RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16200
(183 letters)
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 202 bits (515), Expect = 7e-61
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
L+++GY A FIGIG P IFQGLT++ GFYTSK FLP VA SSK G+C L
Sbjct: 271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA--CHSPL 328
Query: 66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179
PF+SP +V VK +I +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L
Sbjct: 389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVL 442
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 65.2 bits (160), Expect = 4e-13
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 5 KLRKDGYTAIFIGIG--KPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCK 61
+LR+ + A+ + G K P G + + +L + G
Sbjct: 203 ELRRK-HVAVLVATGVYKARDIKAP---G--SGLGNIVAALDYLTT-SNKVSLGDTVEAY 255
Query: 62 KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
+ G V+VLG GDTA DC +A+R GA V ++R+ N+ EV A EE
Sbjct: 256 ENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEE 315
Query: 121 KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW-------VEDEEQRIKLKANYIIS 173
EF+ +P D + G++ R +E E + +A+ +I
Sbjct: 316 GVEFIWQAAPEGF-TGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTV--QADLVIK 372
Query: 174 AFG 176
A G
Sbjct: 373 ALG 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-05
Identities = 44/206 (21%), Positives = 64/206 (31%), Gaps = 69/206 (33%)
Query: 5 KLRKDGYTA-IFIGIGKPNANVIPIFQGLTEEMGFYT---SKTFL-------PRVATSSK 53
++R + Y+A IF I IF+ + E YT K L P + K
Sbjct: 1683 RIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 54 ---KGLCGGCKKESLPILKGTVIVLGAG------DTAFDCATSALRCGANKVL------- 97
+ L K + L T AG +AL A+ V+
Sbjct: 1742 AAFEDL----KSKGLIPADATF----AGHSLGEY--------AALASLAD-VMSIESLVE 1784
Query: 98 VVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM---SPVQVDVKDNKIAGMQFNRTEQNEKG 154
VVF +G T AVP +E M +P +V ++ A G
Sbjct: 1785 VVFYRGMTMQVAVPR------DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 155 EWVEDEEQRIKLKANY-------IIS 173
VE I NY + +
Sbjct: 1839 WLVE-----I---VNYNVENQQYVAA 1856
Score = 31.6 bits (71), Expect = 0.15
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 13 AIFIGIGKPNANVIPIF--QGLTE----EM-GFY-TSKTFLPRVATSSKKGL 56
A+F +G+ NA ++ IF QG T+ E+ Y T + + S + L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Score = 28.1 bits (62), Expect = 2.0
Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 88/222 (39%)
Query: 11 YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG 70
Y +G + +G T G + ++
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGAT-------------------------GHSQG---LV-- 278
Query: 71 TVIVLGAGDT--AF-DCATSALRCGANKVLVVFRKGC--------TNIRA---------- 109
T + + D+ +F A+ V+F G T++
Sbjct: 279 TAVAIAETDSWESFFVSVRKAIT-------VLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 110 --VP-----------EEVQLAWEEKCEFLPFMSPVQVDVK---DNK-IAG-----MQFNR 147
VP E+VQ + LP V++ + N ++G N
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 148 TEQNEKGEWVEDE-----EQR-IKLKANYI-ISA-FGSTLLD 181
T + K D+ +R +K ++ +++ F S LL
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 40.7 bits (96), Expect = 1e-04
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV----QLAWEEKCEFLP 126
V+++G GD+A D L A V +V R + + + +
Sbjct: 165 RVVIVGGGDSALDWTV-GLIKNAASVTLVHRG--HEFQGHGKTAHEVERARANGTIDVYL 221
Query: 127 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
++ + + + ++ ++ ++A+ ++ G
Sbjct: 222 ETEVASIEESNGVLTRVHLRSSDGSKW-----------TVEADRLLILIG 260
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 39.1 bits (92), Expect = 3e-04
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 130
V +LG GD+A D A L A +V ++ R+ RA V+ K L P
Sbjct: 156 RVAILGGGDSAVDWAL-MLEPIAKEVSIIHRR--DKFRAHEHSVENLHASKVNVLTPFVP 212
Query: 131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
++ + ++KI + + + K L+ + +I +G
Sbjct: 213 AEL-IGEDKIEQLVLEEVKGDRK----------EILEIDDLIVNYG 247
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 36.4 bits (85), Expect = 0.002
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 18/110 (16%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLP 126
V+++G GD+A D A L A ++ ++ R+ RA V+ E + E L
Sbjct: 154 RVLIVGGGDSAVDWAL-NLLDTARRITLIHRR--PQFRAHEASVKELMKAHEEGRLEVLT 210
Query: 127 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
+V+ D ++ + E+ + L+ + ++ G
Sbjct: 211 PYELRRVE-GDERVRWAVVFHNQTQEE----------LALEVDAVLILAG 249
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 36.4 bits (84), Expect = 0.004
Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 35/179 (19%)
Query: 8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCKKESL- 65
+ Y A+ +G + ++ I E++ G + F+ E +
Sbjct: 94 SERYDAVIYAVGAQSDRMLNI---PGEDLPGSIAAVDFVGWY--------NAHPHFEQVS 142
Query: 66 PILKG-TVIVLGAGDTAFDCATSALRC--------------------GANKVLVVFRKGC 104
P L G +V+G G+ A D A L G +V++V R+G
Sbjct: 143 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202
Query: 105 TNIRAVPEEVQ-LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162
E++ LA + + + + + ++ A + + + + E +
Sbjct: 203 LQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPR 261
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 30.8 bits (69), Expect = 0.18
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 63 ESLPI---LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAW 118
+SL + LK ++++G G+ + G K+ +V +I +
Sbjct: 3 KSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNK 61
Query: 119 EEK 121
++
Sbjct: 62 DQP 64
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer
sandwich, unknown function; 2.50A {Streptococcus mutans}
Length = 311
Score = 30.6 bits (70), Expect = 0.21
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 28/131 (21%)
Query: 14 IFIGIGKPNANVI----PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILK 69
+ G + + + + +K + +S KG G
Sbjct: 15 VPRGSHMASMTGGQQMGRGSMIIDDLL----TKKIIKPRPLNSHKGTFG----------- 59
Query: 70 GTVIVLGAGDT-----AFDCATSALRCGANKVLVVFRKGCTNI--RAVPEEVQLAWEEKC 122
V+++G G+ A + + GA V V K +PE + EK
Sbjct: 60 -RVLLIG-GNYPYGGAIIMAALACVNSGAGLVTVATHKDNITALHSHLPEAMAFDMVEKD 117
Query: 123 EFLPFMSPVQV 133
++ V
Sbjct: 118 RLSEQITAADV 128
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.0 bits (68), Expect = 0.39
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
V+V+GAG F+ + +A + GA V++V
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGA-NVILV 150
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural
genomics, PSI, protein structure initiative; NMR
{Bacillus subtilis} SCOP: d.186.2.1
Length = 110
Score = 28.7 bits (63), Expect = 0.43
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 112 EEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK 167
E++ WEE + P+ P QV++ +++ + R + E + + +E IKL
Sbjct: 44 AELETWWEELQKNPPYEPPDQVELLAQELSQEKLARKQLEELNKTLGNELSDIKLS 99
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 29.6 bits (67), Expect = 0.52
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
V+V G G + A R GA VLV+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGA-DVLVL 70
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 29.1 bits (66), Expect = 0.71
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 62 KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
+ L L TV+V+GAG+ A S + G VLV R T RA V+LA +
Sbjct: 159 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR---TYERA----VELARDL 211
Query: 121 KCEFLPF 127
E + F
Sbjct: 212 GGEAVRF 218
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like
superfamily, structur genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus
faecalis} PDB: 2r3e_A
Length = 310
Score = 28.7 bits (65), Expect = 0.93
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 70 GTVIVLGAGDT-----AFDCATSALRCGANKVLVVFRKGCTNI--RAVPEEVQLAWEEKC 122
G V+++G G+ + + GA V+ PE + + +EE
Sbjct: 45 GRVVLIG-GNRQYGGAIIMSTEACINSGAGLTTVITDVKNHGPLHARCPEAMVVGFEETV 103
Query: 123 EFLPFMSPVQV 133
+ V
Sbjct: 104 LLTNVVEQADV 114
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.8 bits (64), Expect = 1.1
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127
V VLG G A GA KV V R+ + + E E
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGA-KVKVGARE--------SDLLARIAEMGMEPFHI 204
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 28.5 bits (64), Expect = 1.2
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV----FRKGCTN-----IRAVPEEVQLA 117
V+++G+G A SA GA KV+++ G T + A + Q
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNTKLAAGGMNAAETKPQAK 182
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding;
HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 27.9 bits (63), Expect = 1.8
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVV 99
+ V+V G A + G ++++VV
Sbjct: 32 GEDKVVVAVIGSQADAFVPALSVNGVDELVVV 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.1
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 29/142 (20%)
Query: 4 LKLRKDGYTAIFIG---IGKPNANVIPIFQGLTEEMGFYTSK---TFLPRVATSSKKGLC 57
+ D Y IG + + +F+ + + F K A+ S
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 58 GGCKKESLPILKGTVIVLGAGDTAFDCATSAL-----RCGANKVLVVFRKGCTNIRAVPE 112
K I D ++ +A+ + N + T++
Sbjct: 525 QQLKFYKPYICD--------NDPKYERLVNAILDFLPKIEEN----LICSKYTDL----- 567
Query: 113 EVQLAWEEKCEFLPFMSPVQVD 134
+++A + E + + QV
Sbjct: 568 -LRIALMAEDEAIFEEAHKQVQ 588
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold,
hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP:
c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Length = 484
Score = 28.0 bits (62), Expect = 2.2
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 26/82 (31%)
Query: 12 TAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT 71
T + IG+G NA I + + +L + G CGG ++ G
Sbjct: 274 TLVNIGVGPSNAKTI------CDHLAVLRPDVWL-MI------GHCGGLRES---QAIGD 317
Query: 72 VIVLGAGDTAFDCATSALRCGA 93
++ A + LR
Sbjct: 318 YVL----------AHAYLRDDH 329
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 27.7 bits (61), Expect = 2.5
Identities = 4/31 (12%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGAN-KVLVVFR 101
+ ++G G +A + + + ++ R
Sbjct: 230 IAIIGGGQSAAEAFIDLNDSYPSVQADMILR 260
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 27.4 bits (61), Expect = 2.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVV 99
L + + AG + L G +K+ V
Sbjct: 35 LNCQLEAVVAGTGLKEIEKQILPYGVDKLHVF 66
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 27.3 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
V+V+G+G F A SA GA KV+++
Sbjct: 129 VVVVGSGGAGFSAAISATDSGA-KVILI 155
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 27.1 bits (61), Expect = 3.8
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 19/100 (19%)
Query: 16 IGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVL 75
+G+ P + L + R ++ KG G VL
Sbjct: 200 LGVFNPIYEIPTDTFLLEKSD-----LKLPLRDKKNAHKGDYG------------HAHVL 242
Query: 76 GAGDT--AFDCATSALRCGANKVLVVFRKGCTNIRAVPEE 113
+ A SAL G+ V V + P E
Sbjct: 243 LGKHSGAGLLSALSALSFGSGVVSVQALECEITSNNKPLE 282
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 26.8 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 31 GLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKE---SLPILKGTVIVLGAGDTA 81
+ +E LP++A +K + K E L I T I+LGA D
Sbjct: 198 KIKKEQ--------LPKIAQPTK--VIFPIKTEYVKKLGIDSDTKIILGASDGY 241
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 26.5 bits (59), Expect = 5.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVV 99
TV V GAG A SA GA V+V
Sbjct: 188 TVYVAGAGPVGLAAAASARLLGAAVVIVG 216
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 26.9 bits (59), Expect = 5.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 53
KLR + I ++ IFQ + YT+ LP+ + +
Sbjct: 140 KLRSKRVAPVLIREITRRVHLEGIFQAV------YTAGVVLPKPVGTCR 182
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 26.1 bits (58), Expect = 7.1
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 70 GTVIVLGAGDTAFDCATSALRCGANKVLVV 99
V + GAG A A GA V+V
Sbjct: 187 SHVYIAGAGPVGRCAAAGARLLGAACVIVG 216
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein
structure initiative, NESG, CPR biology; 2.50A
{Clostridium perfringens}
Length = 128
Score = 25.4 bits (55), Expect = 7.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE 161
+ + V D KI ++N ED++
Sbjct: 23 LSIKVSDGKITEAKYNEFNGETNAMKREDKD 53
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 7.3
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 147 RTEQNEK-GEWVEDEEQRIKLK 167
T++ E +W E++ +R++
Sbjct: 80 LTQEPESIRKWREEQRKRLQEL 101
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 26.3 bits (57), Expect = 7.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 53
KLR + I ++ IFQ + YT+ LP+ + +
Sbjct: 253 KLRSKRVAPVLIREITRRVHLEGIFQAV------YTAGVVLPKPVGTCR 295
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics,
PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis}
PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A*
3rqq_A* 3rqx_A* 1kyh_A
Length = 279
Score = 25.5 bits (57), Expect = 9.9
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 70 GTVIVLGAGDT-----AFDCATSALRCGANKVLVVFRKGCTNI--RAVPE 112
GT ++L G A A+R G K+++ + + +PE
Sbjct: 31 GTALLLA-GSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPLIVPVLPE 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,766,063
Number of extensions: 158882
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 39
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)