BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16200
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CHR6|DPYD_MOUSE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Mus musculus GN=Dpyd
PE=2 SV=1
Length = 1025
Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 136/176 (77%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+++GY A FIGIG P IFQGLT+ GFYTSK FLP VA SSK G+C C L
Sbjct: 271 LKENGYRAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKSSKTGMCA-CH-SPL 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGALRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V VKD KI MQF RTEQ+E G WVEDEEQ ++LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKDGKIVAMQFVRTEQDETGNWVEDEEQTVRLKADVVISAFGSVLED 444
>sp|O89000|DPYD_RAT Dihydropyrimidine dehydrogenase [NADP(+)] OS=Rattus norvegicus
GN=Dpyd PE=2 SV=1
Length = 1025
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 135/176 (76%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+++GY A FIGIG P IFQGLT+ GFYTSK FLP VA SK G+C C L
Sbjct: 271 LKENGYKAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKGSKPGMCA-CH-SPL 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSVRGAVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFANIRAVPEEMELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V VKD KI GMQF RTEQ+E G WVEDEEQ ++LKA+ +IS FGS L D
Sbjct: 389 PFLSPRKVIVKDGKIVGMQFVRTEQDETGNWVEDEEQIVRLKADVVISPFGSVLDD 444
>sp|Q5R895|DPYD_PONAB Dihydropyrimidine dehydrogenase [NADP(+)] OS=Pongo abelii GN=DPYD
PE=2 SV=1
Length = 1025
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 134/176 (76%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L++ GY A FIGIG P N IFQGLT++ GFYTSK FLP VA SK G+C C L
Sbjct: 271 LKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCA-CH-SPL 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSIRGVVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V VK +I MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSD 444
>sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD
PE=1 SV=2
Length = 1025
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 134/176 (76%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L++ GY A FIGIG P N IFQGLT++ GFYTSK FLP VA SK G+C C L
Sbjct: 271 LKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCA-CH-SPL 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSIRGVVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V VK +I MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSD 444
>sp|Q28943|DPYD_PIG Dihydropyrimidine dehydrogenase [NADP(+)] OS=Sus scrofa GN=DPYD
PE=1 SV=1
Length = 1025
Score = 226 bits (577), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 135/176 (76%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+++GY A FIGIG P IFQGLT++ GFYTSK FLP VA SSK G+C C L
Sbjct: 271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA-CH-SPL 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V VK +I +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRD 444
>sp|Q28007|DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Bos taurus GN=DPYD
PE=1 SV=1
Length = 1025
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/176 (65%), Positives = 133/176 (75%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+++GY A FIGIG P IFQGLT++ GFYTSK FLP VA SSK G+C C L
Sbjct: 271 LKEEGYKAAFIGIGLPEPKKDHIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA-CHSPLL 329
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
I +GTVIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFL
Sbjct: 330 SI-RGTVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEVELAREEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V VK +I MQF RTEQ+E G+W ED +Q LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDGDQIACLKADVVISAFGSVLSD 444
>sp|Q18164|DPYD_CAEEL Dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis elegans
GN=dpyd-1 PE=3 SV=2
Length = 1059
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 141/178 (79%), Gaps = 1/178 (0%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKES 64
KL++ G A+FIGIG P + P+F+GLT E GFYTSK +LP VA +SK G+CG CK+
Sbjct: 283 KLKEQGAAAVFIGIGNPEPKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCG-CKRTP 341
Query: 65 LPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
LP ++G V+VLGAGDTA DCATSALRCGA++V + FRKG T IRAVPEE++ A EEKCEF
Sbjct: 342 LPTMRGRVVVLGAGDTAMDCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEF 401
Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182
LPF +P +++VKD +I ++FN+TEQ++ G+W EDEEQ + LK +Y+ISAFGSTL ++
Sbjct: 402 LPFSAPRKINVKDGRIVSIEFNKTEQDDNGKWYEDEEQIVILKCDYVISAFGSTLKED 459
>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)]
OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2
Length = 1053
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 140/178 (78%), Gaps = 1/178 (0%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKES 64
KL+ G A+FIGIG P + P+F+GLT E GFYTSK +LP VA +SK G+CG CK+
Sbjct: 283 KLKSQGAAAVFIGIGNPEPKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCG-CKRTP 341
Query: 65 LPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
LP ++G V+VLGAGDTA DCATSALRCGA++V + FRKG T IRAVPEE++ A EEKCEF
Sbjct: 342 LPTMRGRVVVLGAGDTAMDCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEF 401
Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182
LPF +P +++VKD +I ++FN+TEQ++ G+W EDEEQ + LK +Y+ISAFGSTL ++
Sbjct: 402 LPFSAPRKINVKDGRIVSIEFNKTEQDDNGKWYEDEEQIVILKCDYVISAFGSTLKED 459
>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd
PE=2 SV=1
Length = 1022
Score = 213 bits (541), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 112/176 (63%), Positives = 138/176 (78%), Gaps = 2/176 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+++GY ++IGIG P AN IF+GLT E GFYTSK FLP VA +SK G+C C+ + L
Sbjct: 271 LKEEGYQVVYIGIGLPQANRDKIFEGLTTEQGFYTSKDFLPLVAKASKIGMCN-CRSQ-L 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P L G VIVLGAGDTAFDCATSALRCGA +V VVFRKG TNIRAVPEE++ A EEKCEFL
Sbjct: 329 PKLHGNVIVLGAGDTAFDCATSALRCGARRVFVVFRKGFTNIRAVPEEMEAAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
PF+SP +V K+ +++G++F RTEQ + G W+ DEEQ + LKA++IISAFGS L D
Sbjct: 389 PFLSPHEVIKKNGRVSGLRFCRTEQQDDGTWIVDEEQIVHLKADFIISAFGSMLND 444
>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium
discoideum GN=pyd1 PE=2 SV=1
Length = 1009
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+K GY AI++GIG P + P+F LT + GF++SK FLP+V+ +SK G+CG CK + L
Sbjct: 270 LQKQGYEAIYLGIGMPEPKIDPVFNELTSDQGFFSSKEFLPKVSKASKAGMCG-CKSQ-L 327
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P L G VIVLGAGDTAFDCATSA RCGA++V V FR+G +++RAVPEEV +A +E+CEFL
Sbjct: 328 PQLNGRVIVLGAGDTAFDCATSAFRCGASRVTVCFRRGFSDMRAVPEEVDIAKDERCEFL 387
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179
P++ P QV +D K+ M+F +TE+ + G + DE+Q ++K +YIISAFGS +
Sbjct: 388 PYVLPKQVIKRDGKVVAMEFYKTEKGDDGNYSVDEDQFFRVKCDYIISAFGSQI 441
>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain
K12) GN=gltD PE=1 SV=3
Length = 472
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 11 YTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPIL 68
Y A+F+G+G + + GL E G Y + FL +A + + G + E +
Sbjct: 232 YDAVFLGVGTYQS----MRGGLENEDADGVYAALPFL--IANTKQLMGFGETRDEPFVSM 285
Query: 69 KGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127
+G V+VLG GDTA DC +++R GA V +R+ N+ EV+ A EE EF
Sbjct: 286 EGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFN 345
Query: 128 MSPVQVDVKDN-KIAGMQFNRTEQNE-------KGEWVEDEEQRIKLKANYIISAFG 176
+ P+ ++V N K++G++ RTE E + E V E + A+ +I AFG
Sbjct: 346 VQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIV--PADAVIMAFG 400
>sp|P37127|AEGA_ECOLI Protein AegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2
Length = 659
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 19/177 (10%)
Query: 11 YTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPIL 68
Y A+F+G+G + + GL E G Y + FL ++ K + G + P +
Sbjct: 413 YDAVFVGVGTYRS----MKAGLPNEDAPGVYDALPFL----IANTKQVMGLEELPEEPFI 464
Query: 69 KGT---VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
V+VLG GDTA DC +ALR GA+ V +R+ N+ +EV+ A EE F
Sbjct: 465 NTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFE 524
Query: 126 PFMSPVQVDVKDN-KIAGMQFNRTEQNE-----KGEWVEDEEQRIKLKANYIISAFG 176
+ PV +++ + + G++F RT E + V E + A+ +I AFG
Sbjct: 525 FNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFG 581
>sp|Q8XD75|YGFK_ECO57 Uncharacterized protein YgfK OS=Escherichia coli O157:H7 GN=ygfK
PE=4 SV=1
Length = 1032
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 63 ESLPIL----KGT-------VIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNIRAV 110
+SLP L KGT V+V+GAG+TA DCA +ALR G K VV+R+ + A
Sbjct: 661 KSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATVVYRRSLQEMPAW 720
Query: 111 PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW--VEDEEQRIKLKA 168
EE + A + EF +P + D D + + E +EKG VE E + L
Sbjct: 721 REEYEEALHDGVEFRFLNNPERFDA-DGTLTLRVMSLGEPDEKGRRRPVETNET-VTLHV 778
Query: 169 NYIISAFG 176
+ +I+A G
Sbjct: 779 DSLITAIG 786
>sp|Q46811|YGFK_ECOLI Uncharacterized protein YgfK OS=Escherichia coli (strain K12)
GN=ygfK PE=4 SV=1
Length = 1032
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 63 ESLPIL----KGT-------VIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNIRAV 110
+SLP L KGT V+V+GAG+TA DCA +ALR G K +V+R+ + A
Sbjct: 661 KSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAW 720
Query: 111 PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW--VEDEEQRIKLKA 168
EE + A + EF +P + D D + + E +EKG VE E + L
Sbjct: 721 REEYEEALHDGVEFRFLNNPERFDA-DGTLTLRVMSLGEPDEKGRRRPVETNET-VTLLV 778
Query: 169 NYIISAFG 176
+ +I+A G
Sbjct: 779 DSLITAIG 786
>sp|Q46820|YGFT_ECOLI Uncharacterized protein YgfT OS=Escherichia coli (strain K12)
GN=ygfT PE=3 SV=2
Length = 639
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 37/186 (19%)
Query: 11 YTAIFIGIGK--------PNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKK 62
Y A+FIG+G P+ + + Q L F T+ T + L G +
Sbjct: 396 YDAVFIGVGTYGMMRADLPHEDAPGVIQALP----FLTAHT----------RQLMGLPES 441
Query: 63 ESLPI--LKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE 119
E P+ ++G V+VLG GDT DC +++R A V +R+ ++ +EV A E
Sbjct: 442 EEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNARE 501
Query: 120 EKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQR--------IKLKANY 170
E EF + P + +D ++ + RT E G D +R +L A+
Sbjct: 502 EGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPG---PDGRRRPRPVAGSEFELPADV 558
Query: 171 IISAFG 176
+I AFG
Sbjct: 559 LIMAFG 564
>sp|Q05756|GLTD_AZOBR Glutamate synthase [NADPH] small chain OS=Azospirillum brasilense
GN=gltD PE=1 SV=3
Length = 482
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 64 SLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCE 123
SL V+VLG GDTA DC +A+R GA V ++R+ N+ EV A EE E
Sbjct: 285 SLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVE 344
Query: 124 FLPFMSP 130
F+ +P
Sbjct: 345 FIWQAAP 351
>sp|O08340|GLTD_RHOSH Putative glutamate synthase [NADPH] small chain OS=Rhodobacter
sphaeroides GN=gltD PE=3 SV=1
Length = 413
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 45 LPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104
L + S+++ + L V+V+G GDTA DC +A+R GA V ++R+
Sbjct: 201 LSYLTASNRRSFGDEVDDDGLDASGKRVVVIGGGDTAMDCVRTAIRQGATSVKCLYRRDR 260
Query: 105 TNIRAVPEEVQLAWEEKCEFLPFMSP 130
N+ EV A EE EF+ +P
Sbjct: 261 ANMPGSQREVANAEEEGVEFVWLSAP 286
>sp|Q8U195|SUDHA_PYRFU Sulfide dehydrogenase subunit alpha OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=sudA PE=1
SV=1
Length = 474
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKK 62
T + ++ Y AIFIG G + P + G+ G Y++ FL R+ +
Sbjct: 232 TFEELREEYDAIFIGTGAGTPRIYP-WPGVNLN-GIYSANEFLTRINLMKAYKF----PE 285
Query: 63 ESLPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102
PI G V V+G G+TA D A SALR GA +V +++R+
Sbjct: 286 YDTPIKVGKRVAVIGGGNTAMDAARSALRLGA-EVWILYRR 325
>sp|Q8ENX4|FENR2_OCEIH Ferredoxin--NADP reductase 2 OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=OB2351
PE=3 SV=1
Length = 328
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 131
V++LG GD+A D A + A KV +V R+ RA V E E L +P+
Sbjct: 156 VVLLGGGDSAVDWALMLEKIAA-KVTLVHRR--DQFRAHEHSVNQLKESSVEILTPYAPI 212
Query: 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161
V+ D KI +Q Q KGE + D E
Sbjct: 213 NVEASD-KIEKIQL----QEVKGEKIIDVE 237
>sp|P44493|AMIB_HAEIN Probable N-acetylmuramoyl-L-alanine amidase AmiB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=amiB PE=3 SV=1
Length = 432
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 98 VVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQF--NRTEQNEKGE 155
V+ RK I +VPE ++A + K +L + D + A + NR +E G+
Sbjct: 71 VLTRKSDYYI-SVPERSEIARKFKANYLISIHADSSKSPDRRGASVWVLSNRRANDEMGQ 129
Query: 156 WVEDEEQRIKL 166
W+ED+E+R +L
Sbjct: 130 WLEDDEKRSEL 140
>sp|B9L0Q1|HEM1_THERP Glutamyl-tRNA reductase OS=Thermomicrobium roseum (strain ATCC
27502 / DSM 5159 / P-2) GN=hemA PE=3 SV=1
Length = 406
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 37 GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRC 91
G+ T K L RVA LC + V+VLGAG+T D + RC
Sbjct: 155 GWSTGKRSLARVAVREAARLCSDLQS-------ARVLVLGAGETGRDVIAALCRC 202
>sp|A8GS72|FENR_RICRS Ferredoxin--NADP reductase OS=Rickettsia rickettsii (strain Sheila
Smith) GN=A1G_03605 PE=3 SV=1
Length = 340
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV----QLAWEEKCEFLP 126
+++ G GD+A D A S L ANK+ +V R+ A PE V +A +K E
Sbjct: 152 NIVIAGGGDSAVDWAIS-LSDIANKIYLVHRR--DKFTAAPESVRQLRHIAETDKIEL-- 206
Query: 127 FMSPVQVDVKDNKIAGMQFNRTEQNE---KGEWVEDEEQRI-KLKANYIISAFG 176
I G Q N + N + V+D + KL AN ++ FG
Sbjct: 207 -------------ITGYQLNALDGNNSELQSVIVKDLQNNTRKLDANILLPFFG 247
>sp|Q92HY3|FENR_RICCN Ferredoxin--NADP reductase OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC0637 PE=3 SV=1
Length = 340
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV----QLAWEEKCEFLP 126
+++ G GD+A D A S L ANK+ +V R+ A PE V +A +K E
Sbjct: 152 NIVIAGGGDSAVDWAIS-LSDIANKIYLVHRR--DKFTAAPESVRQLRHIAETDKIEL-- 206
Query: 127 FMSPVQVDVKDNKIAGMQFNRTEQNE---KGEWVEDEEQRI-KLKANYIISAFG 176
I G Q N + N + V+D + KL AN ++ FG
Sbjct: 207 -------------ITGYQLNALDGNNSELQSVIVKDLQNNTRKLDANILLPFFG 247
>sp|Q6BN00|IML1_DEBHA Vacuolar membrane-associated protein IML1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=IML1 PE=3 SV=2
Length = 1560
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 93 ANKVLVVFRKGCTN---IRAVPEEVQLAWEEKC 122
+ KV++ FR CTN +R + +E + W EKC
Sbjct: 1519 SQKVMLKFRSACTNEKILRGIFKEAKENWREKC 1551
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GLT1 PE=1 SV=2
Length = 2145
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVL 97
VIV+G GDT DC +++R GA VL
Sbjct: 1924 VIVVGGGDTGNDCLGTSVRHGAASVL 1949
>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain
168) GN=gltB PE=2 SV=2
Length = 493
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKV 96
VIV+G GDT DC +ALR A V
Sbjct: 295 VIVIGGGDTGADCVATALRQKAKSV 319
>sp|Q6X9T8|HCST_RAT Hematopoietic cell signal transducer OS=Rattus norvegicus GN=Hcst
PE=2 SV=1
Length = 79
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 44 FLPRVATSSKKGLCGGCKKESLPILKGTV 72
LP A+ + +G C GC SLP+L G V
Sbjct: 12 LLPVAASQTNEGSCSGCGPLSLPLLAGLV 40
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
Length = 2111
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 11 YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG 70
Y A+ + G +PI + G + + FL + ++K L K + KG
Sbjct: 1843 YDAVVLASGSTVPRDLPIPN--RDSKGIHFAMEFLHK---NTKSLLDSELKDGNYISAKG 1897
Query: 71 -TVIVLGAGDTAFDCATSALRCGANKV 96
VIV+G GDT DC +++R GA V
Sbjct: 1898 KDVIVIGGGDTGNDCLGTSVRHGAKSV 1924
>sp|A8GNK2|FENR_RICAH Ferredoxin--NADP reductase OS=Rickettsia akari (strain Hartford)
GN=A1C_03465 PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 26/114 (22%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLP 126
+++ G GD+A D A S L ANK+ +V R+ A PE V+ +A K E
Sbjct: 152 NIVIAGGGDSAVDWAIS-LSEIANKIYLVHRR--DKFTAAPESVRQLRDIAETGKIEL-- 206
Query: 127 FMSPVQVDVKDNKIAGMQFNRTEQNE---KGEWVEDEEQRI-KLKANYIISAFG 176
+ G Q N + N + V+D + I KL AN ++ FG
Sbjct: 207 -------------VTGYQLNALDGNNGTLQTVIVKDLQNNIRKLDANVLLPFFG 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,774,159
Number of Sequences: 539616
Number of extensions: 2723162
Number of successful extensions: 7865
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7815
Number of HSP's gapped (non-prelim): 53
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)