E V + G+ EV+ M T+VP ++ GD
Sbjct: 293 AEKAG-VAVTDRGFIEVD-KQMRTNVPHIYAIGD 324
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
biosynthesis, ALAD, porphyrin biosynt heme
biosynthesis, lyase; 2.6A {Prosthecochloris
vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Length = 328
Score = 30.2 bits (69), Expect = 3.2
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 30 DIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVK 67
+ V+++P +R D E + + DLG++
Sbjct: 47 NAVEEVSSMPG-----SFRFTIDRAVEECKELYDLGIQ 79
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 30.2 bits (69), Expect = 3.2
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 216 NKIAGMQF------NRTEQNEKGEWVEDEE---QRIKLKANYIISAFG----STLLDNDV 262
K M+F N +E E +R + ++ + G + L
Sbjct: 226 AKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLG--- 282
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
L+ I V ++ G+ ++ TS+P V+ GD
Sbjct: 283 LDKIN-VAKNERGFVKIG-DHFETSIPDVYAIGD 314
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural
genomics, PSI, protein structure initiative; NMR
{Bacillus subtilis} SCOP: d.186.2.1
Length = 110
Score = 28.7 bits (63), Expect = 3.3
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 190 EEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK 245
E++ WEE + P+ P QV++ +++ + R + E + + +E IKL
Sbjct: 44 AELETWWEELQKNPPYEPPDQVELLAQELSQEKLARKQLEELNKTLGNELSDIKLS 99
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 30.0 bits (68), Expect = 3.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVV 177
V+V G G + A R GA VLV+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGA-DVLVL 70
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 29.8 bits (68), Expect = 3.8
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 220 GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPE 278
+ G V + ++ A+ ++ A G + LEA V+ ++ G
Sbjct: 231 EDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAG-VRTNELGAII 289
Query: 279 VNYTTMATSVPGVFCGGD 296
V+ TS PG++ GD
Sbjct: 290 VD-AFSRTSTPGIYALGD 306
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
{Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
1b4e_A
Length = 323
Score = 29.8 bits (68), Expect = 3.9
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 30 DIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVK 67
D + V A+P R+P + E+E + + G++
Sbjct: 41 DDYKAVEAMPG-----VMRIPEKHLAREIERIANAGIR 73
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 29.8 bits (68), Expect = 4.4
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 201 EFLPFMSPVQVD---VKD-NKIAGMQF------NRTEQNEKGEWVEDEE----QRIKLKA 246
E L D V I + ++ + E+ + +
Sbjct: 202 EMLDRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFT 261
Query: 247 NYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
N ++ A G + + I + + K G V+ TM T++P VF GD
Sbjct: 262 NSVVLAAGRRPVIPEGAREIG-LSISKTGI-VVD-ETMKTNIPNVFATGD 308
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
cobalt(III), electron transport; HET: NCO; 1.50A
{Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
3pni_A
Length = 66
Score = 26.9 bits (60), Expect = 4.8
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 10/58 (17%)
Query: 518 INDDMCINCGKCYMAC------NDSGYQAITFH---PETHQAHVTDECTGC-TLCLSI 565
++ D CI C C ND G E + C ++I
Sbjct: 6 VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITI 63
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 29.5 bits (67), Expect = 5.3
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 140 KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 198
+ L L TV+V+GAG+ A S + G VLV R T RA V+LA +
Sbjct: 159 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR---TYERA----VELARDL 211
Query: 199 KCEFLPF 205
E + F
Sbjct: 212 GGEAVRF 218
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 29.4 bits (67), Expect = 5.3
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 227 EQNEKGEWVEDEEQRIKLKANYIISAFG-STLLDNDVLEAIKPVKLDKYGYPEVNYTTMA 285
+ E V + + A+ ++ A G LE VK++++G V+ M
Sbjct: 259 QSTENCYNVVLTNGQ-TICADRVMLATGRVPNTTGLGLERAG-VKVNEFGAVVVD-EKMT 315
Query: 286 TSVPGVFCGGD 296
T+V ++ GD
Sbjct: 316 TNVSHIWAVGD 326
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 29.1 bits (66), Expect = 5.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 723 GGIDSADVALQFIQAGA------HAVQICSAVQ 749
GGI + D A++ I GA + I + +
Sbjct: 207 GGIRTFDDAMKMINNGASRIGASAGIAILNGIH 239
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein,
reductase, mitochondria MEMB oxidoreductase; HET: FAD
HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Length = 282
Score = 29.0 bits (65), Expect = 6.4
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 521 DMCINCGKCYMACN 534
CI C C +C
Sbjct: 180 YECILCACCSASCP 193
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Length = 59
Score = 26.6 bits (59), Expect = 6.6
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 518 INDDMCINCGKCYMAC------NDSGYQAITFHPETHQAHVTDECTGC 559
I+ + CI C C C D +A+ P++ D C
Sbjct: 4 IDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDAC 51
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 28.9 bits (65), Expect = 7.4
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVV----FRKGCTN-----IRAVPEEVQLA 195
V+++G+G A SA GA KV+++ G T + A + Q
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNTKLAAGGMNAAETKPQAK 182
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii
ME49}
Length = 356
Score = 29.0 bits (66), Expect = 7.4
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 30 DIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVK 67
+ P+ ++P Q RL + + EV + G+K
Sbjct: 56 ETSVPIPSMPG-----QSRLSMEDLLKEVGEARSYGIK 88
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like
superfamily, structur genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus
faecalis} PDB: 2r3e_A
Length = 310
Score = 28.7 bits (65), Expect = 8.0
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 148 GTVIVLGAGDT-----AFDCATSALRCGANKVLVVFRKGCTNI--RAVPEEVQLAWEEKC 200
G V+++G G+ + + GA V+ PE + + +EE
Sbjct: 45 GRVVLIG-GNRQYGGAIIMSTEACINSGAGLTTVITDVKNHGPLHARCPEAMVVGFEETV 103
Query: 201 EFLPFMSPVQV 211
+ V
Sbjct: 104 LLTNVVEQADV 114
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 28.7 bits (65), Expect = 9.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGD 296
L + VKL G +V+ T+VP ++ GD
Sbjct: 299 LGNVG-VKLTPKGGVQVD-EFSRTNVPNIYAIGD 330
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 28.8 bits (64), Expect = 9.7
Identities = 1/18 (5%), Positives = 2/18 (11%)
Query: 516 ALINDDMCINCGKCYMAC 533
+ N
Sbjct: 6 HHHHHSQDPNSAAPAAEA 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,707,154
Number of extensions: 785243
Number of successful extensions: 2194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 183
Length of query: 842
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 740
Effective length of database: 3,853,851
Effective search space: 2851849740
Effective search space used: 2851849740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)