RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16199
(842 letters)
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 166 bits (421), Expect = 2e-46
Identities = 146/250 (58%), Positives = 175/250 (70%), Gaps = 9/250 (3%)
Query: 521 DMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWL 580
+ ++ +A D + IMC+YNK+DW+
Sbjct: 69 GPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIAS---------IMCSYNKNDWM 119
Query: 581 ELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLT 640
ELS+K E +GADALELNLSCPHGMGERGMGLACGQDPE+VRNI WVR +V+IPFF KLT
Sbjct: 120 ELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT 179
Query: 641 PNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATR 700
PN+T+I IA+AA EG ADGV+A NTVSGLM L ADG PWPAVG K TTYGGVSG A R
Sbjct: 180 PNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIR 239
Query: 701 PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYI 760
P+ L+AV++IA+ P FPIL GGIDSA+ LQF+ +GA +Q+CSAVQNQDFTV+ DY
Sbjct: 240 PIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYC 299
Query: 761 TGLQTLLYLK 770
TGL+ LLYLK
Sbjct: 300 TGLKALLYLK 309
Score = 92.3 bits (228), Expect = 5e-21
Identities = 68/84 (80%), Positives = 75/84 (89%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVK 407
ISVE+ GLKF NPFGLASA PTT+SSM+RRAFE GWGFA+TKTFSL KD+VTNVSPRIV+
Sbjct: 1 ISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR 60
Query: 408 GTTSRHLYGPEQGSFLNIELISEK 431
GTTS +YGP Q SFLNIELISEK
Sbjct: 61 GTTSGPMYGPGQSSFLNIELISEK 84
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 126 bits (316), Expect = 3e-34
Identities = 101/154 (65%), Positives = 119/154 (77%), Gaps = 2/154 (1%)
Query: 102 NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD 161
IFQGLT++ GFYTSK FLP VA SSK G+C LP ++G VIVLGAGDTAFD
Sbjct: 2 KTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSP--LPSIRGAVIVLGAGDTAFD 59
Query: 162 CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM 221
CATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I +
Sbjct: 60 CATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV 119
Query: 222 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 255
QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS
Sbjct: 120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 96.4 bits (238), Expect = 3e-23
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 8/198 (4%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 209
+ +LGAG + CA+ R G + + + ++ L+ E +F V
Sbjct: 7 IALLGAGPASISCASFLARLGYSDITIFEKQ--------EYVGGLSTSEIPQFRLPYDVV 58
Query: 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPV 269
+++ K G++ + + E + + KA +I L D V EA+ P+
Sbjct: 59 NFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPI 118
Query: 270 KLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQEKNNLT 329
K +++ PEV+ TM TS P VF GGD +++TTVESVNDGK A+W+IHKYIQ + +
Sbjct: 119 KFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGAS 178
Query: 330 VPDKPCLPKFMSHIDLVD 347
V KP LP F + +DLVD
Sbjct: 179 VSAKPELPLFYTPVDLVD 196
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 94.0 bits (233), Expect = 8e-23
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 3/125 (2%)
Query: 441 QAIPNFGEYKKIRENLITELNLKKLNSDGVSLQNGLPKRQINTPVETILSVKDVIGQAVQ 500
+ +PNFG Y + R+ +I E ++ + +R+ P + I ++KDVIG+A+Q
Sbjct: 30 KKLPNFGPYLEQRKKIIAEEKMRLKEQNAA---FPPLERKPFIPKKPIPAIKDVIGKALQ 86
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCT 560
+ + EL N +QVVA+I+++MCINCGKCYM CNDSGYQAI F PETH VTD CTGCT
Sbjct: 87 YLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCT 146
Query: 561 LCLSI 565
LCLS+
Sbjct: 147 LCLSV 151
Score = 69.0 bits (168), Expect = 3e-14
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 773 QLKGWDGQSPPTPVHQKGKPAYQFRDKEGKAIPNFGEYKKIRENLITELNLK 824
+L+GWDGQSP T HQKGKP + + GK +PNFG Y + R+ +I E ++
Sbjct: 1 ELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMR 52
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 93.1 bits (230), Expect = 4e-21
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 5/226 (2%)
Query: 542 TFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCP 601
+ + ++ L + ++ + + + +L K LELNLSCP
Sbjct: 73 NLGVDFYLSYAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPI-TKEKGTILELNLSCP 131
Query: 602 HGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGV 661
+ G G D + R V + +PF VK+ P AA V
Sbjct: 132 NVPG----KPQVGYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLV 187
Query: 662 SAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILG 721
I V+ + + V K +GG+ G P L V++ + P+ + G
Sbjct: 188 KFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFG 247
Query: 722 IGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767
GG+ S + A I AGA VQ+ +A+ ++ + LQ ++
Sbjct: 248 CGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIM 293
Score = 74.6 bits (182), Expect = 6e-15
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 7/220 (3%)
Query: 349 SVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRI--V 406
V I G +F NPF A+ T +RR E+ G + K+ +L N PR +
Sbjct: 3 KVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPR-TGNPEPRYFGL 61
Query: 407 KGTTSRHLYGPEQGSFLNIELISEKTAFIFFFLFQAIPNFGEYKKIRENLITELNLKKLN 466
+ + P G + ++ + LF ++ + + K+
Sbjct: 62 PLGSINSMGLPNLGVDFYLSYAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKG 121
Query: 467 SDG---VSLQNGLPKRQINTPVETILS-VKDVIGQAVQRVTNYTELDNKKQVVALINDDM 522
+ +S N K Q+ +T + ++ V + +
Sbjct: 122 TILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVL 181
Query: 523 CINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLC 562
++ C +S + P + + L
Sbjct: 182 NDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLG 221
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 88.5 bits (218), Expect = 1e-19
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 6/204 (2%)
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNIS 624
+ SI ++ L K E + ELNLSCP+ GE D E +
Sbjct: 95 PIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEP----QLAYDFEATEKLL 150
Query: 625 LWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVG 684
V + P VK P ++ A ++ +N+V+ + + +V
Sbjct: 151 KEVFTFFTKPLGVK-LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVV 209
Query: 685 TKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQ 743
K +GG+ G +P L V + P I+G GGI++ A + + GA +Q
Sbjct: 210 IKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQ 269
Query: 744 ICSAVQNQDFTVVDDYITGLQTLL 767
I +A+ + + D I L+ ++
Sbjct: 270 IGTALHKEGPAIFDRIIKELEEIM 293
Score = 70.8 bits (172), Expect = 9e-14
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIV 406
++ KF NPF AS + + G +TK+ +L+K N PR V
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLPRYV 59
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 84.6 bits (208), Expect = 3e-18
Identities = 51/254 (20%), Positives = 83/254 (32%), Gaps = 21/254 (8%)
Query: 522 MCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASI---MCTYNKDD 578
N D+ E +L +I T +
Sbjct: 92 QPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQG 151
Query: 579 WLELSKKTEK--AGADALELNLSCP----HGMGERGMGLACGQDPEMVRNISLWVRSSVK 632
+ EK A A + +N+S P + G L + L
Sbjct: 152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKY 211
Query: 633 IPFFVKLTPNITNITDIA--KAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTT 690
+P VK+ P+++ I + DGV A NT + S T
Sbjct: 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTT---LDRSLVQGMKNCDQT----- 263
Query: 691 YGGVSGNATRPMGLKAVSSIAKMF-PNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQ 749
GG+SG + + + ++ PI+G+GGIDS A + I AGA VQI S
Sbjct: 264 -GGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFI 322
Query: 750 NQDFTVVDDYITGL 763
+ ++ + +T +
Sbjct: 323 FKGPPLIKEIVTHI 336
Score = 40.0 bits (92), Expect = 9e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 338 KFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDM 397
+ + + V GL F NP GLA+ + G+G T + +
Sbjct: 35 EALVRQKVPAKPVNCMGLTFKNPLGLAAGLDKD-GECIDALGAMGFGSIEIGTVTPRPQP 93
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 84.6 bits (208), Expect = 7e-18
Identities = 47/285 (16%), Positives = 78/285 (27%), Gaps = 56/285 (19%)
Query: 530 YMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKA 589
N+ G +T + + ++ + + I T N D L+
Sbjct: 118 SCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGR 177
Query: 590 GADALELNLSCPHGMGERGM---------------------------------------- 609
AD + +N+S P+ G R
Sbjct: 178 YADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVE 237
Query: 610 ------GLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSA 663
+ N + + K FVKL P++ A + +
Sbjct: 238 KKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGM 297
Query: 664 INTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMF-PNFPILGI 722
I + + GGVSG + + K + + PI+
Sbjct: 298 IISNTTTQINDIKSFENK---------KGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS 348
Query: 723 GGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQTLL 767
GGI S AL+ I+AGA Q+ S + L LL
Sbjct: 349 GGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL 393
Score = 58.4 bits (140), Expect = 2e-09
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 2/111 (1%)
Query: 336 LPKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQK 395
+ + + D + I L F NPFG+A+ + + G+ F T + +
Sbjct: 39 ILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNG-VCIDSILKLGFSFIEIGTITPRG 97
Query: 396 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAFIFFFLFQAIPNF 446
N PRI + SR + + + + ++E +
Sbjct: 98 -QTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLS 147
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 82.0 bits (201), Expect = 2e-17
Identities = 71/245 (28%), Positives = 111/245 (45%), Gaps = 13/245 (5%)
Query: 525 NCGKCYMACNDSGYQAITFHPETHQAHVTD--ECTGCTLCLSILIASIMCTYNKDDWLEL 582
N AI + +T+ +IA++ + D
Sbjct: 58 NPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVC 117
Query: 583 SKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPN 642
+K + A A+ELN+SCP+ G A G DPE+ + ++ K+P +VKL+PN
Sbjct: 118 AKIGDAANVKAIELNISCPNVKH---GGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN 174
Query: 643 ITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPM 702
+T+I IAKA ADG++ INT+ G+ P A GG+SG A +P+
Sbjct: 175 VTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILA------NITGGLSGPAIKPV 228
Query: 703 GLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITG 762
LK + +A+ + PI+G+GG+ +A L+ AGA AV + +A D V I
Sbjct: 229 ALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF-ADPFVCPKIIDK 286
Query: 763 LQTLL 767
L L+
Sbjct: 287 LPELM 291
Score = 67.0 bits (162), Expect = 2e-12
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRI 405
+SV++ GL NP AS + N G + K +L N +PR+
Sbjct: 7 LSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHP-RFGNPTPRV 63
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 80.4 bits (197), Expect = 1e-16
Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 13/242 (5%)
Query: 530 YMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKA 589
N G + Q T L L + + + + + +
Sbjct: 117 RYGFNSHGLSVVEHRLRARQQKQAKL-TEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGP 175
Query: 590 GADALELNLSCPHGMGERGMGL--ACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNIT 647
AD L +N+S P+ G R + + V +R + VK+ P++T+
Sbjct: 176 LADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQD 235
Query: 648 --DIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTTYGGVSGNATRPMGLK 705
DIA E DG+ NT + G ++
Sbjct: 236 KEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSET------GGLSGKPLRDLSTQTIR 289
Query: 706 AVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQDFTVVDDYITGLQT 765
+ ++ + PI+G+GG+ S AL+ I+AGA VQ+ +A+ VV L+
Sbjct: 290 EMYALTQ--GRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEA 347
Query: 766 LL 767
LL
Sbjct: 348 LL 349
Score = 51.1 bits (121), Expect = 3e-07
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 348 ISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGWGFAVTKTFSLQKDMVTNVSPRIVK 407
+ V + G KF NP G+A+ V ++ G+GF + + K N PR+ +
Sbjct: 50 LEVRVLGHKFRNPVGIAAGFDKHG-EAVDGLYKMGFGFVEIGSVTP-KPQEGNPRPRVFR 107
Query: 408 GTTSRHLYGPEQGSFLNIELISEK 431
+ + + + ++ +
Sbjct: 108 LPEDQAVINRYGFNSHGLSVVEHR 131
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 67.6 bits (164), Expect = 2e-13
Identities = 39/185 (21%), Positives = 59/185 (31%), Gaps = 11/185 (5%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 209
+ ++G+G A A A R K L+ +I + E P
Sbjct: 8 LCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 66
Query: 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKP- 268
+ +F T E V+ + KL + + +L +
Sbjct: 67 VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEP 126
Query: 269 --------VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD-TTVESVNDGKTAAWHIH 319
V+LD GY T TSVPGVF GD + + + G AA
Sbjct: 127 ATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 186
Query: 320 KYIQE 324
Y+QE
Sbjct: 187 HYLQE 191
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 63.3 bits (153), Expect = 5e-12
Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 9/183 (4%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP--FMS 207
+++LG+G + A A R + +++ EV+ + + M
Sbjct: 8 LLILGSGPAGYTAAVYAARANL-QPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLME 66
Query: 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIK 267
+ + + + + + + + + +I A G++ + AI
Sbjct: 67 RMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIF 126
Query: 268 PVKLD-KYGY----PEVNYTTMATSVPGVFCGGDTANLS-DTTVESVNDGKTAAWHIHKY 321
+L+ + GY ++ TS+PGVF GD + + S G AA +Y
Sbjct: 127 EGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY 186
Query: 322 IQE 324
+
Sbjct: 187 LDG 189
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 56.4 bits (135), Expect = 2e-09
Identities = 42/211 (19%), Positives = 67/211 (31%), Gaps = 45/211 (21%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK---------GCTNIRAVPEEVQLAWEEKC 200
+V+GAG + A A + G KV +V + GC +A+ + K
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKH 64
Query: 201 EFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKG------------------------EWVE 236
+ V + K+ + + ++ G V
Sbjct: 65 SEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVV 124
Query: 237 DEEQRIKLKANYIISAFGSTL---------LDNDVLEAIKPVKLDKYGYPEVNYTTMATS 287
+ + I A GS D LE I +K+ G EV+ TS
Sbjct: 125 NGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIG-IKMTNRGLIEVD-QQCRTS 182
Query: 288 VPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
VP +F GD ++ +GK AA I
Sbjct: 183 VPNIFAIGDIVPGPALAHKASYEGKVAAEAI 213
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 57.2 bits (136), Expect = 4e-09
Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 213 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN---------DVL 263
V + + + + + + Q + + +I + + +L
Sbjct: 252 VLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLL 311
Query: 264 EAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIHKYIQ 323
I V Y M ++PG+F G+ + ++++ G AA + Y++
Sbjct: 312 NFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG-GLSVGKALSSGCNAADLVISYLE 370
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 50.3 bits (119), Expect = 4e-07
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 15/178 (8%)
Query: 571 MCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSS 630
+ + +L + E ADAL +++ +RG G +
Sbjct: 104 LAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERL------AELLP 157
Query: 631 VKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLTT 690
+ P VK + + ++A++ V+G S +
Sbjct: 158 LPFPVMVKEVGHGLSREAALALR----DLPLAAVD-VAGAGGTSWARVEEWVRFGEVRHP 212
Query: 691 YGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAV 748
G T +A+ + ++ P+ P++ GG+ + + + GA + + +
Sbjct: 213 ELCEIGIPT----ARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPL 266
Score = 34.1 bits (77), Expect = 0.065
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 337 PKFMSHIDL--VDISVEICGLKFPNPFGLASAPPTTASS------MVRRAFENGWGFAV 387
+ ++ + L VD++ G PF + + + + A G G +
Sbjct: 13 YQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMML 71
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 49.2 bits (116), Expect = 7e-07
Identities = 33/210 (15%), Positives = 57/210 (27%), Gaps = 42/210 (20%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVPEEVQLAWEEKCEFL-- 203
I +G G + G +++V C + VP + +
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104
Query: 204 -----------------PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ------ 240
+ + ++ M F EQ + +
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHT 164
Query: 241 ----RIKLKANYIISAFGS--------TLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSV 288
KA +I A G+ + L I + L G VN + TSV
Sbjct: 165 VEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVN-EYLQTSV 223
Query: 289 PGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
P V+ GD ++ G AA ++
Sbjct: 224 PNVYAVGDLIGGPMEMFKARKSGCYAARNV 253
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 47.0 bits (110), Expect = 2e-06
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 4/179 (2%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLA--WEEKCEFLPFMS 207
V+++G+G A + R G L+ R G + V E ++ E + +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIK 267
+ + I ++ + E + +
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123
Query: 268 PVKLDKYGYPEVNYTTMATSVPGVF-CGGDTANLSDTTVESVNDGKTAAWHIHKYIQEK 325
V+ ++ G ++ T+V GVF G T + + +G A+ Y+
Sbjct: 124 AVERNRMGEIIIDA-KCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRT 181
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 43.4 bits (102), Expect = 2e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSI 565
A + ++ CI+CG C C AI+ + + D C C C +
Sbjct: 1 AYVINEACISCGACEPECP---VNAISSGDDRYVID-ADTCIDCGACAGV 46
Score = 28.0 bits (62), Expect = 0.55
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 518 INDDMCINCGKCYMAC 533
I+ D CI+CG C C
Sbjct: 32 IDADTCIDCGACAGVC 47
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 48.0 bits (113), Expect = 3e-06
Identities = 31/266 (11%), Positives = 60/266 (22%), Gaps = 39/266 (14%)
Query: 71 ERSLSTRDITIEKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSS 130
+ + IE G + G + +E+ V +
Sbjct: 71 KNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 130
Query: 131 KKGLCGGCKK------ESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN 184
+ K L ++ T T A ++
Sbjct: 131 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCC 190
Query: 185 IRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 244
+ P ++LA + V + G + +RI
Sbjct: 191 MD--PNVIELAGYKNDGTRDLSQKHGVILSTTG------------HDGPFGAFCAKRIV- 235
Query: 245 KANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD-- 302
N L +K + ++ + V ++ V ++ G D
Sbjct: 236 -------DIDQ----NQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGL 284
Query: 303 -----TTVESVNDGKTAAWHIHKYIQ 323
T G AA I K+
Sbjct: 285 NRMGPTFGAMALSGVHAAEQILKHFA 310
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 46.7 bits (110), Expect = 3e-06
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 45/211 (21%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----------CTNIRAVPEEVQLAWEEK 199
V+++G G + A A + G K + ++G C +A+ + E K
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAK 64
Query: 200 CEFLPF-MSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL-------------- 244
F + V++ + G + +G ++ ++
Sbjct: 65 HSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEIS 124
Query: 245 -----------KANYIISAFGSTL------LDNDVLEAIKPVKLDKYGYPEVNYTTMATS 287
K +II A GS + L+ I V+ DK G VN +T+
Sbjct: 125 VDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKI-GVETDKLGRILVN-ERFSTN 182
Query: 288 VPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
V GV+ GD ++ DG ++
Sbjct: 183 VSGVYAIGDVIPGPMLAHKAEEDGVACVEYL 213
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 41.7 bits (97), Expect = 2e-05
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLC 562
AL+ D CINC C C + + CT C
Sbjct: 1 ALMITDECINCDVCEPECPNGAI----SQGDETYVIEPSLCTECVGH 43
Score = 26.2 bits (57), Expect = 5.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 552 VTDECTGCTLCLSILIASIM 571
+TDEC C +C +
Sbjct: 4 ITDECINCDVCEPECPNGAI 23
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 41.6 bits (97), Expect = 2e-05
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 507 ELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPET-HQAHVTDECTGCTLCLSI 565
+ D K I++ CI C C C AI H + C C CL+
Sbjct: 18 KADPDKLHFVQIDEAKCIGCDTCSQYCP---TAAIFGEMGEPHSIPHIEACINCGQCLTH 74
Score = 29.3 bits (65), Expect = 0.49
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 510 NKKQVVALINDDMCINCGKCYMAC 533
+ ++ + + CINCG+C C
Sbjct: 52 EMGEPHSIPHIEACINCGQCLTHC 75
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 41.4 bits (96), Expect = 5e-05
Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 23/71 (32%)
Query: 515 VALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVT--------------------- 553
V + CI C +C C S + E
Sbjct: 13 VPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQI 72
Query: 554 --DECTGCTLC 562
+C GC C
Sbjct: 73 NTLDCMGCGNC 83
Score = 30.2 bits (67), Expect = 0.33
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQA 550
IN C+ CG C C +A+ P Q
Sbjct: 72 INTLDCMGCGNCADIC-PPKEKALVMQPLDTQR 103
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 43.0 bits (100), Expect = 6e-05
Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 48/215 (22%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----------CTNIRAVPEEVQLAWEEK 199
V+VLG G + A +A G KV +V R C +A+ + E +
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR 67
Query: 200 CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKG-----------------------EWVE 236
+ + ++ + + + + G
Sbjct: 68 HLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEV 127
Query: 237 DEEQRIKLKANYIISAFGSTLLDNDVLEAIKPV-------------KLDKYGYPEVNYTT 283
+ N ++ A + G+ EV+
Sbjct: 128 SLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVD-KQ 186
Query: 284 MATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
M T+VP ++ GD ++V++G AA +
Sbjct: 187 MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENC 221
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 162
Score = 41.4 bits (96), Expect = 9e-05
Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 24/129 (18%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS-P 208
V ++G G FD A + G + + + + +P
Sbjct: 32 VAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQ 91
Query: 209 VQVDVKDNKIAGMQFNRT-----------------------EQNEKGEWVEDEEQRIKLK 245
+ + + G +T + ++ G V + L
Sbjct: 92 IVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLA 151
Query: 246 ANYIISAFG 254
+ ++ G
Sbjct: 152 VDNVVICAG 160
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus
asaccharolyticus [TaxId: 1258]}
Length = 55
Score = 38.8 bits (90), Expect = 9e-05
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLSI 565
A + +D CI CG C C + A D C C C S+
Sbjct: 1 AYVINDSCIACGACKPEC-----PVNCIQEGSIYAIDADSCIDCGSCASV 45
Score = 28.0 bits (62), Expect = 0.57
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 518 INDDMCINCGKCYMAC 533
I+ D CI+CG C C
Sbjct: 31 IDADSCIDCGSCASVC 46
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 39.3 bits (91), Expect = 1e-04
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPE-------THQAHVTDECTGCTLCLSI 565
+ D CI C +C AC + P + T++C GC C +
Sbjct: 3 TVKIYDTCIGCTQCVRAC---PTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETA 56
Score = 30.1 bits (67), Expect = 0.17
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 511 KKQVVALINDDMCINCGKCYMACNDSGYQAITFHPET 547
Q+ + + C+ C +C AC ++
Sbjct: 35 AGQIASSPRTEDCVGCKRCETACP---TDFLSIRVYL 68
Score = 26.6 bits (58), Expect = 3.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 548 HQAHVTDECTGCTLC 562
H + D C GCT C
Sbjct: 2 HTVKIYDTCIGCTQC 16
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 42.5 bits (99), Expect = 2e-04
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 15/177 (8%)
Query: 570 IMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRS 629
++ + + E GA+AL+++L+ E M ++ I + S
Sbjct: 100 FANLGSEATAAQAKEAVEMIGANALQIHLNVIQ---EIVMPEGDRSFSGALKRIE-QICS 155
Query: 630 SVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPWPAVGTKKLT 689
V +P VK + K E A V + G G + + +
Sbjct: 156 RVSVPVIVKEVGFGMSKASAGKLY-EAGAAAV----DIGG-----YGGTNFSKIENLRRQ 205
Query: 690 TYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICS 746
+ +++ I FP ++ GG+ A + I GA +
Sbjct: 206 RQISFFNSWGIST-AASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAG 261
Score = 34.4 bits (78), Expect = 0.045
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 336 LPKFMSHIDL--VDISVEICGLKFPNPFGLAS-------APPTTASSMVRRAFENGWGFA 386
+ + + L VDIS +I L +P + + S+ R A + G A
Sbjct: 11 VHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLA 70
Query: 387 VTKTFSLQKDMVTNVSPRIVK 407
V S KD +S IV+
Sbjct: 71 VGSQMSALKDPSERLSYEIVR 91
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 39.4 bits (91), Expect = 2e-04
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 11/56 (19%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHVT--------DECTGCTLCLSI 565
++ D+CI G C AC ++ C C C+++
Sbjct: 40 VDFDLCIADGSCINACP---VNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNV 92
Score = 31.3 bits (70), Expect = 0.13
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHP 545
+ + ++ +N+ CI C C C AI P
Sbjct: 61 QWYDTPGHPASEKKADPVNEQACIFCMACVNVCP---VAAIDVKP 102
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 37.5 bits (86), Expect = 5e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLC 562
AL +D C C C C +AIT + +C+ C
Sbjct: 1 ALYINDDCTACDACVEECP---NEAITPGDPIY-VIDPTKCSECVGA 43
Score = 27.8 bits (61), Expect = 1.4
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 552 VTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLS-CPHG 603
+ D+CT C C+ + + ++ +K +E GA CP
Sbjct: 4 INDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPAD 56
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 39.7 bits (91), Expect = 5e-04
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 14/183 (7%)
Query: 146 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 205
LK V+VLGAG + + G + L+ + + +
Sbjct: 2 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKI 60
Query: 206 MSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEA 265
+ + + G+ + + D A +L ND L
Sbjct: 61 RLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALAR 120
Query: 266 IKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD------TTVESV----NDGKTAA 315
+ D T+ P V+ GD + +E+ N G A
Sbjct: 121 AAGLACDDGI---FVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVA 177
Query: 316 WHI 318
H+
Sbjct: 178 RHL 180
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 149
Score = 37.9 bits (87), Expect = 0.001
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 518 INDDMCINCGKCY-MACNDS-GYQAITFHPETHQAHVTDE--CTGCTLC 562
+N + C C AC +T E +A+ + C C C
Sbjct: 4 VNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSC 52
Score = 27.9 bits (61), Expect = 3.1
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 503 TNYTELDNKKQVVALINDDMCINCGKCYMAC 533
+ LD +K DMC C C C
Sbjct: 26 NDLMTLDKEKMKAYNREPDMCWECYSCVKMC 56
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 39.5 bits (90), Expect = 0.001
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 263 LEAIKPVKLDKYGYPEVN---YTTMATSVPGVFCGGD-TANLSDTTVES-VNDGKTAAWH 317
L K + ++ VN Y + V V+ G+ T+ + V G +A
Sbjct: 278 LPTWKVRAIYQFWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 337
Query: 318 IHKYIQEK 325
+ Q+K
Sbjct: 338 LINCAQKK 345
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria
(Desulfovibrio africanus) [TaxId: 873]}
Length = 64
Score = 35.5 bits (81), Expect = 0.001
Identities = 5/46 (10%), Positives = 10/46 (21%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCL 563
++ D CI C C + + +
Sbjct: 6 VDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAM 51
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 37.8 bits (86), Expect = 0.002
Identities = 23/173 (13%), Positives = 47/173 (27%), Gaps = 15/173 (8%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 209
V+++G G F+ A L +V V+ ++ +A L S
Sbjct: 3 VVIVGNGPGGFELA-KQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 210 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKPV 269
+ +I + + + + ++ + A L +
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGI------ 114
Query: 270 KLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVN----DGKTAAWHI 318
G + TS V+ GD A S + + A +
Sbjct: 115 ---HTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADIL 164
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 14/180 (7%)
Query: 150 VIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 208
V+++G G + A G + +V P + ++
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDVLEAIKP 268
N T N + V + R +++ G L+ N E
Sbjct: 66 PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN--CELASA 123
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD------TTVESV----NDGKTAAWHI 318
L +N M TS P + GD A +ESV + A +
Sbjct: 124 AGLQVDNGIVIN-EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAIL 182
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 36.8 bits (84), Expect = 0.006
Identities = 6/61 (9%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 692 GGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQ 751
G + + + + ++ G + + D+ + + G H + A+
Sbjct: 152 SYTQGQLLYQNDFQFLKDVL-QSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRP 210
Query: 752 D 752
Sbjct: 211 K 211
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 36.8 bits (84), Expect = 0.006
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 24/150 (16%)
Query: 144 PILKG-TVIVLGAGDTAFDCATSAL--------------------RCGANKVLVVFRKGC 182
P L G +V+G G+ A D A L G +V++V R+G
Sbjct: 35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94
Query: 183 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKG--EWVEDEEQ 240
E++ + + P ++D ++ A +QN K + + E +
Sbjct: 95 LQAAFTTLELRELADLD-GVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPR 153
Query: 241 RIKLKANYIISAFGSTLLDNDVLEAIKPVK 270
+ + + +E I +
Sbjct: 154 PGHRRMVFRFLTSPIEIKGKRKVERIVLGR 183
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 81
Score = 34.3 bits (78), Expect = 0.006
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 515 VALINDDMCINCGKCYMAC------NDSGYQAITFHPETHQAHVTDE-CTGCTLCL 563
+++ + CI CG C A ++ G +T V D
Sbjct: 3 YTIVDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAF 58
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 36.3 bits (82), Expect = 0.012
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 235 VEDEEQRIKLKANYIISAFGSTL-------LDNDVLEAIKPVKLDKYGYPEVNYTTMATS 287
+E+ +R +L ++ A + LD+ + + + +
Sbjct: 256 IEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAALQR 315
Query: 288 VPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
+PG+ G+ + + A +
Sbjct: 316 LPGLHLIGNAYKGVGLND-CIRNAAQLADAL 345
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 32.8 bits (74), Expect = 0.014
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDE--CTGCTLC 562
++ D CI C C D + + DE
Sbjct: 6 VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEA 52
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 36.2 bits (83), Expect = 0.015
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 517 LINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGC 559
LI+ D C C C Y+ I F+ ++ +++C C
Sbjct: 211 LIDQDKCRGWRMCITGCP---YKKIYFNWKS---GKSEKCIFC 247
Score = 32.0 bits (72), Expect = 0.33
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 511 KKQVVALINDDMCINCGKCYMAC 533
+ QV ++N D CI C C + C
Sbjct: 4 RSQVGMVLNLDKCIGCHTCSVTC 26
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 36.3 bits (82), Expect = 0.016
Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 22/168 (13%)
Query: 162 CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKC-EFLPFMSPVQVDVKDNKIAG 220
S + + + + K I +++ A + + F + V
Sbjct: 210 YYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVI---------- 259
Query: 221 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN---------DVLEAIKPVKL 271
+ + +Q + ++ + A+Y+I S + A++ V
Sbjct: 260 -KIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFT 318
Query: 272 DKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHIH 319
Y + + A+ F G TA ++ G AA ++
Sbjct: 319 P-YQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN 365
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 34.8 bits (79), Expect = 0.017
Identities = 10/57 (17%), Positives = 12/57 (21%), Gaps = 12/57 (21%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPE------------THQAHVTDECTGCTLC 562
+ CI C C AC + C C LC
Sbjct: 23 NGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLC 79
Score = 27.1 bits (59), Expect = 6.0
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 511 KKQVVALINDDMCINCGKCYMACNDSGYQAITFHPE 546
+ V IN CI CG C AC AI +
Sbjct: 61 RYAKVYEINMLRCIFCGLCEEACP---TGAIVLGYD 93
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 32.7 bits (74), Expect = 0.018
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPET 547
I+ D+CI+CG C C AI
Sbjct: 32 YYIDPDVCIDCGACEAVCP---VSAIYHEDFV 60
Score = 30.4 bits (68), Expect = 0.16
Identities = 9/49 (18%), Positives = 11/49 (22%), Gaps = 6/49 (12%)
Query: 516 ALINDDMCINC--GKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLC 562
A + + CI C C D C C C
Sbjct: 1 AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDP----DVCIDCGAC 45
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 35.2 bits (80), Expect = 0.021
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 509 DNKKQVVALINDDMCINCGKCYMACND 535
D K +V LI+ CI C C +AC++
Sbjct: 24 DYKAEVAKLIDVSTCIGCKACQVACSE 50
Score = 32.5 bits (73), Expect = 0.15
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 515 VALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCL 563
+ + CI CG C C + + E + +CT C +
Sbjct: 124 IVDFQSENCIGCGYCIAGCP---FNIPRLNKED---NRVYKCTLCVDRV 166
Score = 27.9 bits (61), Expect = 4.2
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 15/113 (13%)
Query: 501 RVTNYTELDNKKQVVALINDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCT 560
V ++E + ++ LI D C++C AI + ++ C GC
Sbjct: 77 TVMRFSETEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCG 136
Query: 561 LCLSILIASIMCTYNKDDWLELSKKTEKAGADALELNLSCPHGMGERGMGLAC 613
C C +N + + K + G AC
Sbjct: 137 YC------IAGCPFNIPRLNKEDNRVYKC---------TLCVDRVSVGQEPAC 174
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 35.3 bits (80), Expect = 0.021
Identities = 32/209 (15%), Positives = 57/209 (27%), Gaps = 43/209 (20%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK----GCTNIRAVPEEVQLAWEEKCEFLPF 205
+V+G G A A GA + VV C N+ VP++V EF+
Sbjct: 6 YLVIGGGSGGLASARRAAELGA-RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHD 64
Query: 206 MSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV--- 262
+ + K + + II + D
Sbjct: 65 HADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE 124
Query: 263 ---------------------------------LEAIKPVKLDKYGYPEVNYTTMATSVP 289
L + ++ D G+ V+ T+V
Sbjct: 125 VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKL-GIQTDDKGHIIVD-EFQNTNVK 182
Query: 290 GVFCGGDTANLSDTTVESVNDGKTAAWHI 318
G++ GD + T ++ G+ A +
Sbjct: 183 GIYAVGDVCGKALLTPVAIAAGRKLAHRL 211
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 34.3 bits (77), Expect = 0.041
Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 54/222 (24%)
Query: 150 VIVLGAGDTAFDCATSALRCGAN--KVLVVFRKG----CTNIRAVPEEVQL--------- 194
+++LG G ++ A A +V V+ G VP + +
Sbjct: 4 IVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTEL 63
Query: 195 -----------------------------AWEEKCEFLPFMSPVQVDVKDNKIAGMQFNR 225
A + + + + V V + +
Sbjct: 64 RRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTP 123
Query: 226 TEQNEKGEWVEDEEQRIKLKANYIISAFGS---------TLLDNDVLEAIKPVKLDKYGY 276
+ + + + +A+ ++ A G+ + + ++L + Y
Sbjct: 124 GLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNY 183
Query: 277 PEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
V+ T G++ GD L + G+ A +H
Sbjct: 184 LTVDRV-SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHA 224
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId:
2336]}
Length = 59
Score = 31.4 bits (70), Expect = 0.047
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLC 562
++ D CI CG C C D +
Sbjct: 5 VDADACIGCGVCENLCPDVFQLGDDGKA--KVLQPETDLPCAKDA 47
Score = 26.0 bits (56), Expect = 3.7
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 496 GQAVQRVTNYTELDNKKQVVALINDDMCINCGKCYMAC 533
G + +L + + L + +C
Sbjct: 14 GVCENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSC 51
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 34.6 bits (79), Expect = 0.048
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 14/121 (11%)
Query: 30 DIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVKIECERSLSTRDITIEKLRKDGY 89
D + +LP+ R+ + + ++ + G+ RS+ + + KD
Sbjct: 52 DDFTEIDSLPN-----INRIGVNRLKDYLKPLVAKGL-----RSVILFGVPLIPGTKDPV 101
Query: 90 TAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT 149
P I + E+ + G CG + + +
Sbjct: 102 GTAADDPAGPVIQGIKFIREYFPELYIICDVCL----CEYTSHGHCGVLYDDGTINRERS 157
Query: 150 V 150
V
Sbjct: 158 V 158
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 31.7 bits (71), Expect = 0.049
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 518 INDDMCINCGKCYMACND-SGYQAITFHPETHQAHVT---------DECTGCTLCLSI 565
++ C+ CG+C AC + A+ F + + + C C C+
Sbjct: 16 VDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIA 73
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId:
879]}
Length = 58
Score = 30.7 bits (69), Expect = 0.058
Identities = 6/45 (13%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 520 DDMCINCGKCYMACNDSGYQAITFHPETHQAHVTDECTGCTLCLS 564
+D C+ C C C D + +
Sbjct: 5 NDDCMACEACVEICPDVFEMNEEGDKAVVINP-DSDLDCVEEAID 48
Score = 27.3 bits (60), Expect = 1.0
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 509 DNKKQVVALINDDMCINCGKCYMAC 533
+ + V + D + +C
Sbjct: 26 EEGDKAVVINPDSDLDCVEEAIDSC 50
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 33.7 bits (76), Expect = 0.059
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 710 IAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
A ++ G I S + A + G + + A+
Sbjct: 177 EALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPK 219
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 33.5 bits (75), Expect = 0.060
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 512 KQVVALINDDMCINCGKCYMAC------NDSGYQAITFHPETHQAHVTDECTGCTLCLSI 565
+Q +I+ C +C C+M C N+ + ++ G I
Sbjct: 2 EQYYMVIDVAKCQDCNNCFMGCMDEHELNEWPGYTASMQRGHRWMNIERRERGTYPRNDI 61
Query: 566 LIASIMCTYNKD 577
C + ++
Sbjct: 62 NYRPTPCMHCEN 73
Score = 29.2 bits (64), Expect = 1.7
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 515 VALINDDMCINCGKCYMACNDSGYQAITFHPETHQ-------AHVTDECTG---CTLCLS 564
+ LI+ + + C Y + ++ E + AH+ D+ + C
Sbjct: 91 IVLIDPEKAKGKKELLDTCP---YGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAH 147
Query: 565 ILIASIMCTYNKDDWLELSKKTEKAGADAL 594
+ + + K ++KK E+ G + +
Sbjct: 148 NCGSFVY-EFLKTTPEAMAKKVEEEGLEVI 176
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 33.8 bits (76), Expect = 0.068
Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 61/228 (26%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVV----------------------FRKGCTNIRA 187
++V+GAG + +A +V V+ +
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTG 65
Query: 188 VPEEVQLAWEEKCEFLPFMSPVQVDV------KDNKIAGMQFNRTEQNEKGEWVE----- 236
+ + V+ + K+ ++G+ + E +
Sbjct: 66 ANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF 125
Query: 237 -----------------DEEQRIKLKANYIISAFGSTLLDNDV---------LEAIKPVK 270
+ L YI+ A GS + LE V+
Sbjct: 126 GALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKA-GVE 184
Query: 271 LDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
+ K G +V+ T+V ++ GD + T ++N+G +
Sbjct: 185 VAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTV 231
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 32.8 bits (74), Expect = 0.074
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 507 ELDNKKQVVALINDDM--CINCGKCYMACND-SGYQAITFHPETHQAHVT--DECTGCTL 561
+D + + D CI+C +C + G + + F + D
Sbjct: 68 HVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGF 127
Query: 562 C 562
Sbjct: 128 S 128
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 33.3 bits (74), Expect = 0.080
Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 21/191 (10%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG-------CTNIRAVPEEVQLAWEEKCEF 202
VIVLG+ ++ L + + + KG + +V+ +
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62
Query: 203 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD--- 259
M V+V N + Q + V EE+ I LD
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122
Query: 260 NDVLEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSD----------TTVESVN 309
+ ++L G + + TS P VF GD + +
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMR-TSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 310 DGKTAAWHIHK 320
G+ A ++ +
Sbjct: 182 QGRFAVKNLEE 192
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 33.3 bits (75), Expect = 0.093
Identities = 28/221 (12%), Positives = 55/221 (24%), Gaps = 55/221 (24%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG-----CTNIRAVPE-------------- 190
V+++G G + A A + G V ++G C N+ +P
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMH 66
Query: 191 --------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGE--------- 233
+V + V I + KG
Sbjct: 67 TEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKI 126
Query: 234 WVEDEEQRIKLKANYIISAFGSTLL----------------DNDVLEAIKPVKLDKYGYP 277
V + I + ++ E I +++DK G
Sbjct: 127 RVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKI-GLEVDKRGRL 185
Query: 278 EVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
++ + P + GD ++ +G A +
Sbjct: 186 VID-DQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEML 225
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 32.1 bits (72), Expect = 0.11
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 141 ESLPI---LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAW 196
+SL + LK ++++G G+ + G K+ +V +I +
Sbjct: 3 KSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNK 61
Query: 197 EEK 199
++
Sbjct: 62 DQP 64
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.5 bits (73), Expect = 0.11
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 134 LCGGCKKESLPILK----GTVIVLGAGDTAFDC-ATSALRCGANKVLVV 177
L G +L TV ++G D A + A A+ G L +
Sbjct: 131 LASGIPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 179
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 32.7 bits (73), Expect = 0.14
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 687 KLTTYGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICS 746
+L G A + V + K+ P +L GI + + + I+ G V + S
Sbjct: 146 ELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLAS 205
Query: 747 AVQN-QDFT-VVDDYITGL 763
V +D + D ++G+
Sbjct: 206 GVTKAKDPEKAIWDLVSGI 224
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 65
Score = 30.0 bits (67), Expect = 0.15
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 518 INDDMCINCGKCYMACNDSGYQAITFHPE 546
++ + C+ CG CY C + F PE
Sbjct: 40 VDVEKCMYCGNCYTMCP---GMPL-FDPE 64
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio
vulgaris [TaxId: 881]}
Length = 69
Score = 29.7 bits (67), Expect = 0.19
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 509 DNKKQVVALINDDMCINCGKCYMAC 533
D K +A I ++ C+ CG CY C
Sbjct: 37 DKKVNTIA-IKNERCMYCGNCYTMC 60
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId:
274]}
Length = 77
Score = 30.1 bits (67), Expect = 0.22
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 516 ALINDDMCINCGKCYMACNDSGYQAITFHPET 547
I+ + CI+CG C AC AI +
Sbjct: 32 FYIHPEECIDCGACVPACP---VNAIYPEEDV 60
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 31.7 bits (71), Expect = 0.27
Identities = 26/214 (12%), Positives = 49/214 (22%), Gaps = 31/214 (14%)
Query: 566 LIASIMCTY-NKDDWLELSKKTEKAGADALELNLSCPHGMGE----RGMGLACGQDPEMV 620
I I + E + + GAD +EL + C + + +
Sbjct: 19 FIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTM 78
Query: 621 RNISLWVRSSVKIPFFVKLTPNITNITDIAKAAYEGKADGVSAINTVSGLMSLSADGNPW 680
+ +R + + A +A I ++ + +
Sbjct: 79 DAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 138
Query: 681 PAVGTKKLTTYGGVSGNATRPMGLKAVSSIAKMFPNF----------------------- 717
+ + KA +
Sbjct: 139 KNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKV 198
Query: 718 ---PILGIGGIDSADVALQFIQAGAHAVQICSAV 748
P+ GI + Q Q GA V I SA+
Sbjct: 199 TNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAM 232
>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
p450 systems {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 31.4 bits (70), Expect = 0.31
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 21/77 (27%)
Query: 144 PILKG-TVIVLGAGDTAFDCATSALR--------------------CGANKVLVVFRKGC 182
P L T ++LG G+ A D A L V +V R+G
Sbjct: 35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94
Query: 183 TNIRAVPEEVQLAWEEK 199
+ +E++ +
Sbjct: 95 LQVAFTIKELREMIQLP 111
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 30.7 bits (68), Expect = 0.54
Identities = 26/206 (12%), Positives = 59/206 (28%), Gaps = 38/206 (18%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVPEEVQLAWEEK---CEF 202
++++G G + A A + G ++V + C NI +P + + E+
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASR 66
Query: 203 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR--------------------I 242
SP+ + V ++ Q + +
Sbjct: 67 FTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQV 126
Query: 243 KLKANYIISAFGSTLLDNDVLEAIKPVKLDKYGYPEVNYTT----------MATSVPGVF 292
++ I + +E + + + ++ TS+ V+
Sbjct: 127 EVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVW 186
Query: 293 CGGDTANLSDTTVESVNDGKTAAWHI 318
GD A ++ G+ A I
Sbjct: 187 AIGDVAGEPMLAHRAMAQGEMVAEII 212
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 30.6 bits (68), Expect = 0.59
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 701 PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQNQD 752
G+ + ++ + + PI+GIGGI + A IQAGA V + SA+ +
Sbjct: 156 VQGVSLIEAVRRQGISIPIVGIGGITIDNAA-PVIQAGADGVSMISAISQAE 206
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 30.8 bits (68), Expect = 0.60
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 208
VIV+GAG + A + + G K ++ + + L S
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSS 63
Score = 30.4 bits (67), Expect = 0.70
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 269 VKLDKYGYPEVNYTTMATSVPGVFCGGDTANLSDTTVESVNDGKTAAWHI 318
V LD+ G+ V+ ATSVPGV+ GD + ++ +G A I
Sbjct: 173 VTLDERGFIYVDDY-CATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERI 221
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 28.1 bits (62), Expect = 1.5
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 143 LPI---LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 198
LPI L+ +++G GD A A L GA + V E L E
Sbjct: 4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFIPQFTVWANEGMLTLVE 62
Query: 199 K 199
Sbjct: 63 G 63
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 29.0 bits (63), Expect = 1.6
Identities = 23/186 (12%), Positives = 56/186 (30%), Gaps = 15/186 (8%)
Query: 150 VIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 208
V+V+G G A + +V ++ + EV +
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY-- 62
Query: 209 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDNDV------ 262
D + + + + + + + + A G L+ + +
Sbjct: 63 ---DGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGK 119
Query: 263 LEAIKPVKLDKYGYPEVNYTTMATSVPGVFCGGDTA---NLSDTTVESVNDGKTAAWHIH 319
+ I + D P T ++ G+ GD + + + + + GK AA +
Sbjct: 120 IAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVV 179
Query: 320 KYIQEK 325
++ +
Sbjct: 180 VLLKGE 185
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 29.1 bits (64), Expect = 1.8
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 566 LIASIMCTY-NKDDWLELSKKTEKAGADALELNLSCPHGMGE 606
+ + + L++ AGADALEL + + +
Sbjct: 19 FVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLAD 60
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId:
2336]}
Length = 118
Score = 28.0 bits (62), Expect = 2.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 700 RPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGA 739
G+ A+ I K+ PN I+ + + ++ I+AGA
Sbjct: 58 EMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGA 97
>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase,
small subunit {Desulfovibrio gigas [TaxId: 879]}
Length = 214
Score = 29.1 bits (64), Expect = 2.0
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 517 LINDDMCINCGKCYMACND 535
++ C C C +AC
Sbjct: 5 FVDTTRCTACRGCQVACKQ 23
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 28.5 bits (63), Expect = 2.2
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 140 KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 198
+ L L TV+V+GAG+ A S + G VLV R + ++
Sbjct: 16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY-ERAVELARDLGGEAVR 74
Query: 199 KCEFLPFMSPVQV 211
E + ++ V
Sbjct: 75 FDELVDHLARSDV 87
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
{Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 60 LVKDLGVKIECERSLSTRDIT-IEKLRKDGYTAIFIGIGKPNANVIPIFQGLTE 112
+ + LG+ + E S +D+ I + G++ IF + N I E
Sbjct: 1 MERKLGISLYPEHSTKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKE 54
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 29.1 bits (64), Expect = 2.6
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 337 PKFMSHIDLVDISVEICGLKFPNPFGLASAPPTTASSMVRRAFENGW 383
PK + + VDIS ++ G PF ++ T +
Sbjct: 71 PKILVDVRKVDISTDMLGSHVDVPFYVS---ATALCKLGNPLEGEKD 114
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 27.7 bits (61), Expect = 3.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 703 GLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGA 739
GL I + P+ P++ + G +A+Q IQ GA
Sbjct: 59 GLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGA 95
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.5 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVP 189
+IV+G G A A R A KV +V + C N+ VP
Sbjct: 4 LIVIGGGSGGMAAARRAARHNA-KVALVEKSRLGGTCVNVGCVP 46
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 28.0 bits (62), Expect = 4.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 723 GGIDSADVALQFIQAGA 739
GGI S A+ + AGA
Sbjct: 199 GGIRSGIDAVLAVGAGA 215
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 27.2 bits (60), Expect = 4.1
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 701 PMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGA 739
G++ + + + N ++ + D+ + + GA
Sbjct: 58 MDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGA 96
>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 27.3 bits (60), Expect = 4.4
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 149 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-QLAWEEKCEFLPFMS 207
V V+G G+TA + A + L+ R G + + + + +
Sbjct: 29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRT 88
Query: 208 PVQVDVKDNKIAGMQFNRTEQNEKGEWVE 236
+V + G++ T+ ++ E ++
Sbjct: 89 LEEVTGDQMGVTGVRLRDTQNSDNIESLD 117
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 28.1 bits (62), Expect = 4.5
Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 26/147 (17%)
Query: 595 ELNLSCPHGMGERGMGLACGQDPEMVRNISLWVRSSVKIPFFVKLTPNITNITDIAKAAY 654
E+++ P+ G + + +K+ + I ++ +
Sbjct: 100 EVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISI 159
Query: 655 EGKADGVSAINTVSGLMSLSADGNPWPA-VGTKKLTTYGGVSGNATRPMGLKAVSSIAKM 713
+ AD + S A + ++ + +G K
Sbjct: 160 KAGADFIKT----------STGKVAVNATPESARIMMEVIRDMGVEKTVGFKPA------ 203
Query: 714 FPNFPILGIGGIDSADVALQFIQAGAH 740
GG+ +A+ A +++
Sbjct: 204 ---------GGVRTAEDAQKYLAIADE 221
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 27.5 bits (60), Expect = 5.0
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 691 YGGVSGNATRPMGLKAVSSIAKMFPNFPILGIGGIDSADVALQFIQAGAHAVQICSAVQN 750
+ + R +GL+ + I + P++ IGGI+ + + ++ G + + SAV
Sbjct: 129 FPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGINKDNAR-EVLKTGVDGIAVISAVMG 186
Query: 751 QD 752
+
Sbjct: 187 AE 188
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 28.0 bits (61), Expect = 5.3
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 272 DKYGYPEVNYTTMATSVPGVFCGGDTANLSD--TTVESVNDGKTAAWHIHKYIQEKNNLT 329
++Y T+V G+F GD A + + S +G+ AA ++I E+
Sbjct: 269 EEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFILEQKPNP 328
Query: 330 VPDK 333
D
Sbjct: 329 EIDD 332
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 28.0 bits (61), Expect = 5.4
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK--GCTNIRAVPEEVQLAWEEKCEFLPFMS 207
V+++G+G A SA GA KV+++ ++ N + + A + L
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 84
Query: 208 PVQVDVKDNKIAGMQFNRTEQN 229
Q+ + D G N E
Sbjct: 85 KKQIMIDDTMKGGRNINDPELV 106
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 27.6 bits (61), Expect = 5.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 723 GGIDSADVALQFIQAGA 739
GGI + A+ I+AGA
Sbjct: 182 GGIRDLETAISMIEAGA 198
>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB)
{Bacillus subtilis [TaxId: 1423]}
Length = 239
Score = 27.4 bits (60), Expect = 6.0
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 538 YQAITFHPETHQAHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGADALELN 597
F+ + +Q + + S+ I + L+K+ + L
Sbjct: 59 SITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ 118
Query: 598 LSCPHGMGER 607
L +R
Sbjct: 119 LENTTFCHDR 128
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 27.2 bits (60), Expect = 6.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 723 GGIDSADVALQFIQAGA------HAVQICS 746
GGI + AL+ ++AGA V + +
Sbjct: 182 GGIRDRETALRMLKAGASRLGTSSGVALVA 211
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 27.3 bits (60), Expect = 6.2
Identities = 27/164 (16%), Positives = 44/164 (26%), Gaps = 7/164 (4%)
Query: 133 GLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV 192
K I + V+V G G ++ L G V+ V RKG N +
Sbjct: 12 AFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCL 71
Query: 193 QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISA 252
E + A + N + E K+ +I A
Sbjct: 72 NEYHLEIARITNPERLSGDLETALEGADFFIGVSRGN-----ILKPEWIKKMSRKPVIFA 126
Query: 253 FGSTLLDNDVLEAIKPVKLDKYGYP--EVNYTTMATSVPGVFCG 294
+ + + D A + N + PG+ G
Sbjct: 127 LANPVPEIDPELAREAGAFIVATGRSDHPNQVNNLLAFPGIMKG 170
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 27.5 bits (59), Expect = 6.4
Identities = 3/31 (9%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 180
++ A T A ++ + +++
Sbjct: 183 RLIADATFTGHRVAREIEEANP-QIAIPYKR 212
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 27.2 bits (59), Expect = 7.1
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 150 VIVLGAGDTAFDCATSALRCGANKVLVVFRK----GCTNIRAVPEEVQLAWEEKCEFLPF 205
I +G G A G K ++ K C N+ VP++V + E +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHM 63
Query: 206 MSPVQ-VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 243
P D NK + E +
Sbjct: 64 YGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLG 102
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Actinobacillus pleuropneumoniae [TaxId: 715]}
Length = 155
Score = 26.9 bits (59), Expect = 7.1
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 550 AHVTDECTGCTLCLSILIASIMCTYNKDDWLELSKKTEKAGA 591
A + S+M D+ + G
Sbjct: 106 ATNPVLAPRLKKLDEVKGHSLMIHEGGDNHSDHPAPLGGGGP 147
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 27.2 bits (60), Expect = 7.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 723 GGIDSADVALQFIQAGA 739
GGI + + A++ I GA
Sbjct: 215 GGIRTFEDAVKMIMYGA 231
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 320
Score = 27.2 bits (60), Expect = 9.7
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 30 DIERPVAALPDSSEIPQYRLPFDAVNFEVELVKDLGVK 67
D +P+ +LP R + + + + G++
Sbjct: 32 DDIQPITSLPG-----VARYGVKRLEEMLRPLVEEGLR 64
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 213
Score = 26.6 bits (59), Expect = 9.7
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 15/65 (23%)
Query: 367 PPTTASSMVRRAFENGWGF-AVTKT---------FSLQ----KDMVT-NVSPRIVKGTTS 411
S++ + ++ G F + F+L ++ RI G+ +
Sbjct: 117 AIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALHFAYDGSFKAIGIASRIDGGSNA 176
Query: 412 RHLYG 416
H Y
Sbjct: 177 DHWYS 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,090,580
Number of extensions: 148376
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 134
Length of query: 842
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 749
Effective length of database: 1,130,706
Effective search space: 846898794
Effective search space used: 846898794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)