BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16201
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 269 bits (687), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 145/175 (82%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48 NCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMN 167
Query: 131 ISQIRPP--DAKVDFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR P ++ P+ KIAL+G GPAS+SCA+FL+R+GY DITI+EK Y
Sbjct: 168 IPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRIV+GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 269 bits (687), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 145/175 (82%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48 NCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMN 167
Query: 131 ISQIRPP--DAKVDFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR P ++ P+ KIAL+G GPAS+SCA+FL+R+GY DITI+EK Y
Sbjct: 168 IPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRIV+GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 20 NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAI 79
+F +I + S+ A ++A+RC +C CQ CP +I ++ S A +
Sbjct: 1 QDFAEI-YARFSDERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVS 59
Query: 80 FSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDA 139
+ N CG +CP LC G C + + G + IG ++++ + D G + R P
Sbjct: 60 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSR 119
Query: 140 KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
++ + +IG GPA L+ A L GY ++ +Y++ YD
Sbjct: 120 ELGL---SVGVIGAGPAGLAAAEELRAKGY-EVHVYDR--YD 155
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 6 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 53
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 73
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 73
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 73
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 6 DKNVAIIGGGPVGLTXAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 53
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 27 DKNVAIIGGGPVGLTXAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 74
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTS 196
+K+A+IG GPA L ++G+ D+TIYE++ + V ++ GT S
Sbjct: 24 SKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAFPRY-RVGESLLPGTMS 72
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
KI +IG GP L A L+ +GY + +YE N
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECN 42
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERRTPDYV 39
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDYV 39
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQTPDEV 39
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ T D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERTTPDYV 39
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+A+IG GPA LS + +R G ++ +EK
Sbjct: 7 VAIIGGGPAGLSAGLYATRGGLKNVVXFEKG 37
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCA-TFLSRMGYDDITIYEKN 178
KIA+IG GP+ L A L+ +D +T++E+
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR 42
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCA-TFLSRMGYDDITIYEKN 178
KIA+IG GP+ L A L+ +D +T++E+
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR 40
>pdb|1MGT|A Chain A, Crystal Structure Of O6-Methylguanine-Dna
Methyltransferase From Hyperthermophilic Archaeon
Pyrococcus Kodakaraensis Strain Kod1
Length = 174
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 23/78 (29%)
Query: 142 DFPDTKI-ALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT---------------- 184
D+P+ LIG L A+FL + ++ +T +EK Y+ +T
Sbjct: 62 DYPEKVFKVLIG----ELDNASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAK 117
Query: 185 --NVSPRIVKGTTSRHLY 200
N SPR V G R+ Y
Sbjct: 118 ALNTSPRAVGGAMKRNPY 135
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
P +I ++G G A L L+R G+ D+TI E N
Sbjct: 43 PPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEAN 76
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting
Chitinase-Like Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting
Chitinase-Like Protein, Si-Clp
Length = 393
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 27 HTTLSERGALKEASRCL----KCADAPCQKSCPTQIDIKSFITSISHKNY 72
HTTLS+ A K AS+ L + +D P Q D+K+ + H++Y
Sbjct: 18 HTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSY 67
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 149 ALIGCGPASLSCATFLSRMGYDDITIYEKN 178
A+IG GPA LS + +R G + ++EK
Sbjct: 5 AIIGGGPAGLSAGLYATRGGVKNAVLFEKG 34
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
F + IA+IG G +++ FL++ G I+ +NT+
Sbjct: 175 FRNKPIAVIGGGDSAMEEGNFLTKYGSQVYIIHRRNTF 212
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYD 170
D ++ ++G GP+ L A L GYD
Sbjct: 391 DARVLVVGAGPSGLEAARALGVRGYD 416
>pdb|3M8U|A Chain A, Crystal Structure Of Glutathione-Binding Protein A (Gbpa)
From Haemophilus Parasuis Sh0165 In Complex With
Glutathione Disulfide (Gssg)
Length = 522
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 126 FKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-MVT 184
FK M S + KVD KI L + ATFL+ +G D I+IY D M+
Sbjct: 117 FKAMKFSTLLKSVEKVDMHTVKITL------NRQDATFLASLGMDFISIYSAEYADKMLA 170
Query: 185 NVSPRIVKGT 194
P + T
Sbjct: 171 AGKPETIDTT 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,138,577
Number of Sequences: 62578
Number of extensions: 284756
Number of successful extensions: 756
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 48
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)