BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16201
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd
PE=2 SV=1
Length = 1022
Score = 280 bits (715), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 138/184 (75%), Positives = 155/184 (84%), Gaps = 11/184 (5%)
Query: 2 PEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIK 61
PE+S + +N L NNFDDIKHTTLSERGAL+EA RCLKCADAPCQKSCPT +DIK
Sbjct: 45 PERSCDSCVN------LENNFDDIKHTTLSERGALREALRCLKCADAPCQKSCPTNLDIK 98
Query: 62 SFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQF 121
SFITSIS+KNYYGAAKAI SDNPLGLTCGMVCPTSDLC+GGCNLYA+EEGPINIGGLQQF
Sbjct: 99 SFITSISNKNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLYASEEGPINIGGLQQF 158
Query: 122 ATEVFKDMGISQIRPPDAKV--DFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYE 176
ATEVF MGI QIR P+ + P T+IALIGCGPAS+SCA+FL+R+GYD+ITI+E
Sbjct: 159 ATEVFSKMGIPQIRNPELPTADNMPKSFHTRIALIGCGPASISCASFLARLGYDNITIFE 218
Query: 177 KNTY 180
K Y
Sbjct: 219 KQKY 222
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRIV+GTTS H++GP QGSFLNIELISEKTA W CK ++ + +F
Sbjct: 581 DLVTNVSPRIVRGTTSGHIFGPGQGSFLNIELISEKTAAYW-----CKSVAELKADF 632
>sp|Q28007|DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Bos taurus GN=DPYD
PE=1 SV=1
Length = 1025
Score = 275 bits (704), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/175 (75%), Positives = 146/175 (83%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSISNK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQ+ATEVFK M
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQYATEVFKAMN 167
Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR PP+ + KIAL+G GPAS+SCA+FL+R+GY+DITI+EK Y
Sbjct: 168 IPQIRNPSLPPPEKMPEAYSAKIALLGAGPASISCASFLARLGYNDITIFEKQEY 222
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRI++GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F
Sbjct: 581 DIVTNVSPRIIRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632
>sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD
PE=1 SV=2
Length = 1025
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/175 (75%), Positives = 144/175 (82%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQFATEVFK M
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMS 167
Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR PP+ + KIAL G GPAS+SCA+FL+R+GY DITI+EK Y
Sbjct: 168 IPQIRNPSLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRI++GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F
Sbjct: 581 DIVTNVSPRIIRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632
>sp|Q5R895|DPYD_PONAB Dihydropyrimidine dehydrogenase [NADP(+)] OS=Pongo abelii GN=DPYD
PE=2 SV=1
Length = 1025
Score = 273 bits (698), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 143/175 (81%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPT DLC+GGCNLYA EEGPINIGGLQQFATEVFK M
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTPDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMS 167
Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR PP+ + KIAL G GPAS+SCA+FL+R+GY DITI+EK Y
Sbjct: 168 IPQIRNPFLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRIV+GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632
>sp|Q8CHR6|DPYD_MOUSE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Mus musculus GN=Dpyd
PE=2 SV=1
Length = 1025
Score = 272 bits (696), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 146/175 (83%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N FT L +NFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48 NCFTCEKLESNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+AAEEGPINIGGLQQFATEVFK M
Sbjct: 108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHAAEEGPINIGGLQQFATEVFKAMN 167
Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR PP+ + KIAL G GPAS+SCA+FL+R+GY +ITI+EK Y
Sbjct: 168 IPQIRNPSLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSNITIFEKQEY 222
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRI++GTTS LYGP Q SFLNIELISEKTA W C ++ + +F
Sbjct: 581 DIVTNVSPRIIRGTTSGPLYGPGQSSFLNIELISEKTAAYW-----CHSVTELKADF 632
>sp|O89000|DPYD_RAT Dihydropyrimidine dehydrogenase [NADP(+)] OS=Rattus norvegicus
GN=Dpyd PE=2 SV=1
Length = 1025
Score = 271 bits (694), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48 NCFICEKLENNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+A EEGPINIGGLQQFATEVFK M
Sbjct: 108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGPINIGGLQQFATEVFKAMN 167
Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR PP+ + KIAL G GPAS+SCA+FL+R+GY DITI+EK Y
Sbjct: 168 IPQIRSPLLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRI++GTTS LYGP Q SFLNIELISEKTA W C ++ + +F
Sbjct: 581 DIVTNVSPRIIRGTTSGPLYGPGQSSFLNIELISEKTAAYW-----CHSVTELKADF 632
>sp|Q28943|DPYD_PIG Dihydropyrimidine dehydrogenase [NADP(+)] OS=Sus scrofa GN=DPYD
PE=1 SV=1
Length = 1025
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/175 (74%), Positives = 144/175 (82%), Gaps = 5/175 (2%)
Query: 11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
N F L NNF DIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48 NCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNK 107
Query: 71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMN 167
Query: 131 ISQIRPP--DAKVDFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
I QIR P ++ P+ KIAL+G GPAS+SCA+FL+R+GY DITI+EK Y
Sbjct: 168 IPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
D+VTNVSPRIV+GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632
>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)]
OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2
Length = 1053
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 141/166 (84%), Gaps = 3/166 (1%)
Query: 18 LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
L N+F DIKHTTLSERGALKEA RCLKCADAPCQKSCPTQ+DIKSFITSIS+KNYYGAA+
Sbjct: 70 LKNDFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDIKSFITSISNKNYYGAAR 129
Query: 78 AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
AI SDNPLGLTCGM+CPTSDLC+G CNL A+EEG INIGGLQQ+A +VFK M + QI
Sbjct: 130 AILSDNPLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVRQIVSK 189
Query: 138 DAKVDFPDT---KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+ + + + +IALIGCGPAS+SCA+FL+R+GY DITIYEK Y
Sbjct: 190 EVRENRNASHKEQIALIGCGPASISCASFLARLGYTDITIYEKRAY 235
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222
D+VTNVSPRIV+G+TS LYGP QGSF+NIELISEK+ W+
Sbjct: 605 DLVTNVSPRIVRGSTSGPLYGPNQGSFMNIELISEKSCEYWL 646
>sp|Q18164|DPYD_CAEEL Dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis elegans
GN=dpyd-1 PE=3 SV=2
Length = 1059
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/166 (71%), Positives = 140/166 (84%), Gaps = 3/166 (1%)
Query: 18 LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
L N+F DIKHTTLSERGALKEA RCLKCADAPCQKSCPTQ+D+KSFITSIS+KNYYGAA+
Sbjct: 70 LKNDFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDVKSFITSISNKNYYGAAR 129
Query: 78 AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
I SDNPLGLTCGM+CPTSDLC+G CNL A+EEG INIGGLQQ+A +VFK M + QI
Sbjct: 130 QILSDNPLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVRQIVSK 189
Query: 138 DAKVDFPDT---KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+ + + + ++ALIGCGPAS+SCA+FL+R+GY DITIYEK Y
Sbjct: 190 EVRENRNASHKEQVALIGCGPASISCASFLARLGYTDITIYEKRAY 235
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222
D+VTNVSPRIV+G+TS LYGP QGSF+NIELISEK+ W+
Sbjct: 595 DLVTNVSPRIVRGSTSGPLYGPNQGSFMNIELISEKSCEYWL 636
>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium
discoideum GN=pyd1 PE=2 SV=1
Length = 1009
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/170 (72%), Positives = 137/170 (80%), Gaps = 5/170 (2%)
Query: 16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGA 75
C L N+F+D+K TTL+ERGAL E++RCLKCADAPCQK CPTQ+DIKSFI+SIS KNYYGA
Sbjct: 52 CELKNDFEDVKPTTLTERGALFESARCLKCADAPCQKGCPTQLDIKSFISSISTKNYYGA 111
Query: 76 AKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIR 135
AK IFSDNPLGLTCGMVCP S LC GCNL A EEGPINIGGLQQFATEVFK M I QIR
Sbjct: 112 AKTIFSDNPLGLTCGMVCPVSSLCQYGCNLAATEEGPINIGGLQQFATEVFKKMNIPQIR 171
Query: 136 PPDAK--VDFPDT---KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
P P++ KIALIGCGP S+SCATFL R+GY D+TI+EK Y
Sbjct: 172 DPSLTPLSQLPESYKAKIALIGCGPTSISCATFLGRLGYTDVTIFEKEQY 221
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 5/60 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK 240
D+VTNVSPRIV+GTTS H +GP QG+FLNIELISEKT + W CK + + +F ++
Sbjct: 579 DLVTNVSPRIVRGTTSGHHFGPGQGAFLNIELISEKTCHYW-----CKAIGELKRDFPDR 633
>sp|P76440|PRET_ECOLI NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT
OS=Escherichia coli (strain K12) GN=preT PE=1 SV=1
Length = 412
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Query: 35 ALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94
A+KEASRCL C DAPC ++CP Q D FI SI +N+ GAA+ I +N LG C VCP
Sbjct: 19 AIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCP 78
Query: 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCG 154
T LC GC A + PI+IG LQ+F T+ + G+ +P + K+A+IG G
Sbjct: 79 TEKLCQSGCT-RAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLG----KVAIIGAG 133
Query: 155 PASLSCATFLSRMGYDDITIYEKNTY 180
PA L + L+ GY D+TIYEK +
Sbjct: 134 PAGLQASVTLTNQGY-DVTIYEKEAH 158
>sp|Q8X645|PRET_ECO57 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Escherichia coli O157:H7 GN=preT PE=3 SV=1
Length = 412
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Query: 35 ALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94
A+KEASRCL C DAPC ++CP Q D FI SI +N+ GAA+ I +N LG C VCP
Sbjct: 19 AIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCP 78
Query: 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCG 154
T LC GC A + PI+IG LQ+F T+ + G+ +P + K+A+IG G
Sbjct: 79 TEKLCQSGCT-RAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLG----KVAIIGAG 133
Query: 155 PASLSCATFLSRMGYDDITIYEKNTY 180
PA L + L+ GY D+TIYEK +
Sbjct: 134 PAGLQASVTLTNQGY-DVTIYEKEAH 158
>sp|Q8Z5A6|PRET_SALTI NAD-dependent dihydropyrimidine dehydrogenase subunit PreT homolog
OS=Salmonella typhi GN=preT PE=3 SV=1
Length = 413
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
Query: 35 ALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94
A+KEASRCL C DAPC ++CP Q D FI SI +N+ GAA+ I +N LG C VCP
Sbjct: 19 AIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCP 78
Query: 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCG 154
T LC GC ++ PI+I LQ+F T+ F+ QI P +K K+A+IG G
Sbjct: 79 TEKLCQRGCTRSGIDK-PIDIARLQRFITD-FEQQTAMQIYQPGSKT---RGKVAIIGAG 133
Query: 155 PASLSCATFLSRMGYDDITIYEKN 178
PA L + L+ +GY D+TIYEK
Sbjct: 134 PAGLQASVTLTHLGY-DVTIYEKQ 156
>sp|Q8ZNL8|PRET_SALTY NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=preT PE=3 SV=1
Length = 413
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
Query: 35 ALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94
A+KEASRCL C DAPC ++CP Q D FI SI +N+ GAA+ I +N LG C VCP
Sbjct: 19 AIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCP 78
Query: 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCG 154
T LC GC ++ PI+I LQ+F T+ F+ QI P +K K+A+IG G
Sbjct: 79 TEKLCQRGCTRSGIDK-PIDIARLQRFITD-FEQQTAMQIYQPGSKT---RGKVAIIGAG 133
Query: 155 PASLSCATFLSRMGYDDITIYEKN 178
PA L + L+ +GY D+TIYEK
Sbjct: 134 PAGLQASVTLTHLGY-DVTIYEKQ 156
>sp|Q8U195|SUDHA_PYRFU Sulfide dehydrogenase subunit alpha OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=sudA PE=1
SV=1
Length = 474
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 35 ALKEASRCLKCAD--APCQKSCPTQIDIKSFITSISH------KNYYGAAKAIFSDNPLG 86
AL+EA RCL+C APC K CP I+I FI ++ K A + I+ DN L
Sbjct: 35 ALREAERCLQCPVEYAPCIKGCPVHINIPGFIKALRENRDNPSKAVREALRIIWRDNTLP 94
Query: 87 LTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGIS-QIRPPDAK-VDFP 144
G VCP + C G C + + PINIG L++F + ++ GI ++ + K +
Sbjct: 95 AITGRVCPQEEQCEGACVVGKVGD-PINIGKLERFVADYAREHGIDDELLLEEIKGIKRN 153
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
K+A+IG GPA L+CA L++MGY ++TIYE
Sbjct: 154 GKKVAIIGAGPAGLTCAADLAKMGY-EVTIYE 184
>sp|P37127|AEGA_ECOLI Protein AegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2
Length = 659
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
Query: 22 FDDIKHTTLSERGALKEASRCLKCAD-APCQKSCPTQIDIKSFITSISHKNYYGAAKAIF 80
FD+I + A +EASRCLKC + + C+ +CP I +I + N A +
Sbjct: 208 FDEI-YLPFRADQAQREASRCLKCGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSH 266
Query: 81 SDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK 140
N L G VCP LC G C + E G + IG ++++ ++ G RP +
Sbjct: 267 QTNTLPEITGRVCPQDRLCEGACTIR-DEHGAVTIGNIERYISDQALAKG---WRPDLSH 322
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
V D ++A+IG GPA L+CA L+R G +T+Y+++
Sbjct: 323 VTKVDKRVAIIGAGPAGLACADVLTRNGV-GVTVYDRH 359
>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain
K12) GN=gltD PE=1 SV=3
Length = 472
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 27 HTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLG 86
+ SE A +A RCL C + C+ CP I +++ + + AA+ N L
Sbjct: 32 YEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLP 91
Query: 87 LTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDT 146
CG VCP LC G C L E G + IG ++++ + +MG RP + V
Sbjct: 92 EVCGRVCPQDRLCEGSCTLN-DEFGAVTIGNIERYINDKAFEMG---WRPDMSGVKQTGK 147
Query: 147 KIALIGCGPASLSCATFLSRMG 168
K+A+IG GPA L+CA L+R G
Sbjct: 148 KVAIIGAGPAGLACADVLTRNG 169
>sp|Q46820|YGFT_ECOLI Uncharacterized protein YgfT OS=Escherichia coli (strain K12)
GN=ygfT PE=3 SV=2
Length = 639
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 7/175 (4%)
Query: 5 SSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCAD-APCQKSCPTQIDIKSF 63
+S G + ++ +F +I + L + A E+ RC+ CA+ A C CP I +
Sbjct: 174 NSRKGADKISASERKTHFGEI-YCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDY 232
Query: 64 ITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFAT 123
I + AA+ + L CG VCP LC G C L G ++IG L+++ T
Sbjct: 233 IRLVQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTL-KDHSGAVSIGNLERYIT 291
Query: 124 EVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ MG RP +KV K+A+IG GPA L CA L+R G + +++++
Sbjct: 292 DTALAMG---WRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRH 342
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GLT1 PE=1 SV=2
Length = 2145
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 30 LSERGALKEASRCLKCADAPC--QKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGL 87
++++ A + +RC+ C C CP I F + + A + N
Sbjct: 1671 ITKKDAKYQTARCMDCGTPFCLSDTGCPLSNIIPKFNELLFKNQWKLALDKLLETNNFPE 1730
Query: 88 TCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATE-VFKDMGISQIRPPDAKVDFPDT 146
G VCP C G C L E+ P+ I +++ + FK+ I PP + F
Sbjct: 1731 FTGRVCPAP--CEGACTLGIIED-PVGIKSVERIIIDNAFKEGWIKPC-PPSTRTGF--- 1783
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ +IG GPA L+CA L+R G+ +T+YE++
Sbjct: 1784 TVGVIGSGPAGLACADMLNRAGH-TVTVYERS 1814
>sp|Q05756|GLTD_AZOBR Glutamate synthase [NADPH] small chain OS=Azospirillum brasilense
GN=gltD PE=1 SV=3
Length = 482
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 20 NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAI 79
+F +I + S+ A ++A+RC +C CQ CP +I ++ S A +
Sbjct: 27 QDFAEI-YARFSDERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVS 85
Query: 80 FSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDA 139
+ N CG +CP LC G C + + G + IG ++++ + D G + R P
Sbjct: 86 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSR 145
Query: 140 KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
++ + +IG GPA L+ A L GY ++ +Y++ YD
Sbjct: 146 ELGL---SVGVIGAGPAGLAAAEELRAKGY-EVHVYDR--YD 181
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
Length = 2111
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 38 EASRCLKCADAPCQK--SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT 95
+ +RC+ C CQ CP I ++ + + + A + N G VCP
Sbjct: 1652 QTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQWKEALTQLLLTNNFPEFTGRVCPA 1711
Query: 96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGP 155
C G C L E P+ I +++ + + G RPP + ++A+IG GP
Sbjct: 1712 P--CEGACTL-GIIESPVGIKSVERAIIDKAWEEGWIVPRPPAERTG---RRVAIIGSGP 1765
Query: 156 ASLSCATFLSRMGYDDITIYEK 177
A L+ A L+R G+ + IYE+
Sbjct: 1766 AGLAAADQLNRAGH-HVVIYER 1786
>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana
GN=GLT1 PE=1 SV=2
Length = 2208
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 38 EASRCLKCADAPCQKS---CPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94
+++RC+ C C + CP I F + + A + N G VCP
Sbjct: 1741 QSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWQEALNRLLETNNFPEFTGRVCP 1800
Query: 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCG 154
C G C L E P++I ++ + + G RPP + K+A+IG G
Sbjct: 1801 AP--CEGSCVL-GIIENPVSIKSIECAIIDKAFEEGWMVPRPPLKRTG---KKVAIIGSG 1854
Query: 155 PASLSCATFLSRMGYDDITIYEKN 178
PA L+ A L++MG+ +T+YE++
Sbjct: 1855 PAGLAAADQLNKMGH-LVTVYERS 1877
>sp|P96219|GLTD_MYCTU Glutamate synthase [NADPH] small chain OS=Mycobacterium
tuberculosis GN=gltD PE=3 SV=1
Length = 488
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTS 96
++A+RC+ C C CP I + + + A + + + N G +CP
Sbjct: 42 QQATRCMDCGIPFCHNGCPLGNLIPEWNDLVRRGRWRDAIERLHATNNFPDFTGRLCPAP 101
Query: 97 DLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPA 156
C C L + P+ I ++ + D G Q RPP +A++G GPA
Sbjct: 102 --CEPACVL-GINQDPVTIKQIELEIIDKAFDEGWVQPRPPRK---LTGQTVAVVGSGPA 155
Query: 157 SLSCATFLSRMGYDDITIYEKN 178
L+ A L+R G+ +T++E+
Sbjct: 156 GLAAAQQLTRAGH-TVTVFERE 176
>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0681900 PE=2 SV=1
Length = 2167
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 38 EASRCLKCADAPCQKS-----CPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMV 92
+++RC+ C C + CP I F + + A + N G V
Sbjct: 1700 QSARCMDCGTPFCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRV 1759
Query: 93 CPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIG 152
CP C G C L E P++I ++ + + G RPP + K+A+IG
Sbjct: 1760 CPAP--CEGSCVL-GIIENPVSIKSIECAIIDKGFEEGWMVPRPPLQRTG---KKVAIIG 1813
Query: 153 CGPASLSCATFLSRMGYDDITIYEK 177
GPA L+ A L++MG+ +T++E+
Sbjct: 1814 SGPAGLAAADQLNKMGH-FVTVFER 1837
>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1
Length = 2194
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 38 EASRCLKCADAPCQKS---CPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94
+++RC+ C C + CP I F + + A + + N G VCP
Sbjct: 1720 QSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWQEALERLLETNNFPEFTGRVCP 1779
Query: 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCG 154
C G C L E P++I ++ + + G RPP V ++A++G G
Sbjct: 1780 AP--CEGSCVL-GIIENPVSIKNIECAIIDKAFEEGWMIPRPP---VKRTGKRVAIVGSG 1833
Query: 155 PASLSCATFLSRMGYDDITIYEK 177
P+ L+ A L++MG+ +T++E+
Sbjct: 1834 PSGLAAADQLNKMGH-IVTVFER 1855
>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os05g0555600 PE=2 SV=2
Length = 2188
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 38 EASRCLKCADAPCQKS-----CPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMV 92
+++RC+ C C + CP I F + ++ A + N G V
Sbjct: 1718 QSARCMDCGTPFCHQEGSGAGCPLGNKIPEFNELVHQNRWHEALDRLLETNNFPEFTGRV 1777
Query: 93 CPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIG 152
CP C G C L + P++I ++ + + G RPP + ++A++G
Sbjct: 1778 CPAP--CEGSCVL-GIIDNPVSIKSIECAIIDKGFEEGWMVPRPPLRRTG---KRVAIVG 1831
Query: 153 CGPASLSCATFLSRMGYDDITIYEK 177
GPA L+ A L++MG+ +T++E+
Sbjct: 1832 SGPAGLAAADQLNKMGH-FVTVFER 1855
>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain
168) GN=gltB PE=2 SV=2
Length = 493
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 30 LSERGALKEASRCLKCADAPCQ---------KSCPTQIDIKSFITSISHKNYYGAAKAIF 80
SE + ++ +RC+ C CQ CP I + + + A + +
Sbjct: 34 FSEEASKRQGARCMDCGTPFCQIGADINGFTSGCPIYNLIPEWNDLVYRGRWKEALERLL 93
Query: 81 SDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK 140
N G VCP C G C L A + ++I +++ + + G Q R P +
Sbjct: 94 KTNNFPEFTGRVCPAP--CEGSCTL-AISDPAVSIKNIERTIIDKGFENGWIQPRIPKKR 150
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
K+A++G GPA L+ A L++ G+ +T++E+
Sbjct: 151 TG---KKVAIVGSGPAGLASADQLNQAGH-SVTVFER 183
>sp|Q8XD75|YGFK_ECO57 Uncharacterized protein YgfK OS=Escherichia coli O157:H7 GN=ygfK
PE=4 SV=1
Length = 1032
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 26 KHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL 85
KH ER + E C APC +C + DI +I + Y A + I+ N L
Sbjct: 436 KHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEHRYADALELIYQRNAL 495
Query: 86 GLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEV-FKDMGISQIRPPDAKVDFP 144
G +C C C + +NI L++ A E + + +P + P
Sbjct: 496 PAITGHICDHQ--CQYNCTRLDYDSA-LNIRELKKVALEKGWDEYKQRWHKPAGSGSRHP 552
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK--NTYDMVTNVSPRI 190
+A+IG GPA L+ FL+R G+ +T++E+ N +V N+ P+
Sbjct: 553 ---VAVIGAGPAGLAAGYFLARAGH-PVTLFEREANAGGVVKNIIPQF 596
>sp|Q46811|YGFK_ECOLI Uncharacterized protein YgfK OS=Escherichia coli (strain K12)
GN=ygfK PE=4 SV=1
Length = 1032
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 26 KHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL 85
KH ER + E C APC +C + DI +I + Y A + I+ N L
Sbjct: 436 KHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEHRYADALELIYQRNAL 495
Query: 86 GLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEV-FKDMGISQIRPPDAKVDFP 144
G +C C C + +NI L++ A E + + +P + P
Sbjct: 496 PAITGHICDHQ--CQYNCTRLDYDSA-LNIRELKKVALEKGWDEYKQRWHKPAGSGSRHP 552
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK--NTYDMVTNVSPRI 190
+A+IG GPA L+ FL+R G+ +T++E+ N +V N+ P+
Sbjct: 553 ---VAVIGAGPAGLAAGYFLARAGH-PVTLFEREANAGGVVKNIIPQF 596
>sp|Q18KP1|RUBPS_HALWD Putative ribose 1,5-bisphosphate isomerase OS=Haloquadratum walsbyi
(strain DSM 16790) GN=HQ_1276A PE=3 SV=1
Length = 307
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 126 FKDMGISQIRPPDAK------VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
F D+ +Q+ AK +D DT++ ++G GP+ L A L+ G D+TI EKN
Sbjct: 6 FADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAERGV-DVTIVEKNN 64
Query: 180 Y 180
Y
Sbjct: 65 Y 65
>sp|P25017|TR2M2_AGRVI Tryptophan 2-monooxygenase OS=Agrobacterium vitis GN=iaaM PE=3 SV=1
Length = 755
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
D P K+A+IG G + L A+ L G DD+TIYE
Sbjct: 233 DVPRPKVAVIGAGISGLVVASELLHAGVDDVTIYE 267
>sp|P0A3V3|TR2M_RHIRD Tryptophan 2-monooxygenase OS=Rhizobium radiobacter GN=tms1 PE=3
SV=1
Length = 755
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
D P K+A+IG G + L A L G DD+TIYE
Sbjct: 233 DVPKPKVAVIGAGISGLVVANELLHAGVDDVTIYE 267
>sp|P0A3V2|TR2M_AGRT4 Tryptophan 2-monooxygenase OS=Agrobacterium tumefaciens (strain
Ach5) GN=tms1 PE=3 SV=1
Length = 755
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
D P K+A+IG G + L A L G DD+TIYE
Sbjct: 233 DVPKPKVAVIGAGISGLVVANELLHAGVDDVTIYE 267
>sp|Q12U93|RUBPS_METBU Ribose 1,5-bisphosphate isomerase OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2109 PE=3 SV=1
Length = 258
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-----TYDMVTNVSPRIVKGTT 195
+D+ D +AL+G GPA+L A +L+ G + IYEK + PRIV
Sbjct: 21 LDYTDVDVALVGGGPANLVAAKYLAEAGLKTV-IYEKKLAVGGGMWAGGMMFPRIVVQED 79
Query: 196 SRHL 199
+ H+
Sbjct: 80 ALHI 83
>sp|Q8TXF7|ACDA1_METKA Acetyl-CoA decarbonylase/synthase complex subunit alpha 1
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=cdhA1 PE=3 SV=1
Length = 760
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 31/130 (23%)
Query: 37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLT-CGMVCPT 95
KEA RCL C D C++ CP + I + ++ ++ G A D +G C CPT
Sbjct: 385 KEAKRCLGCGD--CERVCPNDLPIVEAMERAANGDFEGLADLF--DRCVGCARCESECPT 440
Query: 96 S----DLCMGGCNLYAAEE--------GPINIGGLQQFATEVFKDMGISQIRPPDAKVDF 143
++ L EE GPI KD+ I Q+ P D
Sbjct: 441 KLRVMNMIEDAWRLRTKEEKYKVRTGRGPI-------------KDVEIRQVGGPIVMGDI 487
Query: 144 PDTKIALIGC 153
P +A + C
Sbjct: 488 PGV-VAFVAC 496
>sp|Q04564|TR2M_AGRVS Tryptophan 2-monooxygenase OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=iaaM PE=3 SV=1
Length = 723
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE 203
K+A+IG G + L AT L R G DD+TI+E + +V G H + E
Sbjct: 209 KVAVIGAGISGLVSATLLLRNGIDDVTIFE----------AKNVVGGRAHTHFFKGE 255
>sp|A1RW13|RUBPS_PYRIL Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998
PE=3 SV=2
Length = 261
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-----TYDMVTNVSPRIV 191
++ D +A++G GPA L+ A +L+ G+ + +YE+ N+ P+IV
Sbjct: 19 EYSDVDVAIVGAGPAGLTAARYLAERGH-KVVVYERRFSFGGGIGPGGNMIPKIV 72
>sp|Q01911|TETX_BACFG Tetracycline resistance protein from transposon Tn4351/Tn4400
OS=Bacteroides fragilis GN=tetX PE=4 SV=1
Length = 388
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D +A+IG GP L+ A L + G D+++YE++ + RI GT H
Sbjct: 16 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERD-----NDREARIFGGTLDLH 63
>sp|P31020|PHEA_PSEUE Phenol 2-monooxygenase OS=Pseudomonas sp. (strain EST1001) GN=pheA
PE=3 SV=1
Length = 607
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 118 LQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
L+Q V D G+S P+ + + +T++ ++G GPA S A FLS G +I I
Sbjct: 9 LEQPGRSVIFDDGLSATDTPN-ETNVVETEVLIVGSGPAGSSAAMFLSTQGISNIMI 64
>sp|Q87KW0|DSBD_VIBPA Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=dsbD PE=3 SV=1
Length = 613
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 60 IKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC-PTSDLCMGGCNLYAAEEGPINIGGL 118
+++++ ++S+K G++ +F+ +G G+VC P + + G LY A+ G + GG+
Sbjct: 317 VQTWLNNLSNKQQGGSSAGVFA---MGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGI 373
Query: 119 QQFATEVFKDMGISQI 134
+A + MGI I
Sbjct: 374 ALYALAM--GMGIPLI 387
>sp|Q8ZZM5|RUBPS_PYRAE Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=PAE0175 PE=3 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-----TYDMVTNVSPRIV 191
++ D +A++G GPA L+ A +L+ G + +YE+ N+ P+IV
Sbjct: 19 EYSDVDVAIVGAGPAGLTAARYLAEKGL-KVVVYERRFSFGGGIGPGGNMLPKIV 72
>sp|O08340|GLTD_RHOSH Putative glutamate synthase [NADPH] small chain OS=Rhodobacter
sphaeroides GN=gltD PE=3 SV=1
Length = 413
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 89 CGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
CG +CP LC G C + + G + IG ++++ T+ + G
Sbjct: 33 CGRICPQDRLCEGNCVIEQSGHGTVTIGAVEKYITDTAWENG 74
>sp|A3MWF6|RUBPS_PYRCJ Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3
SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-----TYDMVTNVSPRIV 191
++ D +A++G GPA L+ A +L+ G+ + ++E+ N+ P+IV
Sbjct: 19 EYSDVDVAIVGAGPAGLTAARYLAERGF-KVLVFERRFSFGGGIGPGGNMIPKIV 72
>sp|Q21LK8|PDXB_SACD2 Erythronate-4-phosphate dehydrogenase OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=pdxB PE=3 SV=1
Length = 373
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 114 NIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD 170
N GG+ Q+A +G+ Q P D K+A++GCG LS +GYD
Sbjct: 91 NAGGVVQYALSAMAVLGLLQDSPSK------DFKVAVVGCGNVGSRVYRTLSALGYD 141
>sp|Q58053|Y636_METJA Uncharacterized protein MJ0636 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0636 PE=4 SV=1
Length = 397
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
KIA++G GPA + A FL++ G+ D+ ++EK+
Sbjct: 10 KIAVVGAGPAGRTSAMFLAKNGF-DVDLFEKD 40
>sp|Q0VZ69|THAL_CHOCO Tryptophan 2-halogenase OS=Chondromyces crocatus GN=cmdE PE=4 SV=1
Length = 522
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
TKI ++G GPA + AT L+R G+ ++T+ EK +
Sbjct: 7 TKILVVGGGPAGSTAATLLAREGF-EVTLVEKAIF 40
>sp|Q8DCZ0|DSBD_VIBVU Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus
(strain CMCP6) GN=dsbD PE=3 SV=1
Length = 593
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 60 IKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC-PTSDLCMGGCNLYAAEEGPINIGGL 118
+++++ ++S+K G++ +F+ +G G+VC P + + G LY A+ G + GG+
Sbjct: 295 VQTWLNNLSNKQQGGSSAGVFA---MGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGV 351
Query: 119 QQFATEVFKDMGISQI 134
+A + MGI I
Sbjct: 352 ALYALAM--GMGIPLI 365
>sp|Q8TM19|RUBPS_METAC Ribose 1,5-bisphosphate isomerase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_2851 PE=1 SV=1
Length = 260
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+D+ D +AL+G GPA+L A +L+ G + +YE+
Sbjct: 21 LDYTDIDVALVGGGPANLVAAKYLAEAGV-KVALYEQK 57
>sp|Q7MGV6|DSBD_VIBVY Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus
(strain YJ016) GN=dsbD PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 60 IKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC-PTSDLCMGGCNLYAAEEGPINIGGL 118
+++++ ++S+K G++ +F+ +G G+VC P + + G LY A+ G + GG+
Sbjct: 300 VQTWLNNLSNKQQGGSSTGVFA---MGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGV 356
Query: 119 QQFATEVFKDMGISQI 134
+A + MGI I
Sbjct: 357 ALYALAM--GMGIPLI 370
>sp|B1YDX0|RUBPS_PYRNV Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=Tneu_1052 PE=3 SV=1
Length = 259
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-----TYDMVTNVSPRIV 191
++ + +A++G GPA L+ A +L+ G+ + +YE+ N+ P+IV
Sbjct: 19 EYSEVDVAVVGAGPAGLTAARYLAERGH-RVVVYERRFSFGGGIGPGGNMIPKIV 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,839,344
Number of Sequences: 539616
Number of extensions: 3543481
Number of successful extensions: 8037
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 7957
Number of HSP's gapped (non-prelim): 84
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)