Query psy16200
Match_columns 183
No_of_seqs 137 out of 1194
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12831 putative oxidoreducta 99.9 3.3E-25 7.2E-30 190.1 21.0 174 2-182 219-399 (464)
2 PRK12779 putative bifunctional 99.9 3.5E-25 7.6E-30 202.6 20.0 175 1-181 383-564 (944)
3 PRK12775 putative trifunctiona 99.9 6.2E-25 1.3E-29 202.2 21.0 175 2-181 508-688 (1006)
4 PRK12778 putative bifunctional 99.9 2.9E-24 6.2E-29 193.7 21.4 175 1-181 508-688 (752)
5 TIGR01316 gltA glutamate synth 99.9 5.4E-24 1.2E-28 182.0 20.7 174 2-182 211-390 (449)
6 PRK06567 putative bifunctional 99.9 1.2E-23 2.6E-28 189.8 18.3 174 1-182 488-731 (1028)
7 PRK11749 dihydropyrimidine deh 99.9 1.9E-22 4E-27 172.8 20.9 167 3-181 219-389 (457)
8 PRK12814 putative NADPH-depend 99.9 1.5E-22 3.3E-27 179.9 20.3 165 2-182 271-440 (652)
9 PRK12769 putative oxidoreducta 99.9 3.6E-22 7.7E-27 177.8 22.1 175 2-181 405-586 (654)
10 TIGR01318 gltD_gamma_fam gluta 99.9 5.7E-22 1.2E-26 170.2 21.8 174 3-181 220-400 (467)
11 PRK12809 putative oxidoreducta 99.9 4.3E-22 9.4E-27 176.7 21.1 176 2-181 388-569 (639)
12 PLN02852 ferredoxin-NADP+ redu 99.9 3.7E-22 8.1E-27 171.4 19.3 170 1-178 106-353 (491)
13 PRK09853 putative selenate red 99.9 7.2E-22 1.6E-26 179.9 18.4 166 2-182 615-782 (1019)
14 PRK12810 gltD glutamate syntha 99.9 1.6E-21 3.5E-26 167.6 19.6 167 4-181 223-402 (471)
15 TIGR03315 Se_ygfK putative sel 99.9 6.1E-21 1.3E-25 174.3 18.9 165 2-182 613-779 (1012)
16 PRK13984 putative oxidoreducta 99.9 1.4E-20 3.1E-25 166.2 20.2 170 3-182 362-541 (604)
17 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.4E-20 3.1E-25 160.2 14.7 136 10-182 135-275 (454)
18 COG0493 GltD NADPH-dependent g 99.9 4.7E-21 1E-25 163.2 11.4 174 1-181 200-387 (457)
19 PRK12771 putative glutamate sy 99.8 3E-19 6.6E-24 156.6 20.9 159 9-181 221-382 (564)
20 TIGR01317 GOGAT_sm_gam glutama 99.8 3.7E-19 8E-24 153.6 19.2 168 9-181 227-417 (485)
21 PRK12770 putative glutamate sy 99.8 1.7E-18 3.6E-23 143.8 19.4 166 9-181 117-288 (352)
22 PRK06370 mercuric reductase; V 99.8 2.4E-18 5.3E-23 147.6 16.0 138 9-182 132-274 (463)
23 PRK07251 pyridine nucleotide-d 99.8 1.7E-18 3.6E-23 147.6 14.0 136 8-182 116-256 (438)
24 TIGR02053 MerA mercuric reduct 99.8 5.7E-18 1.2E-22 145.3 16.0 138 9-182 127-269 (463)
25 PRK08010 pyridine nucleotide-d 99.8 7.2E-18 1.6E-22 143.8 15.3 135 9-182 118-257 (441)
26 PRK07846 mycothione reductase; 99.8 9E-18 1.9E-22 143.8 15.6 135 9-182 127-265 (451)
27 TIGR01421 gluta_reduc_1 glutat 99.8 1.1E-17 2.3E-22 143.3 15.6 135 9-182 128-268 (450)
28 PRK06467 dihydrolipoamide dehy 99.8 1.1E-17 2.4E-22 143.9 15.8 137 9-182 135-277 (471)
29 PRK06912 acoL dihydrolipoamide 99.8 1.8E-17 3.8E-22 142.2 16.3 136 9-182 131-271 (458)
30 PRK06115 dihydrolipoamide dehy 99.8 2.4E-17 5.1E-22 141.7 17.0 138 9-182 135-279 (466)
31 PRK05249 soluble pyridine nucl 99.8 1.5E-17 3.2E-22 142.6 15.4 136 8-182 135-275 (461)
32 PRK10262 thioredoxin reductase 99.8 1.3E-17 2.7E-22 136.8 13.5 143 8-182 103-251 (321)
33 TIGR01438 TGR thioredoxin and 99.8 2.5E-17 5.4E-22 142.2 15.8 136 9-182 142-282 (484)
34 TIGR01423 trypano_reduc trypan 99.8 2.5E-17 5.5E-22 142.2 14.9 135 8-182 149-291 (486)
35 KOG0399|consensus 99.8 9.2E-18 2E-22 150.9 12.5 172 1-179 1862-2055(2142)
36 PLN02507 glutathione reductase 99.8 3.5E-17 7.6E-22 141.8 15.8 133 9-182 166-303 (499)
37 PRK05976 dihydrolipoamide dehy 99.7 5.7E-17 1.2E-21 139.5 16.5 139 8-182 140-284 (472)
38 PRK07845 flavoprotein disulfid 99.7 3.7E-17 8E-22 140.5 15.2 136 8-182 137-277 (466)
39 PRK07818 dihydrolipoamide dehy 99.7 5.4E-17 1.2E-21 139.4 16.2 137 9-182 134-276 (466)
40 PTZ00058 glutathione reductase 99.7 4.9E-17 1.1E-21 142.3 16.1 133 9-182 201-339 (561)
41 PRK06327 dihydrolipoamide dehy 99.7 7.3E-17 1.6E-21 139.0 16.4 139 9-182 144-287 (475)
42 KOG0404|consensus 99.7 9E-18 2E-22 129.0 9.5 145 10-182 112-258 (322)
43 PTZ00153 lipoamide dehydrogena 99.7 8.7E-17 1.9E-21 142.7 16.3 149 9-182 273-430 (659)
44 PRK06416 dihydrolipoamide dehy 99.7 1E-16 2.3E-21 137.4 16.2 137 8-182 132-275 (462)
45 COG0492 TrxB Thioredoxin reduc 99.7 7.7E-17 1.7E-21 131.3 14.3 136 10-182 103-241 (305)
46 TIGR01372 soxA sarcosine oxida 99.7 9.5E-17 2.1E-21 148.5 15.8 143 8-182 272-414 (985)
47 TIGR01350 lipoamide_DH dihydro 99.7 1.4E-16 3.1E-21 136.4 15.8 137 9-182 130-272 (461)
48 PRK09754 phenylpropionate diox 99.7 1.6E-16 3.5E-21 133.9 15.5 137 9-182 99-244 (396)
49 TIGR03452 mycothione_red mycot 99.7 1.3E-16 2.9E-21 136.6 15.1 135 9-182 130-268 (452)
50 PRK06116 glutathione reductase 99.7 1.9E-16 4.1E-21 135.5 15.8 133 9-182 130-268 (450)
51 PRK14727 putative mercuric red 99.7 1.2E-16 2.6E-21 137.8 14.7 133 9-182 149-286 (479)
52 PRK14989 nitrite reductase sub 99.7 9.4E-17 2E-21 146.2 14.5 140 9-182 100-248 (847)
53 TIGR02374 nitri_red_nirB nitri 99.7 1.1E-16 2.5E-21 145.0 14.6 139 9-182 95-241 (785)
54 TIGR01424 gluta_reduc_2 glutat 99.7 1.6E-16 3.5E-21 135.8 14.8 133 9-182 129-266 (446)
55 PLN02546 glutathione reductase 99.7 2.7E-16 5.8E-21 137.6 15.7 133 9-182 215-353 (558)
56 TIGR03140 AhpF alkyl hydropero 99.7 2.3E-16 5.1E-21 137.1 15.1 141 9-182 310-453 (515)
57 PRK13748 putative mercuric red 99.7 2E-16 4.4E-21 138.6 14.8 133 9-182 231-368 (561)
58 TIGR01292 TRX_reduct thioredox 99.7 5E-16 1.1E-20 125.1 15.1 139 9-181 99-240 (300)
59 PRK15317 alkyl hydroperoxide r 99.7 3.7E-16 8.1E-21 135.9 15.4 141 9-182 309-452 (517)
60 PTZ00052 thioredoxin reductase 99.7 3.8E-16 8.3E-21 135.3 15.4 134 8-182 142-281 (499)
61 PRK14694 putative mercuric red 99.7 4.2E-16 9.1E-21 134.0 15.0 133 9-182 139-276 (468)
62 PRK04965 NADH:flavorubredoxin 99.7 4.7E-16 1E-20 130.2 14.5 138 9-181 98-241 (377)
63 TIGR03385 CoA_CoA_reduc CoA-di 99.7 3.9E-16 8.5E-21 132.6 14.0 139 10-181 91-235 (427)
64 PRK06292 dihydrolipoamide dehy 99.7 9E-16 1.9E-20 131.5 15.6 136 9-182 129-271 (460)
65 KOG1335|consensus 99.7 1.2E-15 2.6E-20 125.1 11.6 138 11-183 174-318 (506)
66 PRK09564 coenzyme A disulfide 99.7 2.2E-15 4.8E-20 128.5 13.8 139 10-181 103-248 (444)
67 PTZ00188 adrenodoxin reductase 99.7 5E-15 1.1E-19 126.6 15.7 174 1-180 118-382 (506)
68 PRK13512 coenzyme A disulfide 99.6 3.6E-15 7.7E-20 127.3 14.0 136 9-182 104-244 (438)
69 KOG0405|consensus 99.6 1.1E-15 2.3E-20 124.1 9.7 132 9-182 152-290 (478)
70 TIGR03143 AhpF_homolog putativ 99.6 6.4E-15 1.4E-19 129.2 14.7 139 10-182 102-249 (555)
71 KOG1336|consensus 99.6 1E-14 2.3E-19 122.4 13.3 141 10-182 169-316 (478)
72 KOG4716|consensus 99.6 5.7E-15 1.2E-19 119.6 8.8 138 10-183 161-304 (503)
73 KOG1800|consensus 99.6 1.6E-14 3.4E-19 118.4 10.7 169 1-180 100-343 (468)
74 COG3634 AhpF Alkyl hydroperoxi 99.6 4E-14 8.7E-19 115.2 11.6 140 10-182 313-455 (520)
75 COG1251 NirB NAD(P)H-nitrite r 99.5 1.8E-14 3.9E-19 126.2 8.3 142 8-182 99-246 (793)
76 PLN02172 flavin-containing mon 99.5 2.3E-13 4.9E-18 116.9 10.3 130 9-182 160-291 (461)
77 PTZ00318 NADH dehydrogenase-li 99.5 5E-13 1.1E-17 113.7 11.8 147 8-181 111-282 (424)
78 TIGR03169 Nterm_to_SelD pyridi 99.4 3.3E-12 7.2E-17 106.3 14.7 137 8-181 93-245 (364)
79 COG1252 Ndh NADH dehydrogenase 99.4 1.2E-12 2.5E-17 109.9 11.1 145 7-181 96-264 (405)
80 PF00070 Pyr_redox: Pyridine n 99.4 8.8E-12 1.9E-16 82.1 9.8 73 71-146 1-78 (80)
81 PF13434 K_oxygenase: L-lysine 99.4 8.5E-12 1.8E-16 103.4 11.8 141 10-178 147-340 (341)
82 COG0446 HcaD Uncharacterized N 99.3 8.8E-11 1.9E-15 98.2 13.4 142 8-181 92-239 (415)
83 PF00743 FMO-like: Flavin-bind 99.2 3.7E-11 8.1E-16 104.9 9.2 82 9-109 137-222 (531)
84 KOG1346|consensus 99.2 2.1E-10 4.5E-15 95.6 9.5 140 8-182 297-452 (659)
85 PF13738 Pyr_redox_3: Pyridine 99.0 5.6E-10 1.2E-14 85.2 5.4 75 10-104 126-201 (203)
86 COG2072 TrkA Predicted flavopr 98.9 3.1E-09 6.6E-14 91.1 7.7 77 10-105 132-210 (443)
87 KOG2495|consensus 98.8 1.1E-08 2.4E-13 85.5 8.2 148 8-180 156-330 (491)
88 TIGR01292 TRX_reduct thioredox 98.8 2E-07 4.2E-12 75.0 12.4 93 71-181 2-114 (300)
89 COG3486 IucD Lysine/ornithine 98.7 2.1E-07 4.5E-12 77.7 11.7 143 10-181 145-342 (436)
90 KOG1399|consensus 98.7 4.6E-08 9.9E-13 83.7 7.4 77 7-101 138-217 (448)
91 PRK09564 coenzyme A disulfide 98.7 2.5E-07 5.4E-12 79.1 10.8 98 71-181 2-117 (444)
92 PRK13512 coenzyme A disulfide 98.5 1.2E-06 2.7E-11 75.0 12.1 99 70-182 2-120 (438)
93 PF07992 Pyr_redox_2: Pyridine 98.5 3.3E-07 7.1E-12 69.6 6.2 100 71-181 1-124 (201)
94 PF01494 FAD_binding_3: FAD bi 98.5 2.6E-06 5.6E-11 69.6 11.6 33 71-104 3-35 (356)
95 PF03486 HI0933_like: HI0933-l 98.4 1.2E-06 2.6E-11 74.4 9.0 93 71-179 2-166 (409)
96 PRK09754 phenylpropionate diox 98.4 2.3E-06 5.1E-11 72.2 10.7 94 70-181 4-114 (396)
97 TIGR03140 AhpF alkyl hydropero 98.4 5.1E-06 1.1E-10 72.6 12.5 95 70-181 213-325 (515)
98 COG2081 Predicted flavoprotein 98.4 4.9E-06 1.1E-10 69.5 11.0 31 71-102 5-35 (408)
99 PRK12770 putative glutamate sy 98.4 1.8E-06 3.8E-11 71.9 8.2 98 66-178 15-129 (352)
100 PLN02172 flavin-containing mon 98.3 1.4E-05 3.1E-10 69.0 13.5 34 69-103 10-43 (461)
101 PRK15317 alkyl hydroperoxide r 98.3 1.2E-05 2.5E-10 70.4 12.4 95 70-181 212-324 (517)
102 PF01134 GIDA: Glucose inhibit 98.3 7.9E-06 1.7E-10 68.8 10.7 30 71-101 1-30 (392)
103 PRK04965 NADH:flavorubredoxin 98.3 9.1E-06 2E-10 68.1 10.9 94 70-182 3-114 (377)
104 PRK10262 thioredoxin reductase 98.3 9.5E-06 2.1E-10 66.5 10.6 31 70-101 7-37 (321)
105 TIGR02032 GG-red-SF geranylger 98.3 2E-05 4.3E-10 63.0 12.2 31 72-103 3-33 (295)
106 PRK04176 ribulose-1,5-biphosph 98.2 2.5E-05 5.3E-10 62.5 11.9 105 70-179 26-173 (257)
107 PRK07364 2-octaprenyl-6-methox 98.2 2.5E-05 5.3E-10 66.0 12.4 34 70-104 19-52 (415)
108 TIGR00292 thiazole biosynthesi 98.2 2.1E-05 4.5E-10 62.9 11.2 104 71-179 23-170 (254)
109 PRK06847 hypothetical protein; 98.2 2.1E-05 4.6E-10 65.5 11.8 33 70-103 5-37 (375)
110 PF01266 DAO: FAD dependent ox 98.2 1.7E-05 3.6E-10 64.9 10.8 31 71-102 1-31 (358)
111 TIGR03169 Nterm_to_SelD pyridi 98.2 7.7E-06 1.7E-10 68.1 8.8 91 71-181 1-109 (364)
112 PRK07236 hypothetical protein; 98.2 2.8E-05 6.2E-10 65.3 12.1 34 70-104 7-40 (386)
113 PRK08244 hypothetical protein; 98.2 2.2E-05 4.7E-10 68.2 11.7 32 71-103 4-35 (493)
114 PRK07845 flavoprotein disulfid 98.2 2.4E-05 5.1E-10 67.6 11.7 33 70-103 2-34 (466)
115 PRK12779 putative bifunctional 98.2 7.2E-06 1.6E-10 76.3 9.0 88 68-180 305-406 (944)
116 PRK06481 fumarate reductase fl 98.2 2.6E-05 5.7E-10 68.1 12.0 32 71-103 63-94 (506)
117 PRK11101 glpA sn-glycerol-3-ph 98.2 3.6E-05 7.7E-10 67.9 12.8 31 71-102 8-38 (546)
118 PF13738 Pyr_redox_3: Pyridine 98.2 1.3E-05 2.9E-10 60.9 8.8 93 73-181 1-142 (203)
119 PTZ00318 NADH dehydrogenase-li 98.2 1.1E-05 2.4E-10 68.8 9.2 102 70-181 11-127 (424)
120 PRK06184 hypothetical protein; 98.2 3.1E-05 6.7E-10 67.4 12.1 32 71-103 5-36 (502)
121 PRK01438 murD UDP-N-acetylmura 98.2 8.2E-06 1.8E-10 70.6 8.3 78 69-182 16-93 (480)
122 PRK09853 putative selenate red 98.1 1.1E-05 2.3E-10 75.1 9.0 85 68-179 538-635 (1019)
123 PRK12831 putative oxidoreducta 98.1 9E-06 2E-10 70.2 8.2 89 68-180 139-242 (464)
124 PRK07251 pyridine nucleotide-d 98.1 6.1E-06 1.3E-10 70.6 6.9 32 71-103 5-36 (438)
125 TIGR02374 nitri_red_nirB nitri 98.1 1.7E-05 3.8E-10 72.6 10.0 93 72-182 1-111 (785)
126 PRK06185 hypothetical protein; 98.1 5E-05 1.1E-09 64.0 12.0 33 70-103 7-39 (407)
127 PRK06834 hypothetical protein; 98.1 4.4E-05 9.5E-10 66.4 11.6 32 71-103 5-36 (488)
128 PRK14989 nitrite reductase sub 98.1 2.7E-05 5.9E-10 71.8 10.7 95 70-182 4-116 (847)
129 PRK11749 dihydropyrimidine deh 98.1 6.7E-06 1.4E-10 70.8 6.3 86 67-178 138-236 (457)
130 PRK08773 2-octaprenyl-3-methyl 98.1 4.9E-05 1.1E-09 63.9 11.1 32 71-103 8-39 (392)
131 COG1252 Ndh NADH dehydrogenase 98.1 2.4E-05 5.3E-10 66.1 9.0 35 70-105 4-40 (405)
132 TIGR01317 GOGAT_sm_gam glutama 98.1 8E-06 1.7E-10 70.9 6.2 85 68-178 142-239 (485)
133 PRK08274 tricarballylate dehyd 98.1 9.1E-05 2E-09 63.8 12.6 32 71-103 6-37 (466)
134 PRK08243 4-hydroxybenzoate 3-m 98.0 8.7E-05 1.9E-09 62.5 11.9 34 70-104 3-36 (392)
135 TIGR01318 gltD_gamma_fam gluta 98.0 1.7E-05 3.6E-10 68.6 7.5 87 68-180 140-239 (467)
136 TIGR01316 gltA glutamate synth 98.0 2.2E-05 4.9E-10 67.5 8.2 62 68-130 132-206 (449)
137 PRK05249 soluble pyridine nucl 98.0 0.00011 2.4E-09 63.2 12.4 31 71-102 7-37 (461)
138 PF00890 FAD_binding_2: FAD bi 98.0 7.2E-05 1.6E-09 63.3 11.1 51 119-179 153-203 (417)
139 PRK10015 oxidoreductase; Provi 98.0 8.4E-05 1.8E-09 63.6 11.4 32 71-103 7-38 (429)
140 PF12831 FAD_oxidored: FAD dep 98.0 4.6E-06 1E-10 71.3 3.7 93 72-177 2-148 (428)
141 PRK06126 hypothetical protein; 98.0 0.0001 2.2E-09 64.8 12.0 33 70-103 8-40 (545)
142 PRK10157 putative oxidoreducta 98.0 8.1E-05 1.8E-09 63.7 11.0 32 71-103 7-38 (428)
143 COG1635 THI4 Ribulose 1,5-bisp 98.0 9E-05 2E-09 57.6 9.9 105 70-179 31-178 (262)
144 PLN02463 lycopene beta cyclase 98.0 0.00011 2.3E-09 63.4 11.5 33 71-104 30-62 (447)
145 PRK06183 mhpA 3-(3-hydroxyphen 98.0 9.7E-05 2.1E-09 64.9 11.4 33 70-103 11-43 (538)
146 PRK05976 dihydrolipoamide dehy 98.0 0.00014 3E-09 62.9 11.8 31 71-102 6-36 (472)
147 PRK12775 putative trifunctiona 98.0 3.8E-05 8.2E-10 72.1 8.9 61 69-130 430-503 (1006)
148 PRK08163 salicylate hydroxylas 98.0 0.00014 3E-09 61.1 11.6 34 70-104 5-38 (396)
149 COG1148 HdrA Heterodisulfide r 98.0 0.0001 2.3E-09 63.1 10.6 68 68-136 123-207 (622)
150 PRK05329 anaerobic glycerol-3- 97.9 6.4E-05 1.4E-09 64.2 9.5 95 72-181 218-320 (422)
151 PRK06467 dihydrolipoamide dehy 97.9 0.00014 3.1E-09 62.9 11.8 32 71-103 6-37 (471)
152 PRK12810 gltD glutamate syntha 97.9 1.7E-05 3.7E-10 68.6 6.1 62 68-130 142-216 (471)
153 PRK07333 2-octaprenyl-6-methox 97.9 0.00014 3E-09 61.2 11.3 32 71-103 3-36 (403)
154 PRK07588 hypothetical protein; 97.9 0.00013 2.9E-09 61.3 11.0 33 71-104 2-34 (391)
155 PRK08010 pyridine nucleotide-d 97.9 6.5E-05 1.4E-09 64.3 9.0 32 71-103 5-36 (441)
156 COG0644 FixC Dehydrogenases (f 97.9 0.00022 4.7E-09 60.3 11.9 33 71-104 5-37 (396)
157 TIGR03315 Se_ygfK putative sel 97.9 5.9E-05 1.3E-09 70.4 9.1 59 69-128 537-608 (1012)
158 TIGR03143 AhpF_homolog putativ 97.9 8.6E-05 1.9E-09 65.6 9.6 92 71-181 6-116 (555)
159 PRK05868 hypothetical protein; 97.9 0.00015 3.2E-09 60.9 10.7 34 70-104 2-35 (372)
160 PRK12778 putative bifunctional 97.9 3.3E-05 7.2E-10 70.5 7.1 88 68-180 430-531 (752)
161 PRK05192 tRNA uridine 5-carbox 97.9 0.00015 3.3E-09 64.4 10.8 30 72-102 7-36 (618)
162 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 4.1E-05 8.8E-10 65.4 7.1 33 71-104 2-34 (433)
163 PRK06452 sdhA succinate dehydr 97.9 0.00029 6.4E-09 62.4 12.7 31 71-102 7-37 (566)
164 PRK06475 salicylate hydroxylas 97.9 0.00024 5.1E-09 60.0 11.6 33 70-103 3-35 (400)
165 PRK12809 putative oxidoreducta 97.9 2.7E-05 5.8E-10 69.9 6.1 62 68-130 309-383 (639)
166 TIGR01812 sdhA_frdA_Gneg succi 97.9 0.00031 6.6E-09 62.2 12.7 30 72-102 2-31 (566)
167 PRK08132 FAD-dependent oxidore 97.9 0.00019 4.1E-09 63.2 11.3 33 70-103 24-56 (547)
168 TIGR01813 flavo_cyto_c flavocy 97.9 0.00032 6.9E-09 60.0 12.3 30 72-102 2-32 (439)
169 PRK09126 hypothetical protein; 97.9 0.00021 4.6E-09 59.9 11.1 33 71-104 5-37 (392)
170 COG0654 UbiH 2-polyprenyl-6-me 97.9 0.00019 4E-09 60.5 10.7 31 71-102 4-34 (387)
171 PRK11445 putative oxidoreducta 97.9 0.00028 6E-09 58.7 11.6 31 71-103 3-33 (351)
172 PRK07573 sdhA succinate dehydr 97.8 0.00034 7.4E-09 62.8 12.6 30 71-101 37-66 (640)
173 PRK12814 putative NADPH-depend 97.8 4.9E-05 1.1E-09 68.3 7.1 62 68-130 192-266 (652)
174 TIGR02028 ChlP geranylgeranyl 97.8 0.00038 8.2E-09 59.0 11.9 32 71-103 2-33 (398)
175 PF01946 Thi4: Thi4 family; PD 97.8 0.00029 6.4E-09 54.7 10.1 105 71-180 19-166 (230)
176 TIGR01424 gluta_reduc_2 glutat 97.8 0.00016 3.4E-09 62.1 9.6 30 72-102 5-34 (446)
177 PLN02852 ferredoxin-NADP+ redu 97.8 9.3E-05 2E-09 64.4 8.0 36 68-104 25-62 (491)
178 PRK06416 dihydrolipoamide dehy 97.8 0.00027 6E-09 60.8 10.9 32 71-103 6-37 (462)
179 TIGR02023 BchP-ChlP geranylger 97.8 0.00037 8E-09 58.7 11.4 31 71-102 2-32 (388)
180 PRK14694 putative mercuric red 97.8 0.00038 8.2E-09 60.2 11.7 31 71-102 8-38 (468)
181 PRK12769 putative oxidoreducta 97.8 3.3E-05 7.2E-10 69.4 5.2 62 68-130 326-400 (654)
182 PRK07190 hypothetical protein; 97.8 0.00036 7.9E-09 60.7 11.4 33 71-104 7-39 (487)
183 PRK06753 hypothetical protein; 97.8 0.00037 8E-09 58.1 11.1 33 71-104 2-34 (373)
184 COG0578 GlpA Glycerol-3-phosph 97.8 0.00037 8.1E-09 60.9 11.1 32 71-103 14-45 (532)
185 PLN02985 squalene monooxygenas 97.8 0.0006 1.3E-08 59.8 12.5 32 71-103 45-76 (514)
186 PRK07818 dihydrolipoamide dehy 97.7 0.00024 5.1E-09 61.4 9.8 31 71-102 6-36 (466)
187 PRK06115 dihydrolipoamide dehy 97.7 0.00044 9.5E-09 59.8 11.4 31 71-102 5-35 (466)
188 PRK12771 putative glutamate sy 97.7 5.3E-05 1.2E-09 67.0 5.8 63 67-130 135-210 (564)
189 PRK05714 2-octaprenyl-3-methyl 97.7 0.00043 9.4E-09 58.4 10.7 32 71-103 4-35 (405)
190 TIGR01372 soxA sarcosine oxida 97.7 0.00071 1.5E-08 63.7 13.0 107 70-181 164-288 (985)
191 TIGR01984 UbiH 2-polyprenyl-6- 97.7 0.00047 1E-08 57.6 10.7 32 72-104 2-34 (382)
192 TIGR01988 Ubi-OHases Ubiquinon 97.7 0.00053 1.2E-08 57.1 10.8 32 72-104 2-33 (385)
193 PRK07045 putative monooxygenas 97.7 0.00085 1.8E-08 56.3 12.1 33 71-104 7-39 (388)
194 PRK08626 fumarate reductase fl 97.7 0.00069 1.5E-08 61.1 12.1 31 71-102 7-37 (657)
195 COG0492 TrxB Thioredoxin reduc 97.7 0.00068 1.5E-08 55.6 11.0 31 71-101 5-35 (305)
196 PRK08020 ubiF 2-octaprenyl-3-m 97.7 0.00056 1.2E-08 57.4 10.8 32 71-103 7-38 (391)
197 PRK06116 glutathione reductase 97.7 0.00032 6.9E-09 60.2 9.5 31 71-102 6-36 (450)
198 PRK06854 adenylylsulfate reduc 97.7 0.00092 2E-08 59.8 12.6 31 71-102 13-45 (608)
199 COG0579 Predicted dehydrogenas 97.7 0.00074 1.6E-08 57.7 11.3 32 71-103 5-38 (429)
200 PRK07121 hypothetical protein; 97.6 0.00061 1.3E-08 59.2 10.9 32 71-103 22-53 (492)
201 PRK07608 ubiquinone biosynthes 97.6 0.00068 1.5E-08 56.7 10.8 33 71-104 7-39 (388)
202 PRK06370 mercuric reductase; V 97.6 0.00047 1E-08 59.4 10.1 31 71-102 7-37 (463)
203 PF00743 FMO-like: Flavin-bind 97.6 0.00042 9.2E-09 60.9 9.9 33 70-103 2-34 (531)
204 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 0.00095 2.1E-08 56.3 11.7 34 70-104 3-36 (390)
205 PRK06912 acoL dihydrolipoamide 97.6 0.00019 4.1E-09 61.9 7.4 32 71-103 2-33 (458)
206 PRK13748 putative mercuric red 97.6 0.00089 1.9E-08 59.0 11.8 31 71-102 100-130 (561)
207 PRK06175 L-aspartate oxidase; 97.6 0.00092 2E-08 57.3 11.4 30 71-102 6-35 (433)
208 PRK13984 putative oxidoreducta 97.6 0.00017 3.7E-09 64.3 7.1 85 68-178 282-379 (604)
209 PRK06996 hypothetical protein; 97.6 0.00068 1.5E-08 57.3 10.5 34 70-103 12-48 (398)
210 TIGR01421 gluta_reduc_1 glutat 97.6 0.00055 1.2E-08 58.9 10.1 31 71-102 4-34 (450)
211 PRK08849 2-octaprenyl-3-methyl 97.6 0.00084 1.8E-08 56.4 10.8 32 71-103 5-36 (384)
212 PRK06617 2-octaprenyl-6-methox 97.6 0.0008 1.7E-08 56.4 10.6 31 71-102 3-33 (374)
213 TIGR01811 sdhA_Bsu succinate d 97.6 0.0013 2.8E-08 58.8 12.4 31 72-103 1-31 (603)
214 PRK05945 sdhA succinate dehydr 97.6 0.0011 2.4E-08 58.9 12.0 31 71-102 5-37 (575)
215 PRK08013 oxidoreductase; Provi 97.6 0.00091 2E-08 56.5 11.0 33 71-104 5-37 (400)
216 PRK07803 sdhA succinate dehydr 97.6 0.0012 2.6E-08 59.3 12.1 31 71-102 10-40 (626)
217 PRK14727 putative mercuric red 97.6 0.0015 3.2E-08 56.7 12.2 32 70-102 17-48 (479)
218 PLN02661 Putative thiazole syn 97.6 0.0016 3.5E-08 54.3 11.6 104 71-179 94-244 (357)
219 PLN02464 glycerol-3-phosphate 97.6 0.0017 3.8E-08 58.2 12.7 31 71-102 73-103 (627)
220 TIGR01790 carotene-cycl lycope 97.6 0.0013 2.7E-08 55.2 11.3 31 72-103 2-32 (388)
221 TIGR02053 MerA mercuric reduct 97.5 0.00042 9.1E-09 59.7 8.5 30 72-102 3-32 (463)
222 PRK06069 sdhA succinate dehydr 97.5 0.0014 3.1E-08 58.2 12.0 31 71-102 7-40 (577)
223 PRK08850 2-octaprenyl-6-methox 97.5 0.0011 2.3E-08 56.1 10.7 31 71-102 6-36 (405)
224 PLN00093 geranylgeranyl diphos 97.5 0.0015 3.2E-08 56.4 11.6 32 71-103 41-72 (450)
225 PTZ00139 Succinate dehydrogena 97.5 0.0017 3.8E-08 58.1 12.4 31 71-102 31-61 (617)
226 PRK09078 sdhA succinate dehydr 97.5 0.0018 3.8E-08 57.8 12.2 31 71-102 14-44 (598)
227 TIGR00551 nadB L-aspartate oxi 97.5 0.0019 4.1E-08 56.2 12.0 30 71-102 4-33 (488)
228 PRK07538 hypothetical protein; 97.5 0.0015 3.3E-08 55.4 11.2 32 71-103 2-33 (413)
229 PRK06263 sdhA succinate dehydr 97.5 0.0018 3.8E-08 57.1 11.9 30 71-102 9-38 (543)
230 PRK08275 putative oxidoreducta 97.5 0.0026 5.7E-08 56.2 13.0 32 71-103 11-44 (554)
231 PRK13369 glycerol-3-phosphate 97.5 0.0025 5.3E-08 55.7 12.6 32 71-103 8-39 (502)
232 TIGR00275 flavoprotein, HI0933 97.5 0.00094 2E-08 56.7 9.6 30 73-103 1-30 (400)
233 PRK06567 putative bifunctional 97.5 0.00036 7.8E-09 64.8 7.3 35 67-102 381-415 (1028)
234 KOG1399|consensus 97.5 0.0016 3.6E-08 56.0 10.8 35 68-103 5-39 (448)
235 PLN02507 glutathione reductase 97.5 0.00062 1.3E-08 59.4 8.3 30 71-101 27-56 (499)
236 PLN02697 lycopene epsilon cycl 97.4 0.0021 4.5E-08 56.6 11.5 31 71-102 110-140 (529)
237 PRK08958 sdhA succinate dehydr 97.4 0.0029 6.3E-08 56.4 12.6 31 71-102 9-39 (588)
238 COG1148 HdrA Heterodisulfide r 97.4 0.0031 6.8E-08 54.3 11.8 152 9-180 299-477 (622)
239 PRK09897 hypothetical protein; 97.4 0.0026 5.7E-08 56.0 11.8 34 70-103 2-36 (534)
240 TIGR01350 lipoamide_DH dihydro 97.4 0.0012 2.6E-08 56.7 9.6 30 71-101 3-32 (461)
241 PRK07494 2-octaprenyl-6-methox 97.4 0.0024 5.1E-08 53.5 11.1 32 71-103 9-40 (388)
242 TIGR00136 gidA glucose-inhibit 97.4 0.0023 4.9E-08 57.0 11.3 30 72-102 3-32 (617)
243 PRK08401 L-aspartate oxidase; 97.4 0.0021 4.5E-08 55.7 11.0 31 71-102 3-33 (466)
244 PRK05732 2-octaprenyl-6-methox 97.4 0.0024 5.3E-08 53.5 10.9 31 71-102 5-38 (395)
245 PLN00128 Succinate dehydrogena 97.4 0.0035 7.6E-08 56.4 12.3 31 71-102 52-82 (635)
246 COG2072 TrkA Predicted flavopr 97.4 0.0038 8.2E-08 53.8 12.0 34 70-103 9-42 (443)
247 TIGR01438 TGR thioredoxin and 97.4 0.0026 5.7E-08 55.3 11.1 30 71-101 4-33 (484)
248 PRK07057 sdhA succinate dehydr 97.4 0.0044 9.5E-08 55.3 12.6 31 71-102 14-44 (591)
249 PF04820 Trp_halogenase: Trypt 97.4 0.0026 5.6E-08 55.0 10.9 31 71-102 1-34 (454)
250 TIGR01176 fum_red_Fp fumarate 97.3 0.0042 9.2E-08 55.3 12.4 31 71-102 5-37 (580)
251 PRK07804 L-aspartate oxidase; 97.3 0.0041 8.9E-08 54.9 12.1 32 71-103 18-49 (541)
252 PRK14106 murD UDP-N-acetylmura 97.3 0.00074 1.6E-08 57.9 7.3 33 69-102 5-37 (450)
253 PRK09231 fumarate reductase fl 97.3 0.004 8.7E-08 55.4 12.1 31 71-102 6-38 (582)
254 PRK08071 L-aspartate oxidase; 97.3 0.0033 7.2E-08 55.0 11.4 31 71-103 5-35 (510)
255 PRK12845 3-ketosteroid-delta-1 97.3 0.0044 9.4E-08 55.0 11.8 30 71-102 18-47 (564)
256 PRK07395 L-aspartate oxidase; 97.3 0.0029 6.3E-08 56.0 10.7 31 71-103 11-41 (553)
257 PRK12842 putative succinate de 97.3 0.00044 9.5E-09 61.4 5.5 99 68-180 156-276 (574)
258 KOG1298|consensus 97.3 0.0021 4.6E-08 53.9 8.8 31 71-102 47-77 (509)
259 COG0445 GidA Flavin-dependent 97.2 0.00097 2.1E-08 58.1 6.8 30 71-101 6-35 (621)
260 PF13450 NAD_binding_8: NAD(P) 97.2 0.00062 1.3E-08 43.2 4.2 30 74-104 1-30 (68)
261 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00049 1.1E-08 58.8 4.6 34 70-104 3-36 (436)
262 PRK08641 sdhA succinate dehydr 97.2 0.0075 1.6E-07 53.8 12.2 30 71-101 5-34 (589)
263 PRK12835 3-ketosteroid-delta-1 97.2 0.0068 1.5E-07 54.0 11.6 32 71-103 13-44 (584)
264 PRK06327 dihydrolipoamide dehy 97.1 0.0068 1.5E-07 52.5 11.2 30 71-101 6-35 (475)
265 PTZ00052 thioredoxin reductase 97.1 0.00092 2E-08 58.4 5.8 30 71-101 7-36 (499)
266 PRK08205 sdhA succinate dehydr 97.1 0.0098 2.1E-07 53.0 12.4 30 71-102 7-36 (583)
267 PRK07512 L-aspartate oxidase; 97.1 0.0064 1.4E-07 53.3 10.9 31 70-103 10-40 (513)
268 PLN02815 L-aspartate oxidase 97.1 0.0088 1.9E-07 53.4 11.6 31 71-103 31-61 (594)
269 PLN02546 glutathione reductase 97.1 0.0037 8.1E-08 55.4 9.1 30 71-101 81-110 (558)
270 PRK08294 phenol 2-monooxygenas 97.1 0.0094 2E-07 53.7 11.8 33 71-104 34-67 (634)
271 COG1249 Lpd Pyruvate/2-oxoglut 97.1 0.0053 1.1E-07 53.0 9.7 31 72-103 7-37 (454)
272 PRK06134 putative FAD-binding 97.1 0.02 4.2E-07 51.1 13.5 32 70-102 13-44 (581)
273 PRK07843 3-ketosteroid-delta-1 97.0 0.0011 2.3E-08 58.7 5.5 97 68-177 159-267 (557)
274 TIGR01423 trypano_reduc trypan 97.0 0.0086 1.9E-07 52.2 10.7 29 72-101 6-35 (486)
275 PF05834 Lycopene_cycl: Lycope 97.0 0.0089 1.9E-07 50.2 10.5 32 72-104 2-35 (374)
276 TIGR02061 aprA adenosine phosp 97.0 0.017 3.6E-07 51.9 12.5 30 72-102 2-35 (614)
277 TIGR02485 CobZ_N-term precorri 97.0 0.0084 1.8E-07 51.3 10.3 29 74-103 1-29 (432)
278 KOG0029|consensus 97.0 0.00099 2.1E-08 58.2 4.7 34 70-104 16-49 (501)
279 PRK13800 putative oxidoreducta 97.0 0.014 3.1E-07 54.6 12.4 31 71-102 15-45 (897)
280 PRK12409 D-amino acid dehydrog 97.0 0.0011 2.4E-08 56.0 4.7 32 71-103 3-34 (410)
281 KOG1336|consensus 96.9 0.007 1.5E-07 51.9 9.1 93 70-182 75-184 (478)
282 KOG2404|consensus 96.9 0.0073 1.6E-07 49.8 8.8 47 122-179 160-206 (477)
283 PTZ00306 NADH-dependent fumara 96.9 0.017 3.8E-07 55.4 12.5 31 71-102 411-441 (1167)
284 PRK09077 L-aspartate oxidase; 96.9 0.019 4.2E-07 50.6 11.8 31 71-103 10-40 (536)
285 KOG0399|consensus 96.8 0.0048 1E-07 58.1 7.8 62 68-130 1784-1858(2142)
286 PRK07233 hypothetical protein; 96.8 0.0017 3.8E-08 54.9 4.6 33 71-104 1-33 (434)
287 TIGR01470 cysG_Nterm siroheme 96.8 0.0045 9.7E-08 47.9 6.2 32 69-101 9-40 (205)
288 PRK11883 protoporphyrinogen ox 96.8 0.002 4.3E-08 54.9 4.6 34 70-104 1-36 (451)
289 COG0493 GltD NADPH-dependent g 96.8 0.0047 1E-07 53.4 6.9 62 68-130 122-196 (457)
290 TIGR01377 soxA_mon sarcosine o 96.7 0.0022 4.7E-08 53.5 4.6 32 71-103 2-33 (380)
291 PRK11259 solA N-methyltryptoph 96.7 0.0024 5.2E-08 53.1 4.6 32 71-103 5-36 (376)
292 PF13241 NAD_binding_7: Putati 96.7 0.0016 3.4E-08 44.7 2.8 33 69-102 7-39 (103)
293 COG0029 NadB Aspartate oxidase 96.6 0.015 3.4E-07 50.2 9.0 32 71-104 9-40 (518)
294 PF01488 Shikimate_DH: Shikima 96.6 0.0046 1E-07 44.5 5.1 34 69-102 12-45 (135)
295 PRK00711 D-amino acid dehydrog 96.5 0.0033 7.2E-08 53.1 4.6 31 71-102 2-32 (416)
296 PTZ00188 adrenodoxin reductase 96.5 0.0054 1.2E-07 53.4 5.8 36 68-104 38-74 (506)
297 KOG2852|consensus 96.5 0.0076 1.7E-07 48.9 6.2 33 70-102 11-48 (380)
298 PLN02268 probable polyamine ox 96.5 0.0039 8.5E-08 53.1 4.7 33 71-104 2-34 (435)
299 TIGR03364 HpnW_proposed FAD de 96.5 0.0039 8.6E-08 51.8 4.5 31 71-102 2-32 (365)
300 TIGR01789 lycopene_cycl lycope 96.5 0.02 4.4E-07 48.1 8.7 31 72-103 2-34 (370)
301 COG0665 DadA Glycine/D-amino a 96.5 0.005 1.1E-07 51.3 5.0 33 70-103 5-37 (387)
302 PRK06719 precorrin-2 dehydroge 96.4 0.0057 1.2E-07 45.3 4.6 31 69-100 13-43 (157)
303 KOG2311|consensus 96.4 0.016 3.5E-07 50.1 7.7 30 71-101 30-59 (679)
304 PRK11728 hydroxyglutarate oxid 96.4 0.0044 9.5E-08 52.2 4.4 32 71-103 4-37 (393)
305 PRK07208 hypothetical protein; 96.4 0.0052 1.1E-07 53.0 4.7 34 70-104 5-38 (479)
306 PRK05562 precorrin-2 dehydroge 96.3 0.012 2.7E-07 46.0 6.2 31 70-101 26-56 (223)
307 PRK12266 glpD glycerol-3-phosp 96.3 0.0051 1.1E-07 53.8 4.5 32 71-103 8-39 (508)
308 PRK06718 precorrin-2 dehydroge 96.3 0.0063 1.4E-07 46.9 4.5 32 69-101 10-41 (202)
309 COG1233 Phytoene dehydrogenase 96.3 0.0057 1.2E-07 53.3 4.7 33 71-104 5-37 (487)
310 COG0562 Glf UDP-galactopyranos 96.2 0.0081 1.8E-07 49.4 4.7 34 71-105 3-36 (374)
311 TIGR00562 proto_IX_ox protopor 96.2 0.0072 1.6E-07 51.8 4.6 34 70-104 3-40 (462)
312 TIGR02733 desat_CrtD C-3',4' d 96.2 0.0076 1.7E-07 52.3 4.8 34 70-104 2-35 (492)
313 TIGR03219 salicylate_mono sali 96.2 0.0071 1.5E-07 51.3 4.4 34 71-104 2-35 (414)
314 TIGR03329 Phn_aa_oxid putative 96.2 0.0067 1.5E-07 52.3 4.3 31 71-102 26-58 (460)
315 PLN02576 protoporphyrinogen ox 96.1 0.011 2.4E-07 51.2 5.6 34 70-104 13-47 (496)
316 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.0067 1.4E-07 44.8 3.6 31 71-102 1-31 (157)
317 TIGR02734 crtI_fam phytoene de 96.1 0.0061 1.3E-07 53.0 3.9 32 72-104 1-32 (502)
318 PF07992 Pyr_redox_2: Pyridine 96.1 0.0026 5.7E-08 48.0 1.5 49 7-76 107-159 (201)
319 TIGR02731 phytoene_desat phyto 96.1 0.0077 1.7E-07 51.7 4.4 33 71-104 1-33 (453)
320 TIGR01373 soxB sarcosine oxida 96.1 0.012 2.7E-07 49.6 5.6 32 71-102 32-64 (407)
321 PRK12416 protoporphyrinogen ox 96.1 0.0079 1.7E-07 51.7 4.5 34 70-104 2-41 (463)
322 PF00899 ThiF: ThiF family; I 96.1 0.013 2.8E-07 42.0 4.9 33 70-102 3-35 (135)
323 PRK01747 mnmC bifunctional tRN 96.1 0.0071 1.5E-07 54.6 4.3 32 71-103 262-293 (662)
324 KOG0042|consensus 96.1 0.0097 2.1E-07 52.0 4.7 32 71-103 69-100 (680)
325 COG3349 Uncharacterized conser 96.0 0.0088 1.9E-07 51.8 4.4 34 70-104 1-34 (485)
326 PF06039 Mqo: Malate:quinone o 96.0 0.13 2.8E-06 44.5 11.3 31 72-102 6-37 (488)
327 PRK07846 mycothione reductase; 96.0 0.071 1.5E-06 46.0 10.0 28 72-102 4-31 (451)
328 KOG2495|consensus 96.0 0.045 9.7E-07 46.7 8.1 101 70-182 56-173 (491)
329 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.011 2.3E-07 44.8 4.1 32 71-103 1-32 (180)
330 COG1648 CysG Siroheme synthase 95.9 0.024 5.2E-07 44.0 6.1 32 69-101 12-43 (210)
331 COG1893 ApbA Ketopantoate redu 95.9 0.025 5.3E-07 46.5 6.4 49 71-129 2-50 (307)
332 TIGR00031 UDP-GALP_mutase UDP- 95.9 0.012 2.7E-07 49.6 4.6 33 71-104 3-35 (377)
333 KOG2415|consensus 95.9 0.067 1.5E-06 45.7 8.7 63 116-178 192-255 (621)
334 PRK02472 murD UDP-N-acetylmura 95.8 0.04 8.7E-07 47.2 7.6 54 69-127 5-58 (447)
335 COG0686 Ald Alanine dehydrogen 95.8 0.0099 2.1E-07 48.7 3.5 34 68-102 167-200 (371)
336 PLN02927 antheraxanthin epoxid 95.8 0.013 2.9E-07 52.9 4.7 33 70-103 82-114 (668)
337 TIGR01989 COQ6 Ubiquinone bios 95.8 0.011 2.4E-07 50.7 4.0 31 72-103 3-37 (437)
338 COG3573 Predicted oxidoreducta 95.8 0.11 2.3E-06 43.4 9.4 33 70-103 6-38 (552)
339 PF13434 K_oxygenase: L-lysine 95.7 0.081 1.8E-06 44.1 8.7 33 72-104 5-37 (341)
340 COG1053 SdhA Succinate dehydro 95.7 0.11 2.3E-06 46.3 9.8 30 71-101 8-37 (562)
341 TIGR01320 mal_quin_oxido malat 95.7 0.015 3.2E-07 50.7 4.4 30 72-102 3-34 (483)
342 PRK02705 murD UDP-N-acetylmura 95.6 0.04 8.7E-07 47.4 6.9 54 71-128 2-55 (459)
343 TIGR02732 zeta_caro_desat caro 95.6 0.018 3.9E-07 50.0 4.6 33 71-104 1-33 (474)
344 PRK15116 sulfur acceptor prote 95.5 0.023 5E-07 45.8 4.7 34 70-103 31-64 (268)
345 PRK01710 murD UDP-N-acetylmura 95.5 0.069 1.5E-06 46.1 7.9 55 69-127 14-68 (458)
346 PRK04308 murD UDP-N-acetylmura 95.5 0.061 1.3E-06 46.2 7.5 33 69-102 5-37 (445)
347 PLN02676 polyamine oxidase 95.5 0.018 3.9E-07 50.2 4.3 35 70-104 27-61 (487)
348 TIGR02354 thiF_fam2 thiamine b 95.4 0.025 5.4E-07 43.6 4.4 33 70-102 22-54 (200)
349 PTZ00367 squalene epoxidase; P 95.4 0.021 4.5E-07 50.8 4.4 32 71-103 35-66 (567)
350 KOG0685|consensus 95.4 0.027 5.8E-07 48.5 4.8 35 70-104 22-56 (498)
351 TIGR03452 mycothione_red mycot 95.4 0.074 1.6E-06 45.9 7.6 29 71-102 4-32 (452)
352 PLN02529 lysine-specific histo 95.4 0.027 5.8E-07 51.5 5.1 34 70-104 161-194 (738)
353 KOG2614|consensus 95.4 0.026 5.6E-07 47.8 4.6 33 70-103 3-35 (420)
354 PRK00421 murC UDP-N-acetylmura 95.4 0.045 9.7E-07 47.3 6.3 49 70-126 8-57 (461)
355 PF02558 ApbA: Ketopantoate re 95.4 0.029 6.4E-07 40.6 4.4 47 72-128 1-47 (151)
356 TIGR02730 carot_isom carotene 95.4 0.024 5.2E-07 49.3 4.6 32 72-104 3-34 (493)
357 COG1232 HemY Protoporphyrinoge 95.3 0.025 5.3E-07 48.8 4.5 33 71-104 2-36 (444)
358 PTZ00383 malate:quinone oxidor 95.3 0.024 5.2E-07 49.6 4.5 33 71-103 47-80 (497)
359 COG0771 MurD UDP-N-acetylmuram 95.2 0.076 1.7E-06 45.8 7.0 54 69-127 7-60 (448)
360 cd01483 E1_enzyme_family Super 95.2 0.034 7.4E-07 40.1 4.3 32 71-102 1-32 (143)
361 cd01487 E1_ThiF_like E1_ThiF_l 95.2 0.035 7.7E-07 41.7 4.5 33 71-103 1-33 (174)
362 KOG2844|consensus 95.2 0.12 2.7E-06 46.5 8.3 32 70-101 40-71 (856)
363 PLN02612 phytoene desaturase 95.1 0.037 8E-07 49.2 5.1 36 68-104 92-127 (567)
364 PRK13977 myosin-cross-reactive 95.1 0.17 3.6E-06 45.1 9.0 58 114-180 233-294 (576)
365 PRK05257 malate:quinone oxidor 95.1 0.029 6.3E-07 49.0 4.3 32 71-103 7-40 (494)
366 PLN02328 lysine-specific histo 95.1 0.04 8.7E-07 50.8 5.2 34 70-104 239-272 (808)
367 PRK09897 hypothetical protein; 95.0 0.095 2.1E-06 46.3 7.4 23 69-91 191-213 (534)
368 PF01262 AlaDh_PNT_C: Alanine 95.0 0.047 1E-06 40.6 4.7 34 68-102 19-52 (168)
369 COG1004 Ugd Predicted UDP-gluc 95.0 0.023 4.9E-07 48.0 3.2 30 71-101 2-31 (414)
370 cd01080 NAD_bind_m-THF_DH_Cycl 95.0 0.047 1E-06 40.9 4.6 34 68-102 43-77 (168)
371 PLN02487 zeta-carotene desatur 94.9 0.04 8.7E-07 49.0 4.8 33 71-104 77-109 (569)
372 COG0446 HcaD Uncharacterized N 94.9 0.24 5.2E-06 41.2 9.2 92 72-182 1-109 (415)
373 TIGR02356 adenyl_thiF thiazole 94.9 0.045 9.7E-07 42.1 4.4 33 70-102 22-54 (202)
374 PRK06292 dihydrolipoamide dehy 94.8 0.04 8.7E-07 47.4 4.4 31 71-102 5-35 (460)
375 PLN02568 polyamine oxidase 94.8 0.044 9.5E-07 48.5 4.7 35 70-104 6-44 (539)
376 cd01485 E1-1_like Ubiquitin ac 94.8 0.056 1.2E-06 41.5 4.7 33 70-102 20-52 (198)
377 PRK14175 bifunctional 5,10-met 94.8 0.099 2.2E-06 42.5 6.3 35 68-103 157-192 (286)
378 PRK10637 cysG siroheme synthas 94.8 0.084 1.8E-06 45.7 6.2 31 69-100 12-42 (457)
379 PRK12837 3-ketosteroid-delta-1 94.8 0.039 8.5E-07 48.4 4.2 31 71-103 9-39 (513)
380 cd01492 Aos1_SUMO Ubiquitin ac 94.7 0.058 1.3E-06 41.4 4.7 34 70-103 22-55 (197)
381 PRK07819 3-hydroxybutyryl-CoA 94.7 0.048 1E-06 44.3 4.3 34 70-104 6-39 (286)
382 PF00732 GMC_oxred_N: GMC oxid 94.7 0.039 8.5E-07 44.4 3.8 33 72-104 3-35 (296)
383 PRK08293 3-hydroxybutyryl-CoA 94.7 0.054 1.2E-06 43.8 4.6 33 70-103 4-36 (287)
384 PRK03369 murD UDP-N-acetylmura 94.7 0.13 2.9E-06 44.8 7.3 33 68-101 11-43 (488)
385 cd05191 NAD_bind_amino_acid_DH 94.7 0.082 1.8E-06 34.8 4.7 34 68-101 22-55 (86)
386 PRK07066 3-hydroxybutyryl-CoA 94.7 0.051 1.1E-06 44.9 4.4 33 70-103 8-40 (321)
387 cd00757 ThiF_MoeB_HesA_family 94.7 0.057 1.2E-06 42.3 4.6 33 70-102 22-54 (228)
388 PRK04690 murD UDP-N-acetylmura 94.6 0.15 3.2E-06 44.3 7.5 33 69-102 8-40 (468)
389 PRK12475 thiamine/molybdopteri 94.6 0.054 1.2E-06 45.1 4.5 34 70-103 25-58 (338)
390 TIGR03385 CoA_CoA_reduc CoA-di 94.6 0.21 4.6E-06 42.5 8.2 83 84-182 2-106 (427)
391 COG1251 NirB NAD(P)H-nitrite r 94.6 0.28 6.1E-06 44.6 9.0 95 70-182 4-116 (793)
392 cd01484 E1-2_like Ubiquitin ac 94.5 0.061 1.3E-06 42.5 4.5 33 71-103 1-33 (234)
393 PRK13339 malate:quinone oxidor 94.5 0.05 1.1E-06 47.6 4.3 30 71-101 8-39 (497)
394 KOG4716|consensus 94.5 0.086 1.9E-06 44.0 5.3 29 71-100 21-49 (503)
395 TIGR02355 moeB molybdopterin s 94.5 0.067 1.4E-06 42.4 4.7 34 70-103 25-58 (240)
396 KOG2820|consensus 94.5 0.62 1.3E-05 38.9 10.3 30 72-102 10-39 (399)
397 PLN03000 amine oxidase 94.5 0.054 1.2E-06 50.3 4.7 34 70-104 185-218 (881)
398 PRK08644 thiamine biosynthesis 94.5 0.07 1.5E-06 41.4 4.7 33 70-102 29-61 (212)
399 PRK07688 thiamine/molybdopteri 94.5 0.067 1.4E-06 44.6 4.7 33 70-102 25-57 (339)
400 PRK08328 hypothetical protein; 94.4 0.07 1.5E-06 42.0 4.6 33 70-102 28-60 (231)
401 PRK12549 shikimate 5-dehydroge 94.4 0.067 1.4E-06 43.4 4.5 34 69-102 127-160 (284)
402 cd01489 Uba2_SUMO Ubiquitin ac 94.4 0.056 1.2E-06 44.5 4.1 33 71-103 1-33 (312)
403 KOG2013|consensus 94.4 0.058 1.3E-06 46.5 4.2 37 68-104 11-47 (603)
404 PTZ00363 rab-GDP dissociation 94.4 0.047 1E-06 47.1 3.8 32 72-104 7-38 (443)
405 PRK12842 putative succinate de 94.3 0.059 1.3E-06 47.9 4.4 32 71-103 11-42 (574)
406 PRK09260 3-hydroxybutyryl-CoA 94.3 0.069 1.5E-06 43.2 4.4 33 70-103 2-34 (288)
407 PRK06035 3-hydroxyacyl-CoA deh 94.3 0.067 1.5E-06 43.3 4.3 33 70-103 4-36 (291)
408 PRK05708 2-dehydropantoate 2-r 94.3 0.071 1.5E-06 43.6 4.5 31 71-102 4-34 (305)
409 PF02254 TrkA_N: TrkA-N domain 94.3 0.2 4.3E-06 34.4 6.2 47 72-127 1-47 (116)
410 TIGR03378 glycerol3P_GlpB glyc 94.3 0.73 1.6E-05 39.6 10.6 51 115-178 271-321 (419)
411 PRK08255 salicylyl-CoA 5-hydro 94.2 0.067 1.4E-06 49.3 4.7 33 71-104 2-36 (765)
412 PF00670 AdoHcyase_NAD: S-aden 94.2 0.077 1.7E-06 39.5 4.1 36 67-103 21-56 (162)
413 TIGR01809 Shik-DH-AROM shikima 94.2 0.084 1.8E-06 42.8 4.7 34 69-102 125-158 (282)
414 KOG0405|consensus 94.2 0.53 1.2E-05 39.5 9.2 30 72-102 23-52 (478)
415 cd01488 Uba3_RUB Ubiquitin act 94.2 0.071 1.5E-06 43.5 4.2 33 71-103 1-33 (291)
416 COG4529 Uncharacterized protei 94.1 0.073 1.6E-06 45.9 4.4 38 67-104 194-232 (474)
417 PRK05690 molybdopterin biosynt 94.1 0.093 2E-06 41.7 4.7 33 70-102 33-65 (245)
418 PRK06522 2-dehydropantoate 2-r 94.1 0.08 1.7E-06 42.8 4.5 31 71-102 2-32 (304)
419 TIGR02853 spore_dpaA dipicolin 94.1 0.09 2E-06 42.8 4.6 34 69-103 151-184 (287)
420 PTZ00058 glutathione reductase 94.1 0.074 1.6E-06 47.3 4.4 31 71-102 50-80 (561)
421 PRK12834 putative FAD-binding 94.1 0.076 1.6E-06 47.0 4.5 32 71-103 6-37 (549)
422 PRK14192 bifunctional 5,10-met 94.0 0.18 4E-06 40.9 6.3 35 68-103 158-193 (283)
423 cd05311 NAD_bind_2_malic_enz N 94.0 0.096 2.1E-06 41.1 4.6 35 69-103 25-61 (226)
424 PRK06129 3-hydroxyacyl-CoA deh 94.0 0.084 1.8E-06 43.2 4.4 33 70-103 3-35 (308)
425 cd00401 AdoHcyase S-adenosyl-L 94.0 0.098 2.1E-06 44.7 4.9 34 68-102 201-234 (413)
426 COG3380 Predicted NAD/FAD-depe 94.0 0.09 1.9E-06 42.5 4.3 31 71-102 3-33 (331)
427 cd05213 NAD_bind_Glutamyl_tRNA 94.0 0.091 2E-06 43.1 4.5 34 69-102 178-211 (311)
428 PRK00258 aroE shikimate 5-dehy 94.0 0.1 2.2E-06 42.1 4.8 34 69-102 123-156 (278)
429 PF08659 KR: KR domain; Inter 93.9 0.31 6.8E-06 36.5 7.1 54 72-126 3-57 (181)
430 KOG3851|consensus 93.9 0.095 2.1E-06 43.4 4.4 33 71-103 41-74 (446)
431 PRK07530 3-hydroxybutyryl-CoA 93.9 0.098 2.1E-06 42.4 4.6 33 70-103 5-37 (292)
432 PRK13977 myosin-cross-reactive 93.8 0.098 2.1E-06 46.5 4.7 34 70-104 23-60 (576)
433 PF02826 2-Hacid_dh_C: D-isome 93.8 0.13 2.9E-06 38.6 4.9 35 68-103 35-69 (178)
434 cd01486 Apg7 Apg7 is an E1-lik 93.8 0.09 2E-06 43.0 4.2 32 71-102 1-32 (307)
435 PRK06249 2-dehydropantoate 2-r 93.8 0.11 2.4E-06 42.5 4.8 32 70-102 6-37 (313)
436 PRK12548 shikimate 5-dehydroge 93.8 0.12 2.6E-06 42.0 4.9 34 69-102 126-159 (289)
437 TIGR01087 murD UDP-N-acetylmur 93.8 0.27 5.8E-06 42.0 7.2 31 71-102 1-31 (433)
438 TIGR00518 alaDH alanine dehydr 93.7 0.11 2.4E-06 43.8 4.7 33 69-102 167-199 (370)
439 PLN02545 3-hydroxybutyryl-CoA 93.7 0.11 2.4E-06 42.1 4.6 33 70-103 5-37 (295)
440 PRK08306 dipicolinate synthase 93.7 0.12 2.6E-06 42.2 4.8 35 68-103 151-185 (296)
441 cd01065 NAD_bind_Shikimate_DH 93.7 0.14 3E-06 37.1 4.6 34 69-102 19-52 (155)
442 cd00755 YgdL_like Family of ac 93.7 0.11 2.5E-06 40.8 4.5 33 70-102 12-44 (231)
443 PRK08223 hypothetical protein; 93.7 0.12 2.6E-06 42.0 4.6 34 70-103 28-61 (287)
444 TIGR01082 murC UDP-N-acetylmur 93.6 0.19 4.1E-06 43.3 6.1 49 71-127 1-50 (448)
445 PRK07843 3-ketosteroid-delta-1 93.6 0.1 2.2E-06 46.3 4.4 32 71-103 9-40 (557)
446 cd01075 NAD_bind_Leu_Phe_Val_D 93.6 0.13 2.9E-06 39.5 4.5 32 69-101 28-59 (200)
447 PF13460 NAD_binding_10: NADH( 93.5 0.15 3.2E-06 37.8 4.6 32 72-104 1-33 (183)
448 COG3634 AhpF Alkyl hydroperoxi 93.5 0.2 4.3E-06 42.0 5.5 93 71-178 213-324 (520)
449 COG1231 Monoamine oxidase [Ami 93.5 0.15 3.3E-06 43.7 5.1 36 68-104 6-41 (450)
450 KOG0404|consensus 93.4 0.69 1.5E-05 36.6 8.2 30 70-100 9-38 (322)
451 COG0569 TrkA K+ transport syst 93.4 0.13 2.9E-06 40.2 4.4 32 71-103 2-33 (225)
452 PRK09424 pntA NAD(P) transhydr 93.4 0.12 2.7E-06 45.3 4.6 35 68-103 164-198 (509)
453 TIGR01035 hemA glutamyl-tRNA r 93.4 0.13 2.8E-06 44.0 4.7 34 69-102 180-213 (417)
454 PRK14191 bifunctional 5,10-met 93.4 0.28 6.1E-06 39.9 6.3 35 68-103 156-191 (285)
455 PRK12844 3-ketosteroid-delta-1 93.4 0.11 2.4E-06 46.1 4.3 31 71-102 8-38 (557)
456 PRK12843 putative FAD-binding 93.3 0.39 8.4E-06 42.8 7.7 54 115-180 229-283 (578)
457 PRK12921 2-dehydropantoate 2-r 93.3 0.13 2.8E-06 41.6 4.4 30 71-101 2-31 (305)
458 TIGR00936 ahcY adenosylhomocys 93.3 0.14 3.1E-06 43.6 4.8 35 68-103 194-228 (406)
459 TIGR01816 sdhA_forward succina 93.3 0.36 7.9E-06 42.9 7.5 53 116-178 128-180 (565)
460 PRK00676 hemA glutamyl-tRNA re 93.3 0.14 3E-06 42.7 4.5 34 69-102 174-207 (338)
461 PRK05329 anaerobic glycerol-3- 93.3 0.12 2.6E-06 44.4 4.2 31 71-102 4-34 (422)
462 PRK05808 3-hydroxybutyryl-CoA 93.3 0.13 2.7E-06 41.5 4.1 33 70-103 4-36 (282)
463 COG1206 Gid NAD(FAD)-utilizing 93.2 0.13 2.8E-06 42.8 4.1 37 71-108 5-41 (439)
464 TIGR03377 glycerol3P_GlpA glyc 93.2 0.4 8.6E-06 42.1 7.5 52 116-177 137-188 (516)
465 cd01078 NAD_bind_H4MPT_DH NADP 93.2 0.16 3.6E-06 38.4 4.6 33 69-102 28-61 (194)
466 PF03721 UDPG_MGDP_dh_N: UDP-g 93.2 0.15 3.3E-06 38.7 4.3 31 71-102 2-32 (185)
467 COG3075 GlpB Anaerobic glycero 93.2 0.13 2.8E-06 42.7 4.1 29 72-101 5-33 (421)
468 PF03807 F420_oxidored: NADP o 93.1 0.25 5.3E-06 32.8 4.8 30 71-101 1-33 (96)
469 COG2509 Uncharacterized FAD-de 93.1 0.29 6.2E-06 42.2 6.1 49 116-179 182-230 (486)
470 PRK05476 S-adenosyl-L-homocyst 93.0 0.16 3.6E-06 43.5 4.7 35 68-103 211-245 (425)
471 PRK00045 hemA glutamyl-tRNA re 93.0 0.16 3.5E-06 43.5 4.7 34 69-102 182-215 (423)
472 PRK06153 hypothetical protein; 93.0 0.14 3E-06 43.4 4.1 33 70-102 177-209 (393)
473 COG2907 Predicted NAD/FAD-bind 93.0 0.12 2.5E-06 43.3 3.6 34 67-102 6-39 (447)
474 PRK06130 3-hydroxybutyryl-CoA 93.0 0.17 3.7E-06 41.3 4.6 32 70-102 5-36 (311)
475 PRK12749 quinate/shikimate deh 92.9 0.2 4.3E-06 40.8 4.9 34 69-102 124-157 (288)
476 PRK14194 bifunctional 5,10-met 92.9 0.31 6.6E-06 40.0 5.9 35 68-103 158-193 (301)
477 cd01076 NAD_bind_1_Glu_DH NAD( 92.9 0.92 2E-05 35.6 8.4 34 68-102 30-64 (227)
478 PRK05597 molybdopterin biosynt 92.9 0.19 4.2E-06 42.1 4.8 34 70-103 29-62 (355)
479 TIGR01381 E1_like_apg7 E1-like 92.9 0.15 3.3E-06 45.8 4.4 33 70-102 339-371 (664)
480 PRK03803 murD UDP-N-acetylmura 92.8 0.5 1.1E-05 40.6 7.5 32 70-102 7-38 (448)
481 COG0373 HemA Glutamyl-tRNA red 92.8 0.17 3.6E-06 43.3 4.4 33 69-101 178-210 (414)
482 PRK05600 thiamine biosynthesis 92.8 0.19 4.1E-06 42.4 4.7 33 70-102 42-74 (370)
483 cd01490 Ube1_repeat2 Ubiquitin 92.8 0.15 3.3E-06 43.9 4.1 33 71-103 1-38 (435)
484 PRK14189 bifunctional 5,10-met 92.8 0.36 7.8E-06 39.3 6.1 35 68-103 157-192 (285)
485 cd01491 Ube1_repeat1 Ubiquitin 92.7 0.19 4E-06 41.0 4.4 34 70-103 20-53 (286)
486 PRK12550 shikimate 5-dehydroge 92.7 0.22 4.7E-06 40.2 4.8 34 69-102 122-155 (272)
487 PRK14573 bifunctional D-alanyl 92.7 0.31 6.7E-06 45.2 6.4 51 70-128 5-56 (809)
488 KOG1276|consensus 92.7 0.21 4.6E-06 42.7 4.7 36 68-103 10-46 (491)
489 PRK15181 Vi polysaccharide bio 92.6 0.28 6.1E-06 40.6 5.5 36 67-103 13-49 (348)
490 PRK04148 hypothetical protein; 92.6 0.18 3.9E-06 36.4 3.7 32 69-102 17-48 (134)
491 PRK08762 molybdopterin biosynt 92.6 0.2 4.2E-06 42.3 4.6 33 70-102 136-168 (376)
492 PRK14027 quinate/shikimate deh 92.6 0.22 4.7E-06 40.5 4.7 34 69-102 127-160 (283)
493 PTZ00075 Adenosylhomocysteinas 92.5 0.22 4.8E-06 43.3 4.8 35 68-103 253-287 (476)
494 KOG0024|consensus 92.5 0.57 1.2E-05 38.7 6.9 55 67-129 168-222 (354)
495 PRK14620 NAD(P)H-dependent gly 92.4 0.22 4.8E-06 40.9 4.6 31 71-102 2-32 (326)
496 COG1748 LYS9 Saccharopine dehy 92.4 0.21 4.5E-06 42.4 4.4 33 70-102 2-34 (389)
497 PRK12844 3-ketosteroid-delta-1 92.4 0.59 1.3E-05 41.5 7.5 53 116-180 217-270 (557)
498 TIGR03862 flavo_PP4765 unchara 92.3 1.4 3.1E-05 37.2 9.4 79 81-179 56-141 (376)
499 PLN02494 adenosylhomocysteinas 92.3 0.24 5.2E-06 43.0 4.8 35 68-103 253-287 (477)
500 PRK06057 short chain dehydroge 92.3 0.26 5.7E-06 38.6 4.7 33 69-102 7-40 (255)
No 1
>PRK12831 putative oxidoreductase; Provisional
Probab=99.94 E-value=3.3e-25 Score=190.07 Aligned_cols=174 Identities=28% Similarity=0.386 Sum_probs=134.9
Q ss_pred ChhhhhhC-CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 2 PTLKLRKD-GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 2 ~~~~l~~~-~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
+.+++.+. +||+||||||++.|+.|++| | .+.+||+++.+|+...+... .++..+. .....+++|+|||||++
T Consensus 219 ~~~~~~~~~~~d~viiAtGa~~~~~l~ip-G-~~~~gV~~~~~~l~~~~~~~--~~~~~~~--~~~~~gk~VvVIGgG~v 292 (464)
T PRK12831 219 TIDELLEEEGFDAVFIGSGAGLPKFMGIP-G-ENLNGVFSANEFLTRVNLMK--AYKPEYD--TPIKVGKKVAVVGGGNV 292 (464)
T ss_pred CHHHHHhccCCCEEEEeCCCCCCCCCCCC-C-cCCcCcEEHHHHHHHHHhcc--ccccccc--CcccCCCeEEEECCcHH
Confidence 44555443 69999999999668999999 5 78899999999997654210 0110000 11235678999999999
Q ss_pred HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200 81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW 156 (183)
Q Consensus 81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~ 156 (183)
|+|+|..|.++|+ +|++++|++...|+....+++.+.++||+|++++.+.++.. ++++++++++.++++ +++|+.
T Consensus 293 a~d~A~~l~r~Ga-~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~ 371 (464)
T PRK12831 293 AMDAARTALRLGA-EVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRR 371 (464)
T ss_pred HHHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCc
Confidence 9999999999998 59999998876788888888888899999999999999975 457899898877654 344543
Q ss_pred e--cCCCceEEEECCEEEEcccccccCC
Q psy16200 157 V--EDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 157 ~--~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
. ..+|++.+++||+||+|+|+.|++.
T Consensus 372 ~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 372 RPVEIEGSEFVLEVDTVIMSLGTSPNPL 399 (464)
T ss_pred cceecCCceEEEECCEEEECCCCCCChh
Confidence 2 2367777899999999999999863
No 2
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.94 E-value=3.5e-25 Score=202.56 Aligned_cols=175 Identities=25% Similarity=0.375 Sum_probs=137.3
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCC-CCcceEEEEcCCh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLP-ILKGTVIVLGAGD 79 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~VvViGgG~ 79 (183)
+|.++|++++||+||||||++.|+.++|| | .+.+||+++.+||...+... +.+ .+.....+ ..+++|+|||||+
T Consensus 383 it~~~l~~~~yDAV~LAtGA~~pr~l~Ip-G-~dl~GV~~a~dfL~~~~~~~--~~~-~~~~~~~~~~~Gk~VvVIGGG~ 457 (944)
T PRK12779 383 ATLEDLKAAGFWKIFVGTGAGLPTFMNVP-G-EHLLGVMSANEFLTRVNLMR--GLD-DDYETPLPEVKGKEVFVIGGGN 457 (944)
T ss_pred EeHHHhccccCCEEEEeCCCCCCCcCCCC-C-CcCcCcEEHHHHHHHHHhhc--ccc-ccccccccccCCCEEEEECCCH
Confidence 46788888789999999999779999999 5 78999999999998765321 000 00000011 1457799999999
Q ss_pred hHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEcc--CCcEEEEEEEEeee---cCCC
Q psy16200 80 TAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVK--DNKIAGMQFNRTEQ---NEKG 154 (183)
Q Consensus 80 ~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~--~~~v~~v~~~~~~~---~~~~ 154 (183)
+|+|+|..+.++|+ +|++++|++...||+...++..+.++||+|+++..+.++.++ +++++++++.++++ |.+|
T Consensus 458 tA~D~A~ta~R~Ga-~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~G 536 (944)
T PRK12779 458 TAMDAARTAKRLGG-NVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSG 536 (944)
T ss_pred HHHHHHHHHHHcCC-EEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcC
Confidence 99999999999998 699999997767898888888888999999999999999764 23688888776554 4455
Q ss_pred Ceec-CCCceEEEECCEEEEcccccccC
Q psy16200 155 EWVE-DEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 155 ~~~~-~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
+... .+|++.+++||+||+|+|+.||+
T Consensus 537 r~~~~~~G~e~~i~aD~VI~AiG~~p~~ 564 (944)
T PRK12779 537 RRSPKPTGEIERVPVDLVIMALGNTANP 564 (944)
T ss_pred ceeeecCCceEEEECCEEEEcCCcCCCh
Confidence 5422 36777899999999999999985
No 3
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=6.2e-25 Score=202.25 Aligned_cols=175 Identities=29% Similarity=0.422 Sum_probs=138.4
Q ss_pred Chhhhh-hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 2 PTLKLR-KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 2 ~~~~l~-~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
+++++. +++||+||||||++.|+.|+|| | .+.++|+++.+||...+.... ..+..++ .....+++|+|||||++
T Consensus 508 ~~~~l~~~~~yDaViIATGa~~pr~l~Ip-G-~~l~gV~~a~~fL~~~~~~~~-~~~~~~~--~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 508 TVPQLMNDKGFDAVFLGVGAGAPTFLGIP-G-EFAGQVYSANEFLTRVNLMGG-DKFPFLD--TPISLGKSVVVIGAGNT 582 (1006)
T ss_pred CHHHHhhccCCCEEEEecCCCCCCCCCCC-C-cCCCCcEEHHHHHHHHHhcCc-ccccccc--CCccCCCEEEEECCcHH
Confidence 566665 4579999999999778999999 5 788999999999988653100 0000001 11235678999999999
Q ss_pred HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200 81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW 156 (183)
Q Consensus 81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~ 156 (183)
|+|+|..+.++|+++|++++|+....|++...++..+.++||+|++++.+.++.. ++++|+++++.++++ |.+|++
T Consensus 583 A~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~ 662 (1006)
T PRK12775 583 AMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRR 662 (1006)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCc
Confidence 9999999999999889999998877788888888888999999999999999975 467899999887654 344554
Q ss_pred ec-CCCceEEEECCEEEEcccccccC
Q psy16200 157 VE-DEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 157 ~~-~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.+ .+|+..+++||+||+|+|+.||+
T Consensus 663 ~~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 663 KPMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred cccCCCceEEEEcCEEEECCCcCCCh
Confidence 32 35666789999999999999985
No 4
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=2.9e-24 Score=193.70 Aligned_cols=175 Identities=26% Similarity=0.392 Sum_probs=137.2
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
++++++++++||+||||||++.|+.|++| | .+.+||+++.+|+...+... .++..+. .....+++|+|||||++
T Consensus 508 v~~~~l~~~~ydavvlAtGa~~~~~l~ip-G-~~~~gV~~~~~~l~~~~~~~--~~~~~~~--~~~~~gk~VvVIGgG~~ 581 (752)
T PRK12778 508 ITIEELEEEGFKGIFIASGAGLPNFMNIP-G-ENSNGVMSSNEYLTRVNLMD--AASPDSD--TPIKFGKKVAVVGGGNT 581 (752)
T ss_pred CCHHHHhhcCCCEEEEeCCCCCCCCCCCC-C-CCCCCcEEHHHHHHHHhhcc--ccccccc--CcccCCCcEEEECCcHH
Confidence 46778877889999999999668999999 5 78899999999998654310 0000000 11234577999999999
Q ss_pred HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200 81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW 156 (183)
Q Consensus 81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~ 156 (183)
|+|+|..+.++|+++|++++|++...|+....++..+.++||+|++++.+.++.. ++++++++++.++++ +.+|+.
T Consensus 582 a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~ 661 (752)
T PRK12778 582 AMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRR 661 (752)
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCC
Confidence 9999999999998669999998776688888788888999999999999999975 456788888876654 234443
Q ss_pred --ecCCCceEEEECCEEEEcccccccC
Q psy16200 157 --VEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 157 --~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
...+|++++++||+||+|+|+.||+
T Consensus 662 ~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 662 RPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred CceecCCCeEEEECCEEEECcCCCCCc
Confidence 2346777889999999999999986
No 5
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.93 E-value=5.4e-24 Score=181.99 Aligned_cols=174 Identities=28% Similarity=0.401 Sum_probs=132.2
Q ss_pred ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+.+++.. .||+||||||++.|+.|++| | .+.++|+++.+++...+...... +..+. .....+++|+|||||++|
T Consensus 211 ~~~~~~~-~yd~viiAtGa~~p~~~~ip-G-~~~~gv~~~~~~l~~~~~~~~~~-~~~~~--~~~~~gk~VvVIGgG~~a 284 (449)
T TIGR01316 211 TLEELFS-QYDAVFIGTGAGLPKLMNIP-G-EELCGVYSANDFLTRANLMKAYE-FPHAD--TPVYAGKSVVVIGGGNTA 284 (449)
T ss_pred CHHHHHh-hCCEEEEeCCCCCCCcCCCC-C-CCCCCcEEHHHHHHHHhhccccc-ccccC--CcccCCCeEEEECCCHHH
Confidence 4455544 59999999998568889999 5 68889999999987654310000 00000 012345779999999999
Q ss_pred HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe-
Q psy16200 82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW- 156 (183)
Q Consensus 82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~- 156 (183)
+|+|..|.++|+ +|++++|+++..|+....+++.+.++||+|++++.+.++.. ++++++++++.++++ +.+|+.
T Consensus 285 ~d~A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~ 363 (449)
T TIGR01316 285 VDSARTALRLGA-EVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERR 363 (449)
T ss_pred HHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCee
Confidence 999999999998 59999998876688888888888999999999999999976 356788888876543 334433
Q ss_pred -ecCCCceEEEECCEEEEcccccccCC
Q psy16200 157 -VEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 157 -~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
...+++.++++||+||+|+|+.||+.
T Consensus 364 ~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 364 FLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred eeecCCceEEEECCEEEECCCCCCCch
Confidence 23466777899999999999999863
No 6
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.92 E-value=1.2e-23 Score=189.85 Aligned_cols=174 Identities=22% Similarity=0.301 Sum_probs=133.7
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
+|.+++++++||+||||||++.|+.++|| | .+.++|+++.+||...+..... ..........+++|||||||++
T Consensus 488 it~edl~~~gyDAV~IATGA~kpr~L~IP-G-eda~GV~sA~DfL~~l~~~~~~----~~~~~~~~~~Gk~VVVIGGGnT 561 (1028)
T PRK06567 488 ITKEQAFDLGFDHIAFCIGAGQPKVLDIE-N-FEAKGVKTASDFLMTLQSGGAF----LKNSNTNMVIRMPIAVIGGGLT 561 (1028)
T ss_pred CCHHHHhhcCCCEEEEeCCCCCCCCCCCC-C-ccCCCeEEHHHHHHHHhhcccc----cccccCcccCCCCEEEEcCcHH
Confidence 47888888899999999999779999999 5 7889999999999876431000 0000001224567999999999
Q ss_pred HHHHHHHHHH---------------------------------------------------cCCceEEEEEeecCCcCCC
Q psy16200 81 AFDCATSALR---------------------------------------------------CGANKVLVVFRKGCTNIRA 109 (183)
Q Consensus 81 g~e~A~~l~~---------------------------------------------------~G~~~V~lv~r~~~~~~~~ 109 (183)
|+|+|..+.+ .| .|++++|++...||+
T Consensus 562 AmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G--~VtIvYRr~~~empA 639 (1028)
T PRK06567 562 SLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLG--GATVYYRGRLQDSPA 639 (1028)
T ss_pred HHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCC--ceEEEecCChhhCCC
Confidence 9999995543 23 299999999888998
Q ss_pred C---HHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe------------ecCCCceEEEECCE
Q psy16200 110 V---PEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW------------VEDEEQRIKLKANY 170 (183)
Q Consensus 110 ~---~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~------------~~~~g~~~~i~~D~ 170 (183)
. .+|++.+.++||.|+++..+.++.. ++++++++++.++.. +..+.| .+..+++.+++||+
T Consensus 640 ~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 719 (1028)
T PRK06567 640 YKLNHEELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKT 719 (1028)
T ss_pred CCCCHHHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCE
Confidence 6 7889999999999999999999976 458899999987651 111222 12345778999999
Q ss_pred EEEcccccccCC
Q psy16200 171 IISAFGSTLLDN 182 (183)
Q Consensus 171 Vi~a~G~~p~~~ 182 (183)
||+|+|+.||+.
T Consensus 720 vi~A~G~~~~~~ 731 (1028)
T PRK06567 720 VIMAIGIENNTQ 731 (1028)
T ss_pred EEEecccCCccc
Confidence 999999999975
No 7
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.91 E-value=1.9e-22 Score=172.83 Aligned_cols=167 Identities=34% Similarity=0.486 Sum_probs=129.1
Q ss_pred hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHH
Q psy16200 3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 82 (183)
Q Consensus 3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~ 82 (183)
.+++. ..||+||||||++.|+.+++| | .+.++|+++.+++....... .. .....+++|+|||||++|+
T Consensus 219 ~~~~~-~~~d~vvlAtGa~~~~~~~i~-G-~~~~gv~~~~~~l~~~~~~~--------~~-~~~~~g~~VvViGgG~~g~ 286 (457)
T PRK11749 219 LDELR-AGYDAVFIGTGAGLPRFLGIP-G-ENLGGVYSAVDFLTRVNQAV--------AD-YDLPVGKRVVVIGGGNTAM 286 (457)
T ss_pred HHHHH-hhCCEEEEccCCCCCCCCCCC-C-ccCCCcEEHHHHHHHHhhcc--------cc-ccCCCCCeEEEECCCHHHH
Confidence 34444 569999999999667888999 5 67889999999988754310 00 0122467899999999999
Q ss_pred HHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee---cCCCCee-c
Q psy16200 83 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ---NEKGEWV-E 158 (183)
Q Consensus 83 e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~---~~~~~~~-~ 158 (183)
|+|..|.++|+++|++++|++...|+....++..+.++||+|++++.+.++.++++.++++++.++.+ +.+|++. .
T Consensus 287 e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~ 366 (457)
T PRK11749 287 DAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVP 366 (457)
T ss_pred HHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccC
Confidence 99999999998789999998765688888888888999999999999999986555566777765432 3334321 2
Q ss_pred CCCceEEEECCEEEEcccccccC
Q psy16200 159 DEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 159 ~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.+++..+++||+||+|+|++||+
T Consensus 367 ~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 367 IEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred CCCceEEEECCEEEECccCCCCc
Confidence 34667789999999999999985
No 8
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.91 E-value=1.5e-22 Score=179.91 Aligned_cols=165 Identities=27% Similarity=0.414 Sum_probs=128.5
Q ss_pred ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+.+++.. .||+||||||++.++.+++| | .+.++|+++.+++...... .....+++|+|||||++|
T Consensus 271 ~~~~~~~-~~DaVilAtGa~~~~~~~ip-G-~~~~gv~~~~~~l~~~~~~------------~~~~~gk~VvVIGgG~~a 335 (652)
T PRK12814 271 TLEELQK-EFDAVLLAVGAQKASKMGIP-G-EELPGVISGIDFLRNVALG------------TALHPGKKVVVIGGGNTA 335 (652)
T ss_pred CHHHHHh-hcCEEEEEcCCCCCCCCCCC-C-cCcCCcEeHHHHHHHhhcC------------CcccCCCeEEEECCCHHH
Confidence 3455554 49999999999755678999 5 7889999999998765421 123456789999999999
Q ss_pred HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEee---ecCCCCe--
Q psy16200 82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTE---QNEKGEW-- 156 (183)
Q Consensus 82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~---~~~~~~~-- 156 (183)
+|+|..+.++|+++|++++|++...|++...++..+.++||+|++++.+.++.++++.+. ++..+++ .+.+|+.
T Consensus 336 ~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~-v~~~~~~~~~~d~~G~~~~ 414 (652)
T PRK12814 336 IDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLE-LTAIKMQQGEPDESGRRRP 414 (652)
T ss_pred HHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEE-EEEEEEEecccCCCCCCcc
Confidence 999999999998789999999876789888888888899999999999999986555543 3333322 2334443
Q ss_pred ecCCCceEEEECCEEEEcccccccCC
Q psy16200 157 VEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 157 ~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
...+|++..+++|+||+|+|+.||++
T Consensus 415 ~~~~g~~~~i~~D~VI~AiG~~p~~~ 440 (652)
T PRK12814 415 VPVEGSEFTLQADTVISAIGQQVDPP 440 (652)
T ss_pred eecCCceEEEECCEEEECCCCcCCcc
Confidence 23467777899999999999999864
No 9
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=3.6e-22 Score=177.75 Aligned_cols=175 Identities=28% Similarity=0.427 Sum_probs=133.3
Q ss_pred ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChh
Q psy16200 2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDT 80 (183)
Q Consensus 2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~ 80 (183)
+++++.. +||+||+|||+..++.+++| | .+.+||+++.+|+....... .++....+. .. ...+++|+|||||++
T Consensus 405 ~~~~~~~-~~DavilAtGa~~~~~l~i~-g-~~~~Gv~~a~~~l~~~~~~~-~~~~~~~~~-~~~~~~gk~VvVIGgG~~ 479 (654)
T PRK12769 405 SLESLLE-DYDAVFVGVGTYRSMKAGLP-N-EDAPGVYDALPFLIANTKQV-MGLEELPEE-PFINTAGLNVVVLGGGDT 479 (654)
T ss_pred CHHHHHh-cCCEEEEeCCCCCCCCCCCC-C-CCCCCeEEhHHHHHHHHhhh-ccCcccccc-ccccCCCCeEEEECCcHH
Confidence 4455554 59999999999767788999 5 78899999988875432110 000000000 00 123467999999999
Q ss_pred HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200 81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW 156 (183)
Q Consensus 81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~ 156 (183)
|+|+|..+.++|+++|++++|++...|++...+++.++++||+|+++..+.++.. ++++++++++.++++ +++|++
T Consensus 480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~ 559 (654)
T PRK12769 480 AMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRR 559 (654)
T ss_pred HHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCC
Confidence 9999999999998789999998776688888888889999999999999999975 457898898876654 445554
Q ss_pred --ecCCCceEEEECCEEEEcccccccC
Q psy16200 157 --VEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 157 --~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
...+|+++++++|+||+|+|+.|++
T Consensus 560 ~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 586 (654)
T PRK12769 560 RPVPIPGSEFVMPADAVIMAFGFNPHG 586 (654)
T ss_pred cceeCCCceEEEECCEEEECccCCCCc
Confidence 2356788899999999999999985
No 10
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.90 E-value=5.7e-22 Score=170.25 Aligned_cols=174 Identities=29% Similarity=0.427 Sum_probs=130.4
Q ss_pred hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChhH
Q psy16200 3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDTA 81 (183)
Q Consensus 3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~g 81 (183)
.+++.. .||+||+|||+..++.++|| | .+.+||+++.+|+....... .+....+.. .+ ...+++|+|||||++|
T Consensus 220 ~~~~~~-~~D~vilAtGa~~~~~~~i~-g-~~~~gV~~a~~~l~~~~~~~-~~~~~~~~~-~~~~~~gk~VvVIGgG~~a 294 (467)
T TIGR01318 220 LDDLLE-DYDAVFLGVGTYRSMRGGLP-G-EDAPGVLQALPFLIANTRQL-MGLPESPEE-PLIDVEGKRVVVLGGGDTA 294 (467)
T ss_pred HHHHHh-cCCEEEEEeCCCCCCcCCCC-C-cCCCCcEEHHHHHHHHHHHh-cCCCccccc-cccccCCCEEEEECCcHHH
Confidence 345543 69999999999755678999 5 78899999998876432110 000000000 01 1245679999999999
Q ss_pred HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCee
Q psy16200 82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEWV 157 (183)
Q Consensus 82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~~ 157 (183)
+|+|..+.++|+++||+++|++...|+....++.++.++||+|++++.+.++.. ++++++++++.++++ +++|+..
T Consensus 295 ~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~ 374 (467)
T TIGR01318 295 MDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRR 374 (467)
T ss_pred HHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCcc
Confidence 999999999998789999998876688888888888999999999999999975 356788888765543 3455432
Q ss_pred --cCCCceEEEECCEEEEcccccccC
Q psy16200 158 --EDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 158 --~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
..++++++++||.||+|+|++|++
T Consensus 375 ~~~~~g~~~~i~~D~Vi~a~G~~p~~ 400 (467)
T TIGR01318 375 PVPVAGSEFVLPADVVIMAFGFQPHA 400 (467)
T ss_pred ceecCCceEEEECCEEEECCcCCCCc
Confidence 245777899999999999999985
No 11
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=4.3e-22 Score=176.73 Aligned_cols=176 Identities=24% Similarity=0.337 Sum_probs=133.9
Q ss_pred ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+++++.. +||+||+|||+..++.+++| | .+.+|++++.+|+....... .++............+++|+|||||++|
T Consensus 388 ~~~~l~~-~~DaV~latGa~~~~~~~i~-g-~~~~gv~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~gk~vvViGgG~~a 463 (639)
T PRK12809 388 TFSDLTS-EYDAVFIGVGTYGMMRADLP-H-EDAPGVIQALPFLTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGDTT 463 (639)
T ss_pred CHHHHHh-cCCEEEEeCCCCCCCCCCCC-C-CccCCcEeHHHHHHHHHHhh-ccCccccccccccCCCCeEEEECCcHHH
Confidence 4455544 69999999999777788999 5 78899999999886542110 0000000000001245679999999999
Q ss_pred HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe-
Q psy16200 82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW- 156 (183)
Q Consensus 82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~- 156 (183)
+|+|..+.++|+++|++++|++...|+...+++..+.++||+|++++.+.++.+ ++++|+++++.++++ +++|++
T Consensus 464 ~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~ 543 (639)
T PRK12809 464 MDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRR 543 (639)
T ss_pred HHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCcc
Confidence 999999999998889999998876788888888888999999999999999975 357798888766654 445654
Q ss_pred -ecCCCceEEEECCEEEEcccccccC
Q psy16200 157 -VEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 157 -~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
...+|++++++||+||+|+|+.|++
T Consensus 544 ~~~~~g~~~~i~aD~Vi~AiG~~p~~ 569 (639)
T PRK12809 544 PRPVAGSEFELPADVLIMAFGFQAHA 569 (639)
T ss_pred ceecCCceEEEECCEEEECcCCCCCc
Confidence 3456788899999999999999975
No 12
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.90 E-value=3.7e-22 Score=171.39 Aligned_cols=170 Identities=22% Similarity=0.303 Sum_probs=126.9
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
+++++|++ .||+||||||+..++.++|| | .+.+||+++.+|+.+++.... ++..+ .....+++|+|||+|++
T Consensus 106 vtl~~L~~-~yDaVIlAtGa~~~~~l~Ip-G-~d~~gV~~a~~fl~~~ng~~d--~~~~~---~~~~~gk~VvVIGgGnv 177 (491)
T PLN02852 106 VSLSELRD-LYHVVVLAYGAESDRRLGIP-G-EDLPGVLSAREFVWWYNGHPD--CVHLP---PDLKSSDTAVVLGQGNV 177 (491)
T ss_pred ccHHHHhh-hCCEEEEecCCCCCCCCCCC-C-CCCCCeEEHHHHHHHhhcchh--hhhhh---hcccCCCEEEEECCCHH
Confidence 46788876 59999999999755889999 5 788999999999877653100 00000 01224577999999999
Q ss_pred HHHHHHHHHHc--------------------CCceEEEEEeecCCcCCCCHHHHHH------------------------
Q psy16200 81 AFDCATSALRC--------------------GANKVLVVFRKGCTNIRAVPEEVQL------------------------ 116 (183)
Q Consensus 81 g~e~A~~l~~~--------------------G~~~V~lv~r~~~~~~~~~~~~~~~------------------------ 116 (183)
|+|+|+.|.+. |+++|++++||+..+++....|+..
T Consensus 178 AlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~ 257 (491)
T PLN02852 178 ALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEE 257 (491)
T ss_pred HHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhh
Confidence 99999999876 8889999999987666655444322
Q ss_pred -----------------H-HH---------cCcEEEeCCcceEEEc-c--CCcEEEEEEEEeeecC---CCCee-cCCCc
Q psy16200 117 -----------------A-WE---------EKCEFLPFMSPVQVDV-K--DNKIAGMQFNRTEQNE---KGEWV-EDEEQ 162 (183)
Q Consensus 117 -----------------~-~~---------~gv~~~~~~~~~~i~~-~--~~~v~~v~~~~~~~~~---~~~~~-~~~g~ 162 (183)
+ .+ +++.|++..++.+|.. + +++|+++++.++++.. +++.. ..+|+
T Consensus 258 ~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge 337 (491)
T PLN02852 258 ELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGE 337 (491)
T ss_pred hhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCC
Confidence 1 12 4799999999999984 2 2689999999887632 34432 23678
Q ss_pred eEEEECCEEEEccccc
Q psy16200 163 RIKLKANYIISAFGST 178 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~ 178 (183)
.++++||.||.|+||+
T Consensus 338 ~~~i~~D~Vi~aIG~~ 353 (491)
T PLN02852 338 FEDLPCGLVLKSIGYK 353 (491)
T ss_pred EEEEECCEEEEeecCC
Confidence 8899999999999998
No 13
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.89 E-value=7.2e-22 Score=179.86 Aligned_cols=166 Identities=27% Similarity=0.430 Sum_probs=125.6
Q ss_pred ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+++++++.+||+||||||++.++.+++| | .+ ++++++.+++...+... .....+++|+|||||++|
T Consensus 615 ~le~L~~~gYDaVILATGA~~~~~l~Ip-G-~~-~gV~saldfL~~~k~~~-----------~~~~~GKrVVVIGGGnVA 680 (1019)
T PRK09853 615 TVEQLKNEGYDYVVVAIGADKNGGLKLE-G-GN-QNVIKALPFLEEYKNKG-----------TALKLGKHVVVVGGGNTA 680 (1019)
T ss_pred EhhhheeccCCEEEECcCCCCCCCCCCC-C-cc-CCceehHHHHHHHhhhc-----------ccccCCCEEEEECCChHH
Confidence 4567777789999999999767778899 4 44 68999999998753210 123457889999999999
Q ss_pred HHHHHHHHHc-CCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCee-cC
Q psy16200 82 FDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWV-ED 159 (183)
Q Consensus 82 ~e~A~~l~~~-G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~-~~ 159 (183)
+|+|+.+.+. |+++|++++|++...||+..+++..+.++||+|+++..+.++.. +++++...+.-...+.+|+.. ..
T Consensus 681 mD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~ 759 (1019)
T PRK09853 681 MDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVE 759 (1019)
T ss_pred HHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEee
Confidence 9999999888 45689999998876789988889888899999999999999964 455432111101113345432 23
Q ss_pred CCceEEEECCEEEEcccccccCC
Q psy16200 160 EEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 160 ~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+++..+++||+||+|+|+.||++
T Consensus 760 tg~~~~I~aD~VIvAIG~~Pnte 782 (1019)
T PRK09853 760 TGETVTLEADTVITAIGEQVDTE 782 (1019)
T ss_pred CCCeEEEEeCEEEECCCCcCChh
Confidence 56678999999999999999864
No 14
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.89 E-value=1.6e-21 Score=167.65 Aligned_cols=167 Identities=26% Similarity=0.306 Sum_probs=123.5
Q ss_pred hhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200 4 LKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD 83 (183)
Q Consensus 4 ~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e 83 (183)
+++. ..||+||+|||+..++.+++| | .+.+||+++.+|+...+.... +. ..+. .....+++|+|||||++|+|
T Consensus 223 ~~~~-~~~d~vvlAtGa~~~~~l~ip-G-~~~~gV~~~~~~l~~~~~~~~-~~-~~~~--~~~~~gk~VvVIGgG~~g~e 295 (471)
T PRK12810 223 EELL-AEYDAVFLGTGAYKPRDLGIP-G-RDLDGVHFAMDFLIQNTRRVL-GD-ETEP--FISAKGKHVVVIGGGDTGMD 295 (471)
T ss_pred HHHH-hhCCEEEEecCCCCCCcCCCC-C-ccCCCcEEHHHHHHHHHhhhc-cc-cccc--cccCCCCEEEEECCcHHHHH
Confidence 4443 369999999999668889999 5 788999999998876432100 00 0000 01234578999999999999
Q ss_pred HHHHHHHcCCceEEEEEeecCCcCCCCHH-------------HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee
Q psy16200 84 CATSALRCGANKVLVVFRKGCTNIRAVPE-------------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ 150 (183)
Q Consensus 84 ~A~~l~~~G~~~V~lv~r~~~~~~~~~~~-------------~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~ 150 (183)
+|..+.++|+++|+++++.. ++.... ++..+.++||++++++.+.++.++++++++|++.++.+
T Consensus 296 ~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 296 CVGTAIRQGAKSVTQRDIMP---MPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL 372 (471)
T ss_pred HHHHHHHcCCCeEEEccccC---CCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence 99999999987899665432 333332 56677889999999999999986678899898876654
Q ss_pred cCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 151 NEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 151 ~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.++++...+++.++++||+||+|+|+.|++
T Consensus 373 -~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~ 402 (471)
T PRK12810 373 -GEGDFEPVEGSEFVLPADLVLLAMGFTGPE 402 (471)
T ss_pred -cCCCccccCCceEEEECCEEEECcCcCCCc
Confidence 334333456777899999999999999985
No 15
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.87 E-value=6.1e-21 Score=174.32 Aligned_cols=165 Identities=26% Similarity=0.417 Sum_probs=125.2
Q ss_pred ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+++++.+.+||+||||||++.++++++| | .+ ++++++.+++....... .....+++|+|||||++|
T Consensus 613 ~ve~l~~~gYDaVIIATGA~~~~~l~I~-G-~~-~~v~~avefL~~~~~~~-----------~~~~~GK~VVVIGGGnvA 678 (1012)
T TIGR03315 613 TVAELKNQGYKYVILAIGAWKHGPLRLE-G-GG-ERVLKSLEFLRAFKEGP-----------TINPLGKHVVVVGGGNTA 678 (1012)
T ss_pred EhhhhhcccccEEEECCCCCCCCCCCcC-C-CC-cceeeHHHHHHHhhccc-----------cccccCCeEEEECCCHHH
Confidence 4566777789999999999767778888 4 33 58889999998754310 113457889999999999
Q ss_pred HHHHHHHHHc-CCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeec-C
Q psy16200 82 FDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE-D 159 (183)
Q Consensus 82 ~e~A~~l~~~-G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~-~ 159 (183)
+|+|+.+.+. |+++|++++|++...|++..+++..+.++||+|+++..+.++. +++++...+...+.+.+|+... .
T Consensus 679 mD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~ 756 (1012)
T TIGR03315 679 MDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVG 756 (1012)
T ss_pred HHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeec
Confidence 9999999887 8778999999886668888888888888999999999999886 3444321111111233454432 3
Q ss_pred CCceEEEECCEEEEcccccccCC
Q psy16200 160 EEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 160 ~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+|+..+++||+||+|+|+.||++
T Consensus 757 ~Gee~~I~aD~VIvAiG~~Pnt~ 779 (1012)
T TIGR03315 757 TGETVDLPADTVIAAVGEQVDTD 779 (1012)
T ss_pred CCCeEEEEeCEEEEecCCcCChH
Confidence 57778899999999999999863
No 16
>PRK13984 putative oxidoreductase; Provisional
Probab=99.87 E-value=1.4e-20 Score=166.16 Aligned_cols=170 Identities=24% Similarity=0.366 Sum_probs=126.9
Q ss_pred hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHH
Q psy16200 3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF 82 (183)
Q Consensus 3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~ 82 (183)
.+.+. ..||+||+|||++.|+.+++| | .+..+++++.+++...+...+ + .. .....+++|+|||||++|+
T Consensus 362 ~~~~~-~~yD~vilAtGa~~~r~l~i~-G-~~~~gv~~a~~~l~~~~~~~~-~-----~~-~~~~~~k~VvVIGGG~~g~ 431 (604)
T PRK13984 362 LEELR-EKHDAVFLSTGFTLGRSTRIP-G-TDHPDVIQALPLLREIRDYLR-G-----EG-PKPKIPRSLVVIGGGNVAM 431 (604)
T ss_pred HHHHH-hcCCEEEEEcCcCCCccCCCC-C-cCCcCeEeHHHHHHHHHhhhc-c-----CC-CcCCCCCcEEEECCchHHH
Confidence 44554 469999999999767889999 5 688899999999876653210 0 00 1123467899999999999
Q ss_pred HHHHHHHHcC-----CceEEEEEee-cCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee--cCCC
Q psy16200 83 DCATSALRCG-----ANKVLVVFRK-GCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ--NEKG 154 (183)
Q Consensus 83 e~A~~l~~~G-----~~~V~lv~r~-~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~--~~~~ 154 (183)
|+|..|++++ ..+|+++..+ ....++....++..+.++||+|+++..+.++..++++++++++.++.. +++|
T Consensus 432 e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G 511 (604)
T PRK13984 432 DIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEG 511 (604)
T ss_pred HHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCC
Confidence 9999999885 2468887532 334577777777778889999999999999876677898888765421 3445
Q ss_pred Cee--cCCCceEEEECCEEEEcccccccCC
Q psy16200 155 EWV--EDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 155 ~~~--~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
++. ..+++..++++|.||+|+|+.||++
T Consensus 512 ~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~ 541 (604)
T PRK13984 512 RFNPKFDESDQIIVEADMVVEAIGQAPDYS 541 (604)
T ss_pred CccceecCCceEEEECCEEEEeeCCCCChh
Confidence 432 2456678899999999999999864
No 17
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.85 E-value=1.4e-20 Score=160.17 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=107.1
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 89 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~ 89 (183)
.+|.+|||||| +|+.||+| + .+...++++.+.+.. ..+|++++|||||++|+|+|..++
T Consensus 135 ~a~~iiIATGS-~p~~~~~~-~-~~~~~~~~s~~~l~~------------------~~lP~~lvIiGgG~IGlE~a~~~~ 193 (454)
T COG1249 135 TADNIIIATGS-RPRIPPGP-G-IDGARILDSSDALFL------------------LELPKSLVIVGGGYIGLEFASVFA 193 (454)
T ss_pred EeCEEEEcCCC-CCcCCCCC-C-CCCCeEEechhhccc------------------ccCCCEEEEECCCHHHHHHHHHHH
Confidence 57999999999 59999999 5 455667776665431 267899999999999999999999
Q ss_pred HcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200 90 RCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI 164 (183)
Q Consensus 90 ~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~ 164 (183)
++|+ +|||++|+++. +|..++++. .+.+.|+.+++++.+.++...++.+. +++. ++...
T Consensus 194 ~LG~-~VTiie~~~~i-Lp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~-v~~~-------------~g~~~ 257 (454)
T COG1249 194 ALGS-KVTVVERGDRI-LPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVL-VTLE-------------DGEGG 257 (454)
T ss_pred HcCC-cEEEEecCCCC-CCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEE-EEEe-------------cCCCC
Confidence 9998 69999999875 787776654 34556899999999999976444343 4442 22223
Q ss_pred EEECCEEEEcccccccCC
Q psy16200 165 KLKANYIISAFGSTLLDN 182 (183)
Q Consensus 165 ~i~~D~Vi~a~G~~p~~~ 182 (183)
++++|.|++|+|++||++
T Consensus 258 ~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 258 TIEADAVLVAIGRKPNTD 275 (454)
T ss_pred EEEeeEEEEccCCccCCC
Confidence 789999999999999987
No 18
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=4.7e-21 Score=163.23 Aligned_cols=174 Identities=30% Similarity=0.411 Sum_probs=134.4
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCCh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGD 79 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~ 79 (183)
+|.++|+++ ||+|++|||+..|+.+++| | .++++|+++.+||...+... .+. ..+. ..+. .+++|+|||||+
T Consensus 200 it~~~L~~e-~Dav~l~~G~~~~~~l~i~-g-~d~~gv~~A~dfL~~~~~~~-~~~--~~~~-~~~~~~gk~vvVIGgG~ 272 (457)
T COG0493 200 ITLEELLKE-YDAVFLATGAGKPRPLDIP-G-EDAKGVAFALDFLTRLNKEV-LGD--FAED-RTPPAKGKRVVVIGGGD 272 (457)
T ss_pred CCHHHHHHh-hCEEEEeccccCCCCCCCC-C-cCCCcchHHHHHHHHHHHHH-hcc--cccc-cCCCCCCCeEEEECCCC
Confidence 578999998 8999999999999999999 5 78999999999998877531 110 0000 1122 236799999999
Q ss_pred hHHHHHHHHHHcCCceEEEEEeecCC-cCC-----CCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecC
Q psy16200 80 TAFDCATSALRCGANKVLVVFRKGCT-NIR-----AVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNE 152 (183)
Q Consensus 80 ~g~e~A~~l~~~G~~~V~lv~r~~~~-~~~-----~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~ 152 (183)
+++||+....++|+++|+.+++.... .+. +...++..+.++|+++.+...+.++.. ++++|+++++.++++.+
T Consensus 273 Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~ 352 (457)
T COG0493 273 TAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE 352 (457)
T ss_pred CHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccC
Confidence 99999999999999999999754332 222 223466778899999999999999987 67889999887765522
Q ss_pred C----CCe--ecCCCceEEEECCEEEEcccccccC
Q psy16200 153 K----GEW--VEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 153 ~----~~~--~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
. ++. ....|+++.+++|+|++|+|+.|+.
T Consensus 353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~ 387 (457)
T COG0493 353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDA 387 (457)
T ss_pred cccccccccCccccCceEEehHHHHHHHhccCCCc
Confidence 1 122 3567899999999999999998874
No 19
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.84 E-value=3e-19 Score=156.64 Aligned_cols=159 Identities=28% Similarity=0.474 Sum_probs=127.9
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
.+||+||+|||+..++.+.++ + .+..|++...+++...... .....+++|+|+|||++|+|++..+
T Consensus 221 ~~~D~Vi~AtG~~~~~~~~i~-g-~~~~gv~~~~~~l~~~~~~------------~~~~~gk~v~ViGgg~~a~d~a~~a 286 (564)
T PRK12771 221 GEFDAVFVAIGAQLGKRLPIP-G-EDAAGVLDAVDFLRAVGEG------------EPPFLGKRVVVIGGGNTAMDAARTA 286 (564)
T ss_pred hhCCEEEEeeCCCCCCcCCCC-C-CccCCcEEHHHHHHHhhcc------------CCcCCCCCEEEECChHHHHHHHHHH
Confidence 469999999999766778899 5 6778999988888654321 1123467799999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee---cCCCCeecCCCceEE
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ---NEKGEWVEDEEQRIK 165 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~---~~~~~~~~~~g~~~~ 165 (183)
.++|+++|++++|++...++....++..+.++||+|+++..+.++..+++++.++++.+++. +.+|++.+.+++.++
T Consensus 287 ~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~ 366 (564)
T PRK12771 287 RRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEET 366 (564)
T ss_pred HHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEE
Confidence 99997789999998876788888888888889999999999999986544544777765543 455665555777889
Q ss_pred EECCEEEEcccccccC
Q psy16200 166 LKANYIISAFGSTLLD 181 (183)
Q Consensus 166 i~~D~Vi~a~G~~p~~ 181 (183)
+++|+||+|+|+.|++
T Consensus 367 i~~D~Vi~A~G~~p~~ 382 (564)
T PRK12771 367 LEADLVVLAIGQDIDS 382 (564)
T ss_pred EECCEEEECcCCCCch
Confidence 9999999999999975
No 20
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.83 E-value=3.7e-19 Score=153.56 Aligned_cols=168 Identities=23% Similarity=0.291 Sum_probs=116.7
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCC-CCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKK-ESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..||+||+|||++.|+.|++| | .+.+||+++.+++.......... ..+. ......+++|+|||||++|+|+|..
T Consensus 227 ~~~d~VilAtGa~~~~~l~i~-G-~~~~gV~~~~~~l~~~~~~~~~~---~~~~~~~~~~~gk~VvViGgG~~g~d~a~~ 301 (485)
T TIGR01317 227 EQFDAVVLAGGATKPRDLPIP-G-RELKGIHYAMEFLPSATKALLGK---DFKDIIFIKAKGKKVVVIGGGDTGADCVGT 301 (485)
T ss_pred hhCCEEEEccCCCCCCcCCCC-C-cCCCCcEeHHHHHHHHhhhhccc---cccccccccCCCCEEEEECCcHHHHHHHHH
Confidence 469999999999668899999 5 78899999998887643210000 0000 0011245679999999999999999
Q ss_pred HHHcCCceEEEEEeecCCc--------CCCCHH--HHHHHHHc-----Cc-EEEeCCcceEEEcc-CCcEEEEEEEEeee
Q psy16200 88 ALRCGANKVLVVFRKGCTN--------IRAVPE--EVQLAWEE-----KC-EFLPFMSPVQVDVK-DNKIAGMQFNRTEQ 150 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~--------~~~~~~--~~~~~~~~-----gv-~~~~~~~~~~i~~~-~~~v~~v~~~~~~~ 150 (183)
+.++|+++|+++++.+... |+.... +++.+.++ |+ .++++..+.++.++ +++++++++.++++
T Consensus 302 a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 381 (485)
T TIGR01317 302 SLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEW 381 (485)
T ss_pred HHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEe
Confidence 9999987899999765421 122211 23333333 44 34678889999764 36899898876654
Q ss_pred --cCCCCe--ecCCCceEEEECCEEEEccccc-ccC
Q psy16200 151 --NEKGEW--VEDEEQRIKLKANYIISAFGST-LLD 181 (183)
Q Consensus 151 --~~~~~~--~~~~g~~~~i~~D~Vi~a~G~~-p~~ 181 (183)
+++|++ ...+|+..+++||+||+|+|+. ||+
T Consensus 382 ~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~ 417 (485)
T TIGR01317 382 KKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ 417 (485)
T ss_pred ccCCCCCccceecCCceEEEECCEEEEccCcCCCcc
Confidence 456654 3457778899999999999996 765
No 21
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.82 E-value=1.7e-18 Score=143.84 Aligned_cols=166 Identities=26% Similarity=0.379 Sum_probs=114.6
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCChhHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~~g~e~A~~ 87 (183)
..||.||||||++.|+.|++| | .+.++++++.+++...... ..++. +.. ..+. .+++|+|||+|++|+|+|..
T Consensus 117 ~~~d~lviAtGs~~~~~~~ip-g-~~~~~v~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~g~~vvViG~G~~g~e~A~~ 190 (352)
T PRK12770 117 KKYDAVLIATGTWKSRKLGIP-G-EDLPGVYSALEYLFRIRAA-KLGYL--PWE-KVPPVEGKKVVVVGAGLTAVDAALE 190 (352)
T ss_pred hhCCEEEEEeCCCCCCcCCCC-C-ccccCceeHHHHHHHhhhc-ccccc--ccc-cccccCCCEEEEECCCHHHHHHHHH
Confidence 469999999999557788899 5 5778899887766543210 00000 000 0111 24679999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecC---CC--CeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNE---KG--EWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~---~~--~~~~~~g~ 162 (183)
|.+.|+++|++++|++....+.....+.++.++||++++++.+.++..+ +++..+++....+++ .+ ++...+++
T Consensus 191 l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
T PRK12770 191 AVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDESGRPRPVPIPGS 269 (352)
T ss_pred HHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecC-CcEeEEEEEEEEecCcCcccCcCceecCCC
Confidence 9999985699999876432333345566788899999999999998753 556666665432211 11 11123456
Q ss_pred eEEEECCEEEEcccccccC
Q psy16200 163 RIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~ 181 (183)
..+++||+||+++|++|++
T Consensus 270 ~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 270 EFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred eEEEECCEEEECcccCCCc
Confidence 6789999999999999986
No 22
>PRK06370 mercuric reductase; Validated
Probab=99.80 E-value=2.4e-18 Score=147.61 Aligned_cols=138 Identities=22% Similarity=0.301 Sum_probs=103.6
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+ .|+.|++| | .+..+++++.+++.. ...+++|+|||||++|+|+|..|
T Consensus 132 ~~~d~lViATGs-~p~~p~i~-G-~~~~~~~~~~~~~~~------------------~~~~~~vvVIGgG~~g~E~A~~l 190 (463)
T PRK06370 132 LRAKRIFINTGA-RAAIPPIP-G-LDEVGYLTNETIFSL------------------DELPEHLVIIGGGYIGLEFAQMF 190 (463)
T ss_pred EEeCEEEEcCCC-CCCCCCCC-C-CCcCceEcchHhhCc------------------cccCCEEEEECCCHHHHHHHHHH
Confidence 469999999999 49999999 5 565677776655421 23468899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
+++|. +|+++++.+.. ++..+.++ ..+.+.||++++++.+.++..+++.+. +++. .++..
T Consensus 191 ~~~G~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~-v~~~------------~~~~~ 255 (463)
T PRK06370 191 RRFGS-EVTVIERGPRL-LPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIA-VGLD------------CNGGA 255 (463)
T ss_pred HHcCC-eEEEEEcCCCC-CcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEEE------------eCCCc
Confidence 99997 79999998754 44433322 345678999999999999976433332 3332 12234
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 256 ~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 256 PEITGSHILVAVGRVPNTD 274 (463)
T ss_pred eEEEeCEEEECcCCCcCCC
Confidence 5799999999999999986
No 23
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.79 E-value=1.7e-18 Score=147.62 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=103.3
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||+||||||+. |+.|++| |+.+.++++++.+++.. ...+++|+|||||++|+|+|..
T Consensus 116 ~~~~d~vViATGs~-~~~p~i~-G~~~~~~v~~~~~~~~~------------------~~~~~~vvIIGgG~~g~e~A~~ 175 (438)
T PRK07251 116 ELTAETIVINTGAV-SNVLPIP-GLADSKHVYDSTGIQSL------------------ETLPERLGIIGGGNIGLEFAGL 175 (438)
T ss_pred EEEcCEEEEeCCCC-CCCCCCC-CcCCCCcEEchHHHhcc------------------hhcCCeEEEECCCHHHHHHHHH
Confidence 35799999999995 8889999 64456778887765532 2345789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|+++|. +|++++|++.. ++..++++ +.+.+.||+++++..+.++..+++.+. +. .++
T Consensus 176 l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~---v~------------~~g- 237 (438)
T PRK07251 176 YNKLGS-KVTVLDAASTI-LPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVL---VV------------TED- 237 (438)
T ss_pred HHHcCC-eEEEEecCCcc-CCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEE---EE------------ECC-
Confidence 999997 69999998754 44443333 235678999999999999875433332 21 122
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 238 -~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 238 -ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred -eEEEcCEEEEeeCCCCCcc
Confidence 3689999999999999975
No 24
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.78 E-value=5.7e-18 Score=145.29 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=102.7
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+ .|+.|++| | .+..+++++.+++.. ...+++|+|||||++|+|+|..|
T Consensus 127 ~~~~~lIiATGs-~p~~p~i~-G-~~~~~~~~~~~~~~~------------------~~~~~~vvIIGgG~~g~E~A~~l 185 (463)
T TIGR02053 127 RGAKRFLIATGA-RPAIPPIP-G-LKEAGYLTSEEALAL------------------DRIPESLAVIGGGAIGVELAQAF 185 (463)
T ss_pred EEeCEEEEcCCC-CCCCCCCC-C-cccCceECchhhhCc------------------ccCCCeEEEECCCHHHHHHHHHH
Confidence 368999999999 48889999 5 455567766655421 22357899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
+++|. +|++++++++. ++..++++ ..+.+.||++++++.+.++..+++.+. +++. .++..
T Consensus 186 ~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~-v~~~------------~~~~~ 250 (463)
T TIGR02053 186 ARLGS-EVTILQRSDRL-LPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKI-ITVE------------KPGGQ 250 (463)
T ss_pred HHcCC-cEEEEEcCCcC-CCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEE-EEEE------------eCCCc
Confidence 99997 69999998764 55443332 235678999999999999875433322 3332 12334
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 251 ~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 251 GEVEADELLVATGRRPNTD 269 (463)
T ss_pred eEEEeCEEEEeECCCcCCC
Confidence 6799999999999999986
No 25
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.78 E-value=7.2e-18 Score=143.84 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=102.0
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||++ |+.|++| |+.+.++++++.+++.. ...+++|+|||||++|+|+|..|
T Consensus 118 ~~~d~lviATGs~-p~~p~i~-G~~~~~~v~~~~~~~~~------------------~~~~~~v~ViGgG~~g~E~A~~l 177 (441)
T PRK08010 118 IHGEKIFINTGAQ-TVVPPIP-GITTTPGVYDSTGLLNL------------------KELPGHLGILGGGYIGVEFASMF 177 (441)
T ss_pred EEeCEEEEcCCCc-CCCCCCC-CccCCCCEEChhHhhcc------------------cccCCeEEEECCCHHHHHHHHHH
Confidence 4699999999995 8889999 64456778876655421 23457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|++++|++.. ++..++++ ..+.+.||+++++..+.++..+++.+. ++. .++
T Consensus 178 ~~~g~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~-v~~-------------~~g-- 239 (441)
T PRK08010 178 ANFGS-KVTILEAASLF-LPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQ-VHS-------------EHA-- 239 (441)
T ss_pred HHCCC-eEEEEecCCCC-CCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEE-------------cCC--
Confidence 99996 79999997654 55444332 345678999999999999976444332 211 112
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
++++|.|++|+|++||++
T Consensus 240 -~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 240 -QLAVDALLIASGRQPATA 257 (441)
T ss_pred -eEEeCEEEEeecCCcCCC
Confidence 488999999999999975
No 26
>PRK07846 mycothione reductase; Reviewed
Probab=99.77 E-value=9e-18 Score=143.79 Aligned_cols=135 Identities=19% Similarity=0.281 Sum_probs=101.0
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+ .|+.|++| | .+...++++.+++.. ...+++|+|||||++|+|+|..|
T Consensus 127 ~~~d~lViATGs-~p~~p~i~-g-~~~~~~~~~~~~~~l------------------~~~~~~vvIIGgG~iG~E~A~~l 185 (451)
T PRK07846 127 ITADQVVIAAGS-RPVIPPVI-A-DSGVRYHTSDTIMRL------------------PELPESLVIVGGGFIAAEFAHVF 185 (451)
T ss_pred EEeCEEEEcCCC-CCCCCCCC-C-cCCccEEchHHHhhh------------------hhcCCeEEEECCCHHHHHHHHHH
Confidence 469999999999 58889999 5 454556666665432 23457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHH----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI 164 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~ 164 (183)
+++|. +|++++|+++. ++..+.++. .+.+.+++++++..+.++..+++.+. +++ .++ .
T Consensus 186 ~~~G~-~Vtli~~~~~l-l~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~-v~~-------------~~g--~ 247 (451)
T PRK07846 186 SALGV-RVTVVNRSGRL-LRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVT-LRL-------------DDG--S 247 (451)
T ss_pred HHcCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEE-EEE-------------CCC--c
Confidence 99997 79999998764 454444432 33467899999999999875444332 332 123 3
Q ss_pred EEECCEEEEcccccccCC
Q psy16200 165 KLKANYIISAFGSTLLDN 182 (183)
Q Consensus 165 ~i~~D~Vi~a~G~~p~~~ 182 (183)
+++||.|++|+|++||++
T Consensus 248 ~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 248 TVEADVLLVATGRVPNGD 265 (451)
T ss_pred EeecCEEEEEECCccCcc
Confidence 699999999999999985
No 27
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.77 E-value=1.1e-17 Score=143.33 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=98.5
Q ss_pred CCCCEEEEccCCCCCccc-CCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVI-PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 9 ~~~davviATGa~~p~~l-~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..||+||||||+. |+.| ++| | .+. .+++.+++. ....+++|+|||||++|+|+|..
T Consensus 128 ~~~d~vIiAtGs~-p~~p~~i~-g-~~~--~~~~~~~~~------------------~~~~~~~vvIIGgG~iG~E~A~~ 184 (450)
T TIGR01421 128 YTAPHILIATGGK-PSFPENIP-G-AEL--GTDSDGFFA------------------LEELPKRVVIVGAGYIAVELAGV 184 (450)
T ss_pred EEeCEEEEecCCC-CCCCCCCC-C-Cce--eEcHHHhhC------------------ccccCCeEEEECCCHHHHHHHHH
Confidence 4699999999995 8877 788 5 332 234444432 12346789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|+++|. +|++++|+++. ++..+.++ ..+.++||++++++.+.++..+++....+++ .++
T Consensus 185 l~~~g~-~Vtli~~~~~i-l~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~-------------~~g- 248 (450)
T TIGR01421 185 LHGLGS-ETHLVIRHERV-LRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF-------------EDG- 248 (450)
T ss_pred HHHcCC-cEEEEecCCCC-CcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE-------------CCC-
Confidence 999997 69999998764 45544333 3456789999999999999753332112333 122
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+..++||.||+|+|++||++
T Consensus 249 ~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 249 KSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cEEEEcCEEEEeeCCCcCcc
Confidence 24799999999999999985
No 28
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.77 E-value=1.1e-17 Score=143.93 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=99.7
Q ss_pred CCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..||++|||||+. |+.+| ++ + +.++++++.+.+.. ...+++|+|||||++|+|+|..
T Consensus 135 ~~~d~lViATGs~-p~~~p~~~-~--~~~~v~~~~~~~~~------------------~~~~~~vvIiGgG~iG~E~A~~ 192 (471)
T PRK06467 135 IEFDNAIIAAGSR-PIQLPFIP-H--DDPRIWDSTDALEL------------------KEVPKRLLVMGGGIIGLEMGTV 192 (471)
T ss_pred EEcCEEEEeCCCC-CCCCCCCC-C--CCCcEEChHHhhcc------------------ccCCCeEEEECCCHHHHHHHHH
Confidence 4699999999995 76555 44 3 34567776665531 2345789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|.++|. +|+++++.++. ++..+.++. .+.++ +.++++..+.++..+++.+. +++.. .+++
T Consensus 193 l~~~G~-~Vtlv~~~~~i-l~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~-v~~~~-----------~~~~ 257 (471)
T PRK06467 193 YHRLGS-EVDVVEMFDQV-IPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIY-VTMEG-----------KKAP 257 (471)
T ss_pred HHHcCC-CEEEEecCCCC-CCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEE-EEEEe-----------CCCc
Confidence 999997 69999998764 565544432 33455 99999999988875444443 43321 1233
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
..++++|.||+|+|++||++
T Consensus 258 ~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 258 AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred ceEEEeCEEEEeecccccCC
Confidence 46799999999999999985
No 29
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.77 E-value=1.8e-17 Score=142.19 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+. |+.+|++ + .+...++++.+.+. ....+++++|||||++|+|+|..|
T Consensus 131 ~~~d~lviATGs~-p~~~p~~-~-~~~~~v~~~~~~~~------------------~~~~~~~vvIIGgG~iG~E~A~~l 189 (458)
T PRK06912 131 VDAEQFIIAAGSE-PTELPFA-P-FDGKWIINSKHAMS------------------LPSIPSSLLIVGGGVIGCEFASIY 189 (458)
T ss_pred EECCEEEEeCCCC-CCCCCCC-C-CCCCeEEcchHHhC------------------ccccCCcEEEECCCHHHHHHHHHH
Confidence 4699999999995 8878888 4 45556776655442 133567899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|++++++++. ++..++++ +.+.+.||++++++.+.++..++..+ .+. .+++.
T Consensus 190 ~~~g~-~Vtli~~~~~l-l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v---~~~------------~~g~~ 252 (458)
T PRK06912 190 SRLGT-KVTIVEMAPQL-LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQA---LFE------------YEGSI 252 (458)
T ss_pred HHcCC-eEEEEecCCCc-CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEE---EEE------------ECCce
Confidence 99997 69999998754 55544333 24567899999999999886533322 231 13444
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 253 ~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 253 QEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEeCEEEEecCCccCCC
Confidence 5799999999999999975
No 30
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.77 E-value=2.4e-17 Score=141.71 Aligned_cols=138 Identities=19% Similarity=0.214 Sum_probs=98.9
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||++|||||++ |+ ++| | .+.. .++++.+++. ....+++|+|||||++|+|+|.
T Consensus 135 ~~~d~lVIATGs~-p~--~ip-g-~~~~~~~~~~~~~~~~------------------~~~~~~~vvIIGgG~ig~E~A~ 191 (466)
T PRK06115 135 LEAKDIVIATGSE-PT--PLP-G-VTIDNQRIIDSTGALS------------------LPEVPKHLVVIGAGVIGLELGS 191 (466)
T ss_pred EEeCEEEEeCCCC-CC--CCC-C-CCCCCCeEECHHHHhC------------------CccCCCeEEEECCCHHHHHHHH
Confidence 4699999999994 64 466 4 3333 3555554432 1235688999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
.+.++|. +|+++++.++. ++..+.++ +.+.+.||++++++.+.++..+++.+. +++... .++
T Consensus 192 ~l~~~G~-~Vtlie~~~~i-l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~~----------~~g 258 (466)
T PRK06115 192 VWRRLGA-QVTVVEYLDRI-CPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVS-LTLEPA----------AGG 258 (466)
T ss_pred HHHHcCC-eEEEEeCCCCC-CCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEE-EEEEEc----------CCC
Confidence 9999996 79999988754 55443332 345678999999999999975434432 333210 134
Q ss_pred ceEEEECCEEEEcccccccCC
Q psy16200 162 QRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+..++++|.||+|+|++||++
T Consensus 259 ~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 259 AAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred ceeEEEeCEEEEccCCccccc
Confidence 456799999999999999975
No 31
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.77 E-value=1.5e-17 Score=142.60 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=103.2
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||+||||||+ .|+.|+++ + .+.++++++.+++.. ...+++|+|||||++|+|+|..
T Consensus 135 ~~~~d~lviATGs-~p~~p~~~-~-~~~~~v~~~~~~~~~------------------~~~~~~v~IiGgG~~g~E~A~~ 193 (461)
T PRK05249 135 TLTADKIVIATGS-RPYRPPDV-D-FDHPRIYDSDSILSL------------------DHLPRSLIIYGAGVIGCEYASI 193 (461)
T ss_pred EEEcCEEEEcCCC-CCCCCCCC-C-CCCCeEEcHHHhhch------------------hhcCCeEEEECCCHHHHHHHHH
Confidence 3579999999998 48888887 4 456778877766532 2346889999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|+++|. +|+++++++.. ++..+.++ ..+.+.||++++++.+.++..+++.+. +++ .+++
T Consensus 194 l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~-v~~-------------~~g~ 257 (461)
T PRK05249 194 FAALGV-KVTLINTRDRL-LSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVI-VHL-------------KSGK 257 (461)
T ss_pred HHHcCC-eEEEEecCCCc-CCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEE-EEE-------------CCCC
Confidence 999997 79999998764 55544332 345678999999999999875444332 222 1233
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+++||.||+|+|++||++
T Consensus 258 --~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 258 --KIKADCLLYANGRTGNTD 275 (461)
T ss_pred --EEEeCEEEEeecCCcccc
Confidence 689999999999999975
No 32
>PRK10262 thioredoxin reductase; Provisional
Probab=99.76 E-value=1.3e-17 Score=136.76 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=100.8
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA 85 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A 85 (183)
...||+||||||++ |+.|++| |...+ .++++. .++.. ....+++|+|||+|++|+|+|
T Consensus 103 ~~~~d~vilAtG~~-~~~~~i~-g~~~~~~~~v~~~-~~~~~-----------------~~~~g~~vvVvGgG~~g~e~A 162 (321)
T PRK10262 103 EYTCDALIIATGAS-ARYLGLP-SEEAFKGRGVSAC-ATCDG-----------------FFYRNQKVAVIGGGNTAVEEA 162 (321)
T ss_pred EEEECEEEECCCCC-CCCCCCC-CHHHcCCCcEEEe-ecCCH-----------------HHcCCCEEEEECCCHHHHHHH
Confidence 34699999999995 8888999 53222 233321 11111 123457799999999999999
Q ss_pred HHHHHcCCceEEEEEeecCCcCCCCHH----HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 86 TSALRCGANKVLVVFRKGCTNIRAVPE----EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~----~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
..|++.+. +|++++|++. ++.... ..+.+.+.||++++++.+.++..+++.++++++... ...+
T Consensus 163 ~~l~~~~~-~Vtlv~~~~~--~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~---------~~~~ 230 (321)
T PRK10262 163 LYLSNIAS-EVHLIHRRDG--FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDT---------QNSD 230 (321)
T ss_pred HHHHhhCC-EEEEEEECCc--cCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEc---------CCCC
Confidence 99999985 7999999764 222221 122345778999999999999865556766766421 0123
Q ss_pred ceEEEECCEEEEcccccccCC
Q psy16200 162 QRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+..++++|+||+++|++||++
T Consensus 231 ~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 231 NIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred eEEEEECCEEEEEeCCccChh
Confidence 456899999999999999974
No 33
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.76 E-value=2.5e-17 Score=142.17 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=98.5
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+ .|+.|++| |..+ ..+++.+++.. ...+++++|||||++|+|+|..|
T Consensus 142 ~~~d~lVIATGs-~p~~p~ip-G~~~--~~~~~~~~~~~------------------~~~~~~vvIIGgG~iG~E~A~~l 199 (484)
T TIGR01438 142 YSAERFLIATGE-RPRYPGIP-GAKE--LCITSDDLFSL------------------PYCPGKTLVVGASYVALECAGFL 199 (484)
T ss_pred EEeCEEEEecCC-CCCCCCCC-Cccc--eeecHHHhhcc------------------cccCCCEEEECCCHHHHHHHHHH
Confidence 469999999999 58889999 5322 23455544421 23457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
+++|. +|++++|. . .++..+.++ ..+.+.||+++++..+.++...++.+. +++.. .+..
T Consensus 200 ~~~G~-~Vtli~~~-~-~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~------------~~~~ 263 (484)
T TIGR01438 200 AGIGL-DVTVMVRS-I-LLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVK-VTFTD------------STNG 263 (484)
T ss_pred HHhCC-cEEEEEec-c-cccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEec------------CCcc
Confidence 99997 69999974 3 355554443 245678999999999888875434332 33321 1113
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 264 ~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 264 IEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred eEEEeCEEEEEecCCcCCC
Confidence 4799999999999999985
No 34
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.75 E-value=2.5e-17 Score=142.15 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=98.6
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||++|||||+. |+.|++| | .+ .++++.+++. ....+++|+|||||++|+|+|..
T Consensus 149 ~~~~d~lIIATGs~-p~~p~i~-G-~~--~~~~~~~~~~------------------~~~~~~~vvIIGgG~iG~E~A~~ 205 (486)
T TIGR01423 149 RLQAEHILLATGSW-PQMLGIP-G-IE--HCISSNEAFY------------------LDEPPRRVLTVGGGFISVEFAGI 205 (486)
T ss_pred EEECCEEEEecCCC-CCCCCCC-C-hh--heechhhhhc------------------cccCCCeEEEECCCHHHHHHHHH
Confidence 45799999999995 8888999 5 33 2455554432 12345789999999999999988
Q ss_pred HHHc---CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200 88 ALRC---GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED 159 (183)
Q Consensus 88 l~~~---G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~ 159 (183)
+..+ |. +|+|+++.++. ++..++++ ..+.++||+++++..+.++..+++....+++ .
T Consensus 206 ~~~l~~~G~-~Vtli~~~~~i-l~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~-------------~ 270 (486)
T TIGR01423 206 FNAYKPRGG-KVTLCYRNNMI-LRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF-------------E 270 (486)
T ss_pred HHHhccCCC-eEEEEecCCcc-ccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE-------------c
Confidence 7665 86 79999988764 45544433 3457789999999999998753333222333 1
Q ss_pred CCceEEEECCEEEEcccccccCC
Q psy16200 160 EEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 160 ~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+++ ++++|.||+|+|++||++
T Consensus 271 ~g~--~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 271 SGK--TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CCC--EEEcCEEEEeeCCCcCcc
Confidence 232 699999999999999975
No 35
>KOG0399|consensus
Probab=99.75 E-value=9.2e-18 Score=150.94 Aligned_cols=172 Identities=21% Similarity=0.243 Sum_probs=122.1
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCCh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGD 79 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~ 79 (183)
++++.|.++ +||||+|+||..||.+|+| | .+++||+++++||....... +.+.. +. .... .+|+|+|||||+
T Consensus 1862 vs~d~l~~~-~daiv~a~gst~prdlpv~-g-rd~kgv~fame~l~~ntk~l--ld~~~-d~-~~~~~~gkkvivigggd 1934 (2142)
T KOG0399|consen 1862 VSLDELKKE-NDAIVLATGSTTPRDLPVP-G-RDLKGVHFAMEFLEKNTKSL--LDSVL-DG-NYISAKGKKVIVIGGGD 1934 (2142)
T ss_pred ccHHHHhhc-cCeEEEEeCCCCCcCCCCC-C-ccccccHHHHHHHHHhHHhh--hcccc-cc-ceeccCCCeEEEECCCC
Confidence 467888887 9999999999999999999 5 89999999999998764321 00000 11 1222 456799999999
Q ss_pred hHHHHHHHHHHcCCceEEEEEeecCC--------cCCCCHH----HH--HHH-HHcCcEEEeCCc-ceEEEc-cCCcEEE
Q psy16200 80 TAFDCATSALRCGANKVLVVFRKGCT--------NIRAVPE----EV--QLA-WEEKCEFLPFMS-PVQVDV-KDNKIAG 142 (183)
Q Consensus 80 ~g~e~A~~l~~~G~~~V~lv~r~~~~--------~~~~~~~----~~--~~~-~~~gv~~~~~~~-~~~i~~-~~~~v~~ 142 (183)
+|.||.-+-.|+|++.|.-++--++. .+|..+. ++ .++ ..-|-..++-.. .+++.+ +++.|++
T Consensus 1935 tg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~g 2014 (2142)
T KOG0399|consen 1935 TGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTG 2014 (2142)
T ss_pred ccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceee
Confidence 99999999999999888877643221 1111111 01 111 223444443333 345665 5678999
Q ss_pred EEEEEeee--cCCCCee--cCCCceEEEECCEEEEcccccc
Q psy16200 143 MQFNRTEQ--NEKGEWV--EDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 143 v~~~~~~~--~~~~~~~--~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
++..+++| +.+|+|. +.+++++.++||.||+|+||.-
T Consensus 2015 l~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~g 2055 (2142)
T KOG0399|consen 2015 LETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVG 2055 (2142)
T ss_pred EEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccC
Confidence 99999998 6679994 5788899999999999999863
No 36
>PLN02507 glutathione reductase
Probab=99.75 E-value=3.5e-17 Score=141.76 Aligned_cols=133 Identities=24% Similarity=0.219 Sum_probs=98.4
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
+.||++|||||+ .|+.|++| | .+. .+++.+.+.. ...+++|+|||||++|+|+|..|
T Consensus 166 ~~~d~LIIATGs-~p~~p~ip-G-~~~--~~~~~~~~~l------------------~~~~k~vvVIGgG~ig~E~A~~l 222 (499)
T PLN02507 166 YTAKHILIATGS-RAQRPNIP-G-KEL--AITSDEALSL------------------EELPKRAVVLGGGYIAVEFASIW 222 (499)
T ss_pred EEcCEEEEecCC-CCCCCCCC-C-ccc--eechHHhhhh------------------hhcCCeEEEECCcHHHHHHHHHH
Confidence 468999999999 48888899 5 332 3444444321 23467899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|++++|.++. ++..+.++. .+.+.||++++++.+.++..+++.+. +++ .+|
T Consensus 223 ~~~G~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~-v~~-------------~~g-- 284 (499)
T PLN02507 223 RGMGA-TVDLFFRKELP-LRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIK-VIT-------------DHG-- 284 (499)
T ss_pred HHcCC-eEEEEEecCCc-CcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEE-EEE-------------CCC--
Confidence 99996 79999998654 454444332 45678999999999999975444432 222 123
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.|++|+|++||++
T Consensus 285 ~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 285 EEFVADVVLFATGRAPNTK 303 (499)
T ss_pred cEEEcCEEEEeecCCCCCC
Confidence 3699999999999999985
No 37
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.75 E-value=5.7e-17 Score=139.50 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=98.6
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||++|||||+. |+.+|.. . .+...++++.+.+. ....+++|+|||||++|+|+|..
T Consensus 140 ~~~~d~lViATGs~-p~~~p~~-~-~~~~~~~~~~~~~~------------------~~~~~~~vvIIGgG~~G~E~A~~ 198 (472)
T PRK05976 140 MIIPENLLIATGSR-PVELPGL-P-FDGEYVISSDEALS------------------LETLPKSLVIVGGGVIGLEWASM 198 (472)
T ss_pred EEEcCEEEEeCCCC-CCCCCCC-C-CCCceEEcchHhhC------------------ccccCCEEEEECCCHHHHHHHHH
Confidence 34699999999994 7654433 1 22334555554432 12345789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
|+++|. +|++++|.+.. ++..+.++ ..+.+.||++++++.+.++.. +++++..+.. .+|
T Consensus 199 l~~~g~-~Vtli~~~~~i-l~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~-------------~~g 263 (472)
T PRK05976 199 LADFGV-EVTVVEAADRI-LPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAE-------------HNG 263 (472)
T ss_pred HHHcCC-eEEEEEecCcc-CCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEE-------------eCC
Confidence 999996 69999998754 55544333 345678999999999999864 1344431221 245
Q ss_pred ceEEEECCEEEEcccccccCC
Q psy16200 162 QRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+..++++|.||+|+|++||++
T Consensus 264 ~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 264 EEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred ceEEEEeCEEEEeeCCccCCC
Confidence 556899999999999999975
No 38
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.75 E-value=3.7e-17 Score=140.53 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=100.5
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||+||||||+. |+.||++ + .+...+++..+++.. ...+++++|||||++|+|+|..
T Consensus 137 ~~~~d~lViATGs~-p~~~p~~-~-~~~~~v~~~~~~~~~------------------~~~~~~vvVIGgG~ig~E~A~~ 195 (466)
T PRK07845 137 TLDADVVLIATGAS-PRILPTA-E-PDGERILTWRQLYDL------------------DELPEHLIVVGSGVTGAEFASA 195 (466)
T ss_pred EEecCEEEEcCCCC-CCCCCCC-C-CCCceEEeehhhhcc------------------cccCCeEEEECCCHHHHHHHHH
Confidence 35799999999994 8777766 3 444567765554421 2345789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|++.|. +|++++++++. ++..+.++ ..+.++||+++++..+.++..+++.+. +++ .+|
T Consensus 196 l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~-------------~~g- 258 (466)
T PRK07845 196 YTELGV-KVTLVSSRDRV-LPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVV-VTL-------------TDG- 258 (466)
T ss_pred HHHcCC-eEEEEEcCCcC-CCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEE-------------CCC-
Confidence 999996 79999987754 55544332 345678999999999999875444443 332 123
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 259 -~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 259 -RTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred -cEEEecEEEEeecCCcCCC
Confidence 3689999999999999985
No 39
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.75 E-value=5.4e-17 Score=139.43 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=98.3
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCcc-CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTE-EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~-~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..||++|||||+. |+.+ | | .+ ...+++..+.+. ....+++|+|||||++|+|+|..
T Consensus 134 ~~~d~lViATGs~-p~~~--p-g-~~~~~~v~~~~~~~~------------------~~~~~~~vvVIGgG~ig~E~A~~ 190 (466)
T PRK07818 134 VTFDNAIIATGSS-TRLL--P-G-TSLSENVVTYEEQIL------------------SRELPKSIVIAGAGAIGMEFAYV 190 (466)
T ss_pred EEcCEEEEeCCCC-CCCC--C-C-CCCCCcEEchHHHhc------------------cccCCCeEEEECCcHHHHHHHHH
Confidence 4699999999995 7653 5 4 33 234555443221 12245789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|+++|. +|+++++.++. ++..+.++ +.+.+.||++++++.+.++..+++.+. +++.. .+|+
T Consensus 191 l~~~G~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-----------~~g~ 256 (466)
T PRK07818 191 LKNYGV-DVTIVEFLDRA-LPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVT-VTVSK-----------KDGK 256 (466)
T ss_pred HHHcCC-eEEEEecCCCc-CCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEE-EEEEe-----------cCCC
Confidence 999997 69999988754 55544333 345678999999999999975434332 33320 1344
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
..++++|.||+|+|++||++
T Consensus 257 ~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 257 AQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred eEEEEeCEEEECcCcccCCC
Confidence 56899999999999999975
No 40
>PTZ00058 glutathione reductase; Provisional
Probab=99.75 E-value=4.9e-17 Score=142.28 Aligned_cols=133 Identities=15% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+ .|+.|++| | .+ .++++.+++.. .. +++|+|||||++|+|+|..|
T Consensus 201 i~ad~lVIATGS-~P~~P~Ip-G-~~--~v~ts~~~~~l------------------~~-pk~VvIIGgG~iGlE~A~~l 256 (561)
T PTZ00058 201 IEGKNILIAVGN-KPIFPDVK-G-KE--FTISSDDFFKI------------------KE-AKRIGIAGSGYIAVELINVV 256 (561)
T ss_pred EECCEEEEecCC-CCCCCCCC-C-ce--eEEEHHHHhhc------------------cC-CCEEEEECCcHHHHHHHHHH
Confidence 479999999999 48888999 5 33 36666655431 22 67899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCc
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
.++|. +|++++++++. ++..++++ ..+.+.||+++++..+.++..+++ .+. +.+ .+.
T Consensus 257 ~~~G~-~Vtli~~~~~i-l~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~--------------~~~ 319 (561)
T PTZ00058 257 NRLGA-ESYIFARGNRL-LRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYL--------------SDG 319 (561)
T ss_pred HHcCC-cEEEEEecccc-cccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEE--------------CCC
Confidence 99997 69999998754 55544433 245678999999999999975322 232 211 122
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
..++++|.|++|+|++||++
T Consensus 320 ~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 320 RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred CEEEECCEEEECcCCCCCcc
Confidence 35799999999999999975
No 41
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.74 E-value=7.3e-17 Score=138.97 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=99.6
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+. |+.+|.+ + .+...++++.+.+. ....+++|+|||||++|+|+|..|
T Consensus 144 ~~~d~lViATGs~-p~~~p~~-~-~~~~~~~~~~~~~~------------------~~~~~~~vvVvGgG~~g~E~A~~l 202 (475)
T PRK06327 144 ITAKHVIIATGSE-PRHLPGV-P-FDNKIILDNTGALN------------------FTEVPKKLAVIGAGVIGLELGSVW 202 (475)
T ss_pred EEeCEEEEeCCCC-CCCCCCC-C-CCCceEECcHHHhc------------------ccccCCeEEEECCCHHHHHHHHHH
Confidence 4699999999994 7655433 1 23345665544332 123457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.+.|. +|+++++++.. ++..+.++ ..+.++||++++++.+.++..+++.+. +++.. .+|++
T Consensus 203 ~~~g~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~-----------~~g~~ 268 (475)
T PRK06327 203 RRLGA-EVTILEALPAF-LAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVS-VAYTD-----------ADGEA 268 (475)
T ss_pred HHcCC-eEEEEeCCCcc-CCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEE-EEEEe-----------CCCce
Confidence 99996 79999998754 44433332 345678999999999999976444443 43321 23455
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.|++|+|++||++
T Consensus 269 ~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 269 QTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred eEEEcCEEEEccCCccCCC
Confidence 6899999999999999975
No 42
>KOG0404|consensus
Probab=99.74 E-value=9e-18 Score=128.98 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=110.4
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcce-EEEEcCChhHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSA 88 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-VvViGgG~~g~e~A~~l 88 (183)
..|+||+|||+. .+++.+| | +. ++- |+... ...|+.|++.. +.+.+| .+|||||++|||-|.+|
T Consensus 112 ~~~avI~atGAs-AkRl~~p-g-~g-e~~-----fWqrG-----iSaCAVCDGaa-pifrnk~laVIGGGDsA~EEA~fL 176 (322)
T KOG0404|consen 112 TADAVILATGAS-AKRLHLP-G-EG-EGE-----FWQRG-----ISACAVCDGAA-PIFRNKPLAVIGGGDSAMEEALFL 176 (322)
T ss_pred eeeeEEEecccc-eeeeecC-C-CC-cch-----HHhcc-----cchhhcccCcc-hhhcCCeeEEEcCcHHHHHHHHHH
Confidence 469999999995 8889999 4 42 121 22211 13588888743 445566 99999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK 167 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~ 167 (183)
.+.+. +|+|++|++. +.++....+++ ...+|++++++...+..+++..+.+++++++ .+|...+++
T Consensus 177 tkyas-kVyii~Rrd~--fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~----------~tge~~dl~ 243 (322)
T KOG0404|consen 177 TKYAS-KVYIIHRRDH--FRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNV----------KTGEETDLP 243 (322)
T ss_pred Hhhcc-EEEEEEEhhh--hhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEec----------ccCcccccc
Confidence 99975 7999999964 55554444444 4567999999999988876566777888764 467788999
Q ss_pred CCEEEEcccccccCC
Q psy16200 168 ANYIISAFGSTLLDN 182 (183)
Q Consensus 168 ~D~Vi~a~G~~p~~~ 182 (183)
++-++.++|..|++.
T Consensus 244 v~GlFf~IGH~Pat~ 258 (322)
T KOG0404|consen 244 VSGLFFAIGHSPATK 258 (322)
T ss_pred cceeEEEecCCchhh
Confidence 999999999999873
No 43
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.74 E-value=8.7e-17 Score=142.72 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=102.5
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+. |+.|+++ + .+..+|+++.+.+.. ...+++|+|||||++|+|+|..|
T Consensus 273 i~ad~lIIATGS~-P~~P~~~-~-~~~~~V~ts~d~~~l------------------~~lpk~VvIVGgG~iGvE~A~~l 331 (659)
T PTZ00153 273 FKVKNIIIATGST-PNIPDNI-E-VDQKSVFTSDTAVKL------------------EGLQNYMGIVGMGIIGLEFMDIY 331 (659)
T ss_pred EECCEEEEcCCCC-CCCCCCC-C-CCCCcEEehHHhhhh------------------hhcCCceEEECCCHHHHHHHHHH
Confidence 4799999999994 8877766 4 455678887766542 23467899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHH----H-H-HHcCcEEEeCCcceEEEccCC-c-EEEEEEEEeeecC-CCCeecC
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQ----L-A-WEEKCEFLPFMSPVQVDVKDN-K-IAGMQFNRTEQNE-KGEWVED 159 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~----~-~-~~~gv~~~~~~~~~~i~~~~~-~-v~~v~~~~~~~~~-~~~~~~~ 159 (183)
.++|. +|+++++.++. ++..+.++. + + .+.||+++++..+.++..+++ . ++ +++.....++ ++.. ..
T Consensus 332 ~~~G~-eVTLIe~~~~l-l~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~-v~~~~~~~~~~~~~~-~~ 407 (659)
T PTZ00153 332 TALGS-EVVSFEYSPQL-LPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI-IGHSERQTGESDGPK-KN 407 (659)
T ss_pred HhCCC-eEEEEeccCcc-cccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE-EEEeccccccccccc-cc
Confidence 99996 79999998764 555444332 2 2 357899999999999975332 1 32 3221100000 0000 00
Q ss_pred CCceEEEECCEEEEcccccccCC
Q psy16200 160 EEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 160 ~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
..+.+++++|.||+|+|++||++
T Consensus 408 ~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 408 MNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred cccceEEEcCEEEEEECcccCCc
Confidence 01224799999999999999986
No 44
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.74 E-value=1e-16 Score=137.43 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=98.4
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA 85 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A 85 (183)
...||++|||||+. |+.| | | .+.. .+++..+.+. ....+++|+|||||++|+|+|
T Consensus 132 ~~~~d~lViAtGs~-p~~~--p-g-~~~~~~~v~~~~~~~~------------------~~~~~~~vvVvGgG~~g~E~A 188 (462)
T PRK06416 132 TYTAKNIILATGSR-PREL--P-G-IEIDGRVIWTSDEALN------------------LDEVPKSLVVIGGGYIGVEFA 188 (462)
T ss_pred EEEeCEEEEeCCCC-CCCC--C-C-CCCCCCeEEcchHhhC------------------ccccCCeEEEECCCHHHHHHH
Confidence 34799999999995 7543 4 3 2322 4655554432 123457899999999999999
Q ss_pred HHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200 86 TSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE 160 (183)
Q Consensus 86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~ 160 (183)
..|.++|. +|++++|++.. ++..+.++ ..+.+.||++++++.+.++..+++.+. +++. ..
T Consensus 189 ~~l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~------------~g 253 (462)
T PRK06416 189 SAYASLGA-EVTIVEALPRI-LPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVT-VTLE------------DG 253 (462)
T ss_pred HHHHHcCC-eEEEEEcCCCc-CCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEE------------eC
Confidence 99999997 69999998764 55543332 235678999999999999976444443 3331 12
Q ss_pred CceEEEECCEEEEcccccccCC
Q psy16200 161 EQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 161 g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
++..++++|.||+|+|++||++
T Consensus 254 g~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 254 GKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeeEEEEeCEEEEeeCCccCCC
Confidence 3446799999999999999975
No 45
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.7e-17 Score=131.32 Aligned_cols=136 Identities=23% Similarity=0.270 Sum_probs=105.6
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..++||||||+. ++.|.+| +..++. +|+ ||..|++ ...+++|+|||||++|+|.|.+
T Consensus 103 ~ak~vIiAtG~~-~~~~~~~-~e~e~~g~gv~----------------yc~~cdg---~~~~k~v~ViGgG~sAve~Al~ 161 (305)
T COG0492 103 EAKAVIIATGAG-ARKLGVP-GEEEFEGKGVS----------------YCATCDG---FFKGKDVVVIGGGDSAVEEALY 161 (305)
T ss_pred EEeEEEECcCCc-ccCCCCC-cchhhcCCceE----------------EeeecCc---cccCCeEEEEcCCHHHHHHHHH
Confidence 468999999994 8888888 422222 232 5666774 3345679999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHc-CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 166 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i 166 (183)
|.+.+. +|++++|++. +.+.+..++++.+. ++++++++.+.++.+++ +.++++++. .++...+
T Consensus 162 L~~~a~-~Vtlv~r~~~--~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~-----------~~~~~~~ 225 (305)
T COG0492 162 LSKIAK-KVTLVHRRDE--FRAEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV-----------KGEEKEL 225 (305)
T ss_pred HHHhcC-eEEEEecCcc--cCcCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec-----------CCceEEE
Confidence 999974 7999999964 55566666667665 89999999999998744 777777642 1667799
Q ss_pred ECCEEEEcccccccCC
Q psy16200 167 KANYIISAFGSTLLDN 182 (183)
Q Consensus 167 ~~D~Vi~a~G~~p~~~ 182 (183)
++|.|++++|..|+++
T Consensus 226 ~~~gvf~~iG~~p~~~ 241 (305)
T COG0492 226 PVDGVFIAIGHLPNTE 241 (305)
T ss_pred EeceEEEecCCCCchH
Confidence 9999999999999864
No 46
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.73 E-value=9.5e-17 Score=148.55 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=108.8
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||+||||||+. +++|++| | .+.++|+++.......+.+ ....+++|+|||+|++|+++|..
T Consensus 272 ~i~a~~VILATGa~-~r~~pip-G-~~~pgV~~~~~~~~~l~~~-------------~~~~gk~VvViG~G~~g~e~A~~ 335 (985)
T TIGR01372 272 RIRAKRVVLATGAH-ERPLVFA-N-NDRPGVMLAGAARTYLNRY-------------GVAPGKRIVVATNNDSAYRAAAD 335 (985)
T ss_pred EEEcCEEEEcCCCC-CcCCCCC-C-CCCCCcEEchHHHHHHHhh-------------CcCCCCeEEEECCCHHHHHHHHH
Confidence 45799999999994 8999999 5 7889999876554332210 12245779999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK 167 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~ 167 (183)
|++.|.+.|+++++++.. .......+.+.||++++++.+.++.+ ++.+.++++.. .+++.++++
T Consensus 336 L~~~G~~vV~vv~~~~~~----~~~l~~~L~~~GV~i~~~~~v~~i~g-~~~v~~V~l~~-----------~~g~~~~i~ 399 (985)
T TIGR01372 336 LLAAGIAVVAIIDARADV----SPEARAEARELGIEVLTGHVVAATEG-GKRVSGVAVAR-----------NGGAGQRLE 399 (985)
T ss_pred HHHcCCceEEEEccCcch----hHHHHHHHHHcCCEEEcCCeEEEEec-CCcEEEEEEEe-----------cCCceEEEE
Confidence 999997678998765321 22344567788999999999999975 45676676642 134556899
Q ss_pred CCEEEEcccccccCC
Q psy16200 168 ANYIISAFGSTLLDN 182 (183)
Q Consensus 168 ~D~Vi~a~G~~p~~~ 182 (183)
||.|+++.|++||++
T Consensus 400 ~D~V~va~G~~Pnt~ 414 (985)
T TIGR01372 400 ADALAVSGGWTPVVH 414 (985)
T ss_pred CCEEEEcCCcCchhH
Confidence 999999999999863
No 47
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.73 E-value=1.4e-16 Score=136.44 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCCCEEEEccCCCCCcccCCC-CCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIF-QGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~-gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..||++|||||+ .|+.+++| + .+...++++.+.+. ....+++|+|||||++|+|+|..
T Consensus 130 ~~~d~lVlAtG~-~p~~~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~e~A~~ 188 (461)
T TIGR01350 130 LTAKNIIIATGS-RPRSLPGPFD--FDGEVVITSTGALN------------------LKEVPESLVIIGGGVIGIEFASI 188 (461)
T ss_pred EEeCEEEEcCCC-CCCCCCCCCC--CCCceEEcchHHhc------------------cccCCCeEEEECCCHHHHHHHHH
Confidence 469999999998 48877775 2 23334666555432 12345789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
|.++|. +|+++++.+.. ++..+.++ +.+.+.||++++++.+.++..+++.+. ++. .+|+
T Consensus 189 l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~-------------~~g~ 252 (461)
T TIGR01350 189 FASLGS-KVTVIEMLDRI-LPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YEN-------------KGGE 252 (461)
T ss_pred HHHcCC-cEEEEEcCCCC-CCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEE-------------eCCc
Confidence 999997 69999998754 55543332 345678999999999999876445443 322 1333
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
..++++|.||+|+|+.||++
T Consensus 253 ~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 253 TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCEEEEecCCcccCC
Confidence 45799999999999999976
No 48
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.72 E-value=1.6e-16 Score=133.88 Aligned_cols=137 Identities=19% Similarity=0.240 Sum_probs=97.3
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceeh---hhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTS---KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA 85 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A 85 (183)
..||++|||||+. |+.++++ + ...+++++. .++..... ....+++|+|||||++|+|+|
T Consensus 99 ~~yd~LViATGs~-~~~~p~~-~-~~~~~v~~~~~~~da~~l~~---------------~~~~~~~vvViGgG~ig~E~A 160 (396)
T PRK09754 99 WHWDQLFIATGAA-ARPLPLL-D-ALGERCFTLRHAGDAARLRE---------------VLQPERSVVIVGAGTIGLELA 160 (396)
T ss_pred EEcCEEEEccCCC-CCCCCCC-C-cCCCCEEecCCHHHHHHHHH---------------HhhcCCeEEEECCCHHHHHHH
Confidence 4699999999995 8888887 3 455677763 23322111 112356799999999999999
Q ss_pred HHHHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200 86 TSALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED 159 (183)
Q Consensus 86 ~~l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~ 159 (183)
..|.++|. +|+++++.+.. ++. .+++ ...+.+.||+++++..+.++.. ++.+. +++ .
T Consensus 161 ~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~-v~l-------------~ 223 (396)
T PRK09754 161 ASATQRRC-KVTVIELAATV-MGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVE-LTL-------------Q 223 (396)
T ss_pred HHHHHcCC-eEEEEecCCcc-hhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEE-EEE-------------C
Confidence 99999997 79999987654 332 2222 2345678999999999998874 33332 332 2
Q ss_pred CCceEEEECCEEEEcccccccCC
Q psy16200 160 EEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 160 ~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+|+ +++||.||+|+|++||++
T Consensus 224 ~g~--~i~aD~Vv~a~G~~pn~~ 244 (396)
T PRK09754 224 SGE--TLQADVVIYGIGISANDQ 244 (396)
T ss_pred CCC--EEECCEEEECCCCChhhH
Confidence 333 689999999999999863
No 49
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.72 E-value=1.3e-16 Score=136.61 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=97.0
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+. |+.|+++ + .+...++++.+++.. ...+++++|||||++|+|+|..|
T Consensus 130 ~~~d~lIiATGs~-p~~p~~~-~-~~~~~~~~~~~~~~l------------------~~~~k~vvVIGgG~ig~E~A~~l 188 (452)
T TIGR03452 130 ITGDQIVIAAGSR-PYIPPAI-A-DSGVRYHTNEDIMRL------------------PELPESLVIVGGGYIAAEFAHVF 188 (452)
T ss_pred EEeCEEEEEECCC-CCCCCCC-C-CCCCEEEcHHHHHhh------------------hhcCCcEEEECCCHHHHHHHHHH
Confidence 4699999999995 8777654 2 222235555555432 23467899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHH----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI 164 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~ 164 (183)
.++|. +|+++++.+.. ++..++++. .+.+.+|+++++..+.++..+++.+. +++ .+| .
T Consensus 189 ~~~G~-~Vtli~~~~~l-l~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~-v~~-------------~~g--~ 250 (452)
T TIGR03452 189 SALGT-RVTIVNRSTKL-LRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVT-LTL-------------DDG--S 250 (452)
T ss_pred HhCCC-cEEEEEccCcc-ccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEE-EEE-------------cCC--C
Confidence 99997 69999997653 444443332 33457899999999999875444432 322 123 2
Q ss_pred EEECCEEEEcccccccCC
Q psy16200 165 KLKANYIISAFGSTLLDN 182 (183)
Q Consensus 165 ~i~~D~Vi~a~G~~p~~~ 182 (183)
++++|.|++|+|++||++
T Consensus 251 ~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGD 268 (452)
T ss_pred EEEcCEEEEeeccCcCCC
Confidence 699999999999999975
No 50
>PRK06116 glutathione reductase; Validated
Probab=99.72 E-value=1.9e-16 Score=135.47 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=98.6
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+. |+.|++| | .+ .++++.+++. ....+++|+|||||++|+|+|..|
T Consensus 130 ~~~d~lViATGs~-p~~p~i~-g-~~--~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l 186 (450)
T PRK06116 130 YTADHILIATGGR-PSIPDIP-G-AE--YGITSDGFFA------------------LEELPKRVAVVGAGYIAVEFAGVL 186 (450)
T ss_pred EEeCEEEEecCCC-CCCCCCC-C-cc--eeEchhHhhC------------------ccccCCeEEEECCCHHHHHHHHHH
Confidence 4699999999984 8888899 5 33 3455554432 123467899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCCc
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
+++|. +|++++|++.. ++..+.++ ..+.+.||++++++.+.++..+++. +. +++ .+|
T Consensus 187 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~-v~~-------------~~g- 249 (450)
T PRK06116 187 NGLGS-ETHLFVRGDAP-LRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLT-LTL-------------EDG- 249 (450)
T ss_pred HHcCC-eEEEEecCCCC-ccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEE-EEE-------------cCC-
Confidence 99996 79999997653 44443332 3467889999999999999754332 32 332 123
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.+++||.||+|+|++||++
T Consensus 250 -~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 250 -ETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred -cEEEeCEEEEeeCCCcCCC
Confidence 3689999999999999986
No 51
>PRK14727 putative mercuric reductase; Provisional
Probab=99.72 E-value=1.2e-16 Score=137.80 Aligned_cols=133 Identities=20% Similarity=0.214 Sum_probs=96.3
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+ .|+.|++| | .+...+++..+.+.. ...+++|+|||||++|+|+|..|
T Consensus 149 ~~~d~lViATGs-~p~~p~i~-G-~~~~~~~~~~~~l~~------------------~~~~k~vvVIGgG~iG~E~A~~l 207 (479)
T PRK14727 149 LAADRCLIATGS-TPTIPPIP-G-LMDTPYWTSTEALFS------------------DELPASLTVIGSSVVAAEIAQAY 207 (479)
T ss_pred EEeCEEEEecCC-CCCCCCCC-C-cCccceecchHHhcc------------------ccCCCeEEEECCCHHHHHHHHHH
Confidence 469999999999 59989999 5 333334544443321 22457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|+++++. . .++..++++ ..+.+.||+++++..+.++..+++.+. ++. ..+
T Consensus 208 ~~~G~-~Vtlv~~~-~-~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~-v~~-------------~~g-- 268 (479)
T PRK14727 208 ARLGS-RVTILARS-T-LLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV-LTT-------------GHG-- 268 (479)
T ss_pred HHcCC-EEEEEEcC-C-CCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEE-EEE-------------cCC--
Confidence 99996 79999875 3 345444433 245678999999999988875434332 211 112
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
++++|.||+|+|+.||++
T Consensus 269 -~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 269 -ELRAEKLLISTGRHANTH 286 (479)
T ss_pred -eEEeCEEEEccCCCCCcc
Confidence 489999999999999975
No 52
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.72 E-value=9.4e-17 Score=146.16 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=100.3
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhh--HHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTF--LPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||++|||||+. |+.|++| | .+.++++...++ +..... ....+++++|||||++|+|+|.
T Consensus 100 i~yD~LVIATGs~-p~~p~ip-G-~~~~~v~~~rt~~d~~~l~~--------------~~~~~k~vvVIGgG~iGlE~A~ 162 (847)
T PRK14989 100 VFYDKLIMATGSY-PWIPPIK-G-SETQDCFVYRTIEDLNAIEA--------------CARRSKRGAVVGGGLLGLEAAG 162 (847)
T ss_pred EECCEEEECCCCC-cCCCCCC-C-CCCCCeEEECCHHHHHHHHH--------------HHhcCCeEEEECCCHHHHHHHH
Confidence 4799999999995 8889999 5 566776532221 111111 1224577999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecC
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVED 159 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~ 159 (183)
.|.++|. +|+++++.+.. ++. .+++ .+.+.+.||+++++..+.++..++ +.+..+++ .
T Consensus 163 ~L~~~G~-~VtvVe~~~~l-l~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~-------------~ 227 (847)
T PRK14989 163 ALKNLGV-ETHVIEFAPML-MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF-------------A 227 (847)
T ss_pred HHHHcCC-eEEEEeccccc-hhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE-------------C
Confidence 9999997 69999987653 442 2222 234578899999999999997532 33333443 2
Q ss_pred CCceEEEECCEEEEcccccccCC
Q psy16200 160 EEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 160 ~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+|+ ++++|.||+|+|++||++
T Consensus 228 dG~--~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 228 DGS--ELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred CCC--EEEcCEEEECCCcccCch
Confidence 333 699999999999999974
No 53
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.72 E-value=1.1e-16 Score=145.02 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=101.4
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhH--HHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFL--PRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||++|||||+. |+.|++| | .+.++++....+- ..... ....+++|+|||||++|+|+|.
T Consensus 95 ~~yD~LVlATGs~-p~~p~ip-G-~~~~~v~~~rt~~d~~~i~~--------------~~~~~k~vvVVGgG~~GlE~A~ 157 (785)
T TIGR02374 95 LSYDKLILATGSY-PFILPIP-G-ADKKGVYVFRTIEDLDAIMA--------------MAQRFKKAAVIGGGLLGLEAAV 157 (785)
T ss_pred eeCCEEEECCCCC-cCCCCCC-C-CCCCCEEEeCCHHHHHHHHH--------------HhhcCCeEEEECCCHHHHHHHH
Confidence 4699999999994 8999999 5 6777876533221 11111 1123467999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE 160 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~ 160 (183)
.|.++|. +|+++++.+.. ++. .++. ...+.+.||+++++..+.++.. ++.+..+++ .+
T Consensus 158 ~L~~~G~-~Vtvv~~~~~l-l~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~-~~~~~~v~~-------------~d 221 (785)
T TIGR02374 158 GLQNLGM-DVSVIHHAPGL-MAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG-ATKADRIRF-------------KD 221 (785)
T ss_pred HHHhcCC-eEEEEccCCch-hhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc-CCceEEEEE-------------CC
Confidence 9999997 79999987654 432 2222 2345778999999999999875 344554554 23
Q ss_pred CceEEEECCEEEEcccccccCC
Q psy16200 161 EQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 161 g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
|+ ++++|.||+|+|++||++
T Consensus 222 G~--~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 222 GS--SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred CC--EEEcCEEEECCCCCcCcH
Confidence 43 699999999999999874
No 54
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.72 E-value=1.6e-16 Score=135.81 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=97.0
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+. |+.|++| | .+. .+++.+.+. ....+++|+|||||++|+|+|..+
T Consensus 129 ~~~d~lIiATGs~-p~~p~i~-G-~~~--~~~~~~~~~------------------l~~~~~~vvVIGgG~~g~E~A~~l 185 (446)
T TIGR01424 129 YTAKKILIAVGGR-PQKPNLP-G-HEL--GITSNEAFH------------------LPTLPKSILILGGGYIAVEFAGIW 185 (446)
T ss_pred EEcCEEEEecCCc-CCCCCCC-C-ccc--eechHHhhc------------------ccccCCeEEEECCcHHHHHHHHHH
Confidence 4699999999994 8888899 5 332 334433332 123567899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|+++++.+.. ++..+.++ ..+.+.||+++++..+.++..+++.+. +++ .++
T Consensus 186 ~~~G~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~-------------~~g-- 247 (446)
T TIGR01424 186 RGLGV-QVTLIYRGELI-LRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLK-VTL-------------SHG-- 247 (446)
T ss_pred HHcCC-eEEEEEeCCCC-CcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEE-EEE-------------cCC--
Confidence 99996 79999987653 44443332 235678999999999999875333332 322 122
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
.++++|.||+|+|++||++
T Consensus 248 ~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 248 EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred cEeecCEEEEeeCCCcCCC
Confidence 3689999999999999975
No 55
>PLN02546 glutathione reductase
Probab=99.71 E-value=2.7e-16 Score=137.63 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=97.4
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+ .|..|+|| |+ + .++++.+++.. ...+++|+|||||++|+|+|..|
T Consensus 215 ~~~D~LVIATGs-~p~~P~Ip-G~-~--~v~~~~~~l~~------------------~~~~k~V~VIGgG~iGvE~A~~L 271 (558)
T PLN02546 215 YTARNILIAVGG-RPFIPDIP-GI-E--HAIDSDAALDL------------------PSKPEKIAIVGGGYIALEFAGIF 271 (558)
T ss_pred EECCEEEEeCCC-CCCCCCCC-Ch-h--hccCHHHHHhc------------------cccCCeEEEECCCHHHHHHHHHH
Confidence 469999999999 48888899 53 3 35555554421 23457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
.+.|. +|+++++.+.. ++..++++ ..+.++||+++++..+.++..+ ++.+. ++. . .
T Consensus 272 ~~~g~-~Vtlv~~~~~i-l~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~-v~~-------------~--~ 333 (558)
T PLN02546 272 NGLKS-DVHVFIRQKKV-LRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLS-LKT-------------N--K 333 (558)
T ss_pred HhcCC-eEEEEEecccc-ccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEE-EEE-------------C--C
Confidence 99986 79999987653 55554443 3456789999999999998753 33232 221 1 1
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.....+|.||+|+|++||++
T Consensus 334 g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 334 GTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred eEEEecCEEEEeeccccCCC
Confidence 22445899999999999985
No 56
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.71 E-value=2.3e-16 Score=137.11 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=100.5
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||.+|+|||+. |+.+++| |..++ .+++.... |+ .....+++|+|||||++|+|+|.
T Consensus 310 i~~d~lIlAtGa~-~~~~~ip-G~~~~~~~~v~~~~~----------------~~--~~~~~~k~VvViGgG~~g~E~A~ 369 (515)
T TIGR03140 310 LKAKSVIVATGAR-WRKLGVP-GEKEYIGKGVAYCPH----------------CD--GPFFKGKDVAVIGGGNSGIEAAI 369 (515)
T ss_pred EEeCEEEECCCCC-cCCCCCC-CHHHcCCCeEEEeec----------------cC--hhhcCCCEEEEECCcHHHHHHHH
Confidence 4689999999995 8888899 42222 23332110 01 11224578999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~ 165 (183)
.|++.|. +|+++++.+. +.........+.+ +||++++++.+.++.+++++++++++.+. .+++.++
T Consensus 370 ~L~~~g~-~Vtli~~~~~--l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~----------~~~~~~~ 436 (515)
T TIGR03140 370 DLAGIVR-HVTVLEFADE--LKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDR----------NSGEEKQ 436 (515)
T ss_pred HHHhcCc-EEEEEEeCCc--CChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEEC----------CCCcEEE
Confidence 9999985 7999998754 2222222334444 69999999999999876567777776431 2345678
Q ss_pred EECCEEEEcccccccCC
Q psy16200 166 LKANYIISAFGSTLLDN 182 (183)
Q Consensus 166 i~~D~Vi~a~G~~p~~~ 182 (183)
++||.|++|+|++||++
T Consensus 437 i~~D~vi~a~G~~Pn~~ 453 (515)
T TIGR03140 437 LDLDGVFVQIGLVPNTE 453 (515)
T ss_pred EEcCEEEEEeCCcCCch
Confidence 99999999999999975
No 57
>PRK13748 putative mercuric reductase; Provisional
Probab=99.71 E-value=2e-16 Score=138.63 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=96.5
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||+||||||+ .|+.|++| |+ +...+++..+.+.. ...+++|+|||||++|+|+|..|
T Consensus 231 ~~~d~lviAtGs-~p~~p~i~-g~-~~~~~~~~~~~~~~------------------~~~~~~vvViGgG~ig~E~A~~l 289 (561)
T PRK13748 231 VAFDRCLIATGA-SPAVPPIP-GL-KETPYWTSTEALVS------------------DTIPERLAVIGSSVVALELAQAF 289 (561)
T ss_pred EEcCEEEEcCCC-CCCCCCCC-CC-CccceEccHHHhhc------------------ccCCCeEEEECCCHHHHHHHHHH
Confidence 469999999999 48888999 53 33334544443321 23457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|++++|.. .++..+.++ +.+.+.||+++++..+.++..+++.+. +.. ++.
T Consensus 290 ~~~g~-~Vtli~~~~--~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~-v~~--------------~~~- 350 (561)
T PRK13748 290 ARLGS-KVTILARST--LFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFV-LTT--------------GHG- 350 (561)
T ss_pred HHcCC-EEEEEecCc--cccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEE-EEe--------------cCC-
Confidence 99996 799999853 244443332 345678999999999998875444332 221 112
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
++++|.||+|+|++||++
T Consensus 351 -~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 351 -ELRADKLLVATGRAPNTR 368 (561)
T ss_pred -eEEeCEEEEccCCCcCCC
Confidence 589999999999999985
No 58
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.70 E-value=5e-16 Score=125.13 Aligned_cols=139 Identities=24% Similarity=0.223 Sum_probs=99.3
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||.+|+|||+. |+.+++| |...+ .+++.... .. .....+++|+|||+|++|+|+|.
T Consensus 99 ~~~d~liiAtG~~-~~~~~i~-g~~~~~~~~~~~~~~-~~-----------------~~~~~~~~v~ViG~G~~~~e~a~ 158 (300)
T TIGR01292 99 YTAKAVIIATGAS-ARKLGIP-GEDEFLGRGVSYCAT-CD-----------------GPFFKNKEVAVVGGGDSAIEEAL 158 (300)
T ss_pred EEeCEEEECCCCC-cccCCCC-ChhhcCCccEEEeee-cC-----------------hhhcCCCEEEEECCChHHHHHHH
Confidence 4699999999984 8888898 52221 22322111 10 01223467999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHc-CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~ 165 (183)
.|++.+. +|++++|++. +...+.....+.+. ||++++++.+.++..+ +++..+++.+. .+++.++
T Consensus 159 ~l~~~~~-~V~~v~~~~~--~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~----------~~g~~~~ 224 (300)
T TIGR01292 159 YLTRIAK-KVTLVHRRDK--FRAEKILLDRLRKNPNIEFLWNSTVKEIVGD-NKVEGVKIKNT----------VTGEEEE 224 (300)
T ss_pred HHHhhcC-EEEEEEeCcc--cCcCHHHHHHHHhCCCeEEEeccEEEEEEcc-CcEEEEEEEec----------CCCceEE
Confidence 9999875 7999999764 33444445566676 9999999999999753 45555555321 2456678
Q ss_pred EECCEEEEcccccccC
Q psy16200 166 LKANYIISAFGSTLLD 181 (183)
Q Consensus 166 i~~D~Vi~a~G~~p~~ 181 (183)
+++|+||+|+|++|+.
T Consensus 225 i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 225 LKVDGVFIAIGHEPNT 240 (300)
T ss_pred EEccEEEEeeCCCCCh
Confidence 9999999999999986
No 59
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.70 E-value=3.7e-16 Score=135.90 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=101.8
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||.||+|||+ .|+.+++| |..++ .++++... |+ .....+++|+|||||++|+|+|.
T Consensus 309 i~a~~vViAtG~-~~r~~~ip-G~~~~~~~~v~~~~~----------------~~--~~~~~gk~VvVVGgG~~g~e~A~ 368 (517)
T PRK15317 309 LKAKTVILATGA-RWRNMNVP-GEDEYRNKGVAYCPH----------------CD--GPLFKGKRVAVIGGGNSGVEAAI 368 (517)
T ss_pred EEcCEEEECCCC-CcCCCCCC-CHHHhcCceEEEeec----------------cC--chhcCCCEEEEECCCHHHHHHHH
Confidence 358999999999 48888899 53333 23332210 01 11224567999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~ 165 (183)
.|+..+. +|+++++++. +.........+.+ .||++++++.+.++.+++++++++++.+. .++++.+
T Consensus 369 ~L~~~~~-~Vtlv~~~~~--l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~----------~~g~~~~ 435 (517)
T PRK15317 369 DLAGIVK-HVTVLEFAPE--LKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDR----------TTGEEHH 435 (517)
T ss_pred HHHhcCC-EEEEEEECcc--ccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEEC----------CCCcEEE
Confidence 9999975 8999998754 3333323333443 69999999999999876577877777531 2455678
Q ss_pred EECCEEEEcccccccCC
Q psy16200 166 LKANYIISAFGSTLLDN 182 (183)
Q Consensus 166 i~~D~Vi~a~G~~p~~~ 182 (183)
++||+|++++|++||++
T Consensus 436 i~~D~v~~~~G~~p~~~ 452 (517)
T PRK15317 436 LELEGVFVQIGLVPNTE 452 (517)
T ss_pred EEcCEEEEeECCccCch
Confidence 99999999999999874
No 60
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.70 E-value=3.8e-16 Score=135.30 Aligned_cols=134 Identities=19% Similarity=0.222 Sum_probs=96.3
Q ss_pred hCCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
...||+||||||+. |+.|+ +| | .+. ..+++.+++.. ...+++++|||||++|+|+|.
T Consensus 142 ~i~~d~lIIATGs~-p~~p~~i~-G-~~~-~~~~~~~~~~~------------------~~~~~~vvIIGgG~iG~E~A~ 199 (499)
T PTZ00052 142 TITAKYILIATGGR-PSIPEDVP-G-AKE-YSITSDDIFSL------------------SKDPGKTLIVGASYIGLETAG 199 (499)
T ss_pred EEECCEEEEecCCC-CCCCCCCC-C-ccc-eeecHHHHhhh------------------hcCCCeEEEECCCHHHHHHHH
Confidence 35799999999995 77664 88 5 332 23455555432 234578999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
.|+++|. +|++++++ .. ++..+.++ ..+.+.||+++++..+.++...++.+. +++ .+|
T Consensus 200 ~l~~~G~-~Vtli~~~-~~-l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~-v~~-------------~~g 262 (499)
T PTZ00052 200 FLNELGF-DVTVAVRS-IP-LRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIK-VLF-------------SDG 262 (499)
T ss_pred HHHHcCC-cEEEEEcC-cc-cccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEE-EEE-------------CCC
Confidence 9999997 69999874 32 45443332 345678999999999988875333332 333 123
Q ss_pred ceEEEECCEEEEcccccccCC
Q psy16200 162 QRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+ ++++|.||+|+|++||++
T Consensus 263 ~--~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 263 T--TELFDTVLYATGRKPDIK 281 (499)
T ss_pred C--EEEcCEEEEeeCCCCCcc
Confidence 3 579999999999999986
No 61
>PRK14694 putative mercuric reductase; Provisional
Probab=99.70 E-value=4.2e-16 Score=134.03 Aligned_cols=133 Identities=25% Similarity=0.322 Sum_probs=95.7
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||.+|||||+ .|+.|++| |+ +...++++.+.+. ....+++|+|||+|++|+|+|..|
T Consensus 139 ~~~d~lViATGs-~p~~p~i~-G~-~~~~~~~~~~~~~------------------l~~~~~~vvViG~G~~G~E~A~~l 197 (468)
T PRK14694 139 VHFDRAFIGTGA-RPAEPPVP-GL-AETPYLTSTSALE------------------LDHIPERLLVIGASVVALELAQAF 197 (468)
T ss_pred EECCEEEEeCCC-CCCCCCCC-CC-CCCceEcchhhhc------------------hhcCCCeEEEECCCHHHHHHHHHH
Confidence 469999999999 58989999 54 3333444433321 123457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
.++|. +|+++++. + .++..++++ +.+.+.||+++++..+.++..+++.+. ++. ++.
T Consensus 198 ~~~g~-~Vtlv~~~-~-~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~-v~~--------------~~~- 258 (468)
T PRK14694 198 ARLGS-RVTVLARS-R-VLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI-LET--------------NAG- 258 (468)
T ss_pred HHcCC-eEEEEECC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEE--------------CCC-
Confidence 99996 79999864 3 244443332 245678999999999998875433222 221 122
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
++++|.||+|+|++||++
T Consensus 259 -~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 259 -TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred -EEEeCEEEEccCCCCCcC
Confidence 599999999999999975
No 62
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.70 E-value=4.7e-16 Score=130.17 Aligned_cols=138 Identities=21% Similarity=0.192 Sum_probs=95.8
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+. |+.|++| | .+. +++..++....... .....+++|+|||||++|+|+|..|
T Consensus 98 ~~yd~LVlATG~~-~~~p~i~-G-~~~--v~~~~~~~~~~~~~------------~~~~~~~~vvViGgG~~g~e~A~~L 160 (377)
T PRK04965 98 WQYDKLVLATGAS-AFVPPIP-G-REL--MLTLNSQQEYRAAE------------TQLRDAQRVLVVGGGLIGTELAMDL 160 (377)
T ss_pred EeCCEEEECCCCC-CCCCCCC-C-Cce--EEEECCHHHHHHHH------------HHhhcCCeEEEECCCHHHHHHHHHH
Confidence 4699999999995 8888999 5 443 44433222111100 0112346799999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 89 LRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
.+.|. +|+++++++.. ++. .+.+ ...+.+.||+++++..+.++..+++.+. +++ .+|
T Consensus 161 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~-------------~~g- 223 (377)
T PRK04965 161 CRAGK-AVTLVDNAASL-LASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR-ATL-------------DSG- 223 (377)
T ss_pred HhcCC-eEEEEecCCcc-cchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEE-EEE-------------cCC-
Confidence 99986 79999998653 322 1221 2345778999999999999875433332 333 123
Q ss_pred eEEEECCEEEEcccccccC
Q psy16200 163 RIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~ 181 (183)
.+++||.||+|+|+.||+
T Consensus 224 -~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 224 -RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred -cEEECCEEEECcCCCcch
Confidence 369999999999999985
No 63
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.69 E-value=3.9e-16 Score=132.59 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=97.6
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChhHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~g~e~A~~l 88 (183)
.||++|||||+ .|+.+++| | .+.+++++..++........ .. ...+++|+|||||++|+|+|..|
T Consensus 91 ~yd~lIiATG~-~p~~~~i~-G-~~~~~v~~~~~~~~~~~~~~-----------~l~~~~~~~vvViGgG~~g~e~A~~l 156 (427)
T TIGR03385 91 SYDYLILSPGA-SPIVPNIE-G-INLDIVFTLRNLEDTDAIKQ-----------YIDKNKVENVVIIGGGYIGIEMAEAL 156 (427)
T ss_pred CCCEEEECCCC-CCCCCCCC-C-cCCCCEEEECCHHHHHHHHH-----------HHhhcCCCeEEEECCCHHHHHHHHHH
Confidence 49999999999 58888999 5 55567776544332111000 00 12347899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
++.|. +|+++++++....+..+.++ +.+.+.||+++++..+.++..+ +.+ +.+ .+|+
T Consensus 157 ~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~--v~~-------------~~g~- 218 (427)
T TIGR03385 157 RERGK-NVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE-ERV--KVF-------------TSGG- 218 (427)
T ss_pred HhCCC-cEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC-CCE--EEE-------------cCCC-
Confidence 99997 69999987653223332222 3456789999999999998753 333 222 1233
Q ss_pred EEEECCEEEEcccccccC
Q psy16200 164 IKLKANYIISAFGSTLLD 181 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~ 181 (183)
++++|.||+|+|++||+
T Consensus 219 -~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 219 -VYQADMVILATGIKPNS 235 (427)
T ss_pred -EEEeCEEEECCCccCCH
Confidence 68999999999999986
No 64
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.69 E-value=9e-16 Score=131.54 Aligned_cols=136 Identities=21% Similarity=0.201 Sum_probs=96.4
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCc--cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLT--EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~--~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
..||++|||||+. .|++| |.. ...++++..+.+. ....+++|+|||||++|+|+|.
T Consensus 129 ~~~d~lIiATGs~---~p~ip-g~~~~~~~~~~~~~~~~~------------------~~~~~k~v~VIGgG~~g~E~A~ 186 (460)
T PRK06292 129 IEAKNIVIATGSR---VPPIP-GVWLILGDRLLTSDDAFE------------------LDKLPKSLAVIGGGVIGLELGQ 186 (460)
T ss_pred EEeCEEEEeCCCC---CCCCC-CCcccCCCcEECchHHhC------------------ccccCCeEEEECCCHHHHHHHH
Confidence 4689999999984 45677 432 2334555444331 1235678999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
.|+++|. +|++++|+++. ++..+.++. .+.+. |+++++..+.++..+++ ..+++.. .++
T Consensus 187 ~l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~--~~v~~~~-----------~~~ 250 (460)
T PRK06292 187 ALSRLGV-KVTVFERGDRI-LPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD--EKVEELE-----------KGG 250 (460)
T ss_pred HHHHcCC-cEEEEecCCCc-CcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC--ceEEEEE-----------cCC
Confidence 9999997 69999998754 554444332 34566 99999999999975333 1233321 234
Q ss_pred ceEEEECCEEEEcccccccCC
Q psy16200 162 QRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+..++++|.|++|+|++||++
T Consensus 251 ~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 251 KTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred ceEEEEeCEEEEccCCccCCC
Confidence 556899999999999999986
No 65
>KOG1335|consensus
Probab=99.66 E-value=1.2e-15 Score=125.12 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=105.0
Q ss_pred CCEEEEccCCCCCcccCCCCCCc-cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200 11 YTAIFIGIGKPNANVIPIFQGLT-EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 89 (183)
Q Consensus 11 ~davviATGa~~p~~l~i~gg~~-~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~ 89 (183)
.+.+||||||.. +++| |+. |.+-|+++...|. +...|++.+|||+|++|+|++....
T Consensus 174 aKnIiiATGSeV---~~~P-GI~IDekkIVSStgALs------------------L~~vPk~~~viG~G~IGLE~gsV~~ 231 (506)
T KOG1335|consen 174 AKNIIIATGSEV---TPFP-GITIDEKKIVSSTGALS------------------LKEVPKKLTVIGAGYIGLEMGSVWS 231 (506)
T ss_pred eeeEEEEeCCcc---CCCC-CeEecCceEEecCCccc------------------hhhCcceEEEEcCceeeeehhhHHH
Confidence 578999999842 3566 432 5566777666553 3457899999999999999999999
Q ss_pred HcCCceEEEEEeecCCcCCCCHHHHHH-----HHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 90 RCGANKVLVVFRKGCTNIRAVPEEVQL-----AWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 90 ~~G~~~V~lv~r~~~~~~~~~~~~~~~-----~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
++|+ +||+|+--+.. ++..+.|+.. +..+|+.|++++.+....... +.|. |++... .+++.
T Consensus 232 rLGs-eVT~VEf~~~i-~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~a----------k~~k~ 298 (506)
T KOG1335|consen 232 RLGS-EVTVVEFLDQI-GGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENA----------KTGKK 298 (506)
T ss_pred hcCC-eEEEEEehhhh-ccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE-EEEEec----------CCCce
Confidence 9998 69999876553 5556666543 467899999999999887643 3554 555432 46678
Q ss_pred EEEECCEEEEcccccccCCC
Q psy16200 164 IKLKANYIISAFGSTLLDND 183 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~~ 183 (183)
.+++||.+++|+|++|.+++
T Consensus 299 ~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 299 ETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred eEEEeeEEEEEccCcccccC
Confidence 89999999999999998863
No 66
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.65 E-value=2.2e-15 Score=128.49 Aligned_cols=139 Identities=18% Similarity=0.222 Sum_probs=97.8
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChhHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~g~e~A~~l 88 (183)
.||++|||||+. |+.|++| | .+.+++++..++........ .. ...+++|+|||||++|+|+|..|
T Consensus 103 ~yd~lviAtG~~-~~~~~i~-g-~~~~~v~~~~~~~~~~~l~~-----------~l~~~~~~~vvVvGgG~~g~e~A~~l 168 (444)
T PRK09564 103 TYDKLMIATGAR-PIIPPIK-N-INLENVYTLKSMEDGLALKE-----------LLKDEEIKNIVIIGAGFIGLEAVEAA 168 (444)
T ss_pred cCCEEEECCCCC-CCCCCCC-C-cCCCCEEEECCHHHHHHHHH-----------HHhhcCCCEEEEECCCHHHHHHHHHH
Confidence 499999999994 8888899 5 56677876544332211100 00 12357899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 89 LRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
.+.|. +|+++++++.. ++ ..++++ +.+.+.||++++++.+.++.. ++.+..+.. ++.
T Consensus 169 ~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~--------------~~~ 231 (444)
T PRK09564 169 KHLGK-NVRIIQLEDRI-LPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG-EDKVEGVVT--------------DKG 231 (444)
T ss_pred HhcCC-cEEEEeCCccc-CchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEe--------------CCC
Confidence 99996 79999987653 33 223322 245678999999999999864 344432321 222
Q ss_pred eEEEECCEEEEcccccccC
Q psy16200 163 RIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~ 181 (183)
+++||.||+|+|+.||+
T Consensus 232 --~i~~d~vi~a~G~~p~~ 248 (444)
T PRK09564 232 --EYEADVVIVATGVKPNT 248 (444)
T ss_pred --EEEcCEEEECcCCCcCH
Confidence 58999999999999985
No 67
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.65 E-value=5e-15 Score=126.63 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=114.5
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCC---------CCCcc----CCCceehhhhHHHHhccccCCccCCCCCCCCCC
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIF---------QGLTE----EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI 67 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~---------gg~~~----~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (183)
+|.++|++ .||+||+|||+. +..+||+ || ++ ..|++.+.+|..+++.....-.|-..+. -..+
T Consensus 118 vt~eeL~~-~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GG-e~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~a-yL~p 193 (506)
T PTZ00188 118 LKMEELRN-HYNCVIFCCGAS-EVSIPIGQQDEDKAVSGG-ETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDN-YLNS 193 (506)
T ss_pred cCHHHHHh-cCCEEEEEcCCC-CCCCCcccccceeeeccc-cccccccCcEEehheEEEeecCCCCccccccccc-cccc
Confidence 57889987 699999999996 4444432 23 44 5699999999888765321100000010 0111
Q ss_pred --CcceEEEEcCChhHHHHHHHH--------------------HHcCCceEEEEEeecCCcCCCCHHH------------
Q psy16200 68 --LKGTVIVLGAGDTAFDCATSA--------------------LRCGANKVLVVFRKGCTNIRAVPEE------------ 113 (183)
Q Consensus 68 --~~~~VvViGgG~~g~e~A~~l--------------------~~~G~~~V~lv~r~~~~~~~~~~~~------------ 113 (183)
..++++|||.|++|+|+|+.| .+.+.++|+||.||+..+......|
T Consensus 194 ~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v 273 (506)
T PTZ00188 194 FENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKV 273 (506)
T ss_pred cCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeE
Confidence 224699999999999999974 4557789999999874322211110
Q ss_pred ------H---------------------------HHHHH-----------cCcEEEeCCcceEEEccCCcEEEEEEEEee
Q psy16200 114 ------V---------------------------QLAWE-----------EKCEFLPFMSPVQVDVKDNKIAGMQFNRTE 149 (183)
Q Consensus 114 ------~---------------------------~~~~~-----------~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~ 149 (183)
+ ....+ ..+.|++..+|.+|.+++++|+++++.+++
T Consensus 274 ~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~ 353 (506)
T PTZ00188 274 ILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNK 353 (506)
T ss_pred EEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEee
Confidence 0 00010 236788899999998644789999998765
Q ss_pred ecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200 150 QNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180 (183)
Q Consensus 150 ~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 180 (183)
+.. +.. ..+|+.++++||+|+-|+||+..
T Consensus 354 l~~-~~~-~~tg~~~~~~~~lV~rsiGY~g~ 382 (506)
T PTZ00188 354 NVP-MSF-SSFKENKVLVTPLVIFATGFKKS 382 (506)
T ss_pred ccc-Ccc-CCCCeeEEEEcCEEEEcccccCC
Confidence 522 221 34677889999999999999864
No 68
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.64 E-value=3.6e-15 Score=127.34 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=92.6
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
..||++|||||+. |+.|+++ .+++++..++......... -....+++|+|||||++|+|+|..|
T Consensus 104 ~~yd~lviAtGs~-~~~~~~~-----~~~~~~~~~~~~~~~l~~~----------l~~~~~~~vvViGgG~ig~E~A~~l 167 (438)
T PRK13512 104 ESYDKLILSPGAS-ANSLGFE-----SDITFTLRNLEDTDAIDQF----------IKANQVDKALVVGAGYISLEVLENL 167 (438)
T ss_pred eecCEEEECCCCC-CCCCCCC-----CCCeEEecCHHHHHHHHHH----------HhhcCCCEEEEECCCHHHHHHHHHH
Confidence 4799999999995 7766554 2345443322221110000 0012457899999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
+++|. +|++++++++. ++..+.++ +.+.+.||+++++..+.++.. .. +++ .+|+
T Consensus 168 ~~~g~-~Vtli~~~~~l-~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~~---v~~-------------~~g~- 226 (438)
T PRK13512 168 YERGL-HPTLIHRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEIDAING--NE---VTF-------------KSGK- 226 (438)
T ss_pred HhCCC-cEEEEeccccc-chhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--CE---EEE-------------CCCC-
Confidence 99997 69999998653 44433322 345678999999999998863 22 333 1232
Q ss_pred EEEECCEEEEcccccccCC
Q psy16200 164 IKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~ 182 (183)
+++||.|++|+|++||++
T Consensus 227 -~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 227 -VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred -EEEeCEEEECcCCCcChH
Confidence 589999999999999864
No 69
>KOG0405|consensus
Probab=99.64 E-value=1.1e-15 Score=124.07 Aligned_cols=132 Identities=20% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
+....++||||+ +|..|.|| | .++ ++ ++..|+. ++..|+|++|+|||++|+|+|-.+
T Consensus 152 Ytak~iLIAtGg-~p~~PnIp-G-~E~-gi-dSDgff~------------------Lee~Pkr~vvvGaGYIavE~Agi~ 208 (478)
T KOG0405|consen 152 YTAKHILIATGG-RPIIPNIP-G-AEL-GI-DSDGFFD------------------LEEQPKRVVVVGAGYIAVEFAGIF 208 (478)
T ss_pred EecceEEEEeCC-ccCCCCCC-c-hhh-cc-ccccccc------------------hhhcCceEEEEccceEEEEhhhHH
Confidence 345789999998 58888999 5 554 22 4455553 356889999999999999999999
Q ss_pred HHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCCc
Q psy16200 89 LRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
+.+|+ +++|+.|.... +...++.+. .+..+||++|.++.+.++...++. ...++. .+
T Consensus 209 ~gLgs-ethlfiR~~kv-LR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~--------------~~- 271 (478)
T KOG0405|consen 209 AGLGS-ETHLFIRQEKV-LRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITS--------------HG- 271 (478)
T ss_pred hhcCC-eeEEEEecchh-hcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEe--------------cc-
Confidence 99998 69999997653 555555543 457889999999999998764333 221221 22
Q ss_pred eEEE-ECCEEEEcccccccCC
Q psy16200 163 RIKL-KANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i-~~D~Vi~a~G~~p~~~ 182 (183)
++ .+|+|+.|+|+.||+-
T Consensus 272 --~i~~vd~llwAiGR~Pntk 290 (478)
T KOG0405|consen 272 --TIEDVDTLLWAIGRKPNTK 290 (478)
T ss_pred --ccccccEEEEEecCCCCcc
Confidence 34 4999999999999974
No 70
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.63 E-value=6.4e-15 Score=129.20 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=94.7
Q ss_pred CCCEEEEccCCCCCcccCCCCCCcc--CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTE--EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~--~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
.+|+||||||++ |+.|++| |..+ ..++++... |+ .....+++|+|||||++|+|+|..
T Consensus 102 ~a~~lVlATGa~-p~~~~ip-G~~~~~~~~v~~~~~----------------~~--~~~~~g~~VvVIGgG~~g~E~A~~ 161 (555)
T TIGR03143 102 KTLAVLIATGAS-PRKLGFP-GEEEFTGRGVAYCAT----------------CD--GEFFTGMDVFVIGGGFAAAEEAVF 161 (555)
T ss_pred EEeEEEECCCCc-cCCCCCC-CHHHhCCceEEEEee----------------cC--hhhcCCCEEEEECCCHHHHHHHHH
Confidence 478999999995 8889999 5222 123332111 01 012345789999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHHHHHH-HcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAW-EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 166 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~-~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i 166 (183)
|+++|. +|++++|++.. ........++. .+||++++++.+.++.+ ++.++.+.+... .+|+..++
T Consensus 162 L~~~g~-~Vtli~~~~~~--~~~~~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~~----------~~G~~~~~ 227 (555)
T TIGR03143 162 LTRYAS-KVTVIVREPDF--TCAKLIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVNN----------VTGEITEY 227 (555)
T ss_pred HHccCC-EEEEEEeCCcc--ccCHHHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEEC----------CCCCEEEE
Confidence 999986 79999997642 22333333443 45999999999999975 345554444321 23444444
Q ss_pred --ECCE----EEEcccccccCC
Q psy16200 167 --KANY----IISAFGSTLLDN 182 (183)
Q Consensus 167 --~~D~----Vi~a~G~~p~~~ 182 (183)
+||. ||+++|++||++
T Consensus 228 ~~~~D~~~~~Vi~a~G~~Pn~~ 249 (555)
T TIGR03143 228 KAPKDAGTFGVFVFVGYAPSSE 249 (555)
T ss_pred eccccccceEEEEEeCCCCChh
Confidence 4776 999999999974
No 71
>KOG1336|consensus
Probab=99.61 E-value=1e-14 Score=122.41 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=104.1
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 89 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~ 89 (183)
.|+.++||||+ .++.|++| | -+.+++.+-.+.-...... ......++|+++|+|++|+|+|..|.
T Consensus 169 kys~LilATGs-~~~~l~~p-G-~~~~nv~~ireieda~~l~------------~~~~~~~~vV~vG~G~ig~Evaa~l~ 233 (478)
T KOG1336|consen 169 KYSKLIIATGS-SAKTLDIP-G-VELKNVFYLREIEDANRLV------------AAIQLGGKVVCVGGGFIGMEVAAALV 233 (478)
T ss_pred ecceEEEeecC-ccccCCCC-C-ccccceeeeccHHHHHHHH------------HHhccCceEEEECchHHHHHHHHHHH
Confidence 68999999999 59999999 5 6788887644433222110 01223567999999999999999998
Q ss_pred HcCCceEEEEEeecCCcCCC-CHH----HH-HHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200 90 RCGANKVLVVFRKGCTNIRA-VPE----EV-QLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQ 162 (183)
Q Consensus 90 ~~G~~~V~lv~r~~~~~~~~-~~~----~~-~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~ 162 (183)
..+ ++||+|++.+.. ++. ... .+ .++++.||+|++++.+.++.+ .+++++.+.+. ++
T Consensus 234 ~~~-~~VT~V~~e~~~-~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~-------------dg- 297 (478)
T KOG1336|consen 234 SKA-KSVTVVFPEPWL-LPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK-------------DG- 297 (478)
T ss_pred hcC-ceEEEEccCccc-hhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec-------------cC-
Confidence 876 589999987653 442 222 22 245788999999999999986 34667655542 33
Q ss_pred eEEEECCEEEEcccccccCC
Q psy16200 163 RIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 163 ~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.+++||.|++.+|.+||+.
T Consensus 298 -~~l~adlvv~GiG~~p~t~ 316 (478)
T KOG1336|consen 298 -KTLEADLVVVGIGIKPNTS 316 (478)
T ss_pred -CEeccCeEEEeeccccccc
Confidence 4899999999999999985
No 72
>KOG4716|consensus
Probab=99.59 E-value=5.7e-15 Score=119.64 Aligned_cols=138 Identities=24% Similarity=0.322 Sum_probs=103.5
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 89 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~ 89 (183)
..+.+|||||. +||-|.|| | .- +.-+++.|++. ++..|+|-+|+|+|++|+|||-+|+
T Consensus 161 ta~~fvIatG~-RPrYp~Ip-G-~~-Ey~ITSDDlFs------------------l~~~PGkTLvVGa~YVaLECAgFL~ 218 (503)
T KOG4716|consen 161 TAENFVIATGL-RPRYPDIP-G-AK-EYGITSDDLFS------------------LPYEPGKTLVVGAGYVALECAGFLK 218 (503)
T ss_pred ecceEEEEecC-CCCCCCCC-C-ce-eeeeccccccc------------------ccCCCCceEEEccceeeeehhhhHh
Confidence 45789999998 59999999 5 22 23346677653 3567789999999999999999999
Q ss_pred HcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200 90 RCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQR 163 (183)
Q Consensus 90 ~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~ 163 (183)
-+|- .|++..|+ ..+...+++|. .+.+.||+|.....+.+++. +++++. +....+ .+++.
T Consensus 219 gfg~-~vtVmVRS--I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t----------~t~~~ 284 (503)
T KOG4716|consen 219 GFGY-DVTVMVRS--ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNT----------NTGEE 284 (503)
T ss_pred hcCC-CcEEEEEE--eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecc----------ccccc
Confidence 9997 69999997 44666666553 45789999999999998876 455543 434321 23333
Q ss_pred EEEECCEEEEcccccccCCC
Q psy16200 164 IKLKANYIISAFGSTLLDND 183 (183)
Q Consensus 164 ~~i~~D~Vi~a~G~~p~~~~ 183 (183)
.+-+.|+|++|+|+.+++.+
T Consensus 285 ~~~~ydTVl~AiGR~~~~~~ 304 (503)
T KOG4716|consen 285 GEEEYDTVLWAIGRKALTDD 304 (503)
T ss_pred ccchhhhhhhhhccccchhh
Confidence 44578999999999998753
No 73
>KOG1800|consensus
Probab=99.58 E-value=1.6e-14 Score=118.40 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=111.5
Q ss_pred CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
+++.+|++. ||+||+|+|+..+|.|.|| | +++.||+++..|..+++...... .. .+.....+|+|||-|++
T Consensus 100 vsl~eL~~~-ydavvLaYGa~~dR~L~IP-G-e~l~~V~Sarefv~Wyng~P~~~----~l--e~dls~~~vvIvG~GNV 170 (468)
T KOG1800|consen 100 VSLKELTDN-YDAVVLAYGADGDRRLDIP-G-EELSGVISAREFVGWYNGLPENQ----NL--EPDLSGRKVVIVGNGNV 170 (468)
T ss_pred ccHHHHhhc-ccEEEEEecCCCCcccCCC-C-cccccceehhhhhhhccCCCccc----cc--CcccccceEEEEccCch
Confidence 467788775 9999999999889999999 4 78999999999998876421100 00 11223456999999999
Q ss_pred HHHHHHHHHH---------------------cCCceEEEEEeecCCcCCCCHH---------------------------
Q psy16200 81 AFDCATSALR---------------------CGANKVLVVFRKGCTNIRAVPE--------------------------- 112 (183)
Q Consensus 81 g~e~A~~l~~---------------------~G~~~V~lv~r~~~~~~~~~~~--------------------------- 112 (183)
|+|+|+.|.. ...++|+|+.||+..+....-.
T Consensus 171 AlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~ 250 (468)
T KOG1800|consen 171 ALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDE 250 (468)
T ss_pred hhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCc
Confidence 9999998862 1347899999976422111100
Q ss_pred ----------HH-----HHHHH--------c-C---cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200 113 ----------EV-----QLAWE--------E-K---CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165 (183)
Q Consensus 113 ----------~~-----~~~~~--------~-g---v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~ 165 (183)
++ ..+.+ . + -.+.+...+.+|....+.+.++.++.+.+... ....+|+.++
T Consensus 251 ~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~--~~~~tg~~e~ 328 (468)
T KOG1800|consen 251 SETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGT--QAVPTGAFET 328 (468)
T ss_pred ccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeehhh--cccccCceEe
Confidence 00 01111 0 1 13445566667765434466666665444221 1235788899
Q ss_pred EECCEEEEccccccc
Q psy16200 166 LKANYIISAFGSTLL 180 (183)
Q Consensus 166 i~~D~Vi~a~G~~p~ 180 (183)
++|+.++.++||...
T Consensus 329 ~p~~l~i~sIGYks~ 343 (468)
T KOG1800|consen 329 LPCGLLIRSIGYKSV 343 (468)
T ss_pred eccceeEeeeeeccc
Confidence 999999999999754
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-14 Score=115.16 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=105.1
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
..+.||||||++ -|.+.+| |..++ +||- ||--|++ +..-+|+|+|||||++|+|+|.-
T Consensus 313 kaktvIlstGAr-WRn~nvP-GE~e~rnKGVa----------------yCPHCDG--PLF~gK~VAVIGGGNSGvEAAID 372 (520)
T COG3634 313 KARTVILATGAR-WRNMNVP-GEDEYRNKGVA----------------YCPHCDG--PLFKGKRVAVIGGGNSGVEAAID 372 (520)
T ss_pred ccceEEEecCcc-hhcCCCC-chHHHhhCCee----------------eCCCCCC--cccCCceEEEECCCcchHHHHHh
Confidence 468999999994 6889999 52332 2332 5666775 23345669999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 166 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i 166 (183)
|+-. .++||+++=.+ ++.+..-..+++ .-.+++++++...+++.+++++|++++++.. .+|+.+.+
T Consensus 373 LAGi-v~hVtllEF~~--eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr----------~sge~~~l 439 (520)
T COG3634 373 LAGI-VEHVTLLEFAP--ELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDR----------VSGEEHHL 439 (520)
T ss_pred HHhh-hheeeeeecch--hhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEec----------cCCceeEE
Confidence 9988 46999996432 133322122233 3467999999999999998889999998653 46788899
Q ss_pred ECCEEEEcccccccCC
Q psy16200 167 KANYIISAFGSTLLDN 182 (183)
Q Consensus 167 ~~D~Vi~a~G~~p~~~ 182 (183)
+.+-|++-+|..||++
T Consensus 440 ~LeGvFVqIGL~PNT~ 455 (520)
T COG3634 440 ELEGVFVQIGLLPNTE 455 (520)
T ss_pred EeeeeEEEEecccChh
Confidence 9999999999999986
No 75
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.54 E-value=1.8e-14 Score=126.22 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=102.9
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
...||.+|+|||| .|..+|+| | .+.++|+.-.++-...... ......++.+|||||..|+|+|..
T Consensus 99 ~~~YDkLilATGS-~pfi~PiP-G-~~~~~v~~~R~i~D~~am~------------~~ar~~~~avVIGGGLLGlEaA~~ 163 (793)
T COG1251 99 TVSYDKLIIATGS-YPFILPIP-G-SDLPGVFVYRTIDDVEAML------------DCARNKKKAVVIGGGLLGLEAARG 163 (793)
T ss_pred EeecceeEEecCc-cccccCCC-C-CCCCCeeEEecHHHHHHHH------------HHHhccCCcEEEccchhhhHHHHH
Confidence 3469999999999 59999999 5 8888876533332211110 011233458999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCC-H----HHH-HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAV-P----EEV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~-~----~~~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
|...|. +|++++..+.. |-+. + +.+ ..+.++|+.|+++....++.+ ++++.++++. +|
T Consensus 164 L~~~Gm-~~~Vvh~~~~l-MerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~-------------DG 227 (793)
T COG1251 164 LKDLGM-EVTVVHIAPTL-MERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFA-------------DG 227 (793)
T ss_pred HHhCCC-ceEEEeecchH-HHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeec-------------CC
Confidence 999998 69999987653 3222 1 112 245788999999888888875 5667777763 33
Q ss_pred ceEEEECCEEEEcccccccCC
Q psy16200 162 QRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
. .+++|.||+|+|.+||++
T Consensus 228 ~--~i~ad~VV~a~GIrPn~e 246 (793)
T COG1251 228 T--EIPADLVVMAVGIRPNDE 246 (793)
T ss_pred C--cccceeEEEecccccccH
Confidence 3 689999999999999975
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.48 E-value=2.3e-13 Score=116.93 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=83.7
Q ss_pred CCCCEEEEccCCC-CCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200 9 DGYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT 86 (183)
Q Consensus 9 ~~~davviATGa~-~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~ 86 (183)
+.||+||||||.. .|+.|++| |+.+++| ++++.+|-. ....-+++|+|||+|++|+|+|.
T Consensus 160 ~~~d~VIvAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~-----------------~~~~~gk~VvVVG~G~Sg~diA~ 221 (461)
T PLN02172 160 EIFDAVVVCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRV-----------------PDPFKNEVVVVIGNFASGADISR 221 (461)
T ss_pred EEcCEEEEeccCCCCCcCCCCC-CcccCCceEEEecccCC-----------------ccccCCCEEEEECCCcCHHHHHH
Confidence 3589999999942 58888999 6556666 233332211 01223466999999999999999
Q ss_pred HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200 87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 166 (183)
Q Consensus 87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i 166 (183)
.|++.+ ++|++++|++.. .. ...+......+..+..+..+.. ++. |++ .+|+ .+
T Consensus 222 ~L~~~a-~~V~l~~r~~~~-~~-----~~~~~~~~~~v~~~~~I~~~~~-~g~---V~f-------------~DG~--~~ 275 (461)
T PLN02172 222 DIAKVA-KEVHIASRASES-DT-----YEKLPVPQNNLWMHSEIDTAHE-DGS---IVF-------------KNGK--VV 275 (461)
T ss_pred HHHHhC-CeEEEEEeeccc-cc-----cccCcCCCCceEECCcccceec-CCe---EEE-------------CCCC--Cc
Confidence 999986 589999997532 11 0111112233444555555442 332 334 3454 46
Q ss_pred ECCEEEEcccccccCC
Q psy16200 167 KANYIISAFGSTLLDN 182 (183)
Q Consensus 167 ~~D~Vi~a~G~~p~~~ 182 (183)
++|.||+|+|+.|+.+
T Consensus 276 ~~D~Ii~~TGy~~~~p 291 (461)
T PLN02172 276 YADTIVHCTGYKYHFP 291 (461)
T ss_pred cCCEEEECCcCCcccc
Confidence 8999999999999754
No 77
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.47 E-value=5e-13 Score=113.73 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=90.7
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCcee------hhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYT------SKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+..||.+|||||+. |+.+++| |..+ ++++ +..+......+........+.. ......++|+|||||.+|
T Consensus 111 ~i~yD~LViAtGs~-~~~~~ip-G~~e--~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~vvVvGgG~~G 185 (424)
T PTZ00318 111 SVPYDKLVVAHGAR-PNTFNIP-GVEE--RAFFLKEVNHARGIRKRIVQCIERASLPTTSV-EERKRLLHFVVVGGGPTG 185 (424)
T ss_pred EecCCEEEECCCcc-cCCCCCC-CHHH--cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh-HHHhccCEEEEECCCHHH
Confidence 45799999999994 8888899 5332 2222 1111111111000000000000 000011379999999999
Q ss_pred HHHHHHHHHc--------------CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEE
Q psy16200 82 FDCATSALRC--------------GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAG 142 (183)
Q Consensus 82 ~e~A~~l~~~--------------G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~ 142 (183)
+|+|..|+.. +. +|++++++++. ++..++.+ +.+.+.||+++++..+.++.. +.
T Consensus 186 vE~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~l-l~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--- 258 (424)
T PTZ00318 186 VEFAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSEV-LGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE--- 258 (424)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccC-EEEEEcCCCcc-cccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE---
Confidence 9999988752 54 79999987654 44443332 346789999999999988863 22
Q ss_pred EEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 143 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 143 v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
+.+ .+|+ ++++|+||+++|.+||.
T Consensus 259 v~~-------------~~g~--~i~~d~vi~~~G~~~~~ 282 (424)
T PTZ00318 259 VVL-------------KDGE--VIPTGLVVWSTGVGPGP 282 (424)
T ss_pred EEE-------------CCCC--EEEccEEEEccCCCCcc
Confidence 223 2333 78999999999999973
No 78
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.44 E-value=3.3e-12 Score=106.28 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=87.5
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceeh---hhhHH---HHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTS---KTFLP---RVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA 81 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~---~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g 81 (183)
+..||.+|||||+. |+.+++| | . .++++.. .++.. ...... ....-.++|+|||||++|
T Consensus 93 ~~~yD~LviAtG~~-~~~~~i~-g-~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~vvVvG~G~~g 157 (364)
T TIGR03169 93 PLSYDVLSLDVGST-TPLSGVE-G-A-ADLAVPVKPIENFLARWEALLESA-----------DAPPGTKRLAVVGGGAAG 157 (364)
T ss_pred cccccEEEEccCCC-CCCCCCC-c-c-cccccccCCHHHHHHHHHHHHHHH-----------hcCCCCceEEEECCCHHH
Confidence 35799999999994 8888899 4 2 2333321 12221 111100 001123579999999999
Q ss_pred HHHHHHHHHc----CC-ceEEEEEeecCCcCCCCHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeec
Q psy16200 82 FDCATSALRC----GA-NKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQN 151 (183)
Q Consensus 82 ~e~A~~l~~~----G~-~~V~lv~r~~~~~~~~~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~ 151 (183)
+|+|..|++. |. .+|+++ +.+.. ++..+.. .+.+.+.||++++++.+.++.. +. +.+
T Consensus 158 ~E~A~~l~~~~~~~g~~~~V~li-~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~---v~~------ 224 (364)
T TIGR03169 158 VEIALALRRRLPKRGLRGQVTLI-AGASL-LPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--GA---LIL------ 224 (364)
T ss_pred HHHHHHHHHHHHhcCCCceEEEE-eCCcc-cccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--Ce---EEe------
Confidence 9999988753 32 269999 44332 3333222 2346788999999999888853 22 333
Q ss_pred CCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 152 EKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 152 ~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.+| .++++|.||+|+|.+|++
T Consensus 225 -------~~g--~~i~~D~vi~a~G~~p~~ 245 (364)
T TIGR03169 225 -------ADG--RTLPADAILWATGARAPP 245 (364)
T ss_pred -------CCC--CEEecCEEEEccCCChhh
Confidence 123 378999999999999974
No 79
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.43 E-value=1.2e-12 Score=109.94 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=95.1
Q ss_pred hhCCCCEEEEccCCCCCcccCCCCCCccCC-CceehhhhHH---HHhccc-cCCccCCCCCCCCCCC-c-ceEEEEcCCh
Q psy16200 7 RKDGYTAIFIGIGKPNANVIPIFQGLTEEM-GFYTSKTFLP---RVATSS-KKGLCGGCKKESLPIL-K-GTVIVLGAGD 79 (183)
Q Consensus 7 ~~~~~davviATGa~~p~~l~i~gg~~~~~-~V~~~~~~l~---~~~~~~-~~~~~~~~~~~~~~~~-~-~~VvViGgG~ 79 (183)
.+..||.+|||+||. +....+| |..++. .+.+..+.++ ...... +. . ..... . -.++|+|||+
T Consensus 96 ~~i~YD~LVvalGs~-~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~~fe~a------~--~~~~~~~~lti~IvGgG~ 165 (405)
T COG1252 96 GEISYDYLVVALGSE-TNYFGIP-GAAEYAFGLKTLEDALRLRRHLLEAFEKA------S--QEEDDRALLTIVIVGGGP 165 (405)
T ss_pred ccccccEEEEecCCc-CCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHh------h--ccccccceeEEEEECCCh
Confidence 345899999999994 7888899 544432 2333333322 221100 00 0 01111 1 2499999999
Q ss_pred hHHHHHHHHHHcCC----c--------eEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEE
Q psy16200 80 TAFDCATSALRCGA----N--------KVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAG 142 (183)
Q Consensus 80 ~g~e~A~~l~~~G~----~--------~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~ 142 (183)
+|+|+|..|+++-. + +|+||++.++. +|..++.+ +.+++.||++++++.++++.. +.|
T Consensus 166 TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I-Lp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~v-- 240 (405)
T COG1252 166 TGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI-LPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTP--DGV-- 240 (405)
T ss_pred hHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh-ccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECC--CcE--
Confidence 99999988775411 1 79999999875 66665443 245789999999999999974 333
Q ss_pred EEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 143 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 143 v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
++. ++.+ +|+||++|.|.|.++++
T Consensus 241 -~~~-------------~g~~-~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 241 -TLK-------------DGEE-EIPADTVVWAAGVRASP 264 (405)
T ss_pred -EEc-------------cCCe-eEecCEEEEcCCCcCCh
Confidence 332 2222 79999999999999875
No 80
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.37 E-value=8.8e-12 Score=82.10 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=59.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEE
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQF 145 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~ 145 (183)
||+|||||++|+|+|..|+++|. +|++++|++.. ++..++++ +++.+.||++++++.+.++..+++.++ |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~-~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRL-LPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSS-STTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchh-hhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEE
Confidence 58999999999999999999996 79999999875 45554433 346788999999999999987555566 666
Q ss_pred E
Q psy16200 146 N 146 (183)
Q Consensus 146 ~ 146 (183)
.
T Consensus 78 ~ 78 (80)
T PF00070_consen 78 E 78 (80)
T ss_dssp E
T ss_pred e
Confidence 3
No 81
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.36 E-value=8.5e-12 Score=103.43 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=80.4
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL 89 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~ 89 (183)
..+.||||||. .|..|.....+...+.|+++.+++..... ....++|+|||||.+|.|++..|.
T Consensus 147 ~ar~vVla~G~-~P~iP~~~~~~~~~~~v~Hss~~~~~~~~---------------~~~~~~V~VVGgGQSAAEi~~~L~ 210 (341)
T PF13434_consen 147 RARNVVLATGG-QPRIPEWFQDLPGSPRVFHSSEYLSRIDQ---------------SLAGKRVAVVGGGQSAAEIFLDLL 210 (341)
T ss_dssp EESEEEE-----EE---GGGGGGTT-TTEEEGGGHHHHHT--------------------EEEEEE-SSHHHHHHHHHHH
T ss_pred EeCeEEECcCC-CCCCCcchhhcCCCCCEEEehHhhhcccc---------------ccCCCeEEEECCcHhHHHHHHHHH
Confidence 46899999996 57766543121113679999999876521 234467999999999999999999
Q ss_pred HcCC-ceEEEEEeecCCcCCCC----------HH-------------------------------HHH----HH------
Q psy16200 90 RCGA-NKVLVVFRKGCTNIRAV----------PE-------------------------------EVQ----LA------ 117 (183)
Q Consensus 90 ~~G~-~~V~lv~r~~~~~~~~~----------~~-------------------------------~~~----~~------ 117 (183)
+.+. .+|+++.|+... .+.. ++ .++ .+
T Consensus 211 ~~~~~~~V~~i~R~~~~-~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~ 289 (341)
T PF13434_consen 211 RRGPEAKVTWISRSPGF-FPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVS 289 (341)
T ss_dssp HH-TTEEEEEEESSSS--EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEEECCCcc-CCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhc
Confidence 8874 479999997642 1111 11 000 00
Q ss_pred HHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 118 WEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 118 ~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
.+..+.++.++.+.++...+ +.+. +++... .+++..++++|.||+|+||+
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~----------~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHR----------QTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp T---SEEETTEEEEEEEEES-SSEE-EEEEET----------TT--EEEEEESEEEE---EE
T ss_pred CCCCeEEeCCCEEEEEEECCCCEEE-EEEEEC----------CCCCeEEEecCEEEEcCCcc
Confidence 01236788888888887644 4554 556431 45678899999999999985
No 82
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.28 E-value=8.8e-11 Score=98.24 Aligned_cols=142 Identities=22% Similarity=0.177 Sum_probs=93.9
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
+..||.+++|||++ |+.++ + ....++++....-..... + ......++|+|+|+|.+|+++|..
T Consensus 92 ~~~yd~LvlatGa~-~~~~~--~--~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~v~vvG~G~~gle~A~~ 154 (415)
T COG0446 92 EIEYDYLVLATGAR-PRPPP--I--SDWEGVVTLRLREDAEAL--K----------GGAEPPKDVVVVGAGPIGLEAAEA 154 (415)
T ss_pred cccccEEEEcCCCc-ccCCC--c--cccCceEEECCHHHHHHH--H----------HHHhccCeEEEECCcHHHHHHHHH
Confidence 34699999999995 77665 2 334445443322211111 0 001124679999999999999999
Q ss_pred HHHcCCceEEEEEeecCCcCCCC--H---HHH-HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200 88 ALRCGANKVLVVFRKGCTNIRAV--P---EEV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~~~~~~--~---~~~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g 161 (183)
|.++|. +|+++++.++. ++.. . ..+ ..+.+.||+++++..+.++....+.+..... ...
T Consensus 155 ~~~~G~-~v~l~e~~~~~-~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~-------------~~~ 219 (415)
T COG0446 155 AAKRGK-KVTLIEAADRL-GGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERV-------------VGI 219 (415)
T ss_pred HHHcCC-eEEEEEccccc-chhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEE-------------EEe
Confidence 999996 79999988764 3332 1 122 3457789999999999999864443321101 012
Q ss_pred ceEEEECCEEEEcccccccC
Q psy16200 162 QRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 162 ~~~~i~~D~Vi~a~G~~p~~ 181 (183)
....+++|.+++++|.+||+
T Consensus 220 ~~~~~~~d~~~~~~g~~p~~ 239 (415)
T COG0446 220 DGEEIKADLVIIGPGERPNV 239 (415)
T ss_pred CCcEEEeeEEEEeecccccH
Confidence 33478999999999999974
No 83
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.23 E-value=3.7e-11 Score=104.85 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=52.3
Q ss_pred CCCCEEEEccCCC-CCcccC--CCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHH
Q psy16200 9 DGYTAIFIGIGKP-NANVIP--IFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC 84 (183)
Q Consensus 9 ~~~davviATGa~-~p~~l~--i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~ 84 (183)
+.||+||||||.. .|+.|. +| |++.++| ++++.+|-.. ...-+|||+|||+|.+|+|+
T Consensus 137 ~~fD~VvvatG~~~~P~~P~~~~~-G~e~F~G~i~HS~~yr~~-----------------~~f~gKrVlVVG~g~Sg~DI 198 (531)
T PF00743_consen 137 EEFDAVVVATGHFSKPNIPEPSFP-GLEKFKGEIIHSKDYRDP-----------------EPFKGKRVLVVGGGNSGADI 198 (531)
T ss_dssp EEECEEEEEE-SSSCESB-----C-TGGGHCSEEEEGGG--TG-----------------GGGTTSEEEEESSSHHHHHH
T ss_pred EEeCeEEEcCCCcCCCCCChhhhh-hhhcCCeeEEccccCcCh-----------------hhcCCCEEEEEeCCHhHHHH
Confidence 3599999999974 466553 78 6666666 6666665321 12235679999999999999
Q ss_pred HHHHHHcCCceEEEEEeecCCcCCC
Q psy16200 85 ATSALRCGANKVLVVFRKGCTNIRA 109 (183)
Q Consensus 85 A~~l~~~G~~~V~lv~r~~~~~~~~ 109 (183)
|..+++.. ++|++..|++...+|.
T Consensus 199 a~el~~~a-~~v~~s~R~~~wv~pr 222 (531)
T PF00743_consen 199 AVELSRVA-KKVYLSTRRGAWVLPR 222 (531)
T ss_dssp HHHHTTTS-CCEEEECC--------
T ss_pred HHHHHHhc-CCeEEEEecccccccc
Confidence 99999984 6899999987654443
No 84
>KOG1346|consensus
Probab=99.16 E-value=2.1e-10 Score=95.64 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=91.0
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCC----C---ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM----G---FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT 80 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~----~---V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~ 80 (183)
..+||.++||||. +|+.+++.. +..+ . ..+..||-+..+. ..-.++|.|||+|+.
T Consensus 297 ~I~YdkcLIATG~-~Pk~l~~~~--~A~~evk~kit~fr~p~DF~rlek~---------------~aek~siTIiGnGfl 358 (659)
T KOG1346|consen 297 TIGYDKCLIATGV-RPKKLQVFE--EASEEVKQKITYFRYPADFKRLEKG---------------LAEKQSITIIGNGFL 358 (659)
T ss_pred EeehhheeeecCc-Ccccchhhh--hcCHHhhhheeEEecchHHHHHHHh---------------hhhcceEEEEcCcch
Confidence 3479999999998 599888642 2111 1 1223344332211 011145999999999
Q ss_pred HHHHHHHHHH----cCCceEEEEEeecCC---cCCCC--HHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeec
Q psy16200 81 AFDCATSALR----CGANKVLVVFRKGCT---NIRAV--PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQN 151 (183)
Q Consensus 81 g~e~A~~l~~----~G~~~V~lv~r~~~~---~~~~~--~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~ 151 (183)
|.|+|..|.+ .|. +|+.+...... .+|.. ...++...+.||.++.+..+.++......+. +++
T Consensus 359 gSELacsl~rk~r~~g~-eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~-lkL------ 430 (659)
T KOG1346|consen 359 GSELACSLKRKYRNEGV-EVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV-LKL------ 430 (659)
T ss_pred hhhHHHHHHHhhhccCc-EEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE-EEe------
Confidence 9999998875 355 58888765432 11211 2234566789999999999887754333332 333
Q ss_pred CCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 152 EKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 152 ~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.+| .++..|.||+|+|-.||++
T Consensus 431 -------~dG--~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 431 -------SDG--SELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred -------cCC--CeeeeeeEEEEecCCCchh
Confidence 233 3789999999999999986
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.00 E-value=5.6e-10 Score=85.23 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCCEEEEccCCC-CCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200 10 GYTAIFIGIGKP-NANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA 88 (183)
Q Consensus 10 ~~davviATGa~-~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l 88 (183)
.+|.||+|||.. .|+.|++| | .....++++.++... ....+++|+|||+|.+|+|+|..|
T Consensus 126 ~a~~VVlAtG~~~~p~~p~~~-g-~~~~~~~h~~~~~~~-----------------~~~~~k~V~VVG~G~SA~d~a~~l 186 (203)
T PF13738_consen 126 RADRVVLATGHYSHPRIPDIP-G-SAFRPIIHSADWRDP-----------------EDFKGKRVVVVGGGNSAVDIAYAL 186 (203)
T ss_dssp EEEEEEE---SSCSB---S-T-T-GGCSEEEEGGG-STT-----------------GGCTTSEEEEE--SHHHHHHHHHH
T ss_pred eeeeEEEeeeccCCCCccccc-c-ccccceEehhhcCCh-----------------hhcCCCcEEEEcChHHHHHHHHHH
Confidence 479999999963 58888888 4 333345555554321 122346799999999999999999
Q ss_pred HHcCCceEEEEEeecC
Q psy16200 89 LRCGANKVLVVFRKGC 104 (183)
Q Consensus 89 ~~~G~~~V~lv~r~~~ 104 (183)
++.| ++|+++.|++.
T Consensus 187 ~~~g-~~V~~~~R~~~ 201 (203)
T PF13738_consen 187 AKAG-KSVTLVTRSPI 201 (203)
T ss_dssp TTTC-SEEEEEESS--
T ss_pred HhhC-CEEEEEecCCC
Confidence 9998 58999999853
No 86
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.1e-09 Score=91.13 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=59.5
Q ss_pred CCCEEEEccCCC-CCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200 10 GYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS 87 (183)
Q Consensus 10 ~~davviATGa~-~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~ 87 (183)
.+|.||+|||.. .|+.|.++ |++++.| ++++.++-. .....+|||+|||+|.+|+++|..
T Consensus 132 ~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~~~~-----------------~~~~~GKrV~VIG~GaSA~di~~~ 193 (443)
T COG2072 132 TADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSADWPN-----------------PEDLRGKRVLVIGAGASAVDIAPE 193 (443)
T ss_pred ecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhcCCC-----------------ccccCCCeEEEECCCccHHHHHHH
Confidence 489999999964 68888999 6566655 444444422 123456779999999999999999
Q ss_pred HHHcCCceEEEEEeecCC
Q psy16200 88 ALRCGANKVLVVFRKGCT 105 (183)
Q Consensus 88 l~~~G~~~V~lv~r~~~~ 105 (183)
|++.| ++|+++.|++..
T Consensus 194 l~~~g-a~vt~~qRs~~~ 210 (443)
T COG2072 194 LAEVG-ASVTLSQRSPPH 210 (443)
T ss_pred HHhcC-CeeEEEecCCCc
Confidence 99999 489999998753
No 87
>KOG2495|consensus
Probab=98.85 E-value=1.1e-08 Score=85.51 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=92.0
Q ss_pred hCCCCEEEEccCCCCCcccCCCCCCccCC----CceehhhhHHHHhccc-cCCccCCCCCCCCCCCcc---eEEEEcCCh
Q psy16200 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM----GFYTSKTFLPRVATSS-KKGLCGGCKKESLPILKG---TVIVLGAGD 79 (183)
Q Consensus 8 ~~~~davviATGa~~p~~l~i~gg~~~~~----~V~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~VvViGgG~ 79 (183)
..+||.+|+|+|+ .+....+| |+.+.. -+..+.++-+...++. ++.. ... . .+-.+ +.||||||.
T Consensus 156 ~i~YDyLViA~GA-~~~TFgip-GV~e~~~FLKEv~dAqeIR~~~~~~le~a~~--~~l--~-~eerkRlLh~VVVGGGP 228 (491)
T KOG2495|consen 156 VIGYDYLVIAVGA-EPNTFGIP-GVEENAHFLKEVEDAQEIRRKVIDNLEKAEL--PGL--S-DEERKRLLHFVVVGGGP 228 (491)
T ss_pred eecccEEEEeccC-CCCCCCCC-chhhchhhhhhhhHHHHHHHHHHHHHHHhhc--CCC--C-hHHhhheEEEEEECCCC
Confidence 4579999999999 58888899 655432 2333333322221110 0000 000 0 11112 499999999
Q ss_pred hHHHHHHHHHHc--------------CCceEEEEEeecCCcCCCCHHHH-H----HHHHcCcEEEeCCcceEEEccCCcE
Q psy16200 80 TAFDCATSALRC--------------GANKVLVVFRKGCTNIRAVPEEV-Q----LAWEEKCEFLPFMSPVQVDVKDNKI 140 (183)
Q Consensus 80 ~g~e~A~~l~~~--------------G~~~V~lv~r~~~~~~~~~~~~~-~----~~~~~gv~~~~~~~~~~i~~~~~~v 140 (183)
+|+|+|..|+.. -. +||+++-.+.. ++..+..+ + +..+.||.+.+++.+..+.. ..
T Consensus 229 TGVEFAaEL~Dfi~~Dl~k~yp~l~~~i-~vtLiEA~d~i-L~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~- 303 (491)
T KOG2495|consen 229 TGVEFAAELADFIPEDLRKIYPELKKDI-KVTLIEAADHI-LNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KT- 303 (491)
T ss_pred cceeehHHHHHHHHHHHHHhhhcchhhe-EEEeeccchhH-HHHHHHHHHHHHHHHhhhccceeecccEEEeecC--cE-
Confidence 999999888733 23 58888766543 44444332 2 33567999999999988864 22
Q ss_pred EEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200 141 AGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180 (183)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 180 (183)
|.... .+|+..+||.-.++.|+|..|.
T Consensus 304 --I~~~~-----------~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 304 --IHAKT-----------KDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred --EEEEc-----------CCCceeeecceEEEecCCCCCc
Confidence 22321 3567789999999999998774
No 88
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.75 E-value=2e-07 Score=75.01 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=63.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC---C-------cCCCC-----HHHH-----HHHHHcCcEEEeCCcc
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC---T-------NIRAV-----PEEV-----QLAWEEKCEFLPFMSP 130 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~---~-------~~~~~-----~~~~-----~~~~~~gv~~~~~~~~ 130 (183)
+|+|||||..|+.+|..|.+.|. +|+|+++... . ..|.. ..++ ..+.+.|+++++ ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL-KTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEE
Confidence 49999999999999999999997 6999997541 0 01211 1111 234567899887 677
Q ss_pred eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.++..+++.++ ++. .++ .++.+|.||+|+|..|+.
T Consensus 80 ~~v~~~~~~~~-v~~-------------~~~--~~~~~d~liiAtG~~~~~ 114 (300)
T TIGR01292 80 IKVDLSDRPFK-VKT-------------GDG--KEYTAKAVIIATGASARK 114 (300)
T ss_pred EEEEecCCeeE-EEe-------------CCC--CEEEeCEEEECCCCCccc
Confidence 77764333222 222 122 368999999999998864
No 89
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.72 E-value=2.1e-07 Score=77.68 Aligned_cols=143 Identities=15% Similarity=0.230 Sum_probs=91.2
Q ss_pred CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcce-EEEEcCChhHHHHHHHH
Q psy16200 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSA 88 (183)
Q Consensus 10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-VvViGgG~~g~e~A~~l 88 (183)
..+.+||++|. .|..|+.... ...+.|+++.+|+.... ....++ |.|||+|.+|.|+-..|
T Consensus 145 ~ar~lVlg~G~-~P~IP~~f~~-l~~~~vfHss~~~~~~~----------------~~~~~~~V~ViG~GQSAAEi~~~L 206 (436)
T COG3486 145 RARNLVLGVGT-QPYIPPCFRS-LIGERVFHSSEYLERHP----------------ELLQKRSVTVIGSGQSAAEIFLDL 206 (436)
T ss_pred EeeeEEEccCC-CcCCChHHhC-cCccceeehHHHHHhhH----------------HhhcCceEEEEcCCccHHHHHHHH
Confidence 35789999997 5887764322 22356999999986532 223345 99999999999988877
Q ss_pred HHcC--C-ceEEEEEeecCCcCCCCHH--------------------H--------------------HH----HH----
Q psy16200 89 LRCG--A-NKVLVVFRKGCTNIRAVPE--------------------E--------------------VQ----LA---- 117 (183)
Q Consensus 89 ~~~G--~-~~V~lv~r~~~~~~~~~~~--------------------~--------------------~~----~~---- 117 (183)
...- . .++..+.|+... .|.... + +. .+
T Consensus 207 l~~~~~~~~~l~witR~~gf-~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~ 285 (436)
T COG3486 207 LNSQPPQDYQLNWITRSSGF-LPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQS 285 (436)
T ss_pred HhCCCCcCccceeeeccCCC-CccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHH
Confidence 5431 1 136678887542 222100 0 00 00
Q ss_pred ---HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 118 ---WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 118 ---~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.+..+.++.++.+.++..+++....+.+.. ..+++..++++|.||+|+||+...
T Consensus 286 l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~----------~~~~~~~t~~~D~vIlATGY~~~~ 342 (436)
T COG3486 286 LGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH----------HETGELETVETDAVILATGYRRAV 342 (436)
T ss_pred hcCCCCCeeeccccceeeeecCCCceEEEEEee----------ccCCCceEEEeeEEEEecccccCC
Confidence 023467788888888876443323355543 146778899999999999998543
No 90
>KOG1399|consensus
Probab=98.70 E-value=4.6e-08 Score=83.70 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=54.1
Q ss_pred hhCCCCEEEEccCCCC-CcccCCCCC-CccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200 7 RKDGYTAIFIGIGKPN-ANVIPIFQG-LTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD 83 (183)
Q Consensus 7 ~~~~~davviATGa~~-p~~l~i~gg-~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e 83 (183)
.++-||+|++|||... |+.|.+|+. ++.++| ++++.+|-.. ....+++|+|||+|++|+|
T Consensus 138 ~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~-----------------e~f~~k~VlVIG~g~SG~D 200 (448)
T KOG1399|consen 138 EEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSP-----------------EKFRDKVVLVVGCGNSGMD 200 (448)
T ss_pred eEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCc-----------------ccccCceEEEECCCccHHH
Confidence 4556999999999753 777778731 335554 5555554311 1223456999999999999
Q ss_pred HHHHHHHcCCceEEEEEe
Q psy16200 84 CATSALRCGANKVLVVFR 101 (183)
Q Consensus 84 ~A~~l~~~G~~~V~lv~r 101 (183)
++..+++.. ++|++..+
T Consensus 201 Is~d~~~~a-k~v~~~~~ 217 (448)
T KOG1399|consen 201 ISLDLLRVA-KEVHLSVV 217 (448)
T ss_pred HHHHHHHhc-cCcceeee
Confidence 999988874 57988865
No 91
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.66 E-value=2.5e-07 Score=79.07 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=66.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCc-----CCC-------CHHH-----HHHHHHcCcEEEeCCcceE
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTN-----IRA-------VPEE-----VQLAWEEKCEFLPFMSPVQ 132 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~-----~~~-------~~~~-----~~~~~~~gv~~~~~~~~~~ 132 (183)
||+|||||+.|+.+|..|++++. -+|+|+++++... ++. ...+ ...+.+.|++++++..+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 69999999999999999998863 1699999876421 111 0111 1235667999998888888
Q ss_pred EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
+..++..+ ++.. ..+++...+.+|.+|+|+|.+|+.
T Consensus 82 id~~~~~v---~~~~----------~~~~~~~~~~yd~lviAtG~~~~~ 117 (444)
T PRK09564 82 VDAKNKTI---TVKN----------LKTGSIFNDTYDKLMIATGARPII 117 (444)
T ss_pred EECCCCEE---EEEE----------CCCCCEEEecCCEEEECCCCCCCC
Confidence 86544433 2321 012333445599999999999864
No 92
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.55 E-value=1.2e-06 Score=74.95 Aligned_cols=99 Identities=9% Similarity=0.124 Sum_probs=66.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-C----CCC-------H-HHH----HHH-HHcCcEEEeCCc
Q psy16200 70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-I----RAV-------P-EEV----QLA-WEEKCEFLPFMS 129 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-~----~~~-------~-~~~----~~~-~~~gv~~~~~~~ 129 (183)
+||||||||+.|+.+|..|.++ +. +|+|+.+++... . |.. . ..+ +.+ .+.|++++.+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~-~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKES-DIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCC-CEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 3699999999999999999877 44 699999875321 1 111 0 011 122 346899998888
Q ss_pred ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+.++..++..| .+.. ..+++..++.+|.+|+|+|..|+..
T Consensus 81 V~~Id~~~~~v---~~~~----------~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 81 VIAINDERQTV---TVLN----------RKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEEECCCCEE---EEEE----------CCCCcEEeeecCEEEECCCCCCCCC
Confidence 88887544433 2321 0123445688999999999998643
No 93
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.48 E-value=3.3e-07 Score=69.61 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=66.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-----CCCC------H-----------HHHHHHHHcCcEEEeCC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-----IRAV------P-----------EEVQLAWEEKCEFLPFM 128 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-----~~~~------~-----------~~~~~~~~~gv~~~~~~ 128 (183)
+|+|||||..|+.+|..|++.+. +|+++++.+... ++.. . ..++.+...+++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-eEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeecc
Confidence 58999999999999999999997 699996543210 0000 0 11112346789998888
Q ss_pred cceEEEccCCcEEE--EEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 129 SPVQVDVKDNKIAG--MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 129 ~~~~i~~~~~~v~~--v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.+.++......+.. +.+.. ..+++..++.+|+||+|+|..|+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~d~lviAtG~~~~~ 124 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQV----------VETGDGREIKYDYLVIATGSRPRT 124 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEE----------EETTTEEEEEEEEEEEESTEEEEE
T ss_pred ccccccccccccccCccccee----------eccCCceEecCCeeeecCccccce
Confidence 88888654443210 01110 135567899999999999998764
No 94
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.47 E-value=2.6e-06 Score=69.61 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+|++|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGI-DVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence 49999999999999999999998 6999998543
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.43 E-value=1.2e-06 Score=74.41 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=54.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-----------------------cCCC---CHH------------
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-----------------------NIRA---VPE------------ 112 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-----------------------~~~~---~~~------------ 112 (183)
+|+|||||..|+-+|..+++.|. +|+|++|.... .... ...
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 38999999999999999999997 69999984321 0000 000
Q ss_pred ----------------------------------HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeec
Q psy16200 113 ----------------------------------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE 158 (183)
Q Consensus 113 ----------------------------------~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~ 158 (183)
....+.+.||++++++.+.++..+++.+..|+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~------------- 147 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT------------- 147 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE-------------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec-------------
Confidence 112235568999999999999765566544443
Q ss_pred CCCceEEEECCEEEEcccccc
Q psy16200 159 DEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 159 ~~g~~~~i~~D~Vi~a~G~~p 179 (183)
.....+.||.||+|+|-.+
T Consensus 148 --~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 148 --KNGGEYEADAVILATGGKS 166 (409)
T ss_dssp --TTTEEEEESEEEE----SS
T ss_pred --cCcccccCCEEEEecCCCC
Confidence 1345899999999999654
No 96
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.43 E-value=2.3e-06 Score=72.22 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=62.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCC-c--CCCCHHH-------------HHHHHHcCcEEEeCCcceE
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCT-N--IRAVPEE-------------VQLAWEEKCEFLPFMSPVQ 132 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~-~--~~~~~~~-------------~~~~~~~gv~~~~~~~~~~ 132 (183)
++|+|||||..|+.+|..|.++|.+ +|+|+.+++.. . .+..... .....+.+|+++.++.+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~ 83 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKT 83 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEE
Confidence 5699999999999999999998742 59999876431 0 0111111 1123456888888877777
Q ss_pred EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
+..++..+ .+ .+|+ ++.+|.||+|+|..|..
T Consensus 84 id~~~~~v---~~-------------~~g~--~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 84 LGRDTREL---VL-------------TNGE--SWHWDQLFIATGAAARP 114 (396)
T ss_pred EECCCCEE---EE-------------CCCC--EEEcCEEEEccCCCCCC
Confidence 75432222 22 2232 68999999999999853
No 97
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.41 E-value=5.1e-06 Score=72.62 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=63.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC------------C-CCHHH-----HHHHHHcCcEEEeCCcce
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI------------R-AVPEE-----VQLAWEEKCEFLPFMSPV 131 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~------------~-~~~~~-----~~~~~~~gv~~~~~~~~~ 131 (183)
.+|+|||||..|+.+|..|++.|. +|+++..+-..+. + ....+ ...+.+.|++++.+..+.
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~-~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGL-RTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 469999999999999999999997 6999964211000 0 11111 123456789999998888
Q ss_pred EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
++..+++... +++ .++. .+.+|.+|+|+|..|..
T Consensus 292 ~I~~~~~~~~-v~~-------------~~g~--~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 292 KIETEDGLIV-VTL-------------ESGE--VLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEecCCeEE-EEE-------------CCCC--EEEeCEEEECCCCCcCC
Confidence 8764333222 222 1232 68999999999998753
No 98
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.38 E-value=4.9e-06 Score=69.51 Aligned_cols=31 Identities=32% Similarity=0.575 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+-+|..+++.|. +|+++++.
T Consensus 5 dviIIGgGpAGlMaA~~aa~~G~-~V~lid~~ 35 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKAGR-RVLLIDKG 35 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhcCC-EEEEEecC
Confidence 49999999999999999999996 79999973
No 99
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.36 E-value=1.8e-06 Score=71.85 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc--C----CC---CHH----HHHHHHHcCcEEEeCCcceE
Q psy16200 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN--I----RA---VPE----EVQLAWEEKCEFLPFMSPVQ 132 (183)
Q Consensus 66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~--~----~~---~~~----~~~~~~~~gv~~~~~~~~~~ 132 (183)
+..+++|+|||+|+.|+++|..|++.|. +|+++++.+... + +. ..+ .+..+.+.|++++.++.+..
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence 4456789999999999999999999996 699999865421 1 11 111 23345667899988876644
Q ss_pred EEc----cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 133 VDV----KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 133 i~~----~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
+.. +.+... ... ...+...+.+|.||+|+|..
T Consensus 94 ~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 94 GEPLHEEEGDEFV-ERI-------------VSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred ccccccccccccc-ccc-------------CCHHHHHhhCCEEEEEeCCC
Confidence 321 001000 000 01111246899999999983
No 100
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.34 E-value=1.4e-05 Score=68.96 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=30.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.++|+|||||..|+-+|..|.+.|. +|+++++++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 4679999999999999999999997 699999854
No 101
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.31 E-value=1.2e-05 Score=70.40 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=63.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------C---CC-CHHHH-----HHHHHcCcEEEeCCcce
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------I---RA-VPEEV-----QLAWEEKCEFLPFMSPV 131 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~---~~-~~~~~-----~~~~~~gv~~~~~~~~~ 131 (183)
-+|+|||||..|+.+|.+|+++|. +|+++.++-..+ . +. ...++ ..+.+.|+++++++.+.
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~-~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGI-RTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 359999999999999999999997 699997531000 0 11 11121 23456789999888888
Q ss_pred EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
++..+++..+ +++ .++. ++.+|.||+|+|..|..
T Consensus 291 ~I~~~~~~~~-V~~-------------~~g~--~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAAGLIE-VEL-------------ANGA--VLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecCCeEE-EEE-------------CCCC--EEEcCEEEECCCCCcCC
Confidence 8765333222 322 1232 68899999999987753
No 102
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.30 E-value=7.9e-06 Score=68.79 Aligned_cols=30 Identities=43% Similarity=0.670 Sum_probs=25.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+|+|||||..|+|+|..+++.|+ +|.|+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~-~V~Lit~ 30 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGA-KVLLITH 30 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---EEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEee
Confidence 48999999999999999999998 6999953
No 103
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.29 E-value=9.1e-06 Score=68.14 Aligned_cols=94 Identities=10% Similarity=0.185 Sum_probs=62.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCc--CCCC---------HHHH------HHHHHcCcEEEeCCcce
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTN--IRAV---------PEEV------QLAWEEKCEFLPFMSPV 131 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~--~~~~---------~~~~------~~~~~~gv~~~~~~~~~ 131 (183)
++|||||||..|+.+|+.|.+++. -+|+++.+.+... .+.. ..++ +.+.+.|++++.+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 469999999999999999987542 2699998865311 0111 1111 11245689998888887
Q ss_pred EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
++..++..+ +. ++ ..+.+|.||+|+|..|...
T Consensus 83 ~id~~~~~v---~~--------------~~--~~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 83 DIDAEAQVV---KS--------------QG--NQWQYDKLVLATGASAFVP 114 (377)
T ss_pred EEECCCCEE---EE--------------CC--eEEeCCEEEECCCCCCCCC
Confidence 776432222 11 22 3689999999999998643
No 104
>PRK10262 thioredoxin reductase; Provisional
Probab=98.28 E-value=9.5e-06 Score=66.50 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=28.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
++|+|||||..|+.+|..|+++|. +|++++.
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~ 37 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANL-QPVLITG 37 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CeEEEEe
Confidence 569999999999999999999997 5988875
No 105
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.27 E-value=2e-05 Score=62.98 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=29.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
|+|||||..|+-+|..|++.|. +|++++++.
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~ 33 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGL-RVLLLEKKS 33 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 8999999999999999999997 699999874
No 106
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.24 E-value=2.5e-05 Score=62.50 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=69.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCC----------------------------CHH
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRA----------------------------VPE 112 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~----------------------------~~~ 112 (183)
-+|+|||||..|+-+|..|++.|. +|.++++..... .+. ...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 359999999999999999999997 699999864310 000 001
Q ss_pred H-----HHHHHHcCcEEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 113 E-----VQLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 113 ~-----~~~~~~~gv~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
+ ...+.+.|+++++++.+.++..+++ ++.++.+........+ ......++.|+.||.|+|...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g----~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG----LHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC----CCCCcEEEEcCEEEEEeCCCc
Confidence 1 1234567999999999988865444 7877765321000000 112346899999999999643
No 107
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.23 E-value=2.5e-05 Score=66.04 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 459999999999999999999997 6999998754
No 108
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.23 E-value=2.1e-05 Score=62.85 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=69.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCCC------HH----------------------H
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRAV------PE----------------------E 113 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~~------~~----------------------~ 113 (183)
+|+|||||..|+-+|..|++.|. +|.+++|+...- ++.. .+ +
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e 101 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE 101 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence 59999999999999999999997 699999864310 0000 00 1
Q ss_pred -----HHHHHHcCcEEEeCCcceEEEccCC--cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 114 -----VQLAWEEKCEFLPFMSPVQVDVKDN--KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 114 -----~~~~~~~gv~~~~~~~~~~i~~~~~--~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
..++.+.|++++.++.+.++..+++ ++.++.+........+ ......++.++.||.|+|...
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g----~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG----LHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC----CCCCCEEEEcCEEEEeecCCc
Confidence 1233567899999999988865444 5777765211000000 011246899999999999654
No 109
>PRK06847 hypothetical protein; Provisional
Probab=98.23 E-value=2.1e-05 Score=65.52 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~ 37 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP 37 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 469999999999999999999998 699999864
No 110
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.22 E-value=1.7e-05 Score=64.85 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeec
Confidence 48999999999999999999997 79999986
No 111
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.21 E-value=7.7e-06 Score=68.08 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=58.3
Q ss_pred eEEEEcCChhHHHHHHHHHHc---CCceEEEEEeecCCcC-CCCH---------HHH-----HHHHHcCcEEEeCCcceE
Q psy16200 71 TVIVLGAGDTAFDCATSALRC---GANKVLVVFRKGCTNI-RAVP---------EEV-----QLAWEEKCEFLPFMSPVQ 132 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~---G~~~V~lv~r~~~~~~-~~~~---------~~~-----~~~~~~gv~~~~~~~~~~ 132 (183)
+|||||||+.|+.+|..+.++ +. +|+|+++++.... +..+ +++ ..+.+.|++|+.. .+.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEE
Confidence 489999999999999998643 44 6999998764211 1111 111 1234467887764 5566
Q ss_pred EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
+..++..| .+ .+|+ ++..|.||+|+|..|+.
T Consensus 79 id~~~~~V---~~-------------~~g~--~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 79 IDPDRRKV---LL-------------ANRP--PLSYDVLSLDVGSTTPL 109 (364)
T ss_pred EecccCEE---EE-------------CCCC--cccccEEEEccCCCCCC
Confidence 65332222 22 1232 58999999999999864
No 112
>PRK07236 hypothetical protein; Provisional
Probab=98.20 E-value=2.8e-05 Score=65.28 Aligned_cols=34 Identities=24% Similarity=0.144 Sum_probs=31.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+.+|..|++.|. +|+|+++++.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence 569999999999999999999998 6999998753
No 113
>PRK08244 hypothetical protein; Provisional
Probab=98.20 E-value=2.2e-05 Score=68.18 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|++.|. +|+|+++++
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~ 35 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGV-KTCVIERLK 35 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 49999999999999999999998 699999854
No 114
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.19 E-value=2.4e-05 Score=67.60 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=29.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|+|||+|..|+.+|..++++|. +|++++++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGA-DVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccC
Confidence 459999999999999999999996 699999754
No 115
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.19 E-value=7.2e-06 Score=76.34 Aligned_cols=88 Identities=15% Similarity=-0.000 Sum_probs=60.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC-------HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV-------PEEVQLAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~-------~~~~~~~~~~gv~~~~~~~~~~i~ 134 (183)
.++||+|||+|..|+.+|.+|++.|. +|+++++.... ..|.. +.+++.+++.||+|+++..+-+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~-- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK-- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc--
Confidence 45779999999999999999999997 69999986431 12221 1244566788999988864311
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc-cc
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST-LL 180 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~-p~ 180 (183)
. +++. +-.....|.||+|+|.. |.
T Consensus 382 ----d---it~~---------------~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 ----T---ATLE---------------DLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ----E---EeHH---------------HhccccCCEEEEeCCCCCCC
Confidence 1 2221 11234689999999984 54
No 116
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.19 E-value=2.6e-05 Score=68.05 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~ 94 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMP 94 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 49999999999999999999998 699999743
No 117
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.18 E-value=3.6e-05 Score=67.86 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||.+|+-+|..|+++|. +|+|+++.
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~ 38 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRGL-RCILVERH 38 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcCC-eEEEEECC
Confidence 49999999999999999999997 69999984
No 118
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.18 E-value=1.3e-05 Score=60.93 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=52.8
Q ss_pred EEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-------------cCCC--------------C-H-------------
Q psy16200 73 IVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-------------NIRA--------------V-P------------- 111 (183)
Q Consensus 73 vViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-------------~~~~--------------~-~------------- 111 (183)
+|||||..|+-+|..|.+.|.++|++++|.+.. ..|. . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 699999999999999999998449999985321 0000 0 0
Q ss_pred -HHH-H----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc--cccC
Q psy16200 112 -EEV-Q----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS--TLLD 181 (183)
Q Consensus 112 -~~~-~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~ 181 (183)
+++ + .+.+.++++++++.+.++..++++-+ +++ .++ +++.||.||+|+|. .|+.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~-v~~-------------~~~--~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWT-VTT-------------RDG--RTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEE-EEE-------------TTS---EEEEEEEEE---SSCSB--
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEE-EEE-------------Eec--ceeeeeeEEEeeeccCCCCc
Confidence 011 1 12456788888999888876544432 443 223 57889999999996 5543
No 119
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.17 E-value=1.1e-05 Score=68.82 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=59.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC-CCCH---------HHH----H-HHHHcCcEEEeCCcceEEE
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI-RAVP---------EEV----Q-LAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~-~~~~---------~~~----~-~~~~~gv~~~~~~~~~~i~ 134 (183)
++|||||||+.|+.+|..|.+.+. +|+||.+++.... |... +.+ . .+...++.|+.. .+.+|.
T Consensus 11 ~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id 88 (424)
T PTZ00318 11 PNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDVD 88 (424)
T ss_pred CeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEEE
Confidence 569999999999999998876555 6999998765321 1111 111 1 122345655433 455554
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.++..+. +... .... ..+++..++++|.+|+|+|..|+.
T Consensus 89 ~~~~~v~-~~~~-----~~~~--~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 89 FEEKRVK-CGVV-----SKSN--NANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred cCCCEEE-Eecc-----cccc--cccCCceEecCCEEEECCCcccCC
Confidence 3333332 1110 0000 011233479999999999999864
No 120
>PRK06184 hypothetical protein; Provisional
Probab=98.17 E-value=3.1e-05 Score=67.38 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|+++|. +|+|+++++
T Consensus 5 dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~ 36 (502)
T PRK06184 5 DVLIVGAGPTGLTLAIELARRGV-SFRLIEKAP 36 (502)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 49999999999999999999998 699999864
No 121
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.17 E-value=8.2e-06 Score=70.62 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=56.6
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEe
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRT 148 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~ 148 (183)
+++|+|||+|.+|+++|..|+++|. +|+++++++.. ........+.+.|++++++..+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~---~~~~~~~~l~~~gv~~~~~~~~~----------------- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDE---RHRALAAILEALGATVRLGPGPT----------------- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchh---hhHHHHHHHHHcCCEEEECCCcc-----------------
Confidence 4679999999999999999999997 69999866421 11222344667788887664321
Q ss_pred eecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 149 EQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 149 ~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
....+|.||++.|..|+++
T Consensus 75 ---------------~~~~~D~Vv~s~Gi~~~~~ 93 (480)
T PRK01438 75 ---------------LPEDTDLVVTSPGWRPDAP 93 (480)
T ss_pred ---------------ccCCCCEEEECCCcCCCCH
Confidence 0134789999999999864
No 122
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.15 E-value=1.1e-05 Score=75.15 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=58.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC-------HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV-------PEEVQLAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~-------~~~~~~~~~~gv~~~~~~~~~~i~ 134 (183)
.+++|+|||||..|+.+|.+|++.|. +|+|+++++.. ..|.. ..+++.+.+.||+|++++.+ .+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di- 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL- 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE-
Confidence 34679999999999999999999997 79999986431 11221 12234556779999888654 11
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
++. .......|.||+|+|..+
T Consensus 615 ---------~le---------------~L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 615 ---------TVE---------------QLKNEGYDYVVVAIGADK 635 (1019)
T ss_pred ---------Ehh---------------hheeccCCEEEECcCCCC
Confidence 111 012345799999999875
No 123
>PRK12831 putative oxidoreductase; Provisional
Probab=98.15 E-value=9e-06 Score=70.24 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=58.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCCC---HH-----HHHHHHHcCcEEEeCCcceEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRAV---PE-----EVQLAWEEKCEFLPFMSPVQV 133 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~~---~~-----~~~~~~~~gv~~~~~~~~~~i 133 (183)
.+++|+|||||..|+.+|.+|+++|. +|+++++.... . .|.. .+ +.+.+.+.|++|++++.+.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 45679999999999999999999997 69999975421 0 1211 11 22345677999988864311
Q ss_pred EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc-ccc
Q psy16200 134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS-TLL 180 (183)
Q Consensus 134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~-~p~ 180 (183)
. +++ ++....+.+|.||+|+|. .|.
T Consensus 217 -----~---v~~--------------~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 -----T---VTI--------------DELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred -----c---CCH--------------HHHHhccCCCEEEEeCCCCCCC
Confidence 1 111 011123568999999997 454
No 124
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.14 E-value=6.1e-06 Score=70.56 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+.+|..|+++|. +|+|+++++
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~ 36 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGK-KVALVEESK 36 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence 49999999999999999999996 799999864
No 125
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.13 E-value=1.7e-05 Score=72.63 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=63.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCC--ceEEEEEeecCCc-----CCC------CHHHH-----HHHHHcCcEEEeCCcceEE
Q psy16200 72 VIVLGAGDTAFDCATSALRCGA--NKVLVVFRKGCTN-----IRA------VPEEV-----QLAWEEKCEFLPFMSPVQV 133 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~--~~V~lv~r~~~~~-----~~~------~~~~~-----~~~~~~gv~~~~~~~~~~i 133 (183)
|||||||..|+.+|..|.+++. -+|+|+.+++... ++. ..+++ +.+.+.||+++++..+.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 6899999999999999887641 2699999876521 110 01111 2345679999999888888
Q ss_pred EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
..+...| .+ .+| .++++|.||+|+|..|+..
T Consensus 81 d~~~k~V---~~-------------~~g--~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTDQKQV---IT-------------DAG--RTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECCCCEE---EE-------------CCC--cEeeCCEEEECCCCCcCCC
Confidence 6432222 22 123 3689999999999998753
No 126
>PRK06185 hypothetical protein; Provisional
Probab=98.12 E-value=5e-05 Score=64.04 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
-+|+|||||.+|+-+|..|++.|. +|+|+++++
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 359999999999999999999997 699999864
No 127
>PRK06834 hypothetical protein; Provisional
Probab=98.11 E-value=4.4e-05 Score=66.42 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~G~-~v~vlEr~~ 36 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALAGV-DVAIVERRP 36 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 49999999999999999999998 699999865
No 128
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.10 E-value=2.7e-05 Score=71.80 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=63.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC---ceEEEEEeecCCc-CC----C-----CHHHH-----HHHHHcCcEEEeCCcce
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGA---NKVLVVFRKGCTN-IR----A-----VPEEV-----QLAWEEKCEFLPFMSPV 131 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~---~~V~lv~r~~~~~-~~----~-----~~~~~-----~~~~~~gv~~~~~~~~~ 131 (183)
+||||||+|+.|+.+|..|.+++. -+|+++.+++... .+ . ..+++ ..+.+.||+++.+..+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 479999999999999999976531 2699998876521 00 0 01111 23456789999988887
Q ss_pred EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
++..+ .++ |.. .+| .++.+|.||+|+|..|...
T Consensus 84 ~Id~~-~~~--V~~-------------~~G--~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 84 TINRQ-EKV--IHS-------------SAG--RTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEeCC-CcE--EEE-------------CCC--cEEECCEEEECCCCCcCCC
Confidence 77542 221 222 123 3689999999999998643
No 129
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.10 E-value=6.7e-06 Score=70.79 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=57.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CHH----HHHHHHHcCcEEEeCCcceEE
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VPE----EVQLAWEEKCEFLPFMSPVQV 133 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~~----~~~~~~~~gv~~~~~~~~~~i 133 (183)
..+++|+|||||..|+.+|..|++.|. +|+++++.+... .|. ..+ ....+.+.|+++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-
Confidence 345679999999999999999999996 799999865420 111 111 22345667899887765411
Q ss_pred EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
. +++ .+ ..+.+|.||+|+|..
T Consensus 216 -----~---v~~--------------~~--~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -----D---ITL--------------DE--LRAGYDAVFIGTGAG 236 (457)
T ss_pred -----c---cCH--------------HH--HHhhCCEEEEccCCC
Confidence 0 111 01 126789999999985
No 130
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.08 E-value=4.9e-05 Score=63.89 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus 8 dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~ 39 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADAGL-SVALVEGRE 39 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence 59999999999999999999997 699999864
No 131
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.07 E-value=2.4e-05 Score=66.15 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecCC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGCT 105 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~~ 105 (183)
++|||+|||+-|+.+|..|.+.- + +|++|.|++..
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~h 40 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYH 40 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCcc
Confidence 57999999999999999999874 6 59999998764
No 132
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.06 E-value=8e-06 Score=70.93 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=57.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CH----HHHHHHHHcCcEEEeCCcceEEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~----~~~~~~~~~gv~~~~~~~~~~i~ 134 (183)
.+++|+|||+|..|+.+|.+|++.|. +|+++++.+... .|. .. ..++.+.+.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc-
Confidence 34679999999999999999999997 699999865320 121 11 1234456789999887765210
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
+ . .......+|.||+|+|..
T Consensus 220 -----~---~----------------~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 -----I---S----------------ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred -----c---C----------------HHHHHhhCCEEEEccCCC
Confidence 0 0 011134689999999987
No 133
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.06 E-value=9.1e-05 Score=63.83 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~-~V~vlEk~~ 37 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGA-SVLLLEAAP 37 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 49999999999999999999998 699999754
No 134
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.04 E-value=8.7e-05 Score=62.51 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCc
Confidence 359999999999999999999997 6999998763
No 135
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.03 E-value=1.7e-05 Score=68.61 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=59.1
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---C----HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---V----PEEVQLAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~----~~~~~~~~~~gv~~~~~~~~~~i~ 134 (183)
.+++|+|||+|..|+.+|.+|++.|. +|+++++.+... +|. . ..+.+.+.+.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-
Confidence 44679999999999999999999997 699998865320 121 1 12344567889999888654210
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 180 (183)
+.+ .+ ....+|.||+|+|..+.
T Consensus 218 --------~~~--------------~~--~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISL--------------DD--LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCH--------------HH--HHhcCCEEEEEeCCCCC
Confidence 111 00 12368999999998763
No 136
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.02 E-value=2.2e-05 Score=67.48 Aligned_cols=62 Identities=23% Similarity=0.234 Sum_probs=44.7
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCC---CHH----HHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA---VPE----EVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~---~~~----~~~~~~~~gv~~~~~~~~ 130 (183)
.+++|+|||||..|+.+|..|+++|. +|+++++.+.. ..+. ..+ ++..+.+.|++|+++..+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 34579999999999999999999997 69999986432 0121 111 223456788999888643
No 137
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=0.00011 Score=63.22 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+.+|..|+++|. +|+++++.
T Consensus 7 DvvVIGaGpaG~~aA~~la~~G~-~v~liE~~ 37 (461)
T PRK05249 7 DLVVIGSGPAGEGAAMQAAKLGK-RVAVIERY 37 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence 49999999999999999999996 79999985
No 138
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.02 E-value=7.2e-05 Score=63.34 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=35.4
Q ss_pred HcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 119 EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 119 ~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
+.|++|++++.++++..++++|+++.+.. ..+++...+.++.||+|+|-..
T Consensus 153 ~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~----------~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 153 EAGVDIRFNTRVTDLITEDGRVTGVVAEN----------PADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HTTEEEEESEEEEEEEEETTEEEEEEEEE----------TTTCEEEEEEESEEEE----BG
T ss_pred hcCeeeeccceeeeEEEeCCceeEEEEEE----------CCCCeEEEEeeeEEEeccCccc
Confidence 44678888888888776677888887742 1467778899999999999654
No 139
>PRK10015 oxidoreductase; Provisional
Probab=98.01 E-value=8.4e-05 Score=63.61 Aligned_cols=32 Identities=38% Similarity=0.427 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||..|+-+|..|++.|. +|.+++|..
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~ 38 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGL-DVLVIERGD 38 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 49999999999999999999997 699999854
No 140
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.01 E-value=4.6e-06 Score=71.27 Aligned_cols=93 Identities=29% Similarity=0.387 Sum_probs=26.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-----------CCCC------------------------------
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-----------IRAV------------------------------ 110 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-----------~~~~------------------------------ 110 (183)
|||||||..|+-+|..+++.|+ +|.||++.+..- ....
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred EEEECccHHHHHHHHHHHHCCC-EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 8999999999999999999997 699999854210 0000
Q ss_pred --------HHH----H-HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200 111 --------PEE----V-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 177 (183)
Q Consensus 111 --------~~~----~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~ 177 (183)
+.. + +.+.+.|+++++++.+.++..++++|++|++.. ..| ..++.|+.+|-|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~-----------~~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVET-----------KSG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-----------ccc-ccccccccccccccc
Confidence 000 0 012356899999999998887777888887742 123 678999999999983
No 141
>PRK06126 hypothetical protein; Provisional
Probab=98.00 E-value=0.0001 Score=64.78 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=29.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
-+|+|||||.+|+-+|..|+++|. +|+|++|++
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~ 40 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGV-DSILVERKD 40 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 459999999999999999999998 699999854
No 142
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.99 E-value=8.1e-05 Score=63.65 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||..|+-+|..|++.|. +|.+++|..
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~ 38 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGA-QVLVIERGN 38 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCC
Confidence 49999999999999999999997 699999864
No 143
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.99 E-value=9e-05 Score=57.61 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=68.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC---------cCCCC--H---H-----------------------
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT---------NIRAV--P---E----------------------- 112 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~---------~~~~~--~---~----------------------- 112 (183)
-.|+|+|+|.+|+.+|.+|++.|. +|++++|+-.. .++.. . .
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 349999999999999999999998 69999996421 01110 0 0
Q ss_pred -----HHHHHHHcCcEEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 113 -----EVQLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 113 -----~~~~~~~~gv~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
....+.+.|.++.....+..+...++ +|+++.+.-.-....+ ... ...+++++.||=|+|...
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~--lhv--DPl~i~a~~VvDaTGHda 178 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG--LHV--DPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--ccc--CcceeeEEEEEeCCCCch
Confidence 01123456888988899988766555 7888865311000000 001 123788999999999764
No 144
>PLN02463 lycopene beta cyclase
Probab=97.98 E-value=0.00011 Score=63.37 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|.++++++.
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~~ 62 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSPL 62 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEeccCcc
Confidence 59999999999999999999997 6999998653
No 145
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.98 E-value=9.7e-05 Score=64.91 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
-+|+|||||.+|+-+|..|++.|. +|++++|++
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~ 43 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWP 43 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 359999999999999999999997 699999864
No 146
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=0.00014 Score=62.92 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~ 36 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGL-KTALVEKG 36 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc
Confidence 49999999999999999999996 79999974
No 147
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.95 E-value=3.8e-05 Score=72.10 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=45.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCC---CH----HHHHHHHHcCcEEEeCCcc
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRA---VP----EEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~---~~----~~~~~~~~~gv~~~~~~~~ 130 (183)
+++|+|||||..|+.+|.+|++.|. +|+|+++.... . +|. .. .+++.+.+.||+|+++..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 4679999999999999999999997 69999986432 1 121 11 2345567889999988643
No 148
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.95 E-value=0.00014 Score=61.07 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++.|. +|++++|++.
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCcc
Confidence 569999999999999999999998 6999998753
No 149
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.95 E-value=0.0001 Score=63.15 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=48.5
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCCCH-------HHHHH-HHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRAVP-------EEVQL-AWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~~~-------~~~~~-~~~~gv~~~~~~~~ 130 (183)
..++++|||||..|+++|..|+..|. +|+||++++... +|..+ ..+.. ....++++++.+.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV 201 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEV 201 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeee
Confidence 45679999999999999999999998 699999876421 12110 01111 23456888888888
Q ss_pred eEEEcc
Q psy16200 131 VQVDVK 136 (183)
Q Consensus 131 ~~i~~~ 136 (183)
.++.+.
T Consensus 202 ~ev~G~ 207 (622)
T COG1148 202 EEVSGS 207 (622)
T ss_pred eeeccc
Confidence 887653
No 150
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.95 E-value=6.4e-05 Score=64.21 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=67.2
Q ss_pred EEEEcCChhHHHHH-HHHH----HcCCceEEEEEeecCCcCCCCH---HHHHHHHHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200 72 VIVLGAGDTAFDCA-TSAL----RCGANKVLVVFRKGCTNIRAVP---EEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM 143 (183)
Q Consensus 72 VvViGgG~~g~e~A-~~l~----~~G~~~V~lv~r~~~~~~~~~~---~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v 143 (183)
=+|++.+.+|+|.+ ..+. ++|+ +|+++.+.+.. ++... .....+.+.|+.++++..+.++..+++++..+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~-~V~~vp~~pps-lpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGC-PVFELPTLPPS-VPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCC-CEEEeCCCCCC-CchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 47789999999998 6665 5797 69999765542 33321 11234567899999999999987655555533
Q ss_pred EEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.. ..++...+.+|.||+|+|+.++.
T Consensus 296 ~~-------------~~g~~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 296 WT-------------RNHGDIPLRARHFVLATGSFFSG 320 (422)
T ss_pred Ee-------------eCCceEEEECCEEEEeCCCcccC
Confidence 21 23456689999999999987653
No 151
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=0.00014 Score=62.86 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||..|+.+|..++++|. +|+|+++.+
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~ 37 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGL-ETVCVERYS 37 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 49999999999999999999997 699999853
No 152
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.95 E-value=1.7e-05 Score=68.58 Aligned_cols=62 Identities=26% Similarity=0.276 Sum_probs=44.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CH----HHHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~----~~~~~~~~~gv~~~~~~~~ 130 (183)
.+++|+|||+|..|+.+|.+|++.|. +|+++++.+... .|. .. ...+.+.+.|+++++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 216 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEV 216 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 34679999999999999999999997 699999865320 111 11 1234456778988887654
No 153
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.94 E-value=0.00014 Score=61.21 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcC--CceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.| . +|+|+++++
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCC
Confidence 3999999999999999999985 6 699999864
No 154
>PRK07588 hypothetical protein; Provisional
Probab=97.93 E-value=0.00013 Score=61.27 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCC
Confidence 59999999999999999999998 6999998653
No 155
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.91 E-value=6.5e-05 Score=64.31 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||..|+.+|..|+++|. +|+|+++.+
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~ 36 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSN 36 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCC
Confidence 49999999999999999999996 699999863
No 156
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.90 E-value=0.00022 Score=60.35 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.|+|||||..|+-+|..|++.|. +|.+++++..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCC-eEEEEecCCC
Confidence 39999999999999999999997 6999998543
No 157
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.90 E-value=5.9e-05 Score=70.42 Aligned_cols=59 Identities=25% Similarity=0.234 Sum_probs=42.4
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC---HH----HHHHHHHcCcEEEeCC
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV---PE----EVQLAWEEKCEFLPFM 128 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~---~~----~~~~~~~~gv~~~~~~ 128 (183)
+++|+|||||..|+.+|.+|++.|. +|+|+++++.. ..|.. .+ +++.+...||+|+++.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~ 608 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC 608 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence 3569999999999999999999997 69999986431 01211 11 2334566788888774
No 158
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.90 E-value=8.6e-05 Score=65.59 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=58.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-c------C---CC----CHHH-HH----HHHHcCcEEEeCCcce
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-N------I---RA----VPEE-VQ----LAWEEKCEFLPFMSPV 131 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-~------~---~~----~~~~-~~----~~~~~gv~~~~~~~~~ 131 (183)
.|+|||||..|+.+|.+|++.|. +|+|+++.... . . |. ...+ +. .+...|++++ +..+.
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~-~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 49999999999999999999997 69999975321 0 0 11 1111 11 2345688875 44555
Q ss_pred EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
++..+ +....++. ..+ .+.+|.||+|+|..|..
T Consensus 84 ~i~~~-~~~~~V~~-------------~~g---~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 84 DVDFD-GDIKTIKT-------------ARG---DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEec-CCEEEEEe-------------cCC---EEEEeEEEECCCCccCC
Confidence 55432 22211221 112 47889999999999864
No 159
>PRK05868 hypothetical protein; Validated
Probab=97.89 E-value=0.00015 Score=60.85 Aligned_cols=34 Identities=32% Similarity=0.190 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Confidence 369999999999999999999998 6999998654
No 160
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.89 E-value=3.3e-05 Score=70.50 Aligned_cols=88 Identities=17% Similarity=0.035 Sum_probs=58.5
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCC---CH----HHHHHHHHcCcEEEeCCcceEEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRA---VP----EEVQLAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~---~~----~~~~~~~~~gv~~~~~~~~~~i~ 134 (183)
.+++|+|||||..|+.+|.+|++.|. +|+++++.+.. . .|. .. .+++.+.+.||+|++++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~--- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG--- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC---
Confidence 45679999999999999999999997 69999975321 1 121 11 12345677899998875431
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc-ccc
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS-TLL 180 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~-~p~ 180 (183)
..+ ++. ......+|.||+|+|. .|.
T Consensus 506 ---~~v---~~~---------------~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 506 ---KTI---TIE---------------ELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred ---CcC---CHH---------------HHhhcCCCEEEEeCCCCCCC
Confidence 111 110 1123458999999997 454
No 161
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.88 E-value=0.00015 Score=64.38 Aligned_cols=30 Identities=40% Similarity=0.627 Sum_probs=28.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||||..|+++|..+++.|. +|.+++++
T Consensus 7 VIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~ 36 (618)
T PRK05192 7 VIVVGGGHAGCEAALAAARMGA-KTLLLTHN 36 (618)
T ss_pred EEEECchHHHHHHHHHHHHcCC-cEEEEecc
Confidence 9999999999999999999997 69999986
No 162
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.88 E-value=4.1e-05 Score=65.42 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||.+|+++|..|++.|. +|+|+++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-cEEEEecccc
Confidence 59999999999999999999997 6999998764
No 163
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=0.00029 Score=62.39 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 7 DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~ 37 (566)
T PRK06452 7 DAVVIGGGLAGLMSAHEIASAGF-KVAVISKV 37 (566)
T ss_pred cEEEECccHHHHHHHHHHHHCCC-cEEEEEcc
Confidence 49999999999999999999997 69999864
No 164
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.87 E-value=0.00024 Score=60.03 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+||+|||||..|+-+|..|++.|. +|+++++++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 679999999999999999999998 699999864
No 165
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.87 E-value=2.7e-05 Score=69.86 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=46.2
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCCC---H----HHHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAV---P----EEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~~---~----~~~~~~~~~gv~~~~~~~~ 130 (183)
.+++|+|||+|..|+.+|..|++.|. +|+++++.+... .|.. . .+.+.+.+.|+++++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 35679999999999999999999997 699999876410 1111 1 1334567789999988765
No 166
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.87 E-value=0.00031 Score=62.17 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=27.8
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~-~V~lleK~ 31 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGL-NTAVISKV 31 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence 8999999999999999999997 69999874
No 167
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.87 E-value=0.00019 Score=63.15 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|||||..|+-+|..|+++|. +|+++++++
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence 459999999999999999999998 699999865
No 168
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.86 E-value=0.00032 Score=59.99 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=28.0
Q ss_pred EEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~ 102 (183)
|+|||+|..|+-+|..+++.| + +|+|+++.
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~ 32 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAA-NVVLLEKM 32 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCc-cEEEEecC
Confidence 899999999999999999999 8 69999974
No 169
>PRK09126 hypothetical protein; Provisional
Probab=97.86 E-value=0.00021 Score=59.87 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 37 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL 37 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence 49999999999999999999997 6999998753
No 170
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.86 E-value=0.00019 Score=60.53 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||.+|+-+|..|++.|. +|+|++++
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~ 34 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAGL-DVTLLERA 34 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence 49999999999999999999997 69999997
No 171
>PRK11445 putative oxidoreductase; Provisional
Probab=97.86 E-value=0.00028 Score=58.70 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++. . +|++++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M-KVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C-CEEEEECCC
Confidence 499999999999999999998 7 699999875
No 172
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=0.00034 Score=62.85 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=27.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||+|..|+-+|..+++.|+ +|.|++.
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~-~VilieK 66 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGY-NVKVFCY 66 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEec
Confidence 49999999999999999999998 6999975
No 173
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.83 E-value=4.9e-05 Score=68.34 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=45.2
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCCC-------HHHHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAV-------PEEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~~-------~~~~~~~~~~gv~~~~~~~~ 130 (183)
.+++|+|||||..|+.+|..|++.|. +|+++++..... .|.. ..+++.+.+.|+++++++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v 266 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF 266 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence 34579999999999999999999997 699999865320 1111 12344567788988887653
No 174
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.81 E-value=0.00038 Score=58.98 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|.+++++.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 49999999999999999999997 699999864
No 175
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.81 E-value=0.00029 Score=54.72 Aligned_cols=105 Identities=24% Similarity=0.315 Sum_probs=63.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCC------CHH-----------------------
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRA------VPE----------------------- 112 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~------~~~----------------------- 112 (183)
.|+|||+|..|+-+|.+|++.|. +|.+++++...- ++. ...
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CEEEECCChhHHHHHHHHHHCCC-eEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 49999999999999999999997 699999854210 000 000
Q ss_pred ----HHHHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200 113 ----EVQLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180 (183)
Q Consensus 113 ----~~~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 180 (183)
.+..+.+.|+++.....+..+...+ ++|.++.+.-.-....+. +. -..++.+..||=|+|...+
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl--Hv--DPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL--HV--DPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT----T---B-EEEEESEEEE---SSSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc--CC--CcceEEEeEEEeCCCCchH
Confidence 1122345789999999988876544 789988763210000100 01 1358899999999998754
No 176
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.81 E-value=0.00016 Score=62.14 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||||.-|+.+|..++++|. +|+|+++.
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~-~V~lie~~ 34 (446)
T TIGR01424 5 LFVIGAGSGGVRAARLAANHGA-KVAIAEEP 34 (446)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 9999999999999999999996 69999973
No 177
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.80 E-value=9.3e-05 Score=64.37 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=31.3
Q ss_pred CcceEEEEcCChhHHHHHHHHHH--cCCceEEEEEeecC
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALR--CGANKVLVVFRKGC 104 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~--~G~~~V~lv~r~~~ 104 (183)
.+++|+|||+|..|+.+|..|++ .|. +|+|+++.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC
Confidence 34679999999999999999986 687 6999999764
No 178
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=0.00027 Score=60.79 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+.+|..|+++|. +|.++++..
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~ 37 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEK 37 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEeccc
Confidence 49999999999999999999996 799999753
No 179
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.79 E-value=0.00037 Score=58.67 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||..|+-+|..|++.|. +|.+++++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 39999999999999999999997 69999986
No 180
>PRK14694 putative mercuric reductase; Provisional
Probab=97.79 E-value=0.00038 Score=60.15 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||..|+.+|..|+++|. +|.+|++.
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~ 38 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGA-RVTLIERG 38 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc
Confidence 49999999999999999999997 79999975
No 181
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.78 E-value=3.3e-05 Score=69.42 Aligned_cols=62 Identities=24% Similarity=0.208 Sum_probs=45.0
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCCC---H----HHHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRAV---P----EEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~~---~----~~~~~~~~~gv~~~~~~~~ 130 (183)
.+++|+|||+|..|+.+|.+|++.|. +|+++++.+.. . .|.. . .+++.+.+.|++|++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 35679999999999999999999997 69999986431 0 1211 1 1234456779999887654
No 182
>PRK07190 hypothetical protein; Provisional
Probab=97.78 E-value=0.00036 Score=60.72 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||.+|+-+|..|++.|. +|.++++.+.
T Consensus 7 dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~~ 39 (487)
T PRK07190 7 DVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSDG 39 (487)
T ss_pred eEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCCc
Confidence 49999999999999999999998 6999998653
No 183
>PRK06753 hypothetical protein; Provisional
Probab=97.77 E-value=0.00037 Score=58.05 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence 59999999999999999999998 6999998753
No 184
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.76 E-value=0.00037 Score=60.86 Aligned_cols=32 Identities=38% Similarity=0.394 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||.+|+-+|+.++.+|- +|.|+++.+
T Consensus 14 DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D 45 (532)
T COG0578 14 DVIVIGGGITGAGIARDAAGRGL-KVALVEKGD 45 (532)
T ss_pred CEEEECCchhhHHHHHHHHhCCC-eEEEEecCc
Confidence 49999999999999999999998 699999843
No 185
>PLN02985 squalene monooxygenase
Probab=97.75 E-value=0.0006 Score=59.76 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|++++|..
T Consensus 45 DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 45 DVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred eEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 59999999999999999999996 799999864
No 186
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.75 E-value=0.00024 Score=61.37 Aligned_cols=31 Identities=42% Similarity=0.537 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~ 36 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKK 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 49999999999999999999996 69999974
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.74 E-value=0.00044 Score=59.78 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|.-|+.+|..++++|. +|+|++++
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~ 35 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGL-KVACVEGR 35 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 49999999999999999999996 79999963
No 188
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.74 E-value=5.3e-05 Score=66.96 Aligned_cols=63 Identities=21% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCC-------CHHHHHHHHHcCcEEEeCCcc
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA-------VPEEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~-------~~~~~~~~~~~gv~~~~~~~~ 130 (183)
..+++|+|||+|.+|+.+|..|+++|. +|+++++.+.. ..|. ...+++.+.+.|++++.+..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 345679999999999999999999998 69999875431 0111 122344567788888877543
No 189
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.71 E-value=0.00043 Score=58.41 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 49999999999999999999997 699999875
No 190
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.71 E-value=0.00071 Score=63.67 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=63.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--cC-------CCC-HHH-----HHHHHHc-CcEEEeCCcceEE
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--NI-------RAV-PEE-----VQLAWEE-KCEFLPFMSPVQV 133 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~~-------~~~-~~~-----~~~~~~~-gv~~~~~~~~~~i 133 (183)
.+|+|||||..|+.+|..+++.|. +|+|+++.+.. ++ +.. ..+ .+++... ++.+++++.+..+
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 459999999999999999999997 69999975421 01 111 111 1223333 5999999888777
Q ss_pred EccCCcEEEEEEEEeeecCCCCeec--CCCceEEEECCEEEEcccccccC
Q psy16200 134 DVKDNKIAGMQFNRTEQNEKGEWVE--DEEQRIKLKANYIISAFGSTLLD 181 (183)
Q Consensus 134 ~~~~~~v~~v~~~~~~~~~~~~~~~--~~g~~~~i~~D~Vi~a~G~~p~~ 181 (183)
.. ++.+..+. +.. +.-..... ..+....+.+|.||+|+|..|..
T Consensus 243 ~~-~~~v~~v~--~~~-~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD-HNTVGALE--RVT-DHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec-CCeEEEEE--Eee-eccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 33332121 110 00000000 01122368999999999987653
No 191
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.70 E-value=0.00047 Score=57.56 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEEcCChhHHHHHHHHHHcC-CceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~~ 104 (183)
|+|||||..|+-+|..|++.| . +|+++++.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKI-KIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCc-eEEEEeCCCc
Confidence 899999999999999999999 8 6999998653
No 192
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.69 E-value=0.00053 Score=57.07 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=29.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
|+|||||..|+-+|..|++.|. +|++++|++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 8999999999999999999997 7999999753
No 193
>PRK07045 putative monooxygenase; Reviewed
Probab=97.69 E-value=0.00085 Score=56.31 Aligned_cols=33 Identities=27% Similarity=0.217 Sum_probs=30.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus 7 ~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07045 7 DVLINGSGIAGVALAHLLGARGH-SVTVVERAAR 39 (388)
T ss_pred EEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCc
Confidence 59999999999999999999998 6999998764
No 194
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.68 E-value=0.00069 Score=61.10 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 7 DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~ 37 (657)
T PRK08626 7 DALVIGAGLAGLRVAIAAAQRGL-DTIVLSLV 37 (657)
T ss_pred cEEEECccHHHHHHHHHHHHcCC-CEEEEeCC
Confidence 39999999999999999999998 69999863
No 195
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00068 Score=55.57 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=26.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+|+|||||..|+-+|.++.+.+.+.+.|++.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~ 35 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEG 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 4999999999999999999999743555554
No 196
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.68 E-value=0.00056 Score=57.40 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus 7 dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 38 (391)
T PRK08020 7 DIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA 38 (391)
T ss_pred cEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 49999999999999999999997 699999864
No 197
>PRK06116 glutathione reductase; Validated
Probab=97.68 E-value=0.00032 Score=60.22 Aligned_cols=31 Identities=35% Similarity=0.497 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~-~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGA-KVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 49999999999999999999996 79999974
No 198
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.67 E-value=0.00092 Score=59.76 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++. |+ +|.|+++.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~ 45 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKA 45 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECC
Confidence 499999999999999999998 87 69999974
No 199
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.66 E-value=0.00074 Score=57.69 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcC--CceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~ 103 (183)
.|+|||||-+|+-+|..|.++. . +|+|+++..
T Consensus 5 DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~ 38 (429)
T COG0579 5 DVVIIGGGIMGAATAYELSEYEPDL-SVALLEKED 38 (429)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccC
Confidence 3999999999999999999997 5 799999843
No 200
>PRK07121 hypothetical protein; Validated
Probab=97.65 E-value=0.00061 Score=59.23 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~ 53 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGA-RVLVLERAA 53 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 49999999999999999999998 699999743
No 201
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.65 E-value=0.00068 Score=56.72 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 59999999999999999999997 7999998754
No 202
>PRK06370 mercuric reductase; Validated
Probab=97.64 E-value=0.00047 Score=59.43 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~ 37 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGM-KVALIERG 37 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 49999999999999999999997 79999975
No 203
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.64 E-value=0.00042 Score=60.92 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=26.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
|||+|||||..|+-.|..|.+.|. +|+++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCC
Confidence 679999999999999999999998 699999854
No 204
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.64 E-value=0.00095 Score=56.32 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence 459999999999999999999998 6999999764
No 205
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.63 E-value=0.00019 Score=61.89 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.-|+.+|..+++.|. +|+++++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence 69999999999999999999996 699999853
No 206
>PRK13748 putative mercuric reductase; Provisional
Probab=97.62 E-value=0.00089 Score=59.04 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+.+|..|+++|. +|.||++.
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGA-RVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 59999999999999999999996 79999975
No 207
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.62 E-value=0.00092 Score=57.33 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=26.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+. .|+ +|.|+++.
T Consensus 6 DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~ 35 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLR-KDL-KILMVSKG 35 (433)
T ss_pred cEEEECchHHHHHHHHHhc-cCC-CEEEEecC
Confidence 3999999999999999874 687 69999874
No 208
>PRK13984 putative oxidoreductase; Provisional
Probab=97.61 E-value=0.00017 Score=64.28 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=57.1
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCCC-------HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRAV-------PEEVQLAWEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~~-------~~~~~~~~~~gv~~~~~~~~~~i~ 134 (183)
.+++|+|||+|..|+.+|..|.++|. +|+++++.... . ++.. ...+..+.+.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC--
Confidence 34569999999999999999999997 69999876431 0 1111 1223456778899888765421
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
+ +.+ . .....+|.||+|+|..
T Consensus 359 ---~----~~~--------------~--~~~~~yD~vilAtGa~ 379 (604)
T PRK13984 359 ---D----IPL--------------E--ELREKHDAVFLSTGFT 379 (604)
T ss_pred ---c----CCH--------------H--HHHhcCCEEEEEcCcC
Confidence 0 001 0 1124689999999975
No 209
>PRK06996 hypothetical protein; Provisional
Probab=97.61 E-value=0.00068 Score=57.25 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC---ceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGA---NKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~---~~V~lv~r~~ 103 (183)
.+|+|||||..|+-+|..|++.|. .+|+++++.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 359999999999999999999872 2699999864
No 210
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.61 E-value=0.00055 Score=58.93 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+.+|..++++|. +|+|+++.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~ 34 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGA-KALLVEAK 34 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEeccc
Confidence 39999999999999999999997 69999974
No 211
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.60 E-value=0.00084 Score=56.39 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 49999999999999999999998 699999764
No 212
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.60 E-value=0.0008 Score=56.37 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGI-KTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCC-eEEEecCC
Confidence 49999999999999999999997 69999975
No 213
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.60 E-value=0.0013 Score=58.79 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC-CEEEEEecC
Confidence 6899999999999999999998 699999754
No 214
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=0.0011 Score=58.87 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcC--CceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~ 102 (183)
.|+|||||..|+-+|..+++.| + +|+|+++.
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g~-~V~vleK~ 37 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPSL-DVAVVAKT 37 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCCC-cEEEEecc
Confidence 3999999999999999999875 5 69999974
No 215
>PRK08013 oxidoreductase; Provisional
Probab=97.60 E-value=0.00091 Score=56.52 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCC
Confidence 49999999999999999999997 6999998764
No 216
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.58 E-value=0.0012 Score=59.27 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~ 40 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGL-RVAVVCKS 40 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCC-CEEEEecc
Confidence 49999999999999999999998 69999874
No 217
>PRK14727 putative mercuric reductase; Provisional
Probab=97.57 E-value=0.0015 Score=56.73 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=29.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
-+|+|||+|..|..+|..|+++|. +|+++++.
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~ 48 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGA 48 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc
Confidence 459999999999999999999996 79999975
No 218
>PLN02661 Putative thiazole synthesis
Probab=97.56 E-value=0.0016 Score=54.35 Aligned_cols=104 Identities=16% Similarity=0.268 Sum_probs=65.8
Q ss_pred eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecCCc---------CCCC------HH----------------------
Q psy16200 71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTN---------IRAV------PE---------------------- 112 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~~~---------~~~~------~~---------------------- 112 (183)
+|+|||||..|+-+|..|++. |. +|+++++..... +... ..
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 599999999999999999976 65 799999854210 0000 00
Q ss_pred -----HHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC---ceEEEECCEEEEcccccc
Q psy16200 113 -----EVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE---QRIKLKANYIISAFGSTL 179 (183)
Q Consensus 113 -----~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g---~~~~i~~D~Vi~a~G~~p 179 (183)
.+.++ .+.|++++.++.+.++..+++++.++.+.-.....+ ...+ ....+.++.||+|+|-.+
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~----~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQN----HDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhc----cCCCCccceeEEECCEEEEcCCCCC
Confidence 01112 235788888888888776667787776421000000 0111 234789999999999654
No 219
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.56 E-value=0.0017 Score=58.24 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||.+|+-+|..|+++|. +|+||++.
T Consensus 73 DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~ 103 (627)
T PLN02464 73 DVLVVGGGATGAGVALDAATRGL-RVGLVERE 103 (627)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence 49999999999999999999998 69999984
No 220
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.56 E-value=0.0013 Score=55.19 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=28.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus 2 viIiGaG~AGl~~A~~la~~g~-~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGL-RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence 8999999999999999999997 699999864
No 221
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.55 E-value=0.00042 Score=59.71 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||||..|+.+|..++++|. +|+|+++.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~-~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGA-SVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 8999999999999999999996 79999974
No 222
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.55 E-value=0.0014 Score=58.17 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcC---CceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG---ANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G---~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.| + +|+|+++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcc
Confidence 3999999999999999999998 6 69999973
No 223
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.54 E-value=0.0011 Score=56.10 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||..|+-+|..|++.|. +|++++++
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~ 36 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKESDL-RIAVIEGQ 36 (405)
T ss_pred CEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 59999999999999999999997 69999985
No 224
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.54 E-value=0.0015 Score=56.44 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|.+++++.
T Consensus 41 DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~ 72 (450)
T PLN00093 41 RVAVIGGGPAGACAAETLAKGGI-ETFLIERKL 72 (450)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 59999999999999999999998 699999864
No 225
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.54 E-value=0.0017 Score=58.12 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGY-KTACISKL 61 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEecc
Confidence 49999999999999999999998 69999873
No 226
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.52 E-value=0.0018 Score=57.85 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 14 DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~ 44 (598)
T PRK09078 14 DVVVVGAGGAGLRATLGMAEAGL-KTACITKV 44 (598)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEEcc
Confidence 49999999999999999999997 69999764
No 227
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.51 E-value=0.0019 Score=56.20 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=27.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.| . |+|+++.
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G-~-V~lleK~ 33 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG-R-VIVLSKA 33 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC-C-EEEEEcc
Confidence 3999999999999999999998 4 9999875
No 228
>PRK07538 hypothetical protein; Provisional
Probab=97.50 E-value=0.0015 Score=55.39 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCC
Confidence 49999999999999999999998 699999865
No 229
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.50 E-value=0.0018 Score=57.13 Aligned_cols=30 Identities=27% Similarity=0.508 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+ +.|+ +|.|+++.
T Consensus 9 DVlVVG~G~AGl~AAi~A-~~G~-~VilleK~ 38 (543)
T PRK06263 9 DVLIIGSGGAGARAAIEA-ERGK-NVVIVSKG 38 (543)
T ss_pred CEEEECccHHHHHHHHHH-hcCC-CEEEEEcc
Confidence 499999999999999999 8897 69999984
No 230
>PRK08275 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.0026 Score=56.20 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.0
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++. |+ +|.|+++.+
T Consensus 11 DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~ 44 (554)
T PRK08275 11 DILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKAN 44 (554)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 499999999999999999987 56 799999754
No 231
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.49 E-value=0.0025 Score=55.69 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||.+|+-+|..|+++|. +|.|+++.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d 39 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRGL-KVLLCEKDD 39 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-cEEEEECCC
Confidence 49999999999999999999997 699999863
No 232
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.48 E-value=0.00094 Score=56.66 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=27.2
Q ss_pred EEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 73 IVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 73 vViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|||||..|+-+|..+++.|. +|+|+++.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~-~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCC-cEEEEecCc
Confidence 589999999999999999997 699999854
No 233
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.47 E-value=0.00036 Score=64.85 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
..++||+|||+|..|+.+|.+|++.|. +|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence 355679999999999999999999997 69999975
No 234
>KOG1399|consensus
Probab=97.46 E-value=0.0016 Score=56.01 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=31.3
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
..++|+|||+|.+|+-.|+.|.+.|. +|++++|.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCC-CceEEEecC
Confidence 34679999999999999999999997 699999854
No 235
>PLN02507 glutathione reductase
Probab=97.45 E-value=0.00062 Score=59.44 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||||..|+-+|..++++|. +|.||++
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~-~V~liE~ 56 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGA-KVGICEL 56 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 49999999999999999999996 7999995
No 236
>PLN02697 lycopene epsilon cyclase
Probab=97.45 E-value=0.0021 Score=56.59 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+-+|..|++.|. +|.++++.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~~ 140 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPD 140 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-cEEEecCc
Confidence 49999999999999999999997 69999864
No 237
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.0029 Score=56.38 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 9 DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~ 39 (588)
T PRK08958 9 DAVVIGAGGAGMRAALQISQSGQ-SCALLSKV 39 (588)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEEcc
Confidence 49999999999999999999998 69999974
No 238
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.42 E-value=0.0031 Score=54.34 Aligned_cols=152 Identities=13% Similarity=0.063 Sum_probs=83.9
Q ss_pred CCCCEEEEccCCCCCcccCCC-C-CCccCCCceehhhhHHHHhccccCCccCCCCC----CCCCCCcceEEEE---cCCh
Q psy16200 9 DGYTAIFIGIGKPNANVIPIF-Q-GLTEEMGFYTSKTFLPRVATSSKKGLCGGCKK----ESLPILKGTVIVL---GAGD 79 (183)
Q Consensus 9 ~~~davviATGa~~p~~l~i~-g-g~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~VvVi---GgG~ 79 (183)
...-++|+|||- .+....-. + |.--+++|++..++-+..+.. | +..+ ++.-..+++|+.| |.-+
T Consensus 299 ~~vGaIIvAtGy-~~~Da~~k~EyGYG~~~nVIT~lElErml~~~---G---PT~GkvlrpSdg~~pKrVaFIqCVGSRD 371 (622)
T COG1148 299 LEVGAIIVATGY-KPFDATRKEEYGYGKYPNVITNLELERMLNPN---G---PTGGKVLRPSDGKPPKRVAFIQCVGSRD 371 (622)
T ss_pred EEeceEEEEccc-cccCcchhhhcCCCCCcchhhHHHHHHHhccC---C---CCCceEEecCCCCCCceEEEEEEecCcC
Confidence 346789999995 44433211 0 222357899999887765421 0 0010 0112356787776 6655
Q ss_pred --------hHHHHHHHHH------Hc--CCceEEEEEeecCCcCCCCHHHHHHHH-HcCcEEEeCCcceEEEc-cCCcEE
Q psy16200 80 --------TAFDCATSAL------RC--GANKVLVVFRKGCTNIRAVPEEVQLAW-EEKCEFLPFMSPVQVDV-KDNKIA 141 (183)
Q Consensus 80 --------~g~e~A~~l~------~~--G~~~V~lv~r~~~~~~~~~~~~~~~~~-~~gv~~~~~~~~~~i~~-~~~~v~ 141 (183)
+..=|...|. ++ .+ +|++.+..-+..-....+.+.+.+ +.||.|+.+ ++.+|.. .++++.
T Consensus 372 ~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~-~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~ 449 (622)
T COG1148 372 FQVGNPYCSRVCCMVSLKQAQLIKERYPDT-DVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLI 449 (622)
T ss_pred cccCChhhHHHHHHHHHhhhhhhhhcCCCc-ceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeE
Confidence 1111222221 11 23 588888653321112233344444 779999877 4445543 344443
Q ss_pred EEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200 142 GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180 (183)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 180 (183)
|+..++ ..|...++++|+|++++|..|.
T Consensus 450 -V~~EdT----------l~g~~~e~~~DLVVLa~Gmep~ 477 (622)
T COG1148 450 -VRVEDT----------LTGEVKEIEADLVVLATGMEPS 477 (622)
T ss_pred -EEEEec----------cCccceecccceEEEeeccccC
Confidence 555432 3567789999999999999984
No 239
>PRK09897 hypothetical protein; Provisional
Probab=97.42 E-value=0.0026 Score=56.02 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~ 103 (183)
++|+|||||..|+-+|..|++.+.. +|+|++++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 3699999999999999999886531 699999854
No 240
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.42 E-value=0.0012 Score=56.75 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+|+|||||..|+.+|..|+++|. +|+++++
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~-~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGL-KVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence 39999999999999999999997 7999997
No 241
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.41 E-value=0.0024 Score=53.54 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 59999999999999999999997 699999875
No 242
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.41 E-value=0.0023 Score=57.03 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=28.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||||..|+++|..+++.|. +|.++++.
T Consensus 3 ViVIGaG~AGl~aA~ala~~G~-~v~Lie~~ 32 (617)
T TIGR00136 3 VIVIGGGHAGCEAALAAARMGA-KTLLLTLN 32 (617)
T ss_pred EEEECccHHHHHHHHHHHHCCC-CEEEEecc
Confidence 8999999999999999999997 69999975
No 243
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.41 E-value=0.0021 Score=55.65 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus 3 DVvVVGaG~AGl~AAi~aae~G~-~V~liek~ 33 (466)
T PRK08401 3 KVGIVGGGLAGLTAAISLAKKGF-DVTIIGPG 33 (466)
T ss_pred eEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 49999999999999999999997 69999974
No 244
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.39 E-value=0.0024 Score=53.45 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHc---CCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRC---GANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~---G~~~V~lv~r~ 102 (183)
+|+|||||..|+-+|..|+++ |. +|+|++|.
T Consensus 5 dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~ 38 (395)
T PRK05732 5 DVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF 38 (395)
T ss_pred CEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence 499999999999999999998 98 69999984
No 245
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.37 E-value=0.0035 Score=56.38 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.|++..
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~ 82 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 82 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCC-cEEEEEcC
Confidence 49999999999999999999998 69999874
No 246
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0038 Score=53.79 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
-+|+|||||..|+-+|..|.+.|...+.+++++.
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 3599999999999999999999974499999864
No 247
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.37 E-value=0.0026 Score=55.34 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||+|..|..+|..++++|. +|.+|++
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~-~v~lie~ 33 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGA-KVMLLDF 33 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 39999999999999999999996 7999996
No 248
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.36 E-value=0.0044 Score=55.28 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|+|++..
T Consensus 14 DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~ 44 (591)
T PRK07057 14 DVVIVGAGGSGMRASLQLARAGL-SVAVLSKV 44 (591)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence 49999999999999999999997 69999974
No 249
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.35 E-value=0.0026 Score=54.96 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=25.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcC---CceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG---ANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G---~~~V~lv~r~ 102 (183)
+|+|||||..|.-+|..|++.+ . +|++|++.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~-~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDAL-SVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSS-EEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCc-EEEEEecC
Confidence 5999999999999999999998 5 69999974
No 250
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.35 E-value=0.0042 Score=55.27 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=27.1
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++. |. +|.|+++.
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~ 37 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHL-DVALISKV 37 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCC-cEEEEEcc
Confidence 399999999999999999887 45 69999974
No 251
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.34 E-value=0.0041 Score=54.88 Aligned_cols=32 Identities=38% Similarity=0.603 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++..
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~ 49 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAGR-RVLVVTKAA 49 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-eEEEEEccC
Confidence 49999999999999999999997 699999744
No 252
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.33 E-value=0.00074 Score=57.92 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=29.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|-+|+.+|..|++.|. +|+++.+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3669999999999999999999997 69999765
No 253
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.33 E-value=0.004 Score=55.42 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcC--CceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.| + +|+|+++.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNL-KIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCC-cEEEEEcc
Confidence 3999999999999999999875 5 69999974
No 254
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.33 E-value=0.0033 Score=55.05 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++ |+ +|.|+++.+
T Consensus 5 DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~ 35 (510)
T PRK08071 5 DVIIIGSGIAALTVAKELCH-EY-NVIIITKKT 35 (510)
T ss_pred CEEEECccHHHHHHHHHhhc-CC-CEEEEeccC
Confidence 49999999999999999976 87 699998743
No 255
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.29 E-value=0.0044 Score=55.02 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=27.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+| .|+.+|..+++.|+ +|.|+++.
T Consensus 18 DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~ 47 (564)
T PRK12845 18 DLLVVGSG-TGMAAALAAHELGL-SVLIVEKS 47 (564)
T ss_pred CEEEECCc-HHHHHHHHHHHCCC-cEEEEecC
Confidence 49999999 79999999999998 69999974
No 256
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.29 E-value=0.0029 Score=56.00 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++ |+ +|.|+++.+
T Consensus 11 DVlVVG~G~AGl~AAi~A~~-G~-~V~lieK~~ 41 (553)
T PRK07395 11 DVLVVGSGAAGLYAALCLPS-HL-RVGLITKDT 41 (553)
T ss_pred CEEEECccHHHHHHHHHhhc-CC-CEEEEEccC
Confidence 49999999999999999864 87 699999743
No 257
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.28 E-value=0.00044 Score=61.35 Aligned_cols=99 Identities=9% Similarity=-0.003 Sum_probs=68.9
Q ss_pred CcceEEEEcCCh--hHHHHHHHHHHcCCceEEEEEeecCCcCCC--------------CHH-----HHHHHHHcCcEEEe
Q psy16200 68 LKGTVIVLGAGD--TAFDCATSALRCGANKVLVVFRKGCTNIRA--------------VPE-----EVQLAWEEKCEFLP 126 (183)
Q Consensus 68 ~~~~VvViGgG~--~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~--------------~~~-----~~~~~~~~gv~~~~ 126 (183)
.++++.|+|+++ ++.+.+.++...+. .++++.+.... .+. ... ....+.+.|+++++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~ 233 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRS-LTSFIYVAKRL-ATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT 233 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccc-hhHHHHHHHHH-HhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence 446788999999 89999999988886 47766543211 100 111 12345678999999
Q ss_pred CCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECC-EEEEccccccc
Q psy16200 127 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKAN-YIISAFGSTLL 180 (183)
Q Consensus 127 ~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~ 180 (183)
++.+.++..++++++++.+.. .+....+.++ .||+|+|..++
T Consensus 234 ~~~v~~l~~~~g~V~GV~~~~------------~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 234 GTPARELLTEGGRVVGARVID------------AGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCEEEEEEeeCCEEEEEEEEc------------CCceEEEEeCCEEEEcCCCccc
Confidence 999999876677888877631 2234567786 89999998764
No 258
>KOG1298|consensus
Probab=97.26 E-value=0.0021 Score=53.93 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|-.|.-+|..|++.|. +|++++|.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGR-RVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCc-EEEEEecc
Confidence 39999999999999999999995 79999985
No 259
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.00097 Score=58.14 Aligned_cols=30 Identities=40% Similarity=0.608 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||||-.|+|+|..++++|+ ++.|++.
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~-ktlLlT~ 35 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGA-KTLLLTL 35 (621)
T ss_pred ceEEECCCccchHHHHhhhccCC-eEEEEEc
Confidence 39999999999999999999998 5888875
No 260
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.22 E-value=0.00062 Score=43.19 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.6
Q ss_pred EEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 74 VLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 74 ViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
|||||..|+-+|..|++.|. +|+|+++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence 89999999999999999987 7999998764
No 261
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.19 E-value=0.00049 Score=58.76 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|+|||||.+|+++|..|++.|. +|+|+++++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCc
Confidence 459999999999999999999997 6999998654
No 262
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.18 E-value=0.0075 Score=53.81 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=27.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK 34 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGV-HVDLFSL 34 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCC-cEEEEEc
Confidence 49999999999999999999998 6999995
No 263
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.15 E-value=0.0068 Score=54.01 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~ 44 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGL-DTLVVEKSA 44 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEEcCC
Confidence 49999999999999999999997 699999743
No 264
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.14 E-value=0.0068 Score=52.53 Aligned_cols=30 Identities=33% Similarity=0.466 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||||..|+.+|..+++.|. +|.++++
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g~-~v~lie~ 35 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLGL-KVACIEA 35 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence 49999999999999999999996 7999997
No 265
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.13 E-value=0.00092 Score=58.35 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||||..|+.+|..++++|. +|.||++
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~-~V~lie~ 36 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGK-KVALFDY 36 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence 49999999999999999999996 7999995
No 266
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.13 E-value=0.0098 Score=52.99 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++. + +|.|+++.
T Consensus 7 DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~ 36 (583)
T PRK08205 7 DVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKL 36 (583)
T ss_pred cEEEECccHHHHHHHHHHHhC-C-CEEEEeCC
Confidence 399999999999999999875 6 69999973
No 267
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.11 E-value=0.0064 Score=53.30 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
-.|+|||+|..|+-+|..++ +. +|.|+++.+
T Consensus 10 ~DVlVIG~G~AGl~AAl~Aa--~~-~V~lleK~~ 40 (513)
T PRK07512 10 GRPVIVGGGLAGLMAALKLA--PR-PVVVLSPAP 40 (513)
T ss_pred CCEEEECchHHHHHHHHHhC--cC-CEEEEECCC
Confidence 45999999999999999886 55 699998754
No 268
>PLN02815 L-aspartate oxidase
Probab=97.08 E-value=0.0088 Score=53.44 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.| + |.|+++..
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~ 61 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-T-VAIITKDE 61 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-C-EEEEECCC
Confidence 4999999999999999999998 4 99998743
No 269
>PLN02546 glutathione reductase
Probab=97.07 E-value=0.0037 Score=55.38 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||+|.-|+.+|..++++|. +|.|+++
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~-~V~liE~ 110 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGA-SAAVCEL 110 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 49999999999999999999997 7999995
No 270
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.07 E-value=0.0094 Score=53.65 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~ 104 (183)
+|+|||||.+|+-+|..|+++ |. +|.|+++++.
T Consensus 34 dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~ 67 (634)
T PRK08294 34 DVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG 67 (634)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence 499999999999999999995 98 6999998753
No 271
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.06 E-value=0.0053 Score=53.04 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=29.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|||+|.-|.-+|..++++|.+ |.+++++.
T Consensus 7 vvVIG~GpaG~~aA~raa~~G~k-valvE~~~ 37 (454)
T COG1249 7 VVVIGAGPAGYVAAIRAAQLGLK-VALVEKGE 37 (454)
T ss_pred EEEECCCHHHHHHHHHHHhCCCC-EEEEeecC
Confidence 99999999999999999999986 99999973
No 272
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.05 E-value=0.02 Score=51.07 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
-+|+|||+|..|+-+|..+++.|. +|.|+++.
T Consensus 13 ~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~ 44 (581)
T PRK06134 13 CDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKD 44 (581)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 359999999999999999999997 69999974
No 273
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.05 E-value=0.0011 Score=58.74 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=65.0
Q ss_pred CcceEEEEcCChhHHHHHHH-------HHHcCCceEEEEEeecCCcCCCCHH----HHHHHHHcCcEEEeCCcceEEEcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATS-------ALRCGANKVLVVFRKGCTNIRAVPE----EVQLAWEEKCEFLPFMSPVQVDVK 136 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~-------l~~~G~~~V~lv~r~~~~~~~~~~~----~~~~~~~~gv~~~~~~~~~~i~~~ 136 (183)
.++..+++|+++++++.+.. +++.|+ +|+++..+.......... ....+++.|+++++++.+.++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGA-RTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHH-HHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence 34557899999999998865 667776 477655432211111111 123456779999999999998766
Q ss_pred CCcEEEEEEEEeeecCCCCeecCCCceEEEECC-EEEEcccc
Q psy16200 137 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKAN-YIISAFGS 177 (183)
Q Consensus 137 ~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D-~Vi~a~G~ 177 (183)
+++|.++.+. .+++...+.++ .||+|+|-
T Consensus 238 ~g~v~Gv~~~------------~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 238 DGRVTGVHAA------------ESGEPQLIRARRGVILASGG 267 (557)
T ss_pred CCEEEEEEEE------------eCCcEEEEEeceeEEEccCC
Confidence 6788888763 24556788885 68886654
No 274
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.02 E-value=0.0086 Score=52.21 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=27.1
Q ss_pred EEEEcCChhHHHHHHHHHHc-CCceEEEEEe
Q psy16200 72 VIVLGAGDTAFDCATSALRC-GANKVLVVFR 101 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r 101 (183)
|+|||||.-|..+|..++++ |. +|.||++
T Consensus 6 viVIG~G~~G~~aA~~aa~~~g~-~V~lie~ 35 (486)
T TIGR01423 6 LVVIGAGSGGLEAGWNAATLYKK-RVAVIDV 35 (486)
T ss_pred EEEECCChHHHHHHHHHHHhcCC-EEEEEec
Confidence 99999999999999999996 76 7999996
No 275
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.01 E-value=0.0089 Score=50.22 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=28.3
Q ss_pred EEEEcCChhHHHHHHHH--HHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSA--LRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l--~~~G~~~V~lv~r~~~ 104 (183)
|+|||||..|+-+|..| ++.|. +|.+|++...
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~ 35 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPK 35 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCcc
Confidence 89999999999999999 77886 7999987643
No 276
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.99 E-value=0.017 Score=51.88 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=26.9
Q ss_pred EEEEcCChhHHHHHHHHH----HcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSAL----RCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~----~~G~~~V~lv~r~ 102 (183)
|+|||+|..|+-+|..++ +.|+ +|.|+++.
T Consensus 2 VlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~ 35 (614)
T TIGR02061 2 LLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKA 35 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEcc
Confidence 899999999999999998 6787 69999873
No 277
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.99 E-value=0.0084 Score=51.26 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=26.2
Q ss_pred EEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 74 VLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 74 ViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
|||+|..|+-+|..+++.|+ +|.++++.+
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga-~V~vlEK~~ 29 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA-SVLLLEAAP 29 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence 79999999999999999997 699999854
No 278
>KOG0029|consensus
Probab=96.99 E-value=0.00099 Score=58.19 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=31.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|+|||||..|+-+|+.|.++|. +|++++-|++
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCC
Confidence 469999999999999999999998 6999998765
No 279
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.98 E-value=0.014 Score=54.57 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+-+|..+++.|. +|.|+++.
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~ 45 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGA-NVLLLEKA 45 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 49999999999999999999997 69999864
No 280
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.96 E-value=0.0011 Score=56.00 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|++.|. +|++++|..
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 69999999999999999999996 799999864
No 281
>KOG1336|consensus
Probab=96.93 E-value=0.007 Score=51.92 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=63.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCcCCCCHHH----------------HHHHHHcCcEEEeCCcceE
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTNIRAVPEE----------------VQLAWEEKCEFLPFMSPVQ 132 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~~~~~~~~----------------~~~~~~~gv~~~~~~~~~~ 132 (183)
..++|+|||..|.=++.++.+.|- ...+++.++.. .|..+.. -+..++.||++++++.+++
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~--~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL--LPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEecccc--CcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence 459999999999999999988762 35788876532 3332211 1234678999999999888
Q ss_pred EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+.-....| .+ ++.+.++.|.+++|+|..|+..
T Consensus 153 ~D~~~K~l---~~---------------~~Ge~~kys~LilATGs~~~~l 184 (478)
T KOG1336|consen 153 ADLASKTL---VL---------------GNGETLKYSKLIIATGSSAKTL 184 (478)
T ss_pred eeccccEE---Ee---------------CCCceeecceEEEeecCccccC
Confidence 75432222 22 2345889999999999966543
No 282
>KOG2404|consensus
Probab=96.92 E-value=0.0073 Score=49.80 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=38.3
Q ss_pred cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 122 CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 122 v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
+.+..++.+..|...+++|.+|++.+ ..|+...+-.|.||+|+|--.
T Consensus 160 ~ki~~nskvv~il~n~gkVsgVeymd-----------~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNGKVSGVEYMD-----------ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HhhhhcceeeeeecCCCeEEEEEEEc-----------CCCCccceecCceEEecCCcC
Confidence 57888999999987788999998853 467777888999999998544
No 283
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.89 E-value=0.017 Score=55.42 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|+ +|.++++.
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~ 441 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGA-QVILLEKE 441 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEcc
Confidence 49999999999999999999998 69999974
No 284
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.86 E-value=0.019 Score=50.58 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++. + +|.|+++..
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~ 40 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGP 40 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-C-CEEEEeccC
Confidence 499999999999999999886 6 699998743
No 285
>KOG0399|consensus
Probab=96.83 E-value=0.0048 Score=58.07 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=48.5
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CH----HHHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~----~~~~~~~~~gv~~~~~~~~ 130 (183)
-+++|+|||.|..|+-+|..|.+.|. .|++-+|+++.. .|. .. ..++.+.++||.|.+|+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~ei 1858 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEI 1858 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccc
Confidence 45679999999999999999999996 799999987621 122 21 2344568899999999776
No 286
>PRK07233 hypothetical protein; Provisional
Probab=96.81 E-value=0.0017 Score=54.86 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
||+|||||..|+-+|..|++.|. +|+|++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCC
Confidence 58999999999999999999996 6999998764
No 287
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.76 E-value=0.0045 Score=47.89 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=28.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+++|+|||||.+|.--+..|.+.|+ +|+++.+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp 40 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGA-QLRVIAE 40 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 4569999999999999999999998 6999964
No 288
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.76 E-value=0.002 Score=54.92 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~ 104 (183)
++|+|||||..|+-+|..|++.| . +|+|++.+++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~ 36 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDR 36 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCC
Confidence 36999999999999999999987 5 6999997553
No 289
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.75 E-value=0.0047 Score=53.39 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=47.5
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCCC-------HHHHHHHHHcCcEEEeCCcc
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAV-------PEEVQLAWEEKCEFLPFMSP 130 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~~-------~~~~~~~~~~gv~~~~~~~~ 130 (183)
.+++|+|||+|.-|+.+|..|++.|. .|+++++.+..- .|.. +.+++.+.+.|++|+.+..+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 34679999999999999999999997 799998865420 1211 23455678899999988765
No 290
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.73 E-value=0.0022 Score=53.47 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|++.|. +|+|+++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 38999999999999999999996 699999853
No 291
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.69 E-value=0.0024 Score=53.14 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|++.|. +|+|++++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 49999999999999999999996 799999864
No 292
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.68 E-value=0.0016 Score=44.74 Aligned_cols=33 Identities=36% Similarity=0.416 Sum_probs=28.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|||||.+|..-+..|.+.|+ +|+++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGA-KVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCc
Confidence 3569999999999999999999998 79999754
No 293
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.63 E-value=0.015 Score=50.20 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.|+|||+|..|+-+|..|.+. . +|+++.+.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~-~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-F-RVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-C-cEEEEeCCCC
Confidence 599999999999999999987 4 6999998654
No 294
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.61 E-value=0.0046 Score=44.48 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=31.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++++|||+|-+|-.++..|...|+++|+++.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4669999999999999999999999889999875
No 295
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.55 E-value=0.0033 Score=53.09 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 59999999999999999999996 79999985
No 296
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.54 E-value=0.0054 Score=53.39 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.3
Q ss_pred CcceEEEEcCChhHHHHHHHHH-HcCCceEEEEEeecC
Q psy16200 68 LKGTVIVLGAGDTAFDCATSAL-RCGANKVLVVFRKGC 104 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~-~~G~~~V~lv~r~~~ 104 (183)
.++||+|||+|..|+.+|..|+ +.|. +|+|+++.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 4567999999999999999764 6686 6999999765
No 297
>KOG2852|consensus
Probab=96.54 E-value=0.0076 Score=48.92 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-----CceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCG-----ANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G-----~~~V~lv~r~ 102 (183)
++|+|+|||.+|+-+|.+|++++ --.++|++.+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 66999999999999999999886 1269999874
No 298
>PLN02268 probable polyamine oxidase
Probab=96.49 E-value=0.0039 Score=53.14 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|.+.|. +|+|++.+++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASF-KVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence 59999999999999999999996 6999996543
No 299
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.48 E-value=0.0039 Score=51.76 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||||.+|+-+|..|++.|. +|+++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 38999999999999999999996 69999974
No 300
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.46 E-value=0.02 Score=48.10 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=28.0
Q ss_pred EEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200 72 VIVLGAGDTAFDCATSALRC--GANKVLVVFRKG 103 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~ 103 (183)
|+|||||..|+.+|..|++. |. +|.++++++
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~ 34 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGR 34 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence 89999999999999999986 86 699999865
No 301
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.45 E-value=0.005 Score=51.28 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=29.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|||||.+|+-+|..|++.|. +|+++++..
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCc
Confidence 459999999999999999999997 799999743
No 302
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.42 E-value=0.0057 Score=45.28 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=27.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVF 100 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~ 100 (183)
+++|+|||||.+|..-+..|.+.|+ +|++|.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 3569999999999999999999998 699994
No 303
>KOG2311|consensus
Probab=96.41 E-value=0.016 Score=50.11 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=26.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||||-.|+|+|..+++.|+ +.+|++.
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga-~TlLlT~ 59 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGA-RTLLLTH 59 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCC-ceEEeec
Confidence 49999999999999999999998 5777765
No 304
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.40 E-value=0.0044 Score=52.22 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|+++ |. +|+|+++..
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 499999999999999999998 86 799999863
No 305
>PRK07208 hypothetical protein; Provisional
Probab=96.35 E-value=0.0052 Score=53.04 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|+|||||.+|+-+|..|.+.|. +|++++++++
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~ 38 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPV 38 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 459999999999999999999997 6999998653
No 306
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.33 E-value=0.012 Score=46.03 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=27.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
++|+|||||.+|.-=+..|.+.|+ +|++|..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap 56 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGC-YVYILSK 56 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEcC
Confidence 469999999999999999999998 6999953
No 307
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.33 E-value=0.0051 Score=53.84 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||.+|+-+|..|+++|. +|+|+++.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d 39 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGRGL-SVLLCEQDD 39 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 49999999999999999999997 699999853
No 308
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.33 E-value=0.0063 Score=46.94 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.5
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+++|+|||||.+|.-.+..|.+.|+ +|+++.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGA-HIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcC
Confidence 3569999999999999999999997 6999964
No 309
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.31 E-value=0.0057 Score=53.28 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||.-|+-+|.+|++.|. +|++++|+..
T Consensus 5 dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~ 37 (487)
T COG1233 5 DVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDR 37 (487)
T ss_pred cEEEECCChhHHHHHHHHHhCCC-EEEEEEecCC
Confidence 59999999999999999999997 7999998654
No 310
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.21 E-value=0.0081 Score=49.36 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT 105 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~ 105 (183)
+.+|||+|..|.-+|..|+++| ++|.||++|+..
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~g-k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcC-CEEEEEeccccC
Confidence 3789999999999999999999 579999999764
No 311
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.18 E-value=0.0072 Score=51.82 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHc----CCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRC----GANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~----G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++. |. +|+|++.+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCc
Confidence 3599999999999999999998 86 6999998654
No 312
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.17 E-value=0.0076 Score=52.31 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|+|||||..|+-+|..|++.|. +|++++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence 459999999999999999999996 6999998753
No 313
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.16 E-value=0.0071 Score=51.26 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|.-+|+|++|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 5999999999999999999987325999999754
No 314
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.15 E-value=0.0067 Score=52.33 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~ 102 (183)
+|+|||||.+|+-+|..|++. |. +|+|+++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCC
Confidence 499999999999999999998 76 79999974
No 315
>PLN02576 protoporphyrinogen oxidase
Probab=96.13 E-value=0.011 Score=51.21 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++. |. +|+|++.+++
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~r 47 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDR 47 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCC
Confidence 4699999999999999999999 87 6999998653
No 316
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.13 E-value=0.0067 Score=44.76 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
||+|+|+|..|.-+|..|+..|. +|+|..|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEecc
Confidence 68999999999999999999995 79998764
No 317
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.12 E-value=0.0061 Score=53.01 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
|+|||||..|+-+|..|++.|. +|++++++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence 6899999999999999999996 7999998654
No 318
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.12 E-value=0.0026 Score=47.99 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=32.7
Q ss_pred hhCCCCEEEEccCCCCCcccCCCCCCccC----CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEc
Q psy16200 7 RKDGYTAIFIGIGKPNANVIPIFQGLTEE----MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLG 76 (183)
Q Consensus 7 ~~~~~davviATGa~~p~~l~i~gg~~~~----~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViG 76 (183)
.+..||+||||||+ .|+.+++| | .+. ..+.++.+++.. ...+++|+|||
T Consensus 107 ~~~~~d~lviAtG~-~~~~~~i~-g-~~~~~~~~~~~~~~~~~~~------------------~~~~~~v~VvG 159 (201)
T PF07992_consen 107 REIKYDYLVIATGS-RPRTPNIP-G-EEVAYFLRGVDDAQRFLEL------------------LESPKRVAVVG 159 (201)
T ss_dssp EEEEEEEEEEESTE-EEEEESST-T-TTTECBTTSEEHHHHHHTH------------------SSTTSEEEEES
T ss_pred eEecCCeeeecCcc-ccceeecC-C-Ccccccccccccccccccc------------------ccccccccccc
Confidence 34579999999998 48888999 5 322 345555544432 22345899999
No 319
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.11 E-value=0.0077 Score=51.68 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
||+|||||..|+-+|..|.+.|. +|++++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 48999999999999999999997 6999998653
No 320
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.10 E-value=0.012 Score=49.58 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHc-CCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~ 102 (183)
+|+|||||.+|+-+|..|++. |.++|++++++
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 599999999999999999985 84479999985
No 321
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.10 E-value=0.0079 Score=51.74 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC------CceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCG------ANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G------~~~V~lv~r~~~ 104 (183)
++|+|||||.+|+-+|..|.+.| . +|+|++.+++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r 41 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEY 41 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCC
Confidence 45999999999999999999863 4 6999997654
No 322
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.09 E-value=0.013 Score=41.98 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.||+|+|+|-+|.++|..|++.|..+++|+...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 469999999999999999999999899999864
No 323
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.09 E-value=0.0071 Score=54.60 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||.+|+-+|..|+++|. +|+|+++..
T Consensus 262 dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 262 DAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 69999999999999999999997 699999863
No 324
>KOG0042|consensus
Probab=96.06 E-value=0.0097 Score=52.03 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||||.+|.-||.-++-+|- +|.||++.+
T Consensus 69 DVLIIGGGAtGaGcALDA~TRGL-ktaLVE~~D 100 (680)
T KOG0042|consen 69 DVLIIGGGATGAGCALDAATRGL-KTALVEAGD 100 (680)
T ss_pred cEEEECCCccCcceeehhhcccc-eeEEEeccc
Confidence 39999999999999999999998 699999854
No 325
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.0088 Score=51.76 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+||+|+|||..|+.+|..|++.|. .|||.+++++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCc
Confidence 479999999999999999999998 6999999875
No 326
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.03 E-value=0.13 Score=44.47 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=27.0
Q ss_pred EEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~ 102 (183)
||+||||.++..++..|.++- ..+++|++|.
T Consensus 6 VvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl 37 (488)
T PF06039_consen 6 VVLIGGGIMSATLGYLLKELEPDWSIAIFERL 37 (488)
T ss_pred EEEECchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 999999999999999999873 3479999983
No 327
>PRK07846 mycothione reductase; Reviewed
Probab=96.02 E-value=0.071 Score=46.00 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=23.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||||.-|..+|.. ..|. +|.||++.
T Consensus 4 ~vVIG~G~~g~~aa~~--~~G~-~V~lie~~ 31 (451)
T PRK07846 4 LIIIGTGSGNSILDER--FADK-RIAIVEKG 31 (451)
T ss_pred EEEECCCHHHHHHHHH--HCCC-eEEEEeCC
Confidence 8999999999877755 4585 79999974
No 328
>KOG2495|consensus
Probab=95.97 E-value=0.045 Score=46.70 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=58.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC-CCCH-------------HHHHHH-H-Hc-CcEEEeCCcceE
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI-RAVP-------------EEVQLA-W-EE-KCEFLPFMSPVQ 132 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~-~~~~-------------~~~~~~-~-~~-gv~~~~~~~~~~ 132 (183)
++|||+|.|+.|+.+...+-..-- .|++|.+|..... |..+ +-+... . .. ++.++ ...-.+
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~Y-dV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~~ 133 (491)
T KOG2495|consen 56 KRVVVLGSGWGAISLLKKLDTSLY-DVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECTK 133 (491)
T ss_pred ceEEEEcCchHHHHHHHhcccccc-ceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccEe
Confidence 459999999999999988876644 6999988765211 2111 111111 1 11 23332 233334
Q ss_pred EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
+..+..+| +++... .+ ....+..+..|++|+|+|..||+-
T Consensus 134 iDp~~k~V---~~~s~t--~~-----~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 134 IDPDNKKV---HCRSLT--AD-----SSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred ecccccEE---EEeeec--cC-----CCcceeeecccEEEEeccCCCCCC
Confidence 43322322 333211 11 124567889999999999999873
No 329
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.95 E-value=0.011 Score=44.77 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=27.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|.|||+|.+|..+|..++..|. +|+++.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 58999999999999999999997 799998754
No 330
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.95 E-value=0.024 Score=44.01 Aligned_cols=32 Identities=38% Similarity=0.476 Sum_probs=28.5
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+++|+|||||.+|.-=|+.|.+.|+ +|+++..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~ 43 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA-DVTVVSP 43 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcC
Confidence 3569999999999999999999998 7999854
No 331
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.92 E-value=0.025 Score=46.50 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=38.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS 129 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 129 (183)
||.|+|+|.+|.=+|..|++.| ..|+++.|..+ ++.+.+.|..+.....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~---------~~~l~~~GL~i~~~~~ 50 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR---------LEALKKKGLRIEDEGG 50 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH---------HHHHHhCCeEEecCCC
Confidence 5899999999999999999999 58999987632 2455666776654433
No 332
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.88 E-value=0.012 Score=49.59 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~ 35 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNH 35 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 48999999999999999999986 7999998653
No 333
>KOG2415|consensus
Probab=95.86 E-value=0.067 Score=45.73 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=43.1
Q ss_pred HHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 116 LAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 116 ~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
++++.||+++.+....++.- +++.|.+|-..++..+.+|...+.=....++-+-.-|+|=|-+
T Consensus 192 kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 192 KAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 45778999999999988764 6788999977766655665543221222466677777776643
No 334
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.04 Score=47.21 Aligned_cols=54 Identities=26% Similarity=0.206 Sum_probs=38.2
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~ 127 (183)
+++|+|+|+|-+|+.+|+.|++.|+ +|++..++.. + .......+.+.|+.+..+
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~---~-~~~~~~~l~~~g~~~~~~ 58 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPF---S-ENPEAQELLEEGIKVICG 58 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCc---c-chhHHHHHHhcCCEEEeC
Confidence 3569999999999999999999998 6999875421 1 112233455667776544
No 335
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.0099 Score=48.65 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=30.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+.+|+|||||.+|.+.|+.+.-+|+ +|++++++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecC
Confidence 45679999999999999999999998 69999976
No 336
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.80 E-value=0.013 Score=52.86 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|||||..|+-+|..|++.|. +|+|++|.+
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL 114 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 469999999999999999999998 699999865
No 337
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.80 E-value=0.011 Score=50.66 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=28.3
Q ss_pred EEEEcCChhHHHHHHHHHH----cCCceEEEEEeec
Q psy16200 72 VIVLGAGDTAFDCATSALR----CGANKVLVVFRKG 103 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~----~G~~~V~lv~r~~ 103 (183)
|+|||||.+|+-+|..|++ .|. +|+++++++
T Consensus 3 V~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~~~ 37 (437)
T TIGR01989 3 VVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDAVD 37 (437)
T ss_pred EEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeCCC
Confidence 9999999999999999998 787 699999843
No 338
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.78 E-value=0.11 Score=43.40 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
..|+|+|+|..|+-+|..|+..|. +|.++...+
T Consensus 6 ~dvivvgaglaglvaa~elA~aG~-~V~ildQEg 38 (552)
T COG3573 6 ADVIVVGAGLAGLVAAAELADAGK-RVLILDQEG 38 (552)
T ss_pred ccEEEECccHHHHHHHHHHHhcCc-eEEEEcccc
Confidence 349999999999999999999995 799998644
No 339
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.71 E-value=0.081 Score=44.07 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++.||.|..++.+|..|.+.+.-++.++++++.
T Consensus 5 ~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 5 LIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred EEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 899999999999999999887447999997653
No 340
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.70 E-value=0.11 Score=46.31 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=28.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.|+|||||..|+-+|..+++.|. +|.++++
T Consensus 8 DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K 37 (562)
T COG1053 8 DVVVIGGGGAGLRAAIEAAEAGL-KVALLSK 37 (562)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-cEEEEEc
Confidence 49999999999999999999996 6999996
No 341
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.67 E-value=0.015 Score=50.69 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=27.8
Q ss_pred EEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRC--GANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~ 102 (183)
|+|||||.+|+-+|..|+++ |. +|+++++.
T Consensus 3 VvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~ 34 (483)
T TIGR01320 3 VVLIGAGIMSATLGVLLRELEPNW-SITLIERL 34 (483)
T ss_pred EEEECchHHHHHHHHHHHHhCCCC-eEEEEEcC
Confidence 89999999999999999997 76 79999984
No 342
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.04 Score=47.41 Aligned_cols=54 Identities=20% Similarity=0.081 Sum_probs=40.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM 128 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~ 128 (183)
||.|||.|.+|+.+|++|++.|. +|++++++.. +........+...|+.++.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~---~~~~~~~~~l~~~gi~~~~g~ 55 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDS---PELLERQQELEQEGITVKLGK 55 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCc---hhhHHHHHHHHHcCCEEEECC
Confidence 58999999999999999999997 6999886532 222222344566788887654
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.61 E-value=0.018 Score=50.03 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence 48999999999999999999997 6999998654
No 344
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.54 E-value=0.023 Score=45.76 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|+|+|-+|.++|..|++.|..+++|+....
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4599999999999999999999988999998653
No 345
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.51 E-value=0.069 Score=46.15 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=39.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~ 127 (183)
+++|.|+|.|-+|+-+|++|.+.|. +|++..++... ........+.+.|+.+...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~---~~~~~~~~l~~~gi~~~~~ 68 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE---ELGEVSNELKELGVKLVLG 68 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc---cchHHHHHHHhCCCEEEeC
Confidence 4679999999999999999999997 69998765321 1122223456668777654
No 346
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.061 Score=46.17 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=29.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++++|+|.|-+|+.+|++|+++|. +|++....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4679999999999999999999997 69988754
No 347
>PLN02676 polyamine oxidase
Probab=95.49 E-value=0.018 Score=50.20 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+-+|..|++.|.++|++++++.+
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~ 61 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDR 61 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 35999999999999999999999645999998653
No 348
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.43 E-value=0.025 Score=43.57 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|+|-+|.++|..|++.|..+++++.+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 569999999999999999999998789999875
No 349
>PTZ00367 squalene epoxidase; Provisional
Probab=95.40 E-value=0.021 Score=50.81 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||||..|+-+|..|++.|. +|++++|..
T Consensus 35 dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 35 DVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred cEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 59999999999999999999997 799999865
No 350
>KOG0685|consensus
Probab=95.40 E-value=0.027 Score=48.48 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.||+|||||..|+-+|..|.++|...|+|++-+++
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence 36999999999999999999999889999987654
No 351
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.38 E-value=0.074 Score=45.87 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|.-|..+|. ...|. +|.||+++
T Consensus 4 D~vvIG~G~~g~~aa~--~~~g~-~V~lie~~ 32 (452)
T TIGR03452 4 DLIIIGTGSGNSIPDP--RFADK-RIAIVEKG 32 (452)
T ss_pred CEEEECCCHHHHHHHH--HHCCC-eEEEEeCC
Confidence 3999999998988754 34685 79999974
No 352
>PLN02529 lysine-specific histone demethylase 1
Probab=95.38 E-value=0.027 Score=51.53 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|+|||||..|+.+|..|++.|. +|++++.+.+
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~ 194 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNR 194 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCcc
Confidence 459999999999999999999997 6999998653
No 353
>KOG2614|consensus
Probab=95.37 E-value=0.026 Score=47.78 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|+|||..|+-+|..|++.|- +|.+.+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGI-DVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecc
Confidence 359999999999999999999998 699998753
No 354
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.37 E-value=0.045 Score=47.28 Aligned_cols=49 Identities=20% Similarity=0.083 Sum_probs=36.6
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEe
Q psy16200 70 GTVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP 126 (183)
Q Consensus 70 ~~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~ 126 (183)
++|.|+|.|-+|+. +|++|.++|. +|+....+.. + ....+.+.|+.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~---~----~~~~l~~~gi~~~~ 57 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES---A----VTQRLLELGAIIFI 57 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC---h----HHHHHHHCCCEEeC
Confidence 57999999999999 7999999998 6998865421 1 22345566777754
No 355
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.36 E-value=0.029 Score=40.58 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=37.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM 128 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~ 128 (183)
|+|+|+|.+|.-+|..|++.|. +|+++.|+.+ .+...++|+.+....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~---------~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPR---------LEAIKEQGLTITGPD 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHH---------HHHHHHHCEEEEETT
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEcccc---------HHhhhheeEEEEecc
Confidence 6899999999999999999886 7999987631 234567788776554
No 356
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.35 E-value=0.024 Score=49.30 Aligned_cols=32 Identities=41% Similarity=0.363 Sum_probs=29.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
|+|||+|..|+-+|.+|++.|. +|++++++..
T Consensus 3 vvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~ 34 (493)
T TIGR02730 3 AIVIGSGIGGLVTATQLAVKGA-KVLVLERYLI 34 (493)
T ss_pred EEEECCcHHHHHHHHHHHHCCC-cEEEEECCCC
Confidence 8999999999999999999997 6999998654
No 357
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.33 E-value=0.025 Score=48.78 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~ 104 (183)
+++|||||.+|+-+|.+|++.+ + +|++++..++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r 36 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDR 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCC
Confidence 5999999999999999999998 7 5999998543
No 358
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.32 E-value=0.024 Score=49.60 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~ 103 (183)
.|+|||||.+|+-+|..|+++ +..+|+|+++..
T Consensus 47 DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 47 DVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 599999999999999999996 434799999863
No 359
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.20 E-value=0.076 Score=45.80 Aligned_cols=54 Identities=26% Similarity=0.170 Sum_probs=38.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~ 127 (183)
.+||+|+|-|-+|+.+|++|.++|+ +|++...++. +... ....+..+++++..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~---~~~~-~~~~~~~~~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPA---PEGL-AAQPLLLEGIEVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCC---ccch-hhhhhhccCceeecC
Confidence 5779999999999999999999997 6999976532 2111 112345566666544
No 360
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.19 E-value=0.034 Score=40.08 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|+|.|-+|.++|..|++.|..+++++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999999889999764
No 361
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.19 E-value=0.035 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
||+|+|+|-+|.++|..|++.|..+++++....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998899998753
No 362
>KOG2844|consensus
Probab=95.19 E-value=0.12 Score=46.45 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=26.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
-+|+|||||..|+.+|-.|++.|.+-+.+.+|
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~ 71 (856)
T KOG2844|consen 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLER 71 (856)
T ss_pred ccEEEEcCCchhHHHHHHHHHccccceEEEee
Confidence 46999999999999999999999754555555
No 363
>PLN02612 phytoene desaturase
Probab=95.13 E-value=0.037 Score=49.19 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=31.3
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+.+|+|||||..|+-+|..|++.|. +|++++++.+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~ 127 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDV 127 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 34569999999999999999999996 6999998643
No 364
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.10 E-value=0.17 Score=45.09 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHHHHcCcEEEeCCcceEEEcc--C--CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200 114 VQLAWEEKCEFLPFMSPVQVDVK--D--NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180 (183)
Q Consensus 114 ~~~~~~~gv~~~~~~~~~~i~~~--~--~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 180 (183)
..+++++||+|++++.++++..+ + ++|++|++.+ +| ...+....+.|.||+++|..-.
T Consensus 233 ~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~----~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 233 IKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NG----KEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CC----ceeEEEecCCCEEEEeCCcCcc
Confidence 45678999999999999998753 3 4688888742 00 1112233478999999997654
No 365
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.08 E-value=0.029 Score=49.03 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~ 103 (183)
.|+|||||.+|+-+|..|+++ |. +|+|++|..
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~~g~-~V~VlEk~~ 40 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELEPEW-SITMFERLD 40 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence 499999999999999999985 54 799999853
No 366
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.06 E-value=0.04 Score=50.83 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||||..|+.+|..|++.|. +|++++.+.+
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r 272 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRAR 272 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-cEEEEecccc
Confidence 459999999999999999999997 6999998653
No 367
>PRK09897 hypothetical protein; Provisional
Probab=95.04 E-value=0.095 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.3
Q ss_pred cceEEEEcCChhHHHHHHHHHHc
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRC 91 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~ 91 (183)
+.+|+|+|.|.+++|.+..|...
T Consensus 191 ~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 191 ACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc
Confidence 46699999999999999998765
No 368
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.01 E-value=0.047 Score=40.64 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=27.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+.+|+|+|+|.+|..++..|..+|+ +|+.+..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCC
Confidence 34679999999999999999999998 58888753
No 369
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.01 E-value=0.023 Score=47.96 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
||.|+|.|++|+-.|..|+++|. +|+.+..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GH-eVv~vDi 31 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGH-EVVCVDI 31 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCC-eEEEEeC
Confidence 58999999999999999999996 6988864
No 370
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.00 E-value=0.047 Score=40.92 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=29.0
Q ss_pred CcceEEEEcCChh-HHHHHHHHHHcCCceEEEEEee
Q psy16200 68 LKGTVIVLGAGDT-AFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 68 ~~~~VvViGgG~~-g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+++|+|||+|.+ |.-+|..|.+.|+ +|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 3456999999975 8889999999998 69999875
No 371
>PLN02487 zeta-carotene desaturase
Probab=94.94 E-value=0.04 Score=49.02 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|.+.|. +|+++++++.
T Consensus 77 ~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~ 109 (569)
T PLN02487 77 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPF 109 (569)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCC
Confidence 79999999999999999999996 6999998654
No 372
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.89 E-value=0.24 Score=41.22 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=57.0
Q ss_pred EEEEcCChhHHHHHHHHHHcC-CceEEEEEeecCCcCC--CCHHH----------HHH---H-HHcCcEEEeCCcceEEE
Q psy16200 72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRKGCTNIR--AVPEE----------VQL---A-WEEKCEFLPFMSPVQVD 134 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~~~~~~--~~~~~----------~~~---~-~~~gv~~~~~~~~~~i~ 134 (183)
++|+|+|..|+.+|..+.+.. ..+++++.+....... ..... +.. . .+.++.++.++.+.++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 589999999999999887753 2368877765432110 00000 000 1 24467777777776665
Q ss_pred ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
.+...+. + .++ .+..|.+++|+|..|...
T Consensus 81 ~~~~~v~---~-------------~~g---~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 81 PENKVVL---L-------------DDG---EIEYDYLVLATGARPRPP 109 (415)
T ss_pred CCCCEEE---E-------------CCC---cccccEEEEcCCCcccCC
Confidence 4333221 1 223 788999999999999875
No 373
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.88 E-value=0.045 Score=42.14 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|.|-+|.++|..|++.|..+++++.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 569999999999999999999998889999875
No 374
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.83 E-value=0.04 Score=47.38 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|+.+|..|++.|. +|.+|+++
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~ 35 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 39999999999999999999996 79999973
No 375
>PLN02568 polyamine oxidase
Probab=94.82 E-value=0.044 Score=48.47 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC----ceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGA----NKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~----~~V~lv~r~~~ 104 (183)
.+|+|||+|..|+-+|..|++.|. .+|+|++++.+
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 469999999999999999998871 36999997553
No 376
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.80 E-value=0.056 Score=41.50 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|.|-+|.++|..|++.|.++++++...
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 469999999999999999999999999999864
No 377
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.099 Score=42.50 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=30.7
Q ss_pred CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|||.|. +|.-+|..|.+.|+ .|+++++++
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t 192 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS 192 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc
Confidence 345699999988 99999999999998 799999864
No 378
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.76 E-value=0.084 Score=45.72 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=27.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVF 100 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~ 100 (183)
+++|+|||||.+|.-=+..|.+.|+ +|+++.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga-~v~vis 42 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGA-RLTVNA 42 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEc
Confidence 3569999999999999999999998 699984
No 379
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=94.75 E-value=0.039 Score=48.39 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=28.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+| .|+-+|..+++.|+ +|.|+++.+
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~ 39 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGL-SVALVEATD 39 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCC-cEEEEecCC
Confidence 49999999 99999999999998 699999743
No 380
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.73 E-value=0.058 Score=41.38 Aligned_cols=34 Identities=9% Similarity=0.238 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|+|.|.+|+++|..|+..|..+++++....
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4699999999999999999999999999998653
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.69 E-value=0.048 Score=44.27 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|.|||+|.+|..+|..++..|. +|+++.+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 479999999999999999999997 7999987643
No 382
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.69 E-value=0.039 Score=44.41 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=27.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
++|||+|..|+-+|..|++.|..+|.|+++.+.
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred EEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 899999999999999999987557999998654
No 383
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.69 E-value=0.054 Score=43.83 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=29.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..+++.|. +|+++.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 469999999999999999999997 699998754
No 384
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.13 Score=44.84 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=28.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.+++|+|+|.|-+|+-++++|..+|+ +|++..+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~ 43 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD 43 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 34679999999999999999999997 6998764
No 385
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.68 E-value=0.082 Score=34.78 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=28.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.+++++|+|.|.+|.-++..+.+.+.++|+++.|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3467999999999999999999985557888866
No 386
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.66 E-value=0.051 Score=44.93 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=29.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..++..|. +|++..+++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 679999999999999999999997 799998754
No 387
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.66 E-value=0.057 Score=42.29 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|.|-+|.++|..|++.|..+++++...
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 569999999999999999999999999999763
No 388
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.15 Score=44.28 Aligned_cols=33 Identities=9% Similarity=-0.077 Sum_probs=29.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|.|-+|..+|++|.++|+ +|++...+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP-AQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCC
Confidence 4679999999999999999999998 69887643
No 389
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.61 E-value=0.054 Score=45.08 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|||+|-.|..+|..|++.|..+++|+.+..
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5699999999999999999999988899998753
No 390
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.58 E-value=0.21 Score=42.48 Aligned_cols=83 Identities=8% Similarity=0.123 Sum_probs=49.0
Q ss_pred HHHHHHHcC--CceEEEEEeecCC-cCCC----------C-HHH-H----HHH-HHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200 84 CATSALRCG--ANKVLVVFRKGCT-NIRA----------V-PEE-V----QLA-WEEKCEFLPFMSPVQVDVKDNKIAGM 143 (183)
Q Consensus 84 ~A~~l~~~G--~~~V~lv~r~~~~-~~~~----------~-~~~-~----~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v 143 (183)
+|..|.+++ . +|+|+++++.. ..|. . ..+ + ..+ .+.|++++.+..+.++..++..+.
T Consensus 2 aA~~l~~~~~~~-~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~-- 78 (427)
T TIGR03385 2 AASRVRRLDKES-DIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV-- 78 (427)
T ss_pred HHHHHHhhCCCC-cEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE--
Confidence 456666653 3 59999987642 1111 0 111 1 223 567899988888888764444332
Q ss_pred EEEEeeecCCCCeecCCCceEEEE--CCEEEEcccccccCC
Q psy16200 144 QFNRTEQNEKGEWVEDEEQRIKLK--ANYIISAFGSTLLDN 182 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~g~~~~i~--~D~Vi~a~G~~p~~~ 182 (183)
+.. .++...+. +|.||+|+|.+|+..
T Consensus 79 -~~~------------~~~~~~~~~~yd~lIiATG~~p~~~ 106 (427)
T TIGR03385 79 -VRN------------NKTNETYEESYDYLILSPGASPIVP 106 (427)
T ss_pred -EEE------------CCCCCEEecCCCEEEECCCCCCCCC
Confidence 321 11122455 999999999998753
No 391
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.56 E-value=0.28 Score=44.63 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=63.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecCCc---------CC--CCHHHH-----HHHHHcCcEEEeCCcce
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGCTN---------IR--AVPEEV-----QLAWEEKCEFLPFMSPV 131 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~~~---------~~--~~~~~~-----~~~~~~gv~~~~~~~~~ 131 (183)
.+++|||.|..|.-+...+.+.. .-.+|++...++.. ++ ..-+++ ++..++||.++++..++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 46999999999999888777632 23688887544311 00 111121 24578899999999998
Q ss_pred EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182 (183)
Q Consensus 132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 182 (183)
++.. +.+. | + +....++..|-+|+|+|..|.-.
T Consensus 84 ~idr-~~k~--V-~--------------t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 84 QIDR-ANKV--V-T--------------TDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred Eecc-Ccce--E-E--------------ccCCcEeecceeEEecCcccccc
Confidence 8864 2332 1 1 12234788999999999999754
No 392
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.55 E-value=0.061 Score=42.47 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
||+|||+|-+|++++..|+..|..+++++....
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999999999998743
No 393
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.54 E-value=0.05 Score=47.65 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r 101 (183)
.|+|||||.+|+.+|..|++. +. +|+|++|
T Consensus 8 DvvIIGgGI~G~sla~~L~~~~~~~-~V~vlEr 39 (497)
T PRK13339 8 DVVLVGAGILSTTFGVLLKELDPDW-NIEVVER 39 (497)
T ss_pred CEEEECchHHHHHHHHHHHhCCCCC-eEEEEEc
Confidence 499999999999999999998 65 7999999
No 394
>KOG4716|consensus
Probab=94.53 E-value=0.086 Score=43.96 Aligned_cols=29 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVF 100 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~ 100 (183)
..+|||||--|+.||..++.+|+ +|.++.
T Consensus 21 DLIviGgGSgGLacaKeAa~~G~-kV~~lD 49 (503)
T KOG4716|consen 21 DLIVIGGGSGGLACAKEAADLGA-KVACLD 49 (503)
T ss_pred cEEEEcCCcchhhHHHHHHhcCC-cEEEEe
Confidence 48999999999999999999997 588875
No 395
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.53 E-value=0.067 Score=42.38 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|+|+|-+|..+|..|++.|..+++++....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5699999999999999999999999999998743
No 396
>KOG2820|consensus
Probab=94.53 E-value=0.62 Score=38.86 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=27.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+|||+|-.|+-.|..|+++| .++.++++.
T Consensus 10 viiVGAGVfG~stAyeLaK~g-~killLeqf 39 (399)
T KOG2820|consen 10 VIIVGAGVFGLSTAYELAKRG-DKILLLEQF 39 (399)
T ss_pred EEEEcccccchHHHHHHHhcC-CeEEEEecc
Confidence 999999999999999999999 579999873
No 397
>PLN03000 amine oxidase
Probab=94.52 E-value=0.054 Score=50.30 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.+|+|||+|..|+.+|..|.+.|. +|++++.+.+
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~r 218 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKR 218 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCc
Confidence 469999999999999999999997 6999998654
No 398
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.50 E-value=0.07 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|||+|-+|.++|..|++.|..+++++...
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999999889999875
No 399
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.45 E-value=0.067 Score=44.57 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|||+|.+|..+|..|++.|..+++++...
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 569999999999999999999999889999874
No 400
>PRK08328 hypothetical protein; Provisional
Probab=94.44 E-value=0.07 Score=41.98 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|+|-+|.++|..|++.|..+++++...
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 469999999999999999999999999999754
No 401
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.42 E-value=0.067 Score=43.43 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=30.6
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|-.|.-++..|+..|+++|+++.|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998889999774
No 402
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.40 E-value=0.056 Score=44.51 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
||+|||+|-+|+|+|..|+..|..+++++....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 589999999999999999999999999998743
No 403
>KOG2013|consensus
Probab=94.38 E-value=0.058 Score=46.55 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=33.0
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
.++||+|||+|-+|||+-..|+..|-++||+|...+-
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTI 47 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTI 47 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccce
Confidence 3578999999999999999999999999999987543
No 404
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=94.37 E-value=0.047 Score=47.10 Aligned_cols=32 Identities=31% Similarity=0.202 Sum_probs=29.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
|+|||+|..++-+|..|++.|. +|.+++|++.
T Consensus 7 ViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~ 38 (443)
T PTZ00363 7 VIVCGTGLKECILSGLLSVNGK-KVLHMDRNPY 38 (443)
T ss_pred EEEECCChHHHHHHhhhhhCCC-EEEEecCCCC
Confidence 9999999999999999999995 7999998754
No 405
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.32 E-value=0.059 Score=47.94 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+|+|||+|..|+.+|..+++.|+ +|.++++.+
T Consensus 11 DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~ 42 (574)
T PRK12842 11 DVLVIGSGAGGLSAAITARKLGL-DVVVLEKEP 42 (574)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 49999999999999999999998 699999754
No 406
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.30 E-value=0.069 Score=43.19 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=29.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 469999999999999999999997 699998754
No 407
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.29 E-value=0.067 Score=43.34 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..++..|. +|+++.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 569999999999999999999997 699998754
No 408
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.29 E-value=0.071 Score=43.61 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
||+|+|+|.+|.=+|.+|++.|. +|+++.|+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 59999999999999999999997 69999885
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.28 E-value=0.2 Score=34.41 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=34.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~ 127 (183)
|+|+|.|..|..++..|.+.+ .+|+++++.+ +....+.++|+.++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~--------~~~~~~~~~~~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDP--------ERVEELREEGVEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSH--------HHHHHHHHTTSEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCc--------HHHHHHHhcccccccc
Confidence 689999999999999999965 4799997643 2345566777766554
No 410
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.26 E-value=0.73 Score=39.57 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 115 QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 115 ~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
+.+++.|+.|+.+..+.++..++++++++... .+.+..+.+|.+|+|+|.-
T Consensus 271 ~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~-------------~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 271 HRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR-------------NHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHCCCEEEECcEEEEEEeeCCeEEEEEec-------------CCccceEECCEEEEccCCC
Confidence 34577899999999998887666777755431 2224579999999999964
No 411
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.24 E-value=0.067 Score=49.27 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecC
Q psy16200 71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGC 104 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~ 104 (183)
+|+|||||..|+-+|..|++. |. +|+|+++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence 599999999999999999998 66 7999998753
No 412
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.23 E-value=0.077 Score=39.49 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=27.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
..+++++|+|=|.+|--+|..|..+|+ +|++.+..+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP 56 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP 56 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence 345669999999999999999999998 699998754
No 413
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.22 E-value=0.084 Score=42.78 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|||+|-+|--++..|++.|+++|+++.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4569999999999999999999998889999875
No 414
>KOG0405|consensus
Probab=94.18 E-value=0.53 Score=39.52 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=27.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|||||--|+-.|++++.+|+ +|.+++-.
T Consensus 23 ylvIGgGSGGvasARrAa~~GA-kv~l~E~~ 52 (478)
T KOG0405|consen 23 YLVIGGGSGGVASARRAASHGA-KVALCELP 52 (478)
T ss_pred eEEEcCCcchhHHhHHHHhcCc-eEEEEecC
Confidence 7999999999999999999998 69999854
No 415
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.18 E-value=0.071 Score=43.47 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
||+|||+|-+|++++..|+..|..+++++....
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 589999999999999999999999999998643
No 416
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.14 E-value=0.073 Score=45.94 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecC
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGC 104 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~ 104 (183)
....+|+|+|.|.+-.|....|.++|.+ ++|++.|++.
T Consensus 194 ~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl 232 (474)
T COG4529 194 DADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGL 232 (474)
T ss_pred cCCCceEEecCCchhHHHHHHHhccCCccceEEEecccc
Confidence 3456699999999999999999987632 6999999763
No 417
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.13 E-value=0.093 Score=41.66 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|||.|-+|.++|..|++.|..+++++...
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 569999999999999999999999899999864
No 418
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.11 E-value=0.08 Score=42.76 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 58999999999999999999986 79999874
No 419
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.07 E-value=0.09 Score=42.76 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=30.4
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+++|+|+|.|.+|..+|..|..+|+ +|+++.|+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 4569999999999999999999998 799998754
No 420
>PTZ00058 glutathione reductase; Provisional
Probab=94.06 E-value=0.074 Score=47.28 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||||..|..+|..++++|. +|.+|++.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKA-KVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCC-eEEEEecc
Confidence 49999999999999999999996 79999974
No 421
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.05 E-value=0.076 Score=46.98 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~ 37 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGK-RVLLLDQEN 37 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 39999999999999999999997 699999755
No 422
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.04 E-value=0.18 Score=40.92 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=30.6
Q ss_pred CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|+|.|. +|.-+|..|.+.|+ .|++++|++
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t 193 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT 193 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence 456799999997 99999999999998 799999853
No 423
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.04 E-value=0.096 Score=41.09 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=31.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCc--eEEEEEeec
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGAN--KVLVVFRKG 103 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~--~V~lv~r~~ 103 (183)
+++++|+|+|-.|.-+|..|.+.|.+ +++++.|.+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 35799999999999999999999987 899999874
No 424
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.01 E-value=0.084 Score=43.19 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=29.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|.|||+|.+|..+|..|++.|. +|+++.|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 369999999999999999999997 699998764
No 425
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.99 E-value=0.098 Score=44.75 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=29.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+++|+|+|.|.+|.-+|..+..+|+ +|+++++.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 45679999999999999999999998 69888764
No 426
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=93.99 E-value=0.09 Score=42.50 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..|...|. +|++++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGR-EVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCc-EEEEEEcC
Confidence 38999999999999999999996 79999974
No 427
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.97 E-value=0.091 Score=43.14 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|||+|.+|..++..|...|.++|+++.|.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~ 211 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT 211 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4679999999999999999988887789998775
No 428
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.96 E-value=0.1 Score=42.10 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=30.2
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|-+|..++..|+..|..+|+++.|+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4569999999999999999999996689999875
No 429
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=93.95 E-value=0.31 Score=36.55 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=38.0
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEe
Q psy16200 72 VIVLG-AGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP 126 (183)
Q Consensus 72 VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~ 126 (183)
++|+| .|.+|..+|++|++.+++++.++.|++.. .+.....+..+...|..+..
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~-~~~~~~~i~~l~~~g~~v~~ 57 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAP-SAEAEAAIRELESAGARVEY 57 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGG-STTHHHHHHHHHHTT-EEEE
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCc-cHHHHHHHHHHHhCCCceee
Confidence 67776 78899999999999998889999887421 22333456667777776543
No 430
>KOG3851|consensus
Probab=93.93 E-value=0.095 Score=43.36 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=27.2
Q ss_pred eEEEEcCChhHHHHHHHH-HHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSA-LRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l-~~~G~~~V~lv~r~~ 103 (183)
+|+|+|||.-|+.+|..+ .++|..+|-|++.+.
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 599999999999988755 456777899998754
No 431
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.93 E-value=0.098 Score=42.37 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 569999999999999999999997 799998753
No 432
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=93.85 E-value=0.098 Score=46.49 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=29.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHc----CCceEEEEEeecC
Q psy16200 70 GTVIVLGAGDTAFDCATSALRC----GANKVLVVFRKGC 104 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~----G~~~V~lv~r~~~ 104 (183)
++|+|||||..|+-+|.+|++. |. +|+|+++.+.
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~ 60 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDV 60 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCC
Confidence 4699999999999999999986 44 7999998653
No 433
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.84 E-value=0.13 Score=38.56 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=29.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|.|||.|.+|..+|+.|..+|+ +|..+.|..
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 34569999999999999999999998 699988754
No 434
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.83 E-value=0.09 Score=43.05 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
||+|+|+|-.|.++|+.|++.|..+++++...
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999999999999863
No 435
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.82 E-value=0.11 Score=42.51 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
-+|+|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeC
Confidence 369999999999999999999996 79999885
No 436
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.80 E-value=0.12 Score=42.04 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=30.0
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++++|+|+|-+|.-+|..|++.|+++|+++.|+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3569999999999999999999998779999876
No 437
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.79 E-value=0.27 Score=42.04 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=27.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
|+.|||.|-+|+-+|++|.+.|. +|+....+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence 47899999999999999999998 69998765
No 438
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.74 E-value=0.11 Score=43.80 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=29.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|.+|..++..|..+|+ +|+++.|+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4679999999999999999999998 69999875
No 439
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.71 E-value=0.11 Score=42.10 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..|+..|. +|+++.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 569999999999999999999996 799998754
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.70 E-value=0.12 Score=42.15 Aligned_cols=35 Identities=37% Similarity=0.396 Sum_probs=31.3
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|+|.|.+|..++..|.++|+ +|+++.|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 35679999999999999999999998 799998864
No 441
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.70 E-value=0.14 Score=37.11 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=28.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++++|+|+|.+|..++..|.+.|.++|+++.|+
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4679999999999999999999864478888664
No 442
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.70 E-value=0.11 Score=40.85 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|.|-+|.++|..|++.|..+.+|+...
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 469999999999999999999999899999864
No 443
>PRK08223 hypothetical protein; Validated
Probab=93.68 E-value=0.12 Score=42.05 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|||+|-.|..+|.+|++.|..+++++....
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4699999999999999999999999999998643
No 444
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.61 E-value=0.19 Score=43.26 Aligned_cols=49 Identities=12% Similarity=-0.055 Sum_probs=35.9
Q ss_pred eEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200 71 TVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127 (183)
Q Consensus 71 ~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~ 127 (183)
++.+||-|-+||. +|++|+++|. +|+....... + ....+.+.|+.+..+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~-~v~~~D~~~~---~----~~~~l~~~gi~~~~g 50 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY-QVSGSDIAEN---A----TTKRLEALGIPIYIG 50 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC-eEEEECCCcc---h----HHHHHHHCcCEEeCC
Confidence 3789999999998 9999999998 6988764321 1 233456668877644
No 445
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.59 E-value=0.1 Score=46.32 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.|+|||+|..|+-+|..+++.|+ +|.||++.+
T Consensus 9 DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~ 40 (557)
T PRK07843 9 DVVVVGSGAAGMVAALTAAHRGL-STVVVEKAP 40 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 49999999999999999999997 699999854
No 446
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.57 E-value=0.13 Score=39.49 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=27.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
+++++|+|.|.+|.-+|+.|.+.|+ +|++..+
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 4569999999999999999999998 6887654
No 447
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.47 E-value=0.15 Score=37.83 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=28.7
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 72 VIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 72 VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
|+|+|| |.+|-.++..|.+.|. +|+.+.|++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCch
Confidence 689997 9999999999999996 7999998754
No 448
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.2 Score=42.03 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=55.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-----------cCCCC--HHHHHH----HHHcCcEEEeCCcceEE
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-----------NIRAV--PEEVQL----AWEEKCEFLPFMSPVQV 133 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-----------~~~~~--~~~~~~----~~~~gv~~~~~~~~~~i 133 (183)
.|+|||||..|..+|.+.+|.|.+.=.+-+|-+.- ..|.. +..... ..+..|+++...+..++
T Consensus 213 DVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l 292 (520)
T COG3634 213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKL 292 (520)
T ss_pred eEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcc
Confidence 49999999999999999999987532333332110 01111 111111 23446777777777776
Q ss_pred Ec--cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 134 DV--KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 134 ~~--~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
.. +.+.+..+++. +|. .+.+.+||+|+|.+
T Consensus 293 ~~a~~~~~l~ev~l~-------------nGa--vLkaktvIlstGAr 324 (520)
T COG3634 293 EPAAVEGGLIEVELA-------------NGA--VLKARTVILATGAR 324 (520)
T ss_pred eecCCCCccEEEEec-------------CCc--eeccceEEEecCcc
Confidence 54 22334334442 232 57788899999865
No 449
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.45 E-value=0.15 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=30.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC 104 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~ 104 (183)
...+|+|+|+|++|+-.|..|.+.|- +|++++-+++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r 41 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDR 41 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCC
Confidence 33469999999999999999999998 6999986543
No 450
>KOG0404|consensus
Probab=93.45 E-value=0.69 Score=36.60 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=25.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVF 100 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~ 100 (183)
.+|+|||.|..|..+|.++++...| -.+++
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelk-PllfE 38 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELK-PLLFE 38 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccC-ceEEe
Confidence 4799999999999999999998663 55665
No 451
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.13 Score=40.21 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
+++|+|+|..|..+|+.|.+.|. .|+++.+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH
Confidence 58999999999999999999996 699998743
No 452
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.42 E-value=0.12 Score=45.28 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=30.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+.+|+|+|+|.+|+-++..+..+|+ +|+++++++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 46789999999999999999999998 699887653
No 453
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.42 E-value=0.13 Score=44.02 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=30.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|.+|..++..|...|..+|+++.|.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4569999999999999999999996679998875
No 454
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.41 E-value=0.28 Score=39.86 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=30.3
Q ss_pred CcceEEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAG-DTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|||.| .+|.-+|..|.+.|+ .|++++.++
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t 191 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILT 191 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCc
Confidence 35679999999 899999999999998 799998654
No 455
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.36 E-value=0.11 Score=46.06 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.|+|||+|..|+-+|..+++.|. +|.|+++.
T Consensus 8 DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~ 38 (557)
T PRK12844 8 DVVVVGSGGGGMCAALAAADSGL-EPLIVEKQ 38 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 49999999999999999999997 69999974
No 456
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.34 E-value=0.39 Score=42.84 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=41.2
Q ss_pred HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEEC-CEEEEccccccc
Q psy16200 115 QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA-NYIISAFGSTLL 180 (183)
Q Consensus 115 ~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~ 180 (183)
..+++.|+++++++.+.++..++++|+++.+. ..++.+.+.+ +.||+|+|--..
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~------------~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETDHGRVIGATVV------------QGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEe------------cCCeEEEEEccceEEECCCCccc
Confidence 34567899999999999987656888888763 2455667886 789999997554
No 457
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.33 E-value=0.13 Score=41.65 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=27.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
||+|+|+|.+|.-+|..|++.|. +|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 58999999999999999999986 6999977
No 458
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.33 E-value=0.14 Score=43.63 Aligned_cols=35 Identities=31% Similarity=0.226 Sum_probs=30.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|+|.|.+|.-+|..+..+|+ +|.++++.+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 45679999999999999999999998 699887653
No 459
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.32 E-value=0.36 Score=42.92 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=41.6
Q ss_pred HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200 116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178 (183)
Q Consensus 116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~ 178 (183)
.+.+.||+++.++.++++..+++++.++..... .+|+...+.++.||+|+|--
T Consensus 128 ~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~----------~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 128 QNLKADTSFFNEYFALDLLMEDGECRGVIAYCL----------ETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc----------CCCcEEEEEeCeEEECCCCc
Confidence 345689999999999998766788988876421 35667788999999999954
No 460
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.28 E-value=0.14 Score=42.66 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.3
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|||+|.+|--+|..|.+.|.+++++..|.
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3569999999999999999999998778888775
No 461
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.26 E-value=0.12 Score=44.38 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+|+|||+|..|+-+|..+++.|. +|+++++.
T Consensus 4 DviIIG~G~aGl~aA~~la~~g~-~v~vi~~~ 34 (422)
T PRK05329 4 DVLVIGGGLAGLTAALAAAEAGK-RVALVAKG 34 (422)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEECC
Confidence 39999999999999999999997 69999864
No 462
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.25 E-value=0.13 Score=41.52 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
++|.|||+|.+|..+|..+++.|. +|+++.+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 469999999999999999999997 699998654
No 463
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.24 E-value=0.13 Score=42.76 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCC
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR 108 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~ 108 (183)
.|-|||||..|.|+|..+++.|. .|.|.++|+...-|
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~k~Tp 41 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPVKGTP 41 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCC-cEEEEEcccccCCC
Confidence 38999999999999999999998 69999998764333
No 464
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.24 E-value=0.4 Score=42.06 Aligned_cols=52 Identities=13% Similarity=0.253 Sum_probs=40.6
Q ss_pred HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200 116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 177 (183)
Q Consensus 116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~ 177 (183)
.+.+.|+++++++.+.++..+++++.++++.+. .+|+..++.|+.||.|+|.
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~----------~~g~~~~i~a~~VVnAaG~ 188 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGGRVTGVKVEDH----------KTGEEERIEAQVVINAAGI 188 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEc----------CCCcEEEEEcCEEEECCCc
Confidence 456789999999999999766677777776431 3455678999999999995
No 465
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.24 E-value=0.16 Score=38.45 Aligned_cols=33 Identities=36% Similarity=0.443 Sum_probs=28.7
Q ss_pred cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++++|+|| |.+|..++..|++.|. +|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 356999997 9999999999999986 79999875
No 466
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.22 E-value=0.15 Score=38.71 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=24.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
||.|||-|++|+-+|..|++.|. +|+-+...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCC
Confidence 69999999999999999999996 79998754
No 467
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.13 Score=42.70 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=27.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 72 VIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
|+|||||..|+-|+..|.+.|. ++.||.+
T Consensus 5 v~IIGGGLAGltc~l~l~~~Gk-~c~iv~~ 33 (421)
T COG3075 5 VAIIGGGLAGLTCGLALQQAGK-RCAIVNR 33 (421)
T ss_pred EEEEcCcHHHHHHHHHHHhcCC-cEEEEeC
Confidence 9999999999999999999995 6888886
No 468
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.12 E-value=0.25 Score=32.79 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcC---CceEEEEEe
Q psy16200 71 TVIVLGAGDTAFDCATSALRCG---ANKVLVVFR 101 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G---~~~V~lv~r 101 (183)
|+.|||+|.+|.-++..|.+.| . +|+++..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~ 33 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSS 33 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeecc
Confidence 5889999999999999999998 5 6887743
No 469
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.06 E-value=0.29 Score=42.19 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200 116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
++++.|++|++++.+..+..+++.+..+... . ..++++|.||+|.|+..
T Consensus 182 ~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-------------~--g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 182 YLESLGGEIRFNTEVEDIEIEDNEVLGVKLT-------------K--GEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHhcCcEEEeeeEEEEEEecCCceEEEEcc-------------C--CcEEecCEEEEccCcch
Confidence 4567899999999999987655555544432 2 24899999999999864
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.03 E-value=0.16 Score=43.54 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=30.6
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|+|.|.+|..+|..|..+|+ +|+++.+.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 45669999999999999999999998 699987654
No 471
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.02 E-value=0.16 Score=43.48 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=30.0
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|.+|.-++..|...|+++|+++.|.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4569999999999999999999998779888775
No 472
>PRK06153 hypothetical protein; Provisional
Probab=93.01 E-value=0.14 Score=43.40 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|||+|-+|..++..|++.|..+++|+...
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 469999999999999999999999999999863
No 473
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.99 E-value=0.12 Score=43.26 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+..||+|||+|.+|+.+|-.|+++ . +||+++-.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-h-dVTLfEA~ 39 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-H-DVTLFEAD 39 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-c-ceEEEecc
Confidence 4456799999999999999999987 4 69999853
No 474
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.96 E-value=0.17 Score=41.25 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
++|.|||+|.+|..+|..|++.|. +|+++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 569999999999999999999997 69998764
No 475
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.95 E-value=0.2 Score=40.80 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=29.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++++|+|+|-.|.-++..|+..|+++++++.|.
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4569999999999988888989998889999875
No 476
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.94 E-value=0.31 Score=39.96 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=30.6
Q ss_pred CcceEEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAG-DTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|||.| .+|.-+|..|.+.|+ .|+++++++
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t 193 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS 193 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC
Confidence 45669999985 999999999999998 799998764
No 477
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.87 E-value=0.92 Score=35.61 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=27.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEE-EEEee
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVL-VVFRK 102 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~-lv~r~ 102 (183)
.+++|+|.|-|.+|..+|+.|.+.|++ |+ +....
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~-vv~v~D~~ 64 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAK-VVAVSDSD 64 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCC
Confidence 346799999999999999999999985 66 55443
No 478
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.86 E-value=0.19 Score=42.06 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=31.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|+|+|-+|.++|..|++.|..+++++....
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4699999999999999999999999999998743
No 479
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.86 E-value=0.15 Score=45.77 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.||+|+|+|-.|+.+|++|++.|.+++++|...
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 369999999999999999999999999999864
No 480
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.83 E-value=0.5 Score=40.61 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+-|+|+|.|-+|+.+|+.|.++|. +|+.....
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 38 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR 38 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 569999999999999999999997 69998754
No 481
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.82 E-value=0.17 Score=43.26 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.5
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r 101 (183)
.++|+|||+|.+|.-+|..|++.|.++|+++.|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 356999999999999999999999888888876
No 482
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.80 E-value=0.19 Score=42.42 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|||+|-+|.++|..|++.|..+++++...
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 469999999999999999999999899999874
No 483
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=92.79 E-value=0.15 Score=43.88 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCC-----ceEEEEEeec
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGA-----NKVLVVFRKG 103 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~-----~~V~lv~r~~ 103 (183)
||+|||+|.+|+|++..|+..|. .+++++....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 58999999999999999999998 7899998744
No 484
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.76 E-value=0.36 Score=39.27 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.2
Q ss_pred CcceEEEEcCChh-HHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDT-AFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~-g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|||.+.+ |.-+|..|.+.|+ .|+++++++
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~t 192 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSKT 192 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCCC
Confidence 4566999998887 9999999999998 799998764
No 485
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.72 E-value=0.19 Score=40.96 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+|+|+|.|-+|.|+|..|+..|.++++|+....
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 4699999999999999999999999999998643
No 486
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.72 E-value=0.22 Score=40.24 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=30.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|-.|.-++..|.+.|+++|+++.|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4579999999999999999999998889999875
No 487
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.69 E-value=0.31 Score=45.21 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=37.9
Q ss_pred ceEEEEcCChhHHHH-HHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCC
Q psy16200 70 GTVIVLGAGDTAFDC-ATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM 128 (183)
Q Consensus 70 ~~VvViGgG~~g~e~-A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~ 128 (183)
+++.|+|-|-+|+.+ |++|.++|. +|+....+.. + .+..+.+.|+.+..+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~-~V~~sD~~~~---~----~~~~L~~~gi~~~~g~ 56 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGY-SVSGSDLSEG---K----TVEKLKAKGARFFLGH 56 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCC-eEEEECCCCC---h----HHHHHHHCCCEEeCCC
Confidence 459999999999998 999999998 6988764321 1 2344666788776554
No 488
>KOG1276|consensus
Probab=92.66 E-value=0.21 Score=42.73 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=28.3
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~ 103 (183)
.+.+|+|+|||.+|+-+|.+|++++.+ .|++++..+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 456799999999999999999999864 245566543
No 489
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.64 E-value=0.28 Score=40.61 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=30.1
Q ss_pred CCcceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 67 ILKGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 67 ~~~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
...++|+|.|| |++|..++..|.+.|. +|+.+.|..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 34467999996 9999999999999996 699888743
No 490
>PRK04148 hypothetical protein; Provisional
Probab=92.62 E-value=0.18 Score=36.38 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=28.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
++++++||.| .|.++|..|++.|. +|+.+..+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECC
Confidence 3579999999 99999999999997 79999765
No 491
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.62 E-value=0.2 Score=42.31 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
.+|+|+|.|-+|..+|..|++.|..+++++.+.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999999899999874
No 492
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.60 E-value=0.22 Score=40.46 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=30.4
Q ss_pred cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|+|-.|--++..|++.|+++++++.|.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4569999999999999999999998889998764
No 493
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.54 E-value=0.22 Score=43.28 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=30.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|+|.|.+|..+|..|..+|+ +|+++++.+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 45669999999999999999999998 699887653
No 494
>KOG0024|consensus
Probab=92.53 E-value=0.57 Score=38.75 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=39.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200 67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS 129 (183)
Q Consensus 67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 129 (183)
.++.+|+|+|+|.+|+-....+...|+++|.+++-. +..++.+++.|.+...+.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~--------~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV--------ANRLELAKKFGATVTDPSS 222 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC--------HHHHHHHHHhCCeEEeecc
Confidence 456789999999999999999999999999887532 1233445556655544433
No 495
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.43 E-value=0.22 Score=40.91 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 48999999999999999999986 79999874
No 496
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.39 E-value=0.21 Score=42.37 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=29.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
++|+|||+|.+|.-+|..|++.|..+|++..|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 469999999999999999999984479999986
No 497
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.37 E-value=0.59 Score=41.54 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEEC-CEEEEccccccc
Q psy16200 116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA-NYIISAFGSTLL 180 (183)
Q Consensus 116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~ 180 (183)
.+++.|+++++++.+.++..++++|+++.+. .+++...+.+ +.||+|+|--.+
T Consensus 217 ~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~------------~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 217 AALAAGVPLWTNTPLTELIVEDGRVVGVVVV------------RDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCCEEEEEEEE------------ECCeEEEEEecceEEEecCCccC
Confidence 4567899999999999987667889988763 2455667888 479999986544
No 498
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.34 E-value=1.4 Score=37.24 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCceEEEEEeecCCcCCCC--HHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCC
Q psy16200 81 AFDCATSALRCGANKVLVVFRKGCTNIRAV--PEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK 153 (183)
Q Consensus 81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~--~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~ 153 (183)
.-|+..++.++|.. +-.++.++. .|.+ ... ...+.+.||+++++..+.+|. ++.. .+++
T Consensus 56 ~~d~~~fF~~~Gi~--~~~e~~grv-fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~-~v~~-------- 121 (376)
T TIGR03862 56 AVALQDWARGLGIE--TFVGSSGRV-FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTL-RFET-------- 121 (376)
T ss_pred HHHHHHHHHHCCCc--eEECCCCEE-CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcE-EEEE--------
Confidence 45677888888863 234444442 4543 222 234577899999999999983 3322 2332
Q ss_pred CCeecCCCceEEEECCEEEEcccccc
Q psy16200 154 GEWVEDEEQRIKLKANYIISAFGSTL 179 (183)
Q Consensus 154 ~~~~~~~g~~~~i~~D~Vi~a~G~~p 179 (183)
......+.||.||+|+|-.+
T Consensus 122 ------~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 122 ------PDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred ------CCCceEEecCEEEEcCCCcc
Confidence 11223589999999999865
No 499
>PLN02494 adenosylhomocysteinase
Probab=92.31 E-value=0.24 Score=43.01 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103 (183)
Q Consensus 68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~ 103 (183)
.+++|+|+|.|.+|..+|..+..+|+ +|.++.+.+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 35669999999999999999999998 699887654
No 500
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.26 Score=38.56 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.7
Q ss_pred cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200 69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK 102 (183)
Q Consensus 69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~ 102 (183)
+++|+|+|| |.+|..++..|+++|. +|.++.|+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 456999986 9999999999999997 69998775
Done!