RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16200
(183 letters)
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 123 bits (309), Expect = 6e-37
Identities = 101/154 (65%), Positives = 119/154 (77%), Gaps = 2/154 (1%)
Query: 24 NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD 83
IFQGLT++ GFYTSK FLP VA SSK G+C LP ++G VIVLGAGDTAFD
Sbjct: 2 KTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSP--LPSIRGAVIVLGAGDTAFD 59
Query: 84 CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM 143
CATSALRCGA +V +VFRKG NIRAVPEEV+LA EEKCEFLPF+SP +V VK +I +
Sbjct: 60 CATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV 119
Query: 144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 177
QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS
Sbjct: 120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 162
Score = 39.9 bits (92), Expect = 4e-05
Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 24/129 (18%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS-P 130
V ++G G FD A + G + + + + +P
Sbjct: 32 VAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQ 91
Query: 131 VQVDVKDNKIAGMQFNRT-----------------------EQNEKGEWVEDEEQRIKLK 167
+ + + G +T + ++ G V + L
Sbjct: 92 IVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLA 151
Query: 168 ANYIISAFG 176
+ ++ G
Sbjct: 152 VDNVVICAG 160
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 39.7 bits (91), Expect = 6e-05
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 131
+ +LGAG + CA+ R G + + + ++ L+ E +F V
Sbjct: 7 IALLGAGPASISCASFLARLGYSDITIFEKQ--------EYVGGLSTSEIPQFRLPYDVV 58
Query: 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
+++ K G++ + + E + + KA +I
Sbjct: 59 NFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLP 103
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 36.9 bits (84), Expect = 7e-04
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 8/113 (7%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVPEEVQLAWEEKCE---- 123
I +G G + G +++V C + VP + +
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104
Query: 124 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
F + K I + + + + + +L YI++
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA 157
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 34.9 bits (79), Expect = 0.003
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 66 PILKG-TVIVLGAGDTAFDCATSAL--------------------RCGANKVLVVFRKGC 104
P L G +V+G G+ A D A L G +V++V R+G
Sbjct: 35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94
Query: 105 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK 153
E++ + + P ++D ++ A +QN K
Sbjct: 95 LQAAFTTLELRELADLD-GVDVVIDPAELDGITDEDAAAVGKVCKQNIK 142
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 33.2 bits (74), Expect = 0.008
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 1/116 (0%)
Query: 68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF 127
LK V+VLGAG + + G + L+ + + +
Sbjct: 2 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKI 60
Query: 128 MSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND 183
+ + + G+ + + D A +L ND
Sbjct: 61 RLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLAND 116
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 32.9 bits (74), Expect = 0.013
Identities = 12/109 (11%), Positives = 36/109 (33%), Gaps = 3/109 (2%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP--FMS 129
+++LG+G + A A R + +++ EV+ + + M
Sbjct: 8 LLILGSGPAGYTAAVYAARANL-QPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLME 66
Query: 130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST 178
+ + + + + + + + + +I A G++
Sbjct: 67 RMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGAS 115
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 32.5 bits (73), Expect = 0.018
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK---------GCTNIRAVPEEVQLAWEEKC 122
+V+GAG + A A + G KV +V + GC +A+ + K
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKH 64
Query: 123 EFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKG 154
+ V + K+ + + ++ G
Sbjct: 65 SEEMGIKAENVTIDFAKVQEWKASVVKKLTGG 96
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 32.0 bits (71), Expect = 0.023
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
V+++G+G A + R G L+ R G + V E ++ +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQ 56
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 31.7 bits (71), Expect = 0.025
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 63 ESLPI---LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAW 118
+SL + LK ++++G G+ + G K+ +V +I +
Sbjct: 3 KSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNK 61
Query: 119 EEK 121
++
Sbjct: 62 DQP 64
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 31.8 bits (71), Expect = 0.025
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 131
+ ++G+G A A A R K L+ +I + E P
Sbjct: 8 LCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 66
Query: 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165
+ +F T E V+ + K
Sbjct: 67 VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFK 100
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.3 bits (70), Expect = 0.035
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 56 LCGGCKKESLPILK----GTVIVLGAGDTAFDC-ATSALRCGANKVLVV 99
L G +L TV ++G D A + A A+ G L +
Sbjct: 131 LASGIPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 179
>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
p450 systems {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 31.0 bits (69), Expect = 0.062
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 21/77 (27%)
Query: 66 PILKG-TVIVLGAGDTAFDCATSALR--------------------CGANKVLVVFRKGC 104
P L T ++LG G+ A D A L V +V R+G
Sbjct: 35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94
Query: 105 TNIRAVPEEVQLAWEEK 121
+ +E++ +
Sbjct: 95 LQVAFTIKELREMIQLP 111
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 30.6 bits (67), Expect = 0.073
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG-------CTNIRAVPEEVQLAWEEKCEF 124
VIVLG+ ++ L + + + KG + +V+ +
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62
Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ 162
M V+V N + Q + V EE+
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEER 100
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 30.4 bits (67), Expect = 0.11
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 130
VIV+GAG + A + + G K ++ + + L S
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSS 63
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 29.9 bits (66), Expect = 0.15
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----------CTNIRAVPEEVQLAWEEK 121
V+VLG G + A +A G KV +V R C +A+ + E +
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR 67
Query: 122 CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL 166
+ + ++ + + + + G + +++ +
Sbjct: 68 HLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDV 112
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 28.5 bits (63), Expect = 0.32
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 62 KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
+ L L TV+V+GAG+ A S + G VLV R + ++
Sbjct: 16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY-ERAVELARDLGGEAVR 74
Query: 121 KCEFLPFMSPVQV 133
E + ++ V
Sbjct: 75 FDELVDHLARSDV 87
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 27.8 bits (61), Expect = 0.34
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 65 LPI---LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
LPI L+ +++G GD A A L GA + V E L E
Sbjct: 4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFIPQFTVWANEGMLTLVE 62
Query: 121 K 121
Sbjct: 63 G 63
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 28.4 bits (62), Expect = 0.47
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
++V+GAG + +A +V V+
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVI 33
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.1 bits (61), Expect = 0.64
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVP 111
+IV+G G A A R A KV +V + C N+ VP
Sbjct: 4 LIVIGGGSGGMAAARRAARHNA-KVALVEKSRLGGTCVNVGCVP 46
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 27.6 bits (60), Expect = 0.84
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK----GCTNIRAVPEEVQLAWEEKCEFLPF 127
+V+G G A A GA + VV C N+ VP++V EF+
Sbjct: 6 YLVIGGGSGGLASARRAAELGA-RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHD 64
Query: 128 MSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
+ + K + + II
Sbjct: 65 HADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHA 113
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 27.4 bits (59), Expect = 0.90
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 72 VIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 130
V+++G G + A G + +V P + ++
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 131 VQVDVKDNKIAGMQFNRTEQNEKGEWV 157
N T N + V
Sbjct: 66 PDAYAAQNIQLLGGTQVTAINRDRQQV 92
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 27.6 bits (60), Expect = 0.93
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK--GCTNIRAVPEEVQLAWEEKCEFLPFMS 129
V+++G+G A SA GA KV+++ ++ N + + A + L
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 84
Query: 130 PVQVDVKDNKIAGMQFNRTEQN 151
Q+ + D G N E
Sbjct: 85 KKQIMIDDTMKGGRNINDPELV 106
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 27.0 bits (58), Expect = 1.2
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 131
+I++G G A A + KV+V+ T + C M
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQA 64
Query: 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165
+ + K + + E K +W + E
Sbjct: 65 ALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQN 98
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 27.1 bits (59), Expect = 1.3
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103
V+++G G + A A + G K + ++G
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG 36
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 26.8 bits (58), Expect = 1.4
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK----GCTNIRAVPEEVQLAWEEKCEFLPF 127
I +G G A G K ++ K C N+ VP++V + E +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHM 63
Query: 128 MSPVQ-VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK 165
P D NK + E +
Sbjct: 64 YGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLG 102
>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 26.2 bits (57), Expect = 1.4
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-QLAWEEKCEFLPFMS 129
V V+G G+TA + A + L+ R G + + + + +
Sbjct: 29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRT 88
Query: 130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVE 158
+V + G++ T+ ++ E ++
Sbjct: 89 LEEVTGDQMGVTGVRLRDTQNSDNIESLD 117
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 26.9 bits (58), Expect = 1.4
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
V+V+GAG F+ + +A + GA V++V
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGA-NVILV 48
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 26.9 bits (58), Expect = 1.4
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVPEEVQLAWEEK---CEF 124
++++G G + A A + G ++V + C NI +P + + E+
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASR 66
Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYII 172
SP+ + V ++ Q + +K ++
Sbjct: 67 FTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVV 114
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 26.7 bits (57), Expect = 1.5
Identities = 3/31 (9%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK 102
++ A T A ++ + +++
Sbjct: 183 RLIADATFTGHRVAREIEEANP-QIAIPYKR 212
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 26.8 bits (58), Expect = 1.6
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 42 KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101
++ LP S KG G + I+ G+ + GA +L+ G V +
Sbjct: 6 RSLLPERPRDSHKGTYG-----KVLIIAGSRLYSGA---PVLSGMGSLKVGTGLVKLAVP 57
Query: 102 K 102
Sbjct: 58 F 58
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 26.6 bits (58), Expect = 1.7
Identities = 15/70 (21%), Positives = 21/70 (30%)
Query: 55 GLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV 114
K I + V+V G G ++ L G V+ V RKG N +
Sbjct: 12 AFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCL 71
Query: 115 QLAWEEKCEF 124
E
Sbjct: 72 NEYHLEIARI 81
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
562]}
Length = 477
Score = 26.8 bits (59), Expect = 1.8
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 1 MPTLKL-RKDG--YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLC 57
MP L DG T + IG+G NA I + + +L + G C
Sbjct: 253 MPAWHLITADGQGITLVNIGVGPSNAKTI------CDHLAVLRPDVWL-MI------GHC 299
Query: 58 GGCKKESLPILKGTVIV 74
GG ++ G ++
Sbjct: 300 GGLRES---QAIGDYVL 313
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 26.5 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
V+V+G+G F A SA GA KV+++
Sbjct: 19 VVVVGSGGAGFSAAISATDSGA-KVILI 45
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis
[TaxId: 1423]}
Length = 275
Score = 26.4 bits (57), Expect = 2.1
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 42 KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR 101
+ LP S KG G + +L G+ + GA A A+R G K+++
Sbjct: 11 RATLPERDAESHKGTYG-----TALLLAGSDDMPGA---ALLAGLGAMRSGLGKLVIGTS 62
Query: 102 K 102
+
Sbjct: 63 E 63
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 26.2 bits (56), Expect = 2.3
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 72 VIVLGAGDTAFDCATSALRCGAN--KVLVVFRKG----CTNIRAVP 111
+++LG G ++ A A +V V+ G VP
Sbjct: 4 IVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVP 49
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit
alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Length = 166
Score = 25.9 bits (57), Expect = 2.5
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 10 GYTAIFIGIGKPNANVIPIFQGLTEEMGF 38
G T + +G + IF LT +
Sbjct: 133 GSTGDIVLLGTQTPQLEEIFFELTHNLNT 161
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 25.8 bits (55), Expect = 2.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
++V+GAG + A +A +V V+
Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVAVI 33
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 26.0 bits (56), Expect = 3.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 64 SLPILKGTVIVLGAGDTAFDCATSALRCGANKVLV 98
LP+ + +V+GAG A + G L+
Sbjct: 2 KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALL 36
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 25.6 bits (55), Expect = 3.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG 103
V+++G G + A A + G V ++G
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG 38
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 25.5 bits (54), Expect = 4.0
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
+V+G G A + + G +V+
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGL-STIVL 34
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 165
Score = 25.1 bits (55), Expect = 4.0
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 53
KLR + I N I+Q L YT + LP T+ +
Sbjct: 123 KLRNKRLAPVLIKEITRRVNKQNIWQAL------YTGGSILPTPLTTCR 165
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 25.1 bits (55), Expect = 4.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 53
KLR + I ++ IFQ + YT+ LP+ + +
Sbjct: 99 KLRSKRVAPVLIREITRRVHLEGIFQAV------YTAGVVLPKPVGTCR 141
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 185
Score = 25.2 bits (55), Expect = 4.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 5 KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSK 53
+LR T + I N I+ L YT+ LP ++ +
Sbjct: 143 QLRSKRLTPVLIKEITRRVNKCDIWHAL------YTAGIVLPAPVSTCR 185
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 25.3 bits (53), Expect = 5.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
VIV+GAG + A G +L++
Sbjct: 3 VIVVGAGMSGISAAKRLSEAGITDLLIL 30
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 24.7 bits (52), Expect = 5.6
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM 128
V+++G G F+ A L ++ + + + + P+
Sbjct: 3 VVIVGNGPGGFELA-KQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYS 58
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 25.0 bits (53), Expect = 5.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
VIV+G G + A A GA VL++
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGA-NVLLL 31
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 24.8 bits (53), Expect = 5.8
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 72 VIVLGAGDTAFDCATSALRCGANKVLVV 99
I++GAG CA + G V V
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGK-SVTVF 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,367
Number of extensions: 30186
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 48
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)