Query psy16201
Match_columns 240
No_of_seqs 241 out of 2833
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:23:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12831 putative oxidoreducta 100.0 5.9E-44 1.3E-48 339.1 19.5 207 15-228 16-238 (464)
2 TIGR01318 gltD_gamma_fam gluta 100.0 3.8E-43 8.3E-48 333.7 19.4 206 16-229 17-237 (467)
3 PRK12809 putative oxidoreducta 100.0 7.2E-43 1.6E-47 343.0 19.7 207 15-229 184-406 (639)
4 PRK12769 putative oxidoreducta 100.0 1E-42 2.3E-47 342.5 19.7 206 16-229 202-423 (654)
5 PRK12775 putative trifunctiona 100.0 4.1E-42 8.9E-47 351.3 19.2 206 16-229 308-528 (1006)
6 PRK12779 putative bifunctional 100.0 4.3E-42 9.3E-47 349.0 16.9 207 16-229 153-403 (944)
7 TIGR01316 gltA glutamate synth 100.0 2.9E-41 6.3E-46 319.2 18.7 206 16-228 3-228 (449)
8 PRK12810 gltD glutamate syntha 100.0 4.1E-40 9E-45 312.9 18.4 205 15-229 20-239 (471)
9 PRK12778 putative bifunctional 100.0 8.5E-40 1.8E-44 326.3 19.2 205 17-228 306-527 (752)
10 TIGR01317 GOGAT_sm_gam glutama 100.0 4E-39 8.6E-44 307.5 18.3 203 17-229 20-239 (485)
11 PRK11749 dihydropyrimidine deh 100.0 2.1E-38 4.4E-43 299.9 18.3 205 16-229 17-236 (457)
12 COG0493 GltD NADPH-dependent g 100.0 3.9E-37 8.4E-42 291.4 16.3 203 19-230 3-220 (457)
13 PRK09853 putative selenate red 100.0 8.5E-37 1.8E-41 309.0 15.7 199 20-229 421-634 (1019)
14 TIGR03315 Se_ygfK putative sel 100.0 5.3E-36 1.1E-40 304.0 16.9 189 32-229 429-632 (1012)
15 PRK12771 putative glutamate sy 100.0 2.4E-35 5.2E-40 285.8 18.3 212 3-229 4-233 (564)
16 PRK12814 putative NADPH-depend 100.0 3.1E-34 6.8E-39 282.5 19.1 181 39-229 94-289 (652)
17 PRK06567 putative bifunctional 100.0 6.8E-34 1.5E-38 285.7 17.7 203 18-229 207-508 (1028)
18 KOG0399|consensus 100.0 1E-33 2.2E-38 280.7 14.6 203 17-229 1662-1881(2142)
19 PRK13984 putative oxidoreducta 100.0 2E-32 4.3E-37 267.2 18.1 201 17-228 163-378 (604)
20 PF14691 Fer4_20: Dihydroprymi 100.0 7.5E-34 1.6E-38 221.7 4.1 110 19-131 2-111 (111)
21 PLN02852 ferredoxin-NADP+ redu 99.2 7.3E-11 1.6E-15 113.5 9.0 85 142-229 23-125 (491)
22 PTZ00188 adrenodoxin reductase 99.2 8.7E-11 1.9E-15 112.5 9.1 84 143-229 37-137 (506)
23 KOG1800|consensus 99.1 2.6E-10 5.7E-15 105.1 7.9 86 145-233 20-124 (468)
24 PF13450 NAD_binding_8: NAD(P) 98.4 4.4E-07 9.4E-12 64.6 4.6 32 150-182 1-32 (68)
25 COG1635 THI4 Ribulose 1,5-bisp 98.4 7.1E-07 1.5E-11 77.6 5.9 36 144-180 29-64 (262)
26 PLN02172 flavin-containing mon 98.3 8.7E-07 1.9E-11 84.8 5.6 46 142-188 7-53 (461)
27 PLN02487 zeta-carotene desatur 98.3 1.4E-06 3E-11 85.5 6.8 60 117-181 47-110 (569)
28 PF00070 Pyr_redox: Pyridine n 98.3 1.8E-06 4E-11 62.7 5.7 57 147-204 1-63 (80)
29 PRK12770 putative glutamate sy 98.2 7.6E-06 1.6E-10 75.1 9.8 83 143-228 16-128 (352)
30 PF01946 Thi4: Thi4 family; PD 98.2 2.1E-06 4.6E-11 74.5 5.5 35 145-180 17-51 (230)
31 PRK11883 protoporphyrinogen ox 98.2 2.1E-06 4.6E-11 80.3 5.2 36 146-182 1-38 (451)
32 COG3349 Uncharacterized conser 98.1 2.1E-06 4.5E-11 82.2 4.7 36 146-182 1-36 (485)
33 COG1233 Phytoene dehydrogenase 98.1 2.4E-06 5.1E-11 82.2 5.0 38 145-183 3-40 (487)
34 KOG0029|consensus 98.1 3E-06 6.6E-11 81.9 5.5 40 142-182 12-51 (501)
35 KOG1399|consensus 98.1 2.9E-06 6.4E-11 80.9 4.8 43 144-187 5-48 (448)
36 PF00743 FMO-like: Flavin-bind 98.1 4E-06 8.7E-11 81.7 5.2 39 146-185 2-41 (531)
37 PRK07233 hypothetical protein; 98.1 4.2E-06 9.1E-11 77.7 5.0 35 147-182 1-35 (434)
38 PF01494 FAD_binding_3: FAD bi 98.1 4E-06 8.8E-11 74.7 4.7 34 146-180 2-35 (356)
39 PRK07364 2-octaprenyl-6-methox 98.0 7.2E-06 1.6E-10 76.2 5.5 37 143-180 16-52 (415)
40 PLN02576 protoporphyrinogen ox 98.0 7.8E-06 1.7E-10 78.0 5.6 39 143-182 10-49 (496)
41 PRK08163 salicylate hydroxylas 98.0 1.2E-05 2.7E-10 74.2 6.2 35 145-180 4-38 (396)
42 COG0644 FixC Dehydrogenases (f 98.0 9.5E-06 2.1E-10 75.8 5.3 37 145-182 3-39 (396)
43 TIGR02733 desat_CrtD C-3',4' d 98.0 1.2E-05 2.6E-10 76.9 6.0 36 146-182 2-37 (492)
44 PLN02268 probable polyamine ox 98.0 9.3E-06 2E-10 76.2 5.1 36 146-182 1-36 (435)
45 PRK07045 putative monooxygenas 98.0 1.3E-05 2.9E-10 74.0 5.9 35 145-180 5-39 (388)
46 TIGR00562 proto_IX_ox protopor 97.9 9.7E-06 2.1E-10 76.4 5.0 36 146-182 3-42 (462)
47 PRK06847 hypothetical protein; 97.9 1.2E-05 2.6E-10 73.6 5.3 35 145-180 4-38 (375)
48 PRK07208 hypothetical protein; 97.9 1.3E-05 2.7E-10 76.3 5.6 38 144-182 3-40 (479)
49 PRK06753 hypothetical protein; 97.9 1.1E-05 2.4E-10 73.8 4.9 34 146-180 1-34 (373)
50 PRK07236 hypothetical protein; 97.9 1.3E-05 2.8E-10 74.1 5.2 34 145-179 6-39 (386)
51 PRK06475 salicylate hydroxylas 97.9 1.3E-05 2.8E-10 74.6 5.0 35 145-180 2-36 (400)
52 TIGR02734 crtI_fam phytoene de 97.9 1.3E-05 2.9E-10 76.7 5.0 34 148-182 1-34 (502)
53 TIGR00292 thiazole biosynthesi 97.9 2.4E-05 5.1E-10 69.4 6.2 35 145-180 21-55 (254)
54 TIGR01988 Ubi-OHases Ubiquinon 97.9 1.2E-05 2.6E-10 73.4 4.4 33 147-180 1-33 (385)
55 PRK04176 ribulose-1,5-biphosph 97.9 2.6E-05 5.6E-10 69.2 6.1 35 145-180 25-59 (257)
56 COG1232 HemY Protoporphyrinoge 97.9 1.6E-05 3.4E-10 75.8 5.0 36 146-182 1-38 (444)
57 TIGR02023 BchP-ChlP geranylger 97.9 2.4E-05 5.2E-10 72.6 6.1 32 146-178 1-32 (388)
58 PF01266 DAO: FAD dependent ox 97.9 2E-05 4.2E-10 70.4 5.2 32 147-179 1-32 (358)
59 PRK12416 protoporphyrinogen ox 97.9 1.7E-05 3.6E-10 75.2 4.9 36 146-182 2-43 (463)
60 PRK13977 myosin-cross-reactive 97.9 2.7E-05 5.9E-10 76.2 6.4 39 143-182 20-62 (576)
61 TIGR01292 TRX_reduct thioredox 97.9 2E-05 4.4E-10 69.2 5.1 35 146-181 1-35 (300)
62 PRK05714 2-octaprenyl-3-methyl 97.9 1.7E-05 3.7E-10 73.7 4.8 33 146-179 3-35 (405)
63 PF03486 HI0933_like: HI0933-l 97.8 1.6E-05 3.6E-10 75.1 4.6 36 146-182 1-36 (409)
64 PF13738 Pyr_redox_3: Pyridine 97.8 1.8E-05 3.9E-10 66.0 4.3 37 149-186 1-39 (203)
65 PRK07588 hypothetical protein; 97.8 1.9E-05 4.2E-10 73.0 4.9 34 146-180 1-34 (391)
66 PRK09126 hypothetical protein; 97.8 1.9E-05 4.1E-10 72.8 4.7 35 145-180 3-37 (392)
67 KOG1276|consensus 97.8 2.4E-05 5.2E-10 73.7 5.3 77 143-220 9-90 (491)
68 TIGR02032 GG-red-SF geranylger 97.8 2.3E-05 4.9E-10 68.5 5.0 33 147-180 2-34 (295)
69 TIGR02731 phytoene_desat phyto 97.8 2.1E-05 4.6E-10 74.2 4.9 34 147-181 1-34 (453)
70 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 2.3E-05 5.1E-10 72.9 5.0 35 145-180 2-36 (390)
71 PRK10157 putative oxidoreducta 97.8 2.6E-05 5.7E-10 73.7 5.4 37 145-182 5-41 (428)
72 PRK10015 oxidoreductase; Provi 97.8 2.8E-05 6E-10 73.6 5.3 37 145-182 5-41 (429)
73 PRK06184 hypothetical protein; 97.8 3.2E-05 7E-10 74.3 5.8 35 145-180 3-37 (502)
74 TIGR03219 salicylate_mono sali 97.8 3.6E-05 7.8E-10 71.9 6.0 34 146-180 1-35 (414)
75 TIGR01984 UbiH 2-polyprenyl-6- 97.8 2.2E-05 4.8E-10 72.0 4.3 33 147-180 1-34 (382)
76 PRK05868 hypothetical protein; 97.8 2.6E-05 5.7E-10 72.2 4.9 34 146-180 2-35 (372)
77 PRK07538 hypothetical protein; 97.8 2.6E-05 5.7E-10 72.8 4.9 34 146-180 1-34 (413)
78 PRK08773 2-octaprenyl-3-methyl 97.8 2.7E-05 5.8E-10 72.1 4.8 36 144-180 5-40 (392)
79 PRK08244 hypothetical protein; 97.8 3.4E-05 7.4E-10 73.9 5.6 34 146-180 3-36 (493)
80 PRK07608 ubiquinone biosynthes 97.8 3E-05 6.5E-10 71.3 4.9 35 145-180 5-39 (388)
81 PRK08849 2-octaprenyl-3-methyl 97.8 2.9E-05 6.3E-10 71.9 4.7 33 146-179 4-36 (384)
82 PRK08013 oxidoreductase; Provi 97.8 3E-05 6.4E-10 72.3 4.7 35 145-180 3-37 (400)
83 PLN00093 geranylgeranyl diphos 97.8 3.9E-05 8.4E-10 73.3 5.6 36 143-179 37-72 (450)
84 PRK10262 thioredoxin reductase 97.8 3.5E-05 7.5E-10 69.6 5.0 37 144-181 5-41 (321)
85 PRK08243 4-hydroxybenzoate 3-m 97.7 3.4E-05 7.3E-10 71.6 5.0 35 145-180 2-36 (392)
86 COG0665 DadA Glycine/D-amino a 97.7 4E-05 8.7E-10 70.1 5.3 37 144-181 3-39 (387)
87 PRK07494 2-octaprenyl-6-methox 97.7 3.7E-05 8E-10 70.9 4.8 35 145-180 7-41 (388)
88 TIGR03143 AhpF_homolog putativ 97.7 4.7E-05 1E-09 74.4 5.6 37 145-182 4-40 (555)
89 COG0654 UbiH 2-polyprenyl-6-me 97.7 3.9E-05 8.5E-10 71.3 4.7 33 145-178 2-34 (387)
90 TIGR02028 ChlP geranylgeranyl 97.7 4.1E-05 8.8E-10 71.7 4.7 32 147-179 2-33 (398)
91 PRK05732 2-octaprenyl-6-methox 97.7 3.9E-05 8.5E-10 70.6 4.5 33 145-178 3-38 (395)
92 PRK06126 hypothetical protein; 97.7 5E-05 1.1E-09 73.6 5.3 36 144-180 6-41 (545)
93 PRK01438 murD UDP-N-acetylmura 97.7 0.00011 2.3E-09 70.3 7.4 73 143-226 14-86 (480)
94 PRK08132 FAD-dependent oxidore 97.7 7E-05 1.5E-09 72.7 6.2 36 144-180 22-57 (547)
95 COG2081 Predicted flavoprotein 97.7 5.2E-05 1.1E-09 70.9 5.0 36 145-181 3-38 (408)
96 COG2072 TrkA Predicted flavopr 97.7 5.8E-05 1.3E-09 71.9 5.5 43 143-186 6-50 (443)
97 TIGR01377 soxA_mon sarcosine o 97.7 5.1E-05 1.1E-09 69.5 4.9 33 147-180 2-34 (380)
98 TIGR02730 carot_isom carotene 97.7 5E-05 1.1E-09 72.9 5.0 35 147-182 2-36 (493)
99 PRK12409 D-amino acid dehydrog 97.7 5.2E-05 1.1E-09 70.6 4.9 33 146-179 2-34 (410)
100 PF07992 Pyr_redox_2: Pyridine 97.7 6E-05 1.3E-09 62.6 4.8 32 147-179 1-32 (201)
101 PRK08020 ubiF 2-octaprenyl-3-m 97.7 4.5E-05 9.8E-10 70.3 4.4 34 145-179 5-38 (391)
102 PRK02705 murD UDP-N-acetylmura 97.7 0.00015 3.2E-09 68.8 7.8 75 147-226 2-76 (459)
103 TIGR01421 gluta_reduc_1 glutat 97.6 5.8E-05 1.3E-09 71.8 5.0 37 145-182 2-38 (450)
104 PRK06185 hypothetical protein; 97.6 6.1E-05 1.3E-09 69.9 5.0 35 144-179 5-39 (407)
105 PRK06617 2-octaprenyl-6-methox 97.6 5E-05 1.1E-09 70.1 4.4 32 146-178 2-33 (374)
106 PRK06370 mercuric reductase; V 97.6 6.6E-05 1.4E-09 71.4 5.3 37 145-182 5-41 (463)
107 PRK14694 putative mercuric red 97.6 7E-05 1.5E-09 71.4 5.4 39 143-182 4-42 (468)
108 PRK06116 glutathione reductase 97.6 6.3E-05 1.4E-09 71.2 5.0 37 145-182 4-40 (450)
109 PRK06416 dihydrolipoamide dehy 97.6 6.9E-05 1.5E-09 71.1 5.2 38 144-182 3-40 (462)
110 COG3380 Predicted NAD/FAD-depe 97.6 6.4E-05 1.4E-09 67.4 4.5 33 147-180 3-35 (331)
111 PLN02612 phytoene desaturase 97.6 8.1E-05 1.8E-09 73.0 5.7 38 142-180 90-127 (567)
112 PLN02927 antheraxanthin epoxid 97.6 6.5E-05 1.4E-09 75.0 5.0 36 143-179 79-114 (668)
113 PRK11259 solA N-methyltryptoph 97.6 7.3E-05 1.6E-09 68.3 5.0 35 145-180 3-37 (376)
114 PRK08850 2-octaprenyl-6-methox 97.6 6.1E-05 1.3E-09 70.1 4.5 33 145-178 4-36 (405)
115 TIGR01424 gluta_reduc_2 glutat 97.6 7.2E-05 1.6E-09 70.9 5.0 37 145-182 2-38 (446)
116 PRK06183 mhpA 3-(3-hydroxyphen 97.6 9.6E-05 2.1E-09 71.7 5.9 37 143-180 8-44 (538)
117 TIGR02732 zeta_caro_desat caro 97.6 7.3E-05 1.6E-09 71.7 4.9 34 147-181 1-34 (474)
118 PRK05976 dihydrolipoamide dehy 97.6 9E-05 1.9E-09 70.7 5.4 38 144-182 3-40 (472)
119 PLN02529 lysine-specific histo 97.6 9.2E-05 2E-09 74.7 5.6 39 143-182 158-196 (738)
120 TIGR03364 HpnW_proposed FAD de 97.6 9E-05 1.9E-09 67.7 5.0 33 147-180 2-34 (365)
121 PRK07333 2-octaprenyl-6-methox 97.6 6.9E-05 1.5E-09 69.2 4.3 34 146-180 2-37 (403)
122 TIGR02053 MerA mercuric reduct 97.6 8.8E-05 1.9E-09 70.5 5.1 37 146-183 1-37 (463)
123 PLN02568 polyamine oxidase 97.6 0.0001 2.2E-09 72.0 5.5 37 145-182 5-46 (539)
124 PRK05249 soluble pyridine nucl 97.5 0.00011 2.3E-09 69.7 5.1 37 145-182 5-42 (461)
125 TIGR01790 carotene-cycl lycope 97.5 9.3E-05 2E-09 68.2 4.4 33 147-180 1-33 (388)
126 PLN02463 lycopene beta cyclase 97.5 0.00012 2.6E-09 70.0 5.2 36 143-179 26-61 (447)
127 PRK06834 hypothetical protein; 97.5 0.00012 2.5E-09 70.6 5.1 35 145-180 3-37 (488)
128 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00011 2.3E-09 69.9 4.8 34 146-180 3-36 (436)
129 PRK07251 pyridine nucleotide-d 97.5 0.00011 2.4E-09 69.3 4.9 34 145-179 3-36 (438)
130 PLN02328 lysine-specific histo 97.5 0.00013 2.8E-09 74.2 5.5 39 143-182 236-274 (808)
131 PRK01747 mnmC bifunctional tRN 97.5 0.00013 2.9E-09 72.6 5.5 34 145-179 260-293 (662)
132 PRK07190 hypothetical protein; 97.5 0.00014 3.1E-09 70.0 5.4 35 145-180 5-39 (487)
133 PRK08010 pyridine nucleotide-d 97.5 0.00013 2.8E-09 68.9 5.0 34 145-179 3-36 (441)
134 TIGR03140 AhpF alkyl hydropero 97.5 0.0002 4.2E-09 69.4 6.3 34 143-177 210-243 (515)
135 PRK11445 putative oxidoreducta 97.5 0.00012 2.5E-09 67.2 4.5 32 146-179 2-33 (351)
136 COG1148 HdrA Heterodisulfide r 97.5 0.00013 2.9E-09 69.9 4.9 39 143-182 122-160 (622)
137 TIGR01350 lipoamide_DH dihydro 97.5 0.00013 2.9E-09 69.0 5.0 36 146-182 2-37 (461)
138 PRK06292 dihydrolipoamide dehy 97.5 0.00014 3E-09 68.9 5.1 39 145-184 3-41 (460)
139 PRK11728 hydroxyglutarate oxid 97.5 0.00013 2.9E-09 67.7 4.8 33 146-179 3-37 (393)
140 TIGR00031 UDP-GALP_mutase UDP- 97.5 0.00014 3E-09 68.1 4.9 36 146-182 2-37 (377)
141 PRK07818 dihydrolipoamide dehy 97.5 0.00014 3.1E-09 69.2 5.0 37 145-182 4-40 (466)
142 PRK15317 alkyl hydroperoxide r 97.5 0.00023 5.1E-09 68.8 6.5 35 143-178 209-243 (517)
143 TIGR01989 COQ6 Ubiquinone bios 97.5 0.00012 2.7E-09 69.1 4.5 32 147-179 2-37 (437)
144 PRK08294 phenol 2-monooxygenas 97.5 0.00017 3.7E-09 71.7 5.6 36 144-180 31-67 (634)
145 KOG0685|consensus 97.5 0.00018 3.9E-09 68.6 5.3 40 143-182 19-58 (498)
146 PRK00711 D-amino acid dehydrog 97.5 0.00015 3.3E-09 67.3 4.9 32 147-179 2-33 (416)
147 PLN02985 squalene monooxygenas 97.4 0.00018 3.9E-09 69.9 5.3 36 143-179 41-76 (514)
148 PRK13748 putative mercuric red 97.4 0.00017 3.7E-09 70.1 5.1 38 144-182 97-134 (561)
149 COG1231 Monoamine oxidase [Ami 97.4 0.0002 4.2E-09 68.0 5.3 39 143-182 5-43 (450)
150 TIGR03329 Phn_aa_oxid putative 97.4 0.00026 5.6E-09 67.4 6.0 36 144-180 23-60 (460)
151 KOG2614|consensus 97.4 0.00018 3.9E-09 67.5 4.7 34 145-179 2-35 (420)
152 COG0492 TrxB Thioredoxin reduc 97.4 0.00021 4.6E-09 65.1 5.0 36 145-181 3-39 (305)
153 PF12831 FAD_oxidored: FAD dep 97.4 0.00021 4.5E-09 67.7 4.9 34 147-181 1-34 (428)
154 PRK06115 dihydrolipoamide dehy 97.4 0.0002 4.3E-09 68.4 4.9 37 145-182 3-40 (466)
155 PTZ00367 squalene epoxidase; P 97.4 0.00021 4.6E-09 70.2 4.8 36 143-179 31-66 (567)
156 COG2907 Predicted NAD/FAD-bind 97.4 0.00018 3.8E-09 66.6 3.9 35 144-180 7-41 (447)
157 PRK06912 acoL dihydrolipoamide 97.3 0.00024 5.3E-09 67.6 5.0 35 147-182 2-36 (458)
158 TIGR01373 soxB sarcosine oxida 97.3 0.0003 6.6E-09 65.4 5.5 37 143-179 28-65 (407)
159 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00025 5.4E-09 67.5 4.7 33 147-180 2-34 (433)
160 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00023 5E-09 72.2 4.8 34 146-180 1-36 (765)
161 PLN02676 polyamine oxidase 97.3 0.00033 7.1E-09 67.6 5.3 39 143-181 24-62 (487)
162 PRK08274 tricarballylate dehyd 97.3 0.00033 7.1E-09 66.6 5.1 34 145-179 4-37 (466)
163 PRK06467 dihydrolipoamide dehy 97.3 0.00037 7.9E-09 66.7 5.5 37 145-182 4-41 (471)
164 PRK14106 murD UDP-N-acetylmura 97.3 0.00081 1.8E-08 63.5 7.7 74 144-227 4-77 (450)
165 PF00890 FAD_binding_2: FAD bi 97.3 0.00032 7E-09 65.3 4.8 33 147-180 1-33 (417)
166 PRK01710 murD UDP-N-acetylmura 97.3 0.00099 2.1E-08 63.5 8.1 73 144-226 13-85 (458)
167 PRK13369 glycerol-3-phosphate 97.3 0.00042 9E-09 66.9 5.6 36 144-180 5-40 (502)
168 PRK09564 coenzyme A disulfide 97.3 0.00069 1.5E-08 63.8 6.8 34 146-180 1-36 (444)
169 PLN03000 amine oxidase 97.2 0.00055 1.2E-08 70.1 6.5 39 143-182 182-220 (881)
170 TIGR01372 soxA sarcosine oxida 97.2 0.00036 7.9E-09 72.7 5.1 35 145-180 163-197 (985)
171 PRK11101 glpA sn-glycerol-3-ph 97.2 0.00044 9.6E-09 67.5 5.3 35 145-180 6-40 (546)
172 PRK12266 glpD glycerol-3-phosp 97.2 0.00047 1E-08 66.7 5.4 36 144-180 5-40 (508)
173 TIGR01813 flavo_cyto_c flavocy 97.2 0.00041 9E-09 65.3 4.9 33 147-180 1-34 (439)
174 PRK07121 hypothetical protein; 97.2 0.00073 1.6E-08 64.9 6.6 36 144-180 19-54 (492)
175 PLN02697 lycopene epsilon cycl 97.2 0.00053 1.2E-08 66.9 5.4 33 145-178 108-140 (529)
176 PLN02661 Putative thiazole syn 97.2 0.00045 9.8E-09 64.2 4.7 36 144-180 91-127 (357)
177 PRK06996 hypothetical protein; 97.2 0.00046 1E-08 64.2 4.5 36 143-179 9-48 (398)
178 PRK09754 phenylpropionate diox 97.1 0.00084 1.8E-08 62.6 6.1 60 144-204 143-209 (396)
179 PF05834 Lycopene_cycl: Lycope 97.1 0.00041 8.8E-09 64.4 4.0 33 147-180 1-35 (374)
180 COG1152 CdhA CO dehydrogenase/ 97.1 0.00081 1.8E-08 65.5 6.0 80 27-124 387-466 (772)
181 PRK06481 fumarate reductase fl 97.1 0.00066 1.4E-08 65.6 5.4 36 144-180 60-95 (506)
182 TIGR00275 flavoprotein, HI0933 97.1 0.00034 7.5E-09 65.6 3.4 31 149-180 1-31 (400)
183 PRK07845 flavoprotein disulfid 97.1 0.00059 1.3E-08 65.2 5.0 36 146-182 2-37 (466)
184 PTZ00058 glutathione reductase 97.1 0.00064 1.4E-08 66.8 5.3 38 144-182 47-84 (561)
185 COG0446 HcaD Uncharacterized N 97.1 0.00076 1.6E-08 61.6 5.4 59 145-204 136-201 (415)
186 TIGR01320 mal_quin_oxido malat 97.1 0.00055 1.2E-08 66.0 4.6 32 147-179 2-35 (483)
187 PRK14727 putative mercuric red 97.1 0.0007 1.5E-08 64.9 5.2 39 143-182 14-53 (479)
188 PRK06327 dihydrolipoamide dehy 97.1 0.00078 1.7E-08 64.5 5.3 32 145-177 4-35 (475)
189 PRK04965 NADH:flavorubredoxin 97.1 0.0012 2.5E-08 61.1 6.2 82 146-229 3-110 (377)
190 TIGR01789 lycopene_cycl lycope 97.0 0.00068 1.5E-08 63.0 4.5 32 147-179 1-34 (370)
191 PRK07251 pyridine nucleotide-d 97.0 0.0012 2.7E-08 62.2 6.0 59 145-204 157-221 (438)
192 PRK12842 putative succinate de 97.0 0.00087 1.9E-08 65.8 5.1 35 145-180 9-43 (574)
193 PRK08401 L-aspartate oxidase; 97.0 0.00082 1.8E-08 64.3 4.8 34 146-180 2-35 (466)
194 PRK05976 dihydrolipoamide dehy 97.0 0.0012 2.7E-08 62.9 6.0 59 145-204 180-244 (472)
195 COG0771 MurD UDP-N-acetylmuram 97.0 0.0016 3.5E-08 62.2 6.7 71 145-226 7-77 (448)
196 PRK09754 phenylpropionate diox 97.0 0.00092 2E-08 62.3 4.9 85 145-230 3-112 (396)
197 PRK05257 malate:quinone oxidor 97.0 0.00096 2.1E-08 64.6 5.0 36 144-180 4-41 (494)
198 PLN02507 glutathione reductase 97.0 0.0011 2.4E-08 64.1 5.3 34 143-177 23-56 (499)
199 PLN02464 glycerol-3-phosphate 97.0 0.001 2.2E-08 66.2 5.2 35 145-180 71-105 (627)
200 TIGR01470 cysG_Nterm siroheme 97.0 0.0036 7.9E-08 53.8 8.0 74 143-229 7-80 (205)
201 COG1249 Lpd Pyruvate/2-oxoglut 97.0 0.0014 3.1E-08 62.8 6.0 61 144-205 172-238 (454)
202 TIGR03169 Nterm_to_SelD pyridi 97.0 0.00093 2E-08 61.2 4.6 33 147-180 1-36 (364)
203 COG0562 Glf UDP-galactopyranos 96.9 0.0014 3E-08 60.1 5.5 35 146-181 2-36 (374)
204 PTZ00052 thioredoxin reductase 96.9 0.0009 2E-08 64.6 4.5 32 145-177 5-36 (499)
205 PRK06115 dihydrolipoamide dehy 96.9 0.0019 4.1E-08 61.7 6.5 60 144-204 173-238 (466)
206 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.0011 2.3E-08 64.9 4.8 33 147-180 1-33 (566)
207 PRK04965 NADH:flavorubredoxin 96.9 0.0019 4.1E-08 59.7 6.2 60 144-204 140-206 (377)
208 PRK12837 3-ketosteroid-delta-1 96.9 0.0012 2.7E-08 63.8 5.1 34 145-180 7-40 (513)
209 PRK05192 tRNA uridine 5-carbox 96.9 0.0012 2.5E-08 65.5 4.9 33 145-178 4-36 (618)
210 PRK07818 dihydrolipoamide dehy 96.9 0.0019 4E-08 61.6 6.1 59 145-204 172-236 (466)
211 PRK06370 mercuric reductase; V 96.9 0.002 4.3E-08 61.3 6.1 59 145-204 171-235 (463)
212 TIGR01350 lipoamide_DH dihydro 96.9 0.002 4.3E-08 61.0 6.1 59 145-204 170-234 (461)
213 PRK06416 dihydrolipoamide dehy 96.9 0.002 4.4E-08 61.1 6.1 59 145-204 172-236 (462)
214 TIGR02053 MerA mercuric reduct 96.9 0.0018 3.9E-08 61.5 5.8 59 145-204 166-230 (463)
215 PRK13512 coenzyme A disulfide 96.9 0.002 4.3E-08 61.1 5.9 59 145-204 148-212 (438)
216 TIGR01421 gluta_reduc_1 glutat 96.9 0.002 4.4E-08 61.3 6.0 58 145-203 166-229 (450)
217 PRK09897 hypothetical protein; 96.8 0.0015 3.3E-08 63.8 5.2 34 146-180 2-37 (534)
218 PRK06912 acoL dihydrolipoamide 96.8 0.0024 5.1E-08 60.8 6.1 59 145-204 170-234 (458)
219 PRK08641 sdhA succinate dehydr 96.8 0.0017 3.7E-08 64.1 5.1 34 146-180 4-37 (589)
220 PRK05249 soluble pyridine nucl 96.8 0.0026 5.5E-08 60.3 6.1 60 144-204 174-239 (461)
221 PRK03369 murD UDP-N-acetylmura 96.8 0.0043 9.2E-08 59.9 7.7 69 143-226 10-78 (488)
222 PLN02546 glutathione reductase 96.8 0.002 4.3E-08 63.3 5.4 33 144-177 78-110 (558)
223 PRK07803 sdhA succinate dehydr 96.8 0.0017 3.7E-08 64.6 5.0 35 145-180 8-42 (626)
224 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.0026 5.7E-08 59.7 6.0 59 145-204 137-202 (427)
225 PRK04308 murD UDP-N-acetylmura 96.8 0.0071 1.5E-07 57.3 8.9 69 145-226 5-75 (445)
226 PRK07804 L-aspartate oxidase; 96.8 0.0017 3.7E-08 63.4 4.8 35 145-180 16-50 (541)
227 TIGR01316 gltA glutamate synth 96.7 0.0041 9E-08 59.2 7.2 58 144-202 271-330 (449)
228 PRK02472 murD UDP-N-acetylmura 96.7 0.0062 1.3E-07 57.5 8.4 73 144-226 4-76 (447)
229 PLN02976 amine oxidase 96.7 0.002 4.4E-08 69.0 5.5 38 143-181 691-728 (1713)
230 PRK12834 putative FAD-binding 96.7 0.0018 4E-08 63.2 4.8 34 145-179 4-37 (549)
231 TIGR02462 pyranose_ox pyranose 96.7 0.0019 4.1E-08 63.3 4.8 33 147-180 2-34 (544)
232 PRK12839 hypothetical protein; 96.7 0.0024 5.3E-08 62.8 5.6 37 143-180 6-42 (572)
233 PRK13339 malate:quinone oxidor 96.7 0.0023 4.9E-08 62.1 5.2 36 143-179 4-41 (497)
234 TIGR03140 AhpF alkyl hydropero 96.7 0.0032 7E-08 61.0 6.3 60 144-204 351-411 (515)
235 PRK07843 3-ketosteroid-delta-1 96.7 0.0021 4.5E-08 63.0 5.0 35 145-180 7-41 (557)
236 TIGR01292 TRX_reduct thioredox 96.7 0.0038 8.2E-08 54.8 6.2 59 144-203 140-199 (300)
237 PRK04690 murD UDP-N-acetylmura 96.7 0.005 1.1E-07 59.1 7.5 71 144-226 7-77 (468)
238 PRK12835 3-ketosteroid-delta-1 96.7 0.0022 4.7E-08 63.3 5.1 35 145-180 11-45 (584)
239 PRK00141 murD UDP-N-acetylmura 96.7 0.0059 1.3E-07 58.6 7.9 70 143-226 13-82 (473)
240 PRK06327 dihydrolipoamide dehy 96.7 0.0033 7.1E-08 60.2 6.1 59 145-204 183-247 (475)
241 PTZ00383 malate:quinone oxidor 96.7 0.0022 4.7E-08 62.2 4.8 35 144-179 44-80 (497)
242 PRK13512 coenzyme A disulfide 96.7 0.0023 4.9E-08 60.6 4.8 34 146-180 2-37 (438)
243 PRK07057 sdhA succinate dehydr 96.7 0.0022 4.9E-08 63.2 4.9 35 144-179 11-45 (591)
244 PRK07573 sdhA succinate dehydr 96.6 0.003 6.5E-08 63.0 5.5 35 144-179 34-68 (640)
245 PRK12844 3-ketosteroid-delta-1 96.6 0.0029 6.2E-08 62.0 5.3 35 145-180 6-40 (557)
246 PRK06452 sdhA succinate dehydr 96.6 0.0025 5.4E-08 62.6 4.9 34 145-179 5-38 (566)
247 PF13454 NAD_binding_9: FAD-NA 96.6 0.0022 4.7E-08 52.3 3.7 32 149-181 1-37 (156)
248 PF04820 Trp_halogenase: Trypt 96.6 0.0024 5.2E-08 61.1 4.5 33 147-180 1-36 (454)
249 PRK06116 glutathione reductase 96.6 0.0041 8.8E-08 58.9 6.0 59 145-204 167-231 (450)
250 PLN02507 glutathione reductase 96.6 0.0041 8.9E-08 60.1 6.0 59 145-204 203-267 (499)
251 PRK09564 coenzyme A disulfide 96.6 0.0045 9.9E-08 58.2 6.2 60 144-204 148-214 (444)
252 TIGR02374 nitri_red_nirB nitri 96.6 0.0038 8.2E-08 63.7 6.0 60 144-204 139-205 (785)
253 PRK06069 sdhA succinate dehydr 96.6 0.0027 5.8E-08 62.4 4.8 35 145-180 5-42 (577)
254 PRK06854 adenylylsulfate reduc 96.6 0.0026 5.5E-08 63.1 4.6 35 145-180 11-47 (608)
255 PTZ00139 Succinate dehydrogena 96.6 0.0029 6.2E-08 62.9 4.9 35 145-180 29-63 (617)
256 PRK07845 flavoprotein disulfid 96.6 0.0043 9.4E-08 59.2 6.0 58 145-203 177-240 (466)
257 TIGR01423 trypano_reduc trypan 96.5 0.0033 7.1E-08 60.7 5.1 34 144-178 2-36 (486)
258 TIGR01811 sdhA_Bsu succinate d 96.5 0.0023 5.1E-08 63.3 4.1 31 148-179 1-31 (603)
259 PRK08958 sdhA succinate dehydr 96.5 0.0037 8E-08 61.7 5.5 34 145-179 7-40 (588)
260 PRK09078 sdhA succinate dehydr 96.5 0.003 6.5E-08 62.4 4.9 34 145-179 12-45 (598)
261 PRK08010 pyridine nucleotide-d 96.5 0.0053 1.1E-07 58.0 6.3 60 144-204 157-222 (441)
262 PLN00128 Succinate dehydrogena 96.5 0.0031 6.8E-08 62.8 4.9 35 145-180 50-84 (635)
263 PRK06134 putative FAD-binding 96.5 0.004 8.7E-08 61.3 5.6 37 143-180 10-46 (581)
264 PRK12831 putative oxidoreducta 96.5 0.007 1.5E-07 58.0 7.1 58 144-202 280-339 (464)
265 PRK14989 nitrite reductase sub 96.5 0.004 8.8E-08 64.0 5.8 60 144-204 144-210 (847)
266 PRK15317 alkyl hydroperoxide r 96.5 0.0053 1.1E-07 59.5 6.3 59 144-203 350-409 (517)
267 PTZ00318 NADH dehydrogenase-li 96.5 0.0034 7.4E-08 59.2 4.8 38 142-180 7-44 (424)
268 TIGR01424 gluta_reduc_2 glutat 96.5 0.0052 1.1E-07 58.3 6.1 59 144-203 165-229 (446)
269 PF01134 GIDA: Glucose inhibit 96.5 0.0032 6.8E-08 59.4 4.5 28 147-175 1-28 (392)
270 PTZ00058 glutathione reductase 96.5 0.0049 1.1E-07 60.6 6.0 59 145-204 237-301 (561)
271 PRK05945 sdhA succinate dehydr 96.5 0.0034 7.3E-08 61.7 4.8 34 146-180 4-39 (575)
272 PRK05329 anaerobic glycerol-3- 96.5 0.0036 7.9E-08 59.5 4.8 34 145-179 2-35 (422)
273 PRK06292 dihydrolipoamide dehy 96.5 0.0052 1.1E-07 58.3 5.8 58 144-203 168-231 (460)
274 PRK14694 putative mercuric red 96.5 0.0057 1.2E-07 58.4 6.2 59 145-204 178-241 (468)
275 PTZ00363 rab-GDP dissociation 96.5 0.0038 8.2E-08 59.7 4.9 37 145-182 4-41 (443)
276 PF00732 GMC_oxred_N: GMC oxid 96.4 0.0036 7.8E-08 55.5 4.3 33 147-180 2-35 (296)
277 PTZ00153 lipoamide dehydrogena 96.4 0.0041 8.8E-08 62.3 5.1 33 145-178 116-148 (659)
278 COG1249 Lpd Pyruvate/2-oxoglut 96.4 0.0046 1E-07 59.3 5.2 38 144-182 3-41 (454)
279 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.004 8.6E-08 51.0 4.1 32 147-179 1-32 (157)
280 cd01916 ACS_1 Acetyl-CoA synth 96.4 0.03 6.4E-07 56.7 11.0 64 30-106 355-418 (731)
281 PRK12770 putative glutamate sy 96.4 0.0082 1.8E-07 55.1 6.6 59 144-203 171-232 (352)
282 PRK08626 fumarate reductase fl 96.4 0.0041 8.9E-08 62.2 4.9 35 145-180 5-39 (657)
283 PRK02006 murD UDP-N-acetylmura 96.4 0.013 2.9E-07 56.4 8.2 69 145-226 7-77 (498)
284 PRK08275 putative oxidoreducta 96.4 0.0038 8.3E-08 61.0 4.5 35 145-180 9-45 (554)
285 TIGR01438 TGR thioredoxin and 96.4 0.004 8.6E-08 60.0 4.6 31 146-177 3-33 (484)
286 PLN02546 glutathione reductase 96.4 0.0064 1.4E-07 59.8 6.0 59 144-203 251-315 (558)
287 KOG2820|consensus 96.4 0.0044 9.5E-08 57.2 4.5 38 143-181 5-42 (399)
288 PRK00421 murC UDP-N-acetylmura 96.4 0.011 2.4E-07 56.3 7.5 69 143-226 5-74 (461)
289 PRK13748 putative mercuric red 96.4 0.0068 1.5E-07 59.0 6.0 59 145-204 270-333 (561)
290 PRK10262 thioredoxin reductase 96.3 0.0067 1.5E-07 54.7 5.5 59 144-203 145-207 (321)
291 PRK06175 L-aspartate oxidase; 96.3 0.0047 1E-07 58.7 4.6 34 145-180 4-37 (433)
292 TIGR02061 aprA adenosine phosp 96.3 0.0048 1E-07 61.3 4.7 33 147-180 1-37 (614)
293 COG0579 Predicted dehydrogenas 96.3 0.0054 1.2E-07 58.4 4.8 37 145-182 3-41 (429)
294 PRK07395 L-aspartate oxidase; 96.3 0.0052 1.1E-07 60.2 4.9 35 144-180 8-42 (553)
295 PRK06263 sdhA succinate dehydr 96.3 0.0047 1E-07 60.2 4.4 34 145-180 7-40 (543)
296 PRK14727 putative mercuric red 96.2 0.0084 1.8E-07 57.5 6.0 59 145-204 188-251 (479)
297 PRK03803 murD UDP-N-acetylmura 96.2 0.022 4.8E-07 54.0 8.7 71 143-226 4-76 (448)
298 TIGR01438 TGR thioredoxin and 96.2 0.0085 1.8E-07 57.7 6.0 58 145-203 180-242 (484)
299 COG1150 HdrC Heterodisulfide r 96.2 0.0086 1.9E-07 51.1 5.2 58 39-107 38-99 (195)
300 PRK06467 dihydrolipoamide dehy 96.2 0.0092 2E-07 57.1 5.8 57 145-203 174-236 (471)
301 PRK12843 putative FAD-binding 96.2 0.0069 1.5E-07 59.6 5.1 35 145-180 16-50 (578)
302 PRK08071 L-aspartate oxidase; 96.2 0.0058 1.3E-07 59.2 4.5 34 145-180 3-36 (510)
303 PF02737 3HCDH_N: 3-hydroxyacy 96.2 0.0075 1.6E-07 50.6 4.6 33 147-180 1-33 (180)
304 TIGR01423 trypano_reduc trypan 96.2 0.0094 2E-07 57.5 5.9 58 145-203 187-253 (486)
305 PRK11749 dihydropyrimidine deh 96.2 0.013 2.8E-07 55.7 6.7 60 144-203 272-333 (457)
306 TIGR03143 AhpF_homolog putativ 96.2 0.01 2.3E-07 58.0 6.2 60 144-204 142-202 (555)
307 PRK12845 3-ketosteroid-delta-1 96.1 0.0081 1.8E-07 59.1 5.3 36 143-180 14-49 (564)
308 PTZ00052 thioredoxin reductase 96.1 0.011 2.3E-07 57.3 6.0 58 145-203 182-244 (499)
309 PTZ00306 NADH-dependent fumara 96.1 0.0071 1.5E-07 64.3 5.2 36 144-180 408-443 (1167)
310 TIGR01176 fum_red_Fp fumarate 96.1 0.0071 1.5E-07 59.7 4.8 35 145-180 3-39 (580)
311 PRK09231 fumarate reductase fl 96.1 0.0074 1.6E-07 59.5 4.9 35 145-180 4-40 (582)
312 TIGR00551 nadB L-aspartate oxi 96.1 0.0079 1.7E-07 57.9 4.8 33 146-180 3-35 (488)
313 PRK14989 nitrite reductase sub 96.1 0.014 3.1E-07 60.1 6.8 83 145-229 3-112 (847)
314 KOG2852|consensus 96.0 0.0032 6.9E-08 57.2 1.8 38 142-180 7-50 (380)
315 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0085 1.8E-07 50.6 4.1 33 146-179 1-33 (185)
316 PTZ00318 NADH dehydrogenase-li 96.0 0.013 2.8E-07 55.3 5.6 59 145-204 173-251 (424)
317 TIGR02374 nitri_red_nirB nitri 95.9 0.014 3.1E-07 59.5 6.3 80 148-229 1-107 (785)
318 PRK08205 sdhA succinate dehydr 95.9 0.0094 2E-07 58.7 4.8 34 145-180 5-38 (583)
319 PRK06718 precorrin-2 dehydroge 95.9 0.042 9.2E-07 47.0 8.1 35 143-178 8-42 (202)
320 PRK13800 putative oxidoreducta 95.9 0.0089 1.9E-07 61.9 4.6 35 145-180 13-47 (897)
321 PRK07846 mycothione reductase; 95.9 0.015 3.3E-07 55.3 5.9 58 145-204 166-229 (451)
322 PTZ00153 lipoamide dehydrogena 95.9 0.013 2.9E-07 58.6 5.7 59 145-204 312-377 (659)
323 PRK04663 murD UDP-N-acetylmura 95.9 0.04 8.6E-07 52.3 8.6 67 146-226 8-76 (438)
324 PRK09077 L-aspartate oxidase; 95.8 0.011 2.3E-07 57.8 4.6 34 145-180 8-41 (536)
325 PRK02106 choline dehydrogenase 95.8 0.012 2.5E-07 57.6 5.0 34 145-179 5-39 (560)
326 TIGR03452 mycothione_red mycot 95.8 0.017 3.7E-07 55.0 6.0 35 145-180 169-203 (452)
327 TIGR03378 glycerol3P_GlpB glyc 95.8 0.012 2.5E-07 56.0 4.7 32 147-179 2-33 (419)
328 PRK12778 putative bifunctional 95.8 0.024 5.1E-07 57.5 7.2 59 144-202 569-629 (752)
329 PLN02815 L-aspartate oxidase 95.8 0.011 2.4E-07 58.5 4.7 34 145-180 29-62 (594)
330 KOG2415|consensus 95.8 0.011 2.3E-07 56.3 4.1 40 143-182 74-118 (621)
331 TIGR00314 cdhA CO dehydrogenas 95.8 0.036 7.9E-07 56.2 8.1 64 30-106 389-452 (784)
332 TIGR02485 CobZ_N-term precorri 95.8 0.0077 1.7E-07 56.8 3.2 30 150-180 1-30 (432)
333 COG0578 GlpA Glycerol-3-phosph 95.8 0.013 2.8E-07 57.3 4.8 36 144-180 11-46 (532)
334 TIGR01087 murD UDP-N-acetylmur 95.7 0.031 6.8E-07 52.6 7.3 69 147-226 1-70 (433)
335 PRK03806 murD UDP-N-acetylmura 95.7 0.047 1E-06 51.5 8.2 68 145-226 6-73 (438)
336 PRK12810 gltD glutamate syntha 95.7 0.029 6.4E-07 53.7 6.8 59 144-202 280-350 (471)
337 PF13738 Pyr_redox_3: Pyridine 95.6 0.017 3.6E-07 48.0 4.4 36 143-179 165-200 (203)
338 PF01488 Shikimate_DH: Shikima 95.6 0.026 5.6E-07 45.0 5.3 37 143-179 10-46 (135)
339 PRK00941 acetyl-CoA decarbonyl 95.6 0.012 2.5E-07 59.8 3.9 65 29-106 393-457 (781)
340 COG1206 Gid NAD(FAD)-utilizing 95.6 0.015 3.2E-07 53.9 4.2 35 145-180 3-37 (439)
341 KOG1298|consensus 95.6 0.015 3.3E-07 54.7 4.4 36 144-180 44-79 (509)
342 TIGR01082 murC UDP-N-acetylmur 95.6 0.032 6.9E-07 53.0 6.7 65 147-226 1-66 (448)
343 TIGR00136 gidA glucose-inhibit 95.6 0.016 3.6E-07 57.5 4.7 32 147-179 2-33 (617)
344 PRK05352 Na(+)-translocating N 95.5 0.013 2.8E-07 56.2 3.9 39 37-77 371-409 (448)
345 PRK07512 L-aspartate oxidase; 95.5 0.016 3.5E-07 56.2 4.5 33 145-180 9-41 (513)
346 COG1053 SdhA Succinate dehydro 95.5 0.02 4.3E-07 56.4 5.1 36 144-180 5-40 (562)
347 PF02254 TrkA_N: TrkA-N domain 95.5 0.11 2.3E-06 39.5 8.3 74 148-232 1-76 (116)
348 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.017 3.7E-07 52.2 4.3 33 146-179 3-35 (308)
349 COG1252 Ndh NADH dehydrogenase 95.5 0.014 3.1E-07 55.2 3.8 60 145-205 155-233 (405)
350 TIGR03452 mycothione_red mycot 95.4 0.019 4.2E-07 54.6 4.7 35 145-182 2-36 (452)
351 PRK07846 mycothione reductase; 95.4 0.02 4.2E-07 54.6 4.6 34 146-182 2-35 (451)
352 COG1252 Ndh NADH dehydrogenase 95.4 0.024 5.2E-07 53.7 5.1 35 145-180 3-39 (405)
353 PRK09260 3-hydroxybutyryl-CoA 95.4 0.02 4.4E-07 51.2 4.4 34 146-180 2-35 (288)
354 COG0569 TrkA K+ transport syst 95.4 0.022 4.8E-07 49.6 4.5 34 146-180 1-34 (225)
355 PRK01390 murD UDP-N-acetylmura 95.3 0.044 9.5E-07 52.1 6.8 66 144-226 8-73 (460)
356 PRK07066 3-hydroxybutyryl-CoA 95.3 0.022 4.7E-07 52.4 4.5 34 145-179 7-40 (321)
357 PRK14573 bifunctional D-alanyl 95.3 0.044 9.5E-07 56.1 7.1 66 146-226 5-71 (809)
358 PF13241 NAD_binding_7: Putati 95.3 0.018 4E-07 43.8 3.3 36 143-179 5-40 (103)
359 TIGR01936 nqrA NADH:ubiquinone 95.3 0.013 2.8E-07 56.1 3.0 40 37-78 370-409 (447)
360 PRK12814 putative NADPH-depend 95.3 0.05 1.1E-06 54.4 7.2 59 144-202 322-382 (652)
361 PF01593 Amino_oxidase: Flavin 95.2 0.02 4.4E-07 51.6 4.0 28 155-183 1-28 (450)
362 PRK04148 hypothetical protein; 95.2 0.023 5E-07 45.8 3.8 35 144-180 16-50 (134)
363 PRK07819 3-hydroxybutyryl-CoA 95.2 0.023 5.1E-07 51.1 4.2 34 146-180 6-39 (286)
364 TIGR01810 betA choline dehydro 95.2 0.019 4.2E-07 55.7 3.9 32 147-179 1-33 (532)
365 PRK08293 3-hydroxybutyryl-CoA 95.2 0.026 5.7E-07 50.4 4.5 33 146-179 4-36 (287)
366 PF00899 ThiF: ThiF family; I 95.1 0.032 6.9E-07 44.2 4.3 35 145-179 2-36 (135)
367 PRK07530 3-hydroxybutyryl-CoA 95.1 0.032 7E-07 49.9 4.8 34 145-179 4-37 (292)
368 PF01262 AlaDh_PNT_C: Alanine 95.1 0.039 8.5E-07 45.5 4.9 35 144-179 19-53 (168)
369 PRK06035 3-hydroxyacyl-CoA deh 95.0 0.031 6.6E-07 50.1 4.3 34 146-180 4-37 (291)
370 PRK12769 putative oxidoreducta 94.9 0.063 1.4E-06 53.6 6.8 59 144-202 467-527 (654)
371 PRK12475 thiamine/molybdopteri 94.9 0.11 2.4E-06 48.0 7.8 37 143-179 22-58 (338)
372 TIGR01318 gltD_gamma_fam gluta 94.8 0.086 1.9E-06 50.6 7.1 59 144-202 281-341 (467)
373 KOG1335|consensus 94.8 0.038 8.2E-07 52.1 4.4 36 144-180 38-73 (506)
374 PRK06719 precorrin-2 dehydroge 94.8 0.051 1.1E-06 44.7 4.8 35 143-178 11-45 (157)
375 PF06100 Strep_67kDa_ant: Stre 94.8 0.04 8.8E-07 53.2 4.7 36 145-181 2-41 (500)
376 COG3075 GlpB Anaerobic glycero 94.7 0.042 9.1E-07 50.9 4.5 34 145-179 2-35 (421)
377 PRK12771 putative glutamate sy 94.6 0.004 8.7E-08 60.9 -2.6 41 17-58 482-526 (564)
378 PRK09496 trkA potassium transp 94.5 0.21 4.5E-06 47.1 8.9 76 146-229 1-76 (453)
379 COG1004 Ugd Predicted UDP-gluc 94.5 0.17 3.6E-06 47.9 8.0 33 146-179 1-33 (414)
380 KOG1336|consensus 94.5 0.069 1.5E-06 51.3 5.5 59 145-204 213-278 (478)
381 PRK12775 putative trifunctiona 94.5 0.099 2.2E-06 54.9 7.2 59 144-202 570-630 (1006)
382 PF03446 NAD_binding_2: NAD bi 94.5 0.059 1.3E-06 44.2 4.5 33 146-179 2-34 (163)
383 PRK12779 putative bifunctional 94.5 0.091 2E-06 54.8 6.9 35 144-179 446-480 (944)
384 COG1453 Predicted oxidoreducta 94.5 0.086 1.9E-06 49.2 5.9 75 41-124 294-378 (391)
385 PF02558 ApbA: Ketopantoate re 94.5 0.064 1.4E-06 42.8 4.6 31 148-179 1-31 (151)
386 COG3573 Predicted oxidoreducta 94.4 0.051 1.1E-06 50.6 4.3 35 145-180 5-39 (552)
387 PRK05808 3-hydroxybutyryl-CoA 94.4 0.051 1.1E-06 48.4 4.3 34 146-180 4-37 (282)
388 PRK11064 wecC UDP-N-acetyl-D-m 94.4 0.049 1.1E-06 51.6 4.3 33 146-179 4-36 (415)
389 TIGR02354 thiF_fam2 thiamine b 94.3 0.069 1.5E-06 45.7 4.7 35 144-178 20-54 (200)
390 COG4529 Uncharacterized protei 94.3 0.063 1.4E-06 51.6 4.9 35 146-180 2-38 (474)
391 PF03807 F420_oxidored: NADP o 94.3 0.32 6.9E-06 35.7 7.7 74 147-235 1-79 (96)
392 cd01075 NAD_bind_Leu_Phe_Val_D 94.2 0.079 1.7E-06 45.2 4.9 36 143-179 26-61 (200)
393 TIGR03169 Nterm_to_SelD pyridi 94.2 0.1 2.2E-06 47.7 5.9 83 144-228 144-241 (364)
394 KOG1335|consensus 94.2 0.036 7.7E-07 52.3 2.8 60 144-204 210-275 (506)
395 KOG0404|consensus 94.1 0.052 1.1E-06 47.9 3.6 34 145-179 8-41 (322)
396 PRK06249 2-dehydropantoate 2-r 94.1 0.088 1.9E-06 47.6 5.2 35 144-179 4-38 (313)
397 PRK09424 pntA NAD(P) transhydr 94.1 0.064 1.4E-06 52.3 4.6 36 143-179 163-198 (509)
398 PF13183 Fer4_8: 4Fe-4S diclus 94.1 0.0059 1.3E-07 41.1 -1.9 56 38-106 1-56 (57)
399 PRK06522 2-dehydropantoate 2-r 94.1 0.074 1.6E-06 47.2 4.6 32 147-179 2-33 (304)
400 PRK06130 3-hydroxybutyryl-CoA 94.0 0.072 1.6E-06 48.0 4.5 34 145-179 4-37 (311)
401 PLN02545 3-hydroxybutyryl-CoA 94.0 0.092 2E-06 47.0 5.2 34 145-179 4-37 (295)
402 COG2303 BetA Choline dehydroge 94.0 0.061 1.3E-06 52.7 4.2 36 143-179 5-40 (542)
403 PRK10669 putative cation:proto 94.0 0.34 7.3E-06 47.5 9.3 75 145-230 417-493 (558)
404 TIGR01372 soxA sarcosine oxida 93.9 0.1 2.2E-06 54.6 6.0 58 144-203 316-373 (985)
405 cd00401 AdoHcyase S-adenosyl-L 93.9 0.085 1.9E-06 50.1 4.9 36 143-179 200-235 (413)
406 PRK12549 shikimate 5-dehydroge 93.9 0.092 2E-06 47.2 4.9 36 144-179 126-161 (284)
407 PRK05562 precorrin-2 dehydroge 93.9 0.33 7.1E-06 42.4 8.2 74 142-228 22-95 (223)
408 TIGR03026 NDP-sugDHase nucleot 93.9 0.071 1.5E-06 50.2 4.3 32 147-179 2-33 (411)
409 PRK12921 2-dehydropantoate 2-r 93.9 0.086 1.9E-06 47.0 4.7 30 147-177 2-31 (305)
410 TIGR00518 alaDH alanine dehydr 93.9 0.091 2E-06 49.1 4.9 35 144-179 166-200 (370)
411 PRK06259 succinate dehydrogena 93.9 0.29 6.3E-06 47.1 8.6 25 32-58 125-149 (486)
412 PRK08306 dipicolinate synthase 93.9 0.097 2.1E-06 47.4 5.0 35 144-179 151-185 (296)
413 COG0492 TrxB Thioredoxin reduc 93.8 0.15 3.4E-06 46.4 6.3 60 143-203 141-201 (305)
414 PRK01368 murD UDP-N-acetylmura 93.8 0.071 1.5E-06 51.1 4.3 34 144-179 5-38 (454)
415 PRK08229 2-dehydropantoate 2-r 93.8 0.086 1.9E-06 47.9 4.6 32 146-178 3-34 (341)
416 COG0029 NadB Aspartate oxidase 93.8 0.094 2E-06 50.7 4.9 50 147-202 9-58 (518)
417 KOG4254|consensus 93.8 0.064 1.4E-06 51.5 3.7 37 143-180 12-48 (561)
418 cd05311 NAD_bind_2_malic_enz N 93.7 0.12 2.6E-06 45.0 5.1 37 143-179 23-61 (226)
419 KOG2853|consensus 93.7 0.077 1.7E-06 49.5 4.0 35 144-179 85-123 (509)
420 PRK07531 bifunctional 3-hydrox 93.7 0.083 1.8E-06 51.1 4.4 33 146-179 5-37 (495)
421 PRK12809 putative oxidoreducta 93.7 0.2 4.3E-06 50.0 7.2 58 144-202 450-510 (639)
422 PRK14619 NAD(P)H-dependent gly 93.6 0.11 2.4E-06 46.9 5.0 34 145-179 4-37 (308)
423 COG3634 AhpF Alkyl hydroperoxi 93.6 0.091 2E-06 49.1 4.4 37 143-180 352-388 (520)
424 TIGR02853 spore_dpaA dipicolin 93.5 0.12 2.5E-06 46.7 4.8 36 143-179 149-184 (287)
425 cd01491 Ube1_repeat1 Ubiquitin 93.5 0.28 6E-06 44.4 7.2 37 144-180 18-54 (286)
426 TIGR02356 adenyl_thiF thiazole 93.4 0.13 2.9E-06 43.8 4.8 37 143-179 19-55 (202)
427 PRK14618 NAD(P)H-dependent gly 93.4 0.13 2.9E-06 46.7 5.2 34 145-179 4-37 (328)
428 TIGR03290 CoB_CoM_SS_C CoB--Co 93.4 0.1 2.3E-06 42.1 4.0 56 40-106 2-61 (144)
429 KOG2960|consensus 93.4 0.042 9.1E-07 48.2 1.7 37 145-182 76-114 (328)
430 PRK15116 sulfur acceptor prote 93.4 0.12 2.7E-06 46.3 4.7 37 143-179 28-64 (268)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.2 0.12 2.6E-06 50.3 4.7 35 145-180 5-39 (503)
432 PRK03562 glutathione-regulated 93.2 0.4 8.8E-06 47.8 8.5 76 145-231 400-477 (621)
433 PLN02785 Protein HOTHEAD 93.2 0.12 2.5E-06 51.3 4.6 34 145-180 55-88 (587)
434 PRK09853 putative selenate red 93.1 0.25 5.5E-06 51.9 7.2 37 144-180 667-704 (1019)
435 cd00757 ThiF_MoeB_HesA_family 93.1 0.15 3.3E-06 44.2 4.7 36 144-179 20-55 (228)
436 PRK05690 molybdopterin biosynt 93.1 0.16 3.4E-06 44.8 4.9 37 143-179 30-66 (245)
437 KOG4716|consensus 93.1 0.12 2.6E-06 48.2 4.2 35 142-177 16-50 (503)
438 TIGR02355 moeB molybdopterin s 93.1 0.15 3.3E-06 44.8 4.8 38 143-180 22-59 (240)
439 PRK08268 3-hydroxy-acyl-CoA de 93.1 0.11 2.4E-06 50.5 4.3 35 145-180 7-41 (507)
440 TIGR03315 Se_ygfK putative sel 93.1 0.26 5.7E-06 51.8 7.2 37 144-180 665-702 (1012)
441 COG3634 AhpF Alkyl hydroperoxi 93.0 0.084 1.8E-06 49.4 3.1 31 143-174 209-239 (520)
442 PRK00094 gpsA NAD(P)H-dependen 93.0 0.15 3.2E-06 45.8 4.7 32 147-179 3-34 (325)
443 cd01483 E1_enzyme_family Super 93.0 0.16 3.5E-06 40.4 4.5 33 147-179 1-33 (143)
444 cd01080 NAD_bind_m-THF_DH_Cycl 93.0 0.18 4E-06 42.0 4.9 36 143-179 42-78 (168)
445 PRK05708 2-dehydropantoate 2-r 92.9 0.16 3.4E-06 46.0 4.8 33 146-179 3-35 (305)
446 TIGR01317 GOGAT_sm_gam glutama 92.9 0.17 3.6E-06 48.9 5.2 37 144-180 282-318 (485)
447 TIGR00936 ahcY adenosylhomocys 92.9 0.16 3.5E-06 48.2 4.9 36 143-179 193-228 (406)
448 cd05191 NAD_bind_amino_acid_DH 92.7 0.26 5.6E-06 36.0 4.9 35 143-177 21-55 (86)
449 PRK09496 trkA potassium transp 92.7 0.67 1.5E-05 43.6 8.9 35 144-179 230-264 (453)
450 PRK08644 thiamine biosynthesis 92.7 0.2 4.3E-06 43.2 4.9 37 143-179 26-62 (212)
451 TIGR03376 glycerol3P_DH glycer 92.7 0.24 5.2E-06 45.9 5.7 31 147-178 1-39 (342)
452 TIGR01809 Shik-DH-AROM shikima 92.6 0.2 4.3E-06 45.0 5.0 36 144-179 124-159 (282)
453 PF00670 AdoHcyase_NAD: S-aden 92.6 0.54 1.2E-05 39.1 7.2 36 143-179 21-56 (162)
454 PRK08328 hypothetical protein; 92.5 0.2 4.4E-06 43.7 4.7 37 143-179 25-61 (231)
455 TIGR01505 tartro_sem_red 2-hyd 92.5 0.14 3E-06 45.8 3.7 32 147-179 1-32 (291)
456 PRK03659 glutathione-regulated 92.5 0.59 1.3E-05 46.4 8.5 77 145-232 400-478 (601)
457 PRK14620 NAD(P)H-dependent gly 92.4 0.18 4E-06 45.7 4.6 32 147-179 2-33 (326)
458 COG0373 HemA Glutamyl-tRNA red 92.4 0.36 7.8E-06 45.9 6.5 72 144-229 177-249 (414)
459 COG1087 GalE UDP-glucose 4-epi 92.4 0.4 8.7E-06 43.9 6.5 70 147-223 2-72 (329)
460 PRK05476 S-adenosyl-L-homocyst 92.3 0.2 4.4E-06 47.8 4.9 36 143-179 210-245 (425)
461 cd05213 NAD_bind_Glutamyl_tRNA 92.3 0.21 4.6E-06 45.4 4.8 36 144-179 177-212 (311)
462 cd01487 E1_ThiF_like E1_ThiF_l 92.3 0.23 5E-06 41.4 4.6 33 147-179 1-33 (174)
463 cd01492 Aos1_SUMO Ubiquitin ac 92.3 0.2 4.4E-06 42.6 4.3 37 144-180 20-56 (197)
464 PRK00683 murD UDP-N-acetylmura 92.2 0.19 4E-06 47.4 4.5 35 145-180 3-37 (418)
465 PLN02172 flavin-containing mon 92.2 0.2 4.3E-06 48.2 4.7 36 143-179 202-237 (461)
466 PRK07417 arogenate dehydrogena 92.2 0.2 4.2E-06 44.7 4.4 32 147-179 2-33 (279)
467 COG2072 TrkA Predicted flavopr 92.2 0.2 4.3E-06 47.9 4.6 38 142-180 172-209 (443)
468 KOG2404|consensus 92.2 0.18 3.9E-06 46.8 4.1 33 147-180 11-43 (477)
469 PRK11730 fadB multifunctional 92.2 0.18 4E-06 51.0 4.6 35 145-180 313-347 (715)
470 PRK14027 quinate/shikimate deh 92.1 0.25 5.3E-06 44.6 4.9 36 144-179 126-161 (283)
471 PF02826 2-Hacid_dh_C: D-isome 92.1 0.31 6.8E-06 40.5 5.2 38 142-180 33-70 (178)
472 PRK00045 hemA glutamyl-tRNA re 92.1 0.26 5.5E-06 46.8 5.2 37 143-179 180-216 (423)
473 cd05292 LDH_2 A subgroup of L- 92.0 0.24 5.3E-06 44.9 4.8 33 147-179 2-35 (308)
474 COG1063 Tdh Threonine dehydrog 92.0 0.21 4.5E-06 46.1 4.3 33 147-179 171-203 (350)
475 PRK15057 UDP-glucose 6-dehydro 92.0 0.22 4.8E-06 46.9 4.6 31 147-179 2-32 (388)
476 cd01485 E1-1_like Ubiquitin ac 91.9 0.26 5.6E-06 42.0 4.6 36 144-179 18-53 (198)
477 PRK15461 NADH-dependent gamma- 91.9 0.21 4.5E-06 45.0 4.2 32 147-179 3-34 (296)
478 COG2084 MmsB 3-hydroxyisobutyr 91.9 0.22 4.8E-06 45.1 4.3 34 146-180 1-34 (286)
479 PRK07688 thiamine/molybdopteri 91.9 0.26 5.7E-06 45.5 5.0 37 143-179 22-58 (339)
480 TIGR00561 pntA NAD(P) transhyd 91.8 0.26 5.5E-06 48.2 5.0 36 144-180 163-198 (511)
481 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.3 6.6E-06 40.9 4.9 35 144-179 27-62 (194)
482 PRK11199 tyrA bifunctional cho 91.8 0.4 8.6E-06 44.8 6.1 36 143-179 96-132 (374)
483 TIGR00384 dhsB succinate dehyd 91.8 0.14 2.9E-06 44.4 2.7 25 33-59 131-155 (220)
484 PRK05035 electron transport co 91.7 0.096 2.1E-06 52.9 2.0 58 37-106 367-424 (695)
485 PRK08640 sdhB succinate dehydr 91.7 0.54 1.2E-05 41.7 6.5 85 33-127 145-243 (249)
486 TIGR01763 MalateDH_bact malate 91.6 0.32 6.9E-06 44.2 5.1 34 146-179 2-35 (305)
487 PTZ00345 glycerol-3-phosphate 91.6 0.93 2E-05 42.4 8.3 37 143-180 9-52 (365)
488 cd01065 NAD_bind_Shikimate_DH 91.6 0.37 8.1E-06 38.3 5.0 35 144-179 18-53 (155)
489 PRK00258 aroE shikimate 5-dehy 91.6 0.32 7E-06 43.4 5.0 37 143-179 121-157 (278)
490 PF13746 Fer4_18: 4Fe-4S diclu 91.5 0.072 1.6E-06 37.9 0.6 24 36-61 46-69 (69)
491 PRK11559 garR tartronate semia 91.5 0.25 5.4E-06 44.1 4.2 33 146-179 3-35 (296)
492 TIGR01035 hemA glutamyl-tRNA r 91.5 0.3 6.5E-06 46.3 5.0 37 143-179 178-214 (417)
493 cd05291 HicDH_like L-2-hydroxy 91.4 0.31 6.6E-06 44.1 4.8 34 146-179 1-35 (306)
494 TIGR00507 aroE shikimate 5-deh 91.4 0.32 7E-06 43.1 4.8 36 143-179 115-150 (270)
495 TIGR02437 FadB fatty oxidation 91.4 0.3 6.4E-06 49.6 5.1 37 143-180 311-347 (714)
496 PLN02494 adenosylhomocysteinas 91.3 0.32 7E-06 47.0 5.0 36 143-179 252-287 (477)
497 PRK12480 D-lactate dehydrogena 91.3 0.33 7.2E-06 44.6 4.9 36 143-179 144-179 (330)
498 KOG2495|consensus 91.2 0.17 3.8E-06 48.2 3.0 84 117-204 193-296 (491)
499 KOG0024|consensus 91.2 0.35 7.6E-06 44.6 4.8 37 143-179 168-204 (354)
500 COG1251 NirB NAD(P)H-nitrite r 91.2 0.33 7.1E-06 49.1 5.0 57 145-202 145-208 (793)
No 1
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.9e-44 Score=339.08 Aligned_cols=207 Identities=32% Similarity=0.542 Sum_probs=177.9
Q ss_pred ccccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201 15 SCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94 (240)
Q Consensus 15 ~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~ 94 (240)
+.++.++|+++ ..+++.+++++|++||+.|..|||+.+||+|+|||+|++++++|||.+|+++|+++||||++||||||
T Consensus 16 ~~~r~~~~~e~-~~~~~~~~~~~ea~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~~~~~~a~~~~~~~np~p~~~grvC~ 94 (464)
T PRK12831 16 PEVRATNFEEV-CLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKIIAKYNALPAVCGRVCP 94 (464)
T ss_pred HHHHhcChhhh-cCCCCHHHHHHHHHhhcCCCCCchhhhCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhhccCC
Confidence 33477999998 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
++++||.+|+|+.. |+||+|+.||||+.|++.+.++... .+.+.++++|+|||+||+||++|++|+++|+ +|+|
T Consensus 95 ~~~~Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~~~~~~~----~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v 168 (464)
T PRK12831 95 QESQCEGKCVLGIK-GEPVAIGKLERFVADWARENGIDLS----ETEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTI 168 (464)
T ss_pred CCCChHHHhcCCCC-CCCeehhHHHHHHHHHHHHcCCCCC----CCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEE
Confidence 98899999999854 7899999999999999887776421 1245678999999999999999999999999 8999
Q ss_pred EecCCC-ccccc-c-----c---------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201 175 YEKNTY-DMVTN-V-----S---------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK 228 (240)
Q Consensus 175 ~e~~~~-~~~~~-~-----~---------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~ 228 (240)
||+.+. +|... . + .+.++..|+.|.++..++.+++++.+...-.||+||+++..
T Consensus 169 ~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa 238 (464)
T PRK12831 169 FEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEEGFDAVFIGSGA 238 (464)
T ss_pred EecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECCcCCHHHHHhccCCCEEEEeCCC
Confidence 998764 33211 0 1 12346789999999999888888877543259999999875
No 2
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=3.8e-43 Score=333.68 Aligned_cols=206 Identities=26% Similarity=0.462 Sum_probs=176.9
Q ss_pred cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201 16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT 95 (240)
Q Consensus 16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~ 95 (240)
.++..+|.|+ +.+++.+++++|++||++|..|||+.+||+|+|||+||+++++|||.+|+++|+++||||++||||||+
T Consensus 17 ~~~~~~~~e~-~~~~~~~~~~~~~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvC~~ 95 (467)
T TIGR01318 17 EERKTHFREI-YCPFDPGQAQYQADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSHQTNTLPEICGRVCPQ 95 (467)
T ss_pred HHHhcChHhh-cCCCCHHHHHHHHHhcccCCCccccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchHhhcccCCC
Confidence 3367899998 889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201 96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY 175 (240)
Q Consensus 96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~ 175 (240)
+++||++|+|+. .|+||+|+.||||+.|++...+|.+... +.+.++++|+|||+||+||++|.+|+++|+ +|+||
T Consensus 96 ~~~Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~~~~~~~~---~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~ 170 (467)
T TIGR01318 96 DRLCEGACTLND-EFGAVTIGNLERYITDTALAMGWRPDLS---HVVPTGKRVAVIGAGPAGLACADILARAGV-QVVVF 170 (467)
T ss_pred CCChHHhCcCCC-CCCCccHHHHHHHHHHHHHHhCCCCCCC---CcCCCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEE
Confidence 889999999985 4789999999999999987766543221 124578999999999999999999999999 79999
Q ss_pred ecCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 176 EKNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 176 e~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
|+.+.. |... ...+.++..|+.++++..++.++.++.+.. .||+||+++...
T Consensus 171 e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~--~~D~vilAtGa~ 237 (467)
T TIGR01318 171 DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDDLLE--DYDAVFLGVGTY 237 (467)
T ss_pred ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHHHHh--cCCEEEEEeCCC
Confidence 998753 2211 112345788999999999888888887764 499999997654
No 3
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=7.2e-43 Score=343.02 Aligned_cols=207 Identities=27% Similarity=0.480 Sum_probs=178.8
Q ss_pred ccccccCcccccccCCChhhhHhhhcccCcCC-CCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccC
Q psy16201 15 SCSLVNNFDDIKHTTLSERGALKEASRCLKCA-DAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC 93 (240)
Q Consensus 15 ~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~-~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC 93 (240)
+..+..+|+++ +..++..+++.||+||++|+ .|||+.+||+|+|||+|++++++|||.+|+++|+++||||++|||||
T Consensus 184 ~~~R~~~f~Ev-~~~~~~~~~~~ea~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~a~~~~~~~np~p~~~grvC 262 (639)
T PRK12809 184 ASERKTHFGEI-YCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQEGKIIEAAELCHQTSSLPEICGRVC 262 (639)
T ss_pred HHHHhcCHHHh-hccCCHHHHHHHHHHHhCCCCCCcccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCcchhhcccC
Confidence 34467889998 77999999999999999996 89999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEE
Q psy16201 94 PTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDIT 173 (240)
Q Consensus 94 ~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~ 173 (240)
|++++||.+|+|+.. |+||+|+.||||+.|++.+.+|.+... +.+.++++|+|||+||+||++|+.|+++|+ +|+
T Consensus 263 p~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~~~~~~~~~---~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vt 337 (639)
T PRK12809 263 PQDRLCEGACTLKDH-SGAVSIGNLERYITDTALAMGWRPDVS---KVVPRSEKVAVIGAGPAGLGCADILARAGV-QVD 337 (639)
T ss_pred CCCCChHHhccCCCc-CCCcChhHHHHHHHHHHHHhCCCCCCC---cccCCCCEEEEECcCHHHHHHHHHHHHcCC-cEE
Confidence 988899999999854 789999999999999998887743221 123568999999999999999999999999 799
Q ss_pred EEecCCC-cccccc--------------chHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 174 IYEKNTY-DMVTNV--------------SPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 174 v~e~~~~-~~~~~~--------------~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
|||+.+. ++++.+ ....+...|++|.++..++.+++++.+.. .||+||+++...
T Consensus 338 v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~l~~--~~DaV~latGa~ 406 (639)
T PRK12809 338 VFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTS--EYDAVFIGVGTY 406 (639)
T ss_pred EEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHHHHHh--cCCEEEEeCCCC
Confidence 9999885 332221 12345788999999999999999988765 499999997553
No 4
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1e-42 Score=342.54 Aligned_cols=206 Identities=28% Similarity=0.480 Sum_probs=176.8
Q ss_pred cccccCcccccccCCChhhhHhhhcccCcCC-CCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201 16 CSLVNNFDDIKHTTLSERGALKEASRCLKCA-DAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94 (240)
Q Consensus 16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~-~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~ 94 (240)
.++.++|+|+ +.+|+.++++.|++||++|+ .|||+.+||+|+|||+|++++++|||.+|+++|+++||||++||||||
T Consensus 202 ~~r~~~f~e~-~~~~~~~~a~~~~~rc~~C~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~np~p~~~grvCp 280 (654)
T PRK12769 202 EARKTGFDEI-YLPFRADQAQREASRCLKCGEHSICEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNSLPEITGRVCP 280 (654)
T ss_pred HHHhcCHHhh-cCCCCHHHHHHHHHhhhcCCCCCCccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchhHhcccCC
Confidence 3377899998 77899999999999999996 899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
++++||.+|+|+.. |+||+|+.||||+.|++.+.++.+.. + +.+.++++|+|||+||+||++|++|+++|+ +|+|
T Consensus 281 ~~~~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~~~~~~~-~--~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V 355 (654)
T PRK12769 281 QDRLCEGACTLRDE-YGAVTIGNIERYISDQALAKGWRPDL-S--QVTKSDKRVAIIGAGPAGLACADVLARNGV-AVTV 355 (654)
T ss_pred CCCChHHhccCCCC-CCCeecCHHHHHHHHHHHHhCCCCCC-c--ccccCCCEEEEECCCHHHHHHHHHHHHCCC-eEEE
Confidence 88899999999854 78999999999999998887764321 1 123578999999999999999999999999 7999
Q ss_pred EecCCC-ccccc-cc-------------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 175 YEKNTY-DMVTN-VS-------------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 175 ~e~~~~-~~~~~-~~-------------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
||+.+. +|+.. .+ ...++..|++|.++..+|.+++++.+.. .||+||+++...
T Consensus 356 ~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~~~~--~~DavilAtGa~ 423 (654)
T PRK12769 356 YDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLE--DYDAVFVGVGTY 423 (654)
T ss_pred EecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHHHHHh--cCCEEEEeCCCC
Confidence 999875 33221 11 2344678999999999999899888765 499999997643
No 5
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=351.27 Aligned_cols=206 Identities=25% Similarity=0.452 Sum_probs=177.8
Q ss_pred cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201 16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT 95 (240)
Q Consensus 16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~ 95 (240)
.++.++|+++ ...++.++++.|+.||++|..+||+.+||+|+|||+|+++++.|||.+|+++|+++||||++||||||+
T Consensus 308 ~er~~~f~ev-~~~~~~~~~~~ea~rC~~c~~~~C~~~CP~~~dip~~~~~i~~g~~~~A~~~i~~~np~p~~~grvCp~ 386 (1006)
T PRK12775 308 VERARNFKEV-NLGYSLEDALQEAERCIQCAKPTCIAGCPVQIDIPVFIRHVVVRDFDGALEVIYEASIFPSICGRVCPQ 386 (1006)
T ss_pred HHHhhCHHHH-hccCCHHHHHHHHHhccCCCCccccCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCChHHHhcCcCCC
Confidence 3467899998 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201 96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY 175 (240)
Q Consensus 96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~ 175 (240)
+.+||.+|+|+.. |+||+|+.||||++|++.+.++.. |. .+.++++|+|||+||+||++|++|+++|+ +|+||
T Consensus 387 ~~~Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~~~~~~---~~--~~~~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~ 459 (1006)
T PRK12775 387 ETQCEAQCIIAKK-HESVGIGRLERFVGDNARAKPVKP---PR--FSKKLGKVAICGSGPAGLAAAADLVKYGV-DVTVY 459 (1006)
T ss_pred CCCHHHhCcCCCC-CCCeeecHHHHHHHHHHHHcCCCC---CC--CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEE
Confidence 8899999999854 789999999999999987766532 21 23468899999999999999999999999 89999
Q ss_pred ecCCCc-ccc-ccc-------------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 176 EKNTYD-MVT-NVS-------------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 176 e~~~~~-~~~-~~~-------------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
|+.+.. +.. ..+ ...+...|++|++|..+|.+++++.+.....||+||++++..
T Consensus 460 E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 460 EALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred ecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCccCHHHHhhccCCCEEEEecCCC
Confidence 998753 321 111 134568899999999999999999886323599999998763
No 6
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=4.3e-42 Score=348.96 Aligned_cols=207 Identities=25% Similarity=0.359 Sum_probs=172.3
Q ss_pred cccccCccccccc-------CCChhh----hHhhhcccCcCCCCcc------------ccCCCCCCChHHHHHHHhcCCH
Q psy16201 16 CSLVNNFDDIKHT-------TLSERG----ALKEASRCLKCADAPC------------QKSCPTQIDIKSFITSISHKNY 72 (240)
Q Consensus 16 ~~~~~~f~~~~~~-------~~~~~~----~~~ea~rC~~c~~~~C------------~~aCP~~~di~~~i~~i~~g~~ 72 (240)
.++..+|+++... +++..+ ++.||+||++|++||| +.+||+|+|||+|++++++|||
T Consensus 153 ~~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~Ip~~i~~i~~g~~ 232 (944)
T PRK12779 153 EERAVDFDLVNQGYLGYQSLGYSVREVELFVWLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLGNGKH 232 (944)
T ss_pred HHHhhChHhhccccccccccCCCHHHhhhhHHHHHHHhcCCCCCCCCCCcccccccCcCCCCcCCCcHHHHHHHHHCCCH
Confidence 3467899998432 488877 6699999999999999 5799999999999999999999
Q ss_pred HHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCC---cCC---CCCCCCCCCCC
Q psy16201 73 YGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGIS---QIR---PPDAKVDFPDT 146 (240)
Q Consensus 73 ~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~---~~~---~p~~~~~~~~~ 146 (240)
.+|+++|+++||||++||||||++.+||++|+++ ++||+|+.||||+.|++.+.+.. .+. .|. .+.+++
T Consensus 233 ~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~---~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~--~~~~gk 307 (944)
T PRK12779 233 REALELIESCNPLPNVTGRVCPQELQCQGVCTHT---KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPW--AAAVKP 307 (944)
T ss_pred HHHHHHHHHhCChhHHhcCcCCCccCHHHhccCC---CcCcchhHHHHHHHHHHHhhchhhhhccccccccc--ccCCCC
Confidence 9999999999999999999999988999999986 46999999999999986543321 111 111 235689
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccc-cccch-------------HHHhccCceEEeCCccCcccCHH
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMV-TNVSP-------------RIVKGTTSRHLYGPEQGSFLNIE 211 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~-~~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e 211 (240)
+|+|||+||+||+||++|+++|| +|+|||+.+. ||+ ..-+| +.++..|++|++|..+|++++++
T Consensus 308 kVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~ 386 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence 99999999999999999999999 8999999874 432 11122 24567899999999999999999
Q ss_pred HHHhhcCCcEEEEecccc
Q psy16201 212 LISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 212 ~L~~~s~~d~V~~s~~~~ 229 (240)
+|... .||+||+++...
T Consensus 387 ~l~~~-~yDAV~LAtGA~ 403 (944)
T PRK12779 387 DLKAA-GFWKIFVGTGAG 403 (944)
T ss_pred Hhccc-cCCEEEEeCCCC
Confidence 98753 599999998764
No 7
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.9e-41 Score=319.22 Aligned_cols=206 Identities=29% Similarity=0.499 Sum_probs=175.2
Q ss_pred cccccCcccccccCCChhhhHhhhcccCcCC--CCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccC
Q psy16201 16 CSLVNNFDDIKHTTLSERGALKEASRCLKCA--DAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC 93 (240)
Q Consensus 16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~--~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC 93 (240)
.++.++|.++ +..+++.+++.|++||++|. .|||+.+||+|+|||+|++++++|||.+|+++++++||||++|||||
T Consensus 3 ~~~~~~~~e~-~~~~~~~~~~~ea~rc~~c~~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~~p~p~~~grvC 81 (449)
T TIGR01316 3 EERSKLFQEA-ALGYTEQLALVEAQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAICGRVC 81 (449)
T ss_pred HHhhcChHhh-ccCcCHHHHHHHHhhCcCccCCCCChhhhCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCChhHHhccCC
Confidence 3467899998 88999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhccccc---cCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCC
Q psy16201 94 PTSDLCMGGCNLYA---AEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD 170 (240)
Q Consensus 94 ~~~~~Ce~~C~r~~---~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~ 170 (240)
|++.+||.+|+|+. ..|+||+|+.|+||+.|+....++.... .+.+.++++|+|||+|++||++|++|+++|+
T Consensus 82 ~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~- 157 (449)
T TIGR01316 82 PQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEP---EKAPSTHKKVAVIGAGPAGLACASELAKAGH- 157 (449)
T ss_pred CCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCC---CCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-
Confidence 99889999999864 1478999999999999988766543211 1134678999999999999999999999999
Q ss_pred cEEEEecCCCc-ccccc------c--------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201 171 DITIYEKNTYD-MVTNV------S--------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK 228 (240)
Q Consensus 171 ~V~v~e~~~~~-~~~~~------~--------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~ 228 (240)
+|+|||+.+.. +...+ . .+.+...|++|+++..++.+++++.+... ||+||+++..
T Consensus 158 ~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~--yd~viiAtGa 228 (449)
T TIGR01316 158 SVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQ--YDAVFIGTGA 228 (449)
T ss_pred cEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCcCCHHHHHhh--CCEEEEeCCC
Confidence 79999998643 22110 1 12346789999999988888888877654 9999999875
No 8
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=4.1e-40 Score=312.91 Aligned_cols=205 Identities=23% Similarity=0.427 Sum_probs=174.3
Q ss_pred ccccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201 15 SCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94 (240)
Q Consensus 15 ~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~ 94 (240)
+.+++++|+|+ ..+++.+++.+|++||++|..+||+.+||.|+|+|+||+++++|||.+|+++|+++||||++||||||
T Consensus 20 ~~~~~~~~~e~-~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vC~ 98 (471)
T PRK12810 20 VAERIKDFKEF-YEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAERLHQTNNFPEFTGRVCP 98 (471)
T ss_pred HHHHHhchHhh-hcccCHHHHHHHHHhccCCCCCcccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhHHhcCcCC
Confidence 34477999998 77999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
+ +||.+|+|+. .|+||+|+.||||+.|+.....+.. |..+.+..+++|+|||+|++||++|.+|+++|+ +|+|
T Consensus 99 ~--~Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~~~~~---~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~v 171 (471)
T PRK12810 99 A--PCEGACTLNI-NFGPVTIKNIERYIIDKAFEEGWVK---PDPPVKRTGKKVAVVGSGPAGLAAADQLARAGH-KVTV 171 (471)
T ss_pred c--hhHHhccCCC-CCCCccHHHHHHHHHHHHHHcCCCC---CCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEE
Confidence 9 8999999986 4789999999999999887665411 111234678899999999999999999999999 7999
Q ss_pred EecCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 175 YEKNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 175 ~e~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
||+.+.. +... ...+.+...|+++.++..++.+++.+.+... ||+||+++...
T Consensus 172 ie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~~--~d~vvlAtGa~ 239 (471)
T PRK12810 172 FERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAE--YDAVFLGTGAY 239 (471)
T ss_pred EecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHHHHHhh--CCEEEEecCCC
Confidence 9998753 2211 0123456789999999988877777776654 99999997654
No 9
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=8.5e-40 Score=326.34 Aligned_cols=205 Identities=29% Similarity=0.536 Sum_probs=175.1
Q ss_pred ccccC-cccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201 17 SLVNN-FDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT 95 (240)
Q Consensus 17 ~~~~~-f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~ 95 (240)
++..+ |+++ ...++.++++.||+||++|+.++|+.+||.++|||+|++++++|||.+|+++|+++||||++||||||+
T Consensus 306 ~r~~~~f~ev-~~~~~~~~a~~ea~rC~~c~~~~C~~~Cp~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~ 384 (752)
T PRK12778 306 YRAHNRFEEV-NLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIERGNFLEAAKILKETSALPAVCGRVCPQ 384 (752)
T ss_pred HHhcCChhhc-cCCCCHHHHHHHHHHhhcCCCCcccccCcCCCCHHHHHHHHHCCCHHHHHHHHHhhCCchhHhcCcCCC
Confidence 36677 9998 779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccccccCC-CccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 96 SDLCMGGCNLYAAEE-GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 96 ~~~Ce~~C~r~~~~~-~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
+.+||++|+|+.. + .||+|+.||||+.|+..+..+... |.. .+.++++|+|||+||+||++|.+|+++|+ +|+|
T Consensus 385 ~~~Ce~~c~~~~~-~~~~v~i~~l~r~~~d~~~~~~~~~~--~~~-~~~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v 459 (752)
T PRK12778 385 EKQCESKCIHGKM-GEEAVAIGYLERFVADYERESGNISV--PEV-AEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTV 459 (752)
T ss_pred cCchHHhcccCCC-CCCCcCHHHHHHHHHHHHHHhCCCCC--CCC-CCCCCCEEEEECcCHHHHHHHHHHHHCCC-eEEE
Confidence 8899999999854 5 899999999999998765543221 211 34678999999999999999999999999 8999
Q ss_pred EecCCC-cccccc-c-----h--------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201 175 YEKNTY-DMVTNV-S-----P--------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK 228 (240)
Q Consensus 175 ~e~~~~-~~~~~~-~-----~--------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~ 228 (240)
||+.+. +|...+ + + +.+...|++|.++..+|++++++.+... .||+||+++..
T Consensus 460 ~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~l~~~-~ydavvlAtGa 527 (752)
T PRK12778 460 FEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEE-GFKGIFIASGA 527 (752)
T ss_pred EecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcCCHHHHhhc-CCCEEEEeCCC
Confidence 999764 332211 1 1 2346789999999999999999988543 59999999875
No 10
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=4e-39 Score=307.53 Aligned_cols=203 Identities=22% Similarity=0.417 Sum_probs=172.7
Q ss_pred ccccCcccccccCCChhhhHhhhcccCcCCCCcccc--CCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201 17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQK--SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94 (240)
Q Consensus 17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~--aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~ 94 (240)
++.++|.++ +.+++.+++.+|++||++|..|||+. +||+|+|||+|++++.+|||.+|+++|+++||||.+||||||
T Consensus 20 ~~~~~~~~~-~~~~~~~~~~~~~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~ 98 (485)
T TIGR01317 20 TRLKDWKEF-TNPFDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFRGRWKEALDRLHATNNFPEFTGRVCP 98 (485)
T ss_pred HHhhCHHHH-hCCCCHHHHHHHHHhccCCCCCCCCCCCCCCCCCcHHHHHHHHHCCCHHHHHHHHHhhCCchhHHhCcCC
Confidence 466899998 88999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
+ +||.+|+|+.. ++||+|+.||||+.|+..+..+..... +.+..+++|+|||+|++|+++|.+|+++|+ +|+|
T Consensus 99 ~--~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~~~~~~~~~---~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v 171 (485)
T TIGR01317 99 A--PCEGACTLGIS-EDPVGIKSIERIIIDKGFQEGWVQPRP---PSKRTGKKVAVVGSGPAGLAAADQLNRAGH-TVTV 171 (485)
T ss_pred h--hhHHhccCCCC-CCCcchhHHHHHHHHHHHHcCCCCCCC---CcCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEE
Confidence 9 99999999854 789999999999999877666533221 133567899999999999999999999999 7999
Q ss_pred EecCCCcc--ccc----------c---chHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 175 YEKNTYDM--VTN----------V---SPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 175 ~e~~~~~~--~~~----------~---~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
||+.+..+ +.. . ..+.++..|+++.++..++.+++.+.+... ||+||+++...
T Consensus 172 ~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~--~d~VilAtGa~ 239 (485)
T TIGR01317 172 FEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQ--FDAVVLAGGAT 239 (485)
T ss_pred EecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCHHHHHhh--CCEEEEccCCC
Confidence 99887532 110 0 113446789999999988877777766544 99999997655
No 11
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2.1e-38 Score=299.87 Aligned_cols=205 Identities=33% Similarity=0.582 Sum_probs=173.0
Q ss_pred cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201 16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT 95 (240)
Q Consensus 16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~ 95 (240)
.+++.+|.++ +.++++.+++.|++||++|..+||+.+||.|+|||+|++++++|||.+|+++++++||||.+||||||+
T Consensus 17 ~~r~~~~~e~-~~~~~~~~~~~e~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vc~~ 95 (457)
T PRK11749 17 EERAQNFDEV-APGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAETILETNPLPAVCGRVCPQ 95 (457)
T ss_pred HHHhcChHhh-cCCCCHHHHHHHHHHhhCCCCCcccccCCCcCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhcCcCCC
Confidence 3477899998 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201 96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY 175 (240)
Q Consensus 96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~ 175 (240)
+..|+++|+|+.. +.||+|+.|++|+.++.....+..+. +.+..+++|+|||+||+||++|..|+++|+ +|+||
T Consensus 96 ~~~C~~~C~~~~~-~~~v~i~~l~~~~~~~~~~~~~~~~~----~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~li 169 (457)
T PRK11749 96 ERLCEGACVRGKK-GEPVAIGRLERYITDWAMETGWVLFK----RAPKTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIF 169 (457)
T ss_pred ccCHHHHhcCCCC-CCCcchHHHHHHHHHHHHhcCCCCCC----CCccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEE
Confidence 4449999998754 68999999999999987765543211 134668899999999999999999999999 89999
Q ss_pred ecCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 176 EKNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 176 e~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
|+.+.. +... .....+...|++|.++..++..++++.+.. .||.|++++...
T Consensus 170 e~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~--~~d~vvlAtGa~ 236 (457)
T PRK11749 170 EARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRA--GYDAVFIGTGAG 236 (457)
T ss_pred ccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCccCHHHHHh--hCCEEEEccCCC
Confidence 998753 2111 111344678999999998887778776654 499999997653
No 12
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=3.9e-37 Score=291.40 Aligned_cols=203 Identities=30% Similarity=0.457 Sum_probs=178.8
Q ss_pred ccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCc
Q psy16201 19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDL 98 (240)
Q Consensus 19 ~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~ 98 (240)
.++|.+. ..+++..++..+++||++|++ +|+.+||++++||.|+.++++|++.+|++.|.++|+||++|||+||++..
T Consensus 3 ~~~~~e~-~~~~~~~~a~~~a~rCl~C~~-~C~~~cp~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~~~gRvcp~~~~ 80 (457)
T COG0493 3 PKDFREA-VVGSGPEAAIYEAARCLDCGD-PCITGCPVHNDIPEPIGLVREGVDHEAIKLIHKTNNLPAITGRVCPLGNL 80 (457)
T ss_pred cccceee-ecCCCHHHHHHHHHHHHcCCC-ccccCCcCCCcCCCHHHHHhcCCcHHHHHHHHHhCCCccccCccCCCCCc
Confidence 3578887 789999999999999999999 99999999999999999999999999999999999999999999999667
Q ss_pred hhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 99 CMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 99 Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
||++|+++. .+.||+|+.|++|+.|.++..+|.+.. .+...++++|+|||+||+||++|..|++.|| .|+|||+.
T Consensus 81 ceg~cv~~~-~~~~v~i~~le~~i~d~~~~~g~i~~~---~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~ 155 (457)
T COG0493 81 CEGACVLGI-EELPVNIGALERAIGDKADREGWIPGE---LPGSRTGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERV 155 (457)
T ss_pred eeeeeeecc-CCCchhhhhHHHHHhhHHHHhCCCCCC---CCCCCCCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCc
Confidence 999999874 478999999999999999988875443 2235678999999999999999999999999 89999999
Q ss_pred CCcc--ccccch-------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccch
Q psy16201 179 TYDM--VTNVSP-------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVL 230 (240)
Q Consensus 179 ~~~~--~~~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~~ 230 (240)
+..+ +..-+| ..++..|++|.+|..+|+++++++|.+. ||+||+.+....
T Consensus 156 ~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e--~Dav~l~~G~~~ 220 (457)
T COG0493 156 ALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKE--YDAVFLATGAGK 220 (457)
T ss_pred CCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHh--hCEEEEeccccC
Confidence 8644 222122 3557889999999999999999999986 899999976553
No 13
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=8.5e-37 Score=308.98 Aligned_cols=199 Identities=26% Similarity=0.405 Sum_probs=160.5
Q ss_pred cCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCch
Q psy16201 20 NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLC 99 (240)
Q Consensus 20 ~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~C 99 (240)
++|++.+.+ .+...+.+..+|++|..|||+.+||+|+|||+|++++++|+|++|+++|+++||||++||||||| +|
T Consensus 421 ~~~~~~~~~--~~~~~~~~~~p~~~c~~aPC~~~CP~~~dIp~yi~li~~g~~~~A~~~I~~~nPlP~icGrVCph--~C 496 (1019)
T PRK09853 421 EYTQKHWKP--VESRKVAEDLPLTDCYVAPCVTACPINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDH--QC 496 (1019)
T ss_pred hhhhhhhhc--cccccccccCCccCCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCc--hh
Confidence 556655333 25556778889999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 100 MGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 100 e~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
|.+|+|+.. |+||+|+.||||++|++.......+..|. .+.++++|+|||+||+||++|++|+++|+ +|+|||+.+
T Consensus 497 e~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~--~~~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 497 QYNCTRLDY-DEAVNIRELKKVALEKGWDEYKQRWHKPA--GIGSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred HHHhcCCCC-CCCeeccHHHHHHHhhHHHhcccccCCCC--ccCCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 999999864 78999999999999987654332221121 24678999999999999999999999999 899999986
Q ss_pred C-cccc-ccch-------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 180 Y-DMVT-NVSP-------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 180 ~-~~~~-~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
. +|.. ..+| +.+...|++|.+|..+ +++++.+... +||+||++++..
T Consensus 573 ~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V--di~le~L~~~-gYDaVILATGA~ 634 (1019)
T PRK09853 573 NAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP--DLTVEQLKNE-GYDYVVVAIGAD 634 (1019)
T ss_pred ccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee--EEEhhhheec-cCCEEEECcCCC
Confidence 4 3321 1111 2345779999999876 4667766543 599999997664
No 14
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=5.3e-36 Score=304.03 Aligned_cols=189 Identities=29% Similarity=0.483 Sum_probs=152.7
Q ss_pred hhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCC
Q psy16201 32 ERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEG 111 (240)
Q Consensus 32 ~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~ 111 (240)
+...+.+..++.+|..+||+.+||+|+|||+||+++++|||++|+++|+++||||++||||||| +||.+|+|+.. |+
T Consensus 429 ~~~~~~~~~p~~~c~~aPC~~~CP~~~dIp~yi~~i~~g~~~~A~~vi~~~nPlp~icGrVC~h--~Ce~~C~R~~~-d~ 505 (1012)
T TIGR03315 429 ESRKLRKTLPLTDCYVAPCTTGCPINQDIPEYIRLVGEKRYLEALEVIYDKNPLPAITGTICDH--QCQYKCTRLDY-DE 505 (1012)
T ss_pred cccchhccCccccCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCc--chHHHhcCCCC-CC
Confidence 4455667788899999999999999999999999999999999999999999999999999999 99999999754 79
Q ss_pred ccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c-ccccch-
Q psy16201 112 PINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M-VTNVSP- 188 (240)
Q Consensus 112 pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~-~~~~~~- 188 (240)
||+|+.||||++|++.......+..|. ++.++++|+|||+||+||+||++|+++|+ +|+|||+.+.. | +...+|
T Consensus 506 pV~I~~Lkr~a~d~~~~~~~~~~~~~~--~~~~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~~IP~ 582 (1012)
T TIGR03315 506 SVNIREMKKVAAEKGYDEYKTRWHKPQ--GKSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNIIPE 582 (1012)
T ss_pred CCcccHHHHHHHhhHHHhcCccCCCCC--CCCCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeeecccc
Confidence 999999999999987654322221111 23567899999999999999999999999 89999998753 2 222111
Q ss_pred ------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 189 ------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 189 ------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
+.+...|++|++|.. .+++++.+... +||+|+++++..
T Consensus 583 ~rlp~e~l~~~ie~l~~~GVe~~~g~~--~d~~ve~l~~~-gYDaVIIATGA~ 632 (1012)
T TIGR03315 583 FRISAESIQKDIELVKFHGVEFKYGCS--PDLTVAELKNQ-GYKYVILAIGAW 632 (1012)
T ss_pred cCCCHHHHHHHHHHHHhcCcEEEEecc--cceEhhhhhcc-cccEEEECCCCC
Confidence 234567999998853 34566766543 699999997654
No 15
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=285.83 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=168.9
Q ss_pred ccccccccccccccccc---cCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHH
Q psy16201 3 EQSSLAGINVFTSCSLV---NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAI 79 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i 79 (240)
.+.|+|+++++.+.+.. ++|.+.+. .....-...+.++..|||+.+||+|+|||+|+++|++|||.+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~a~~~~ 78 (564)
T PRK12771 4 TDNSDCAIGYEAAFDALTLPDGFSDEIA-----TGPWRHKCPVYVDQTPPCNAACPAGEDIRGWLALVRGGDYEYAWRRL 78 (564)
T ss_pred cccccCccccccccccccccccchHhhh-----ccccccccccccCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHH
Confidence 47899999999998844 44444322 11112223346789999999999999999999999999999999999
Q ss_pred HhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHH
Q psy16201 80 FSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLS 159 (240)
Q Consensus 80 ~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~ 159 (240)
+++||||++||||||+ +||.+|+|+. .+.||+|+.++||+.|+....++... .+....+++|+|||+||+||+
T Consensus 79 ~~~np~~~~~grvc~~--~ce~~C~r~~-~~~~v~i~~l~r~~~~~~~~~~~~~~----~~~~~~g~~V~VIGaGpaGL~ 151 (564)
T PRK12771 79 TKDNPFPAVMGRVCYH--PCESGCNRGQ-VDDAVGINAVERFLGDYAIANGWKFP----APAPDTGKRVAVIGGGPAGLS 151 (564)
T ss_pred HHhCCcchHhhCcCCc--hhHHhccCCC-CCCCcCHHHHHHHHHHHHHHcCCCCC----CCCCCCCCEEEEECCCHHHHH
Confidence 9999999999999999 9999999985 47899999999999998877665321 113467899999999999999
Q ss_pred HHHHHHHcCCCcEEEEecCCCc-cccc-----------cc---hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201 160 CATFLSRMGYDDITIYEKNTYD-MVTN-----------VS---PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY 224 (240)
Q Consensus 160 ~a~~L~~~G~~~V~v~e~~~~~-~~~~-----------~~---~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~ 224 (240)
+|+.|+++|+ +|+|||+.+.. +... .. .+.+...|+.+.++..+|.++..+.+... ||+||+
T Consensus 152 aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~~~~~--~D~Vi~ 228 (564)
T PRK12771 152 AAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLEQLEGE--FDAVFV 228 (564)
T ss_pred HHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHHHHHhh--CCEEEE
Confidence 9999999999 79999988753 2211 01 12346789999999888777777776654 999999
Q ss_pred ecccc
Q psy16201 225 SNCKV 229 (240)
Q Consensus 225 s~~~~ 229 (240)
++...
T Consensus 229 AtG~~ 233 (564)
T PRK12771 229 AIGAQ 233 (564)
T ss_pred eeCCC
Confidence 97543
No 16
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=282.54 Aligned_cols=181 Identities=24% Similarity=0.450 Sum_probs=150.8
Q ss_pred hcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchh
Q psy16201 39 ASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGL 118 (240)
Q Consensus 39 a~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l 118 (240)
+.+|.+|. +||+.+||+|+|||+|++++++|||.+|+++|+++||||++||||||+ +||++|+|+.. ++||.|..|
T Consensus 94 ~~~c~~C~-~pC~~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~--~Ce~~C~r~~~-~~~v~i~~l 169 (652)
T PRK12814 94 EQHCGDCL-GPCELACPAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPA--PCEEACRRHGV-DEPVSICAL 169 (652)
T ss_pred hhcccccC-CccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHhhCCccceeeCCcCc--hhhHHHcCCCC-CCCcchhHH
Confidence 45799997 789999999999999999999999999999999999999999999999 99999999754 789999999
Q ss_pred hHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cccccc-c---------
Q psy16201 119 QQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTNV-S--------- 187 (240)
Q Consensus 119 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~~-~--------- 187 (240)
++|+.++.....+.. .|.. .+..+++|+|||+||+||++|++|+++|+ +|+|||+.+. +|.+.+ +
T Consensus 170 ~r~~~~~~~~~~~~~--~~~~-~~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~ 245 (652)
T PRK12814 170 KRYAADRDMESAERY--IPER-APKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESV 245 (652)
T ss_pred HHHHHHHHHhcCccc--CCCC-CCCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHH
Confidence 999999876543321 1211 34567899999999999999999999999 7999999875 332221 1
Q ss_pred ----hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 188 ----PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 188 ----~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
...+...|+++.++..++.+++++.+... ||+||+++...
T Consensus 246 ~~~~~~~l~~~Gv~i~~~~~v~~dv~~~~~~~~--~DaVilAtGa~ 289 (652)
T PRK12814 246 IDADIAPLRAMGAEFRFNTVFGRDITLEELQKE--FDAVLLAVGAQ 289 (652)
T ss_pred HHHHHHHHHHcCCEEEeCCcccCccCHHHHHhh--cCEEEEEcCCC
Confidence 13446789999999988888888877654 99999997654
No 17
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=100.00 E-value=6.8e-34 Score=285.65 Aligned_cols=203 Identities=19% Similarity=0.270 Sum_probs=163.0
Q ss_pred cccCcccccccCCChhhhHhhhcccCcCCC------------------------------------------CccccCCC
Q psy16201 18 LVNNFDDIKHTTLSERGALKEASRCLKCAD------------------------------------------APCQKSCP 55 (240)
Q Consensus 18 ~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~------------------------------------------~~C~~aCP 55 (240)
..+.|+.+ +..++.++++.|++.|+.|+. +||+.+||
T Consensus 207 ~r~gf~lt-d~~~~~~~~~~~~~yci~ch~~~~d~cskg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~~CP 285 (1028)
T PRK06567 207 ERVDFDYT-DSFLNLDEALNHSHYCIYCHKQDKDSCSKGLLQPQNRHCEERSDVAISGDLTRLPRSLQSLAMTDLKQGCP 285 (1028)
T ss_pred hcCCcccc-CCCCCHHHHhhhCceEEEeecCCCCccccCCcccCCCccccccccccccccccccccccccCCCccccCCC
Confidence 56789987 889999999999999999962 18999999
Q ss_pred CCCChHHHHHHHhcCCHHHHHHHHHhhCCCCcccc-ccCCCCCchhhhccccccCCCccccchhhHHHHHHHH-------
Q psy16201 56 TQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCG-MVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFK------- 127 (240)
Q Consensus 56 ~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cg-rvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~------- 127 (240)
+|+|||+|+..+++|++.+|+++|+++||||++|| |||| +||++|+|+ .|+||+|+.||||+.|...
T Consensus 286 a~~~Ip~~~~~~~~g~~~~Al~ii~~~NP~p~~~G~RVCp---~CE~aC~r~--~dePV~I~~ler~i~d~~~~~~~~~e 360 (1028)
T PRK06567 286 LKQKISEMNYVKAQGFNLSALAIIVIDNPMVAATGHRICN---DCSKACIYQ--KQDPVNIPLIESNILEETLKLPYGLE 360 (1028)
T ss_pred CCCcchHHHHHHHCCCHHHHHHHHHHhCCChHhhCCccCc---chHHHhcCC--CCCCeehhHHHHHHhhhhhhhccccc
Confidence 99999999999999999999999999999999999 9999 599999997 4789999999999998532
Q ss_pred ----hhCCCcC--CCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC----------------------
Q psy16201 128 ----DMGISQI--RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT---------------------- 179 (240)
Q Consensus 128 ----~~~~~~~--~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~---------------------- 179 (240)
..+|.+. ..| .|.+.++++|+|||+||+||++|++|+++|| +|+|||+..
T Consensus 361 ~y~~~~~~~~~~~~~~-~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L 438 (1028)
T PRK06567 361 IYLLLTRWNPLNIYAP-LPKEPTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLPFDVHKPIKFWHEYKNLL 438 (1028)
T ss_pred ccccccccccccccCC-CCCCCCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccccccccccchhhhhccch
Confidence 1233221 112 1245689999999999999999999999999 799999853
Q ss_pred -------Ccccccc-ch-----------HHHhcc--CceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 180 -------YDMVTNV-SP-----------RIVKGT--TSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 180 -------~~~~~~~-~~-----------~~~~~~--gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
.||+..+ ++ +.+... +++|..|+.+|.+++++++... +||+||++++..
T Consensus 439 ~er~p~~~GG~~~yGIp~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~-gyDAV~IATGA~ 508 (1028)
T PRK06567 439 SERMPRGFGGVAEYGITVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDL-GFDHIAFCIGAG 508 (1028)
T ss_pred hhhccccCCcccccCccccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhc-CCCEEEEeCCCC
Confidence 1221110 00 111223 4666669999999999998643 699999998763
No 18
>KOG0399|consensus
Probab=100.00 E-value=1e-33 Score=280.74 Aligned_cols=203 Identities=21% Similarity=0.389 Sum_probs=177.8
Q ss_pred ccccCcccccccCCChhhhHhhhcccCcCCCCcccc--CCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201 17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQK--SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP 94 (240)
Q Consensus 17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~--aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~ 94 (240)
.+.++|+|++. ......+..++.||++|++|+|+. +||++..||.|..++.+.+|++|+..++++|-||+.+|||||
T Consensus 1662 ~r~ndw~e~~~-~~~~~~~~~qtarcmdcgtpfc~~~~gcpl~n~ip~~nelvfk~~wk~al~~ll~tnnfpeftgrvcp 1740 (2142)
T KOG0399|consen 1662 ERLNDWKEVYD-FEAVSNLREQTARCMDCGTPFCQSDSGCPLGNIIPKFNELVFKNQWKEALEQLLETNNFPEFTGRVCP 1740 (2142)
T ss_pred hhcccHHHhhh-hccchhhHHHhhHHhcCCCccccCCCCCccccccccHHHHHHHHHHHHHHHHHHhhCCCccccCccCC
Confidence 36689999854 445677889999999999999996 699999999999999999999999999999999999999999
Q ss_pred CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
+ |||++|+.+. .+.||.|+.+++.+.|++++.+|.. |..|+..++++|+|||+||+||+||-+|.+.|| .|+|
T Consensus 1741 a--pcegactlgi-ie~pv~iksie~aiid~af~egwm~---p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh-~v~v 1813 (2142)
T KOG0399|consen 1741 A--PCEGACTLGI-IEPPVGIKSIECAIIDKAFEEGWMK---PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGH-TVTV 1813 (2142)
T ss_pred C--CcCcceeeec-ccCCccccchhhHHHHHHHHhcCCc---cCCcccccCcEEEEEccCchhhhHHHHHhhcCc-EEEE
Confidence 9 9999999875 4789999999999999999999964 433456889999999999999999999999999 7999
Q ss_pred EecCCCcc--ccccch-------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 175 YEKNTYDM--VTNVSP-------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 175 ~e~~~~~~--~~~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
|||.++.| +..-+| +.+...|++|..|+++|+.+++++|... +|+|+++....
T Consensus 1814 yer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~l~~~--~daiv~a~gst 1881 (2142)
T KOG0399|consen 1814 YERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDELKKE--NDAIVLATGST 1881 (2142)
T ss_pred EEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHHHHhhc--cCeEEEEeCCC
Confidence 99998743 111111 3457899999999999999999999986 99999996544
No 19
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-32 Score=267.24 Aligned_cols=201 Identities=27% Similarity=0.507 Sum_probs=167.4
Q ss_pred ccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCC
Q psy16201 17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTS 96 (240)
Q Consensus 17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~ 96 (240)
.+...|.++ ...++..++.+++.+|+.|+ +|+.+||.++++++|++++++|++.+|++.+++.||||++||||||+
T Consensus 163 ~r~~~~~~~-~~g~~~~~~~~~~~~C~~Cg--~C~~~CP~~~~i~~~~~~i~~~~~~~a~~~~~~~np~~~~~g~vC~~- 238 (604)
T PRK13984 163 ERVKSFIEI-VKGYSKEQAMQEAARCVECG--ICTDTCPAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSMVCGRVCTH- 238 (604)
T ss_pred HHHhchhhh-ccCCCHHHHHHhhhhhcCCC--cccccCCCCCCHHHHHHHHHcCCHHHHHHHHHhcCCccchhhCcCCc-
Confidence 366778887 66778888999999999998 69999999999999999999999999999999999999999999999
Q ss_pred CchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEe
Q psy16201 97 DLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176 (240)
Q Consensus 97 ~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e 176 (240)
+||++|+|+. .++||.|+.||||+.|+.....+.....+ +.+.++++|+|||+|++|+++|..|+++|+ +|+|||
T Consensus 239 -~Ce~~C~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie 313 (604)
T PRK13984 239 -KCETVCSIGH-RGEPIAIRWLKRYIVDNVPVEKYSEILDD--EPEKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYE 313 (604)
T ss_pred -hHHHhhcccC-CCCCeEeCcHHHHHHhHHHHcCcccccCC--CcccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEe
Confidence 9999999975 47899999999999998664433211111 134578899999999999999999999999 899999
Q ss_pred cCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201 177 KNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK 228 (240)
Q Consensus 177 ~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~ 228 (240)
+.+.. +... .....++..|+.++++..++.+++.+.+.. .||+||++++.
T Consensus 314 ~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~--~yD~vilAtGa 378 (604)
T PRK13984 314 SLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELRE--KHDAVFLSTGF 378 (604)
T ss_pred cCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCcCCHHHHHh--cCCEEEEEcCc
Confidence 88753 2111 012345778999999999988888887765 49999999764
No 20
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=100.00 E-value=7.5e-34 Score=221.69 Aligned_cols=110 Identities=37% Similarity=0.755 Sum_probs=79.4
Q ss_pred ccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCc
Q psy16201 19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDL 98 (240)
Q Consensus 19 ~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~ 98 (240)
.++|+++ ...++..+++.|++||++|.+|||+.+||+|+|||+||+++++|||++|+++++++||||++||||||++.+
T Consensus 2 ~~~f~e~-~~~~~~~~~~~ea~rC~~c~~~pC~~aCP~~~dip~~i~~i~~g~~~~A~~~i~~~np~p~vcGrvCp~p~~ 80 (111)
T PF14691_consen 2 IKNFKEV-EKGYSEEEAIEEASRCLQCEDPPCQAACPAHIDIPEYIRLIREGNFKEAYELIREDNPFPAVCGRVCPHPKQ 80 (111)
T ss_dssp ---------SS--HCCHHHHHHHS---TT-HHHHTSTT---HHHHHHHHHCT-HHHHHHHHHHH-TTHHHHHHH--GGGS
T ss_pred CcCHHHH-hcCcCHHHHHHHHhhccCCCCCCcccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCCcccccCCCCCcch
Confidence 5899998 779999999999999999999999999999999999999999999999999999999999999999999334
Q ss_pred hhhhccccccCCCccccchhhHHHHHHHHhhCC
Q psy16201 99 CMGGCNLYAAEEGPINIGGLQQFATEVFKDMGI 131 (240)
Q Consensus 99 Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~ 131 (240)
||++|+|+ .. +||+|+.|+||++|++.+.+|
T Consensus 81 Ce~~C~r~-~~-~pV~I~~l~r~~~d~~~~~~~ 111 (111)
T PF14691_consen 81 CESACRRG-KG-EPVAIRALERFIADYALEEGW 111 (111)
T ss_dssp GGGG-GGG-ST--S--HHHHHHHHHHHHHHHT-
T ss_pred HHHHccCC-CC-CCCcHHHHHHHHHHHHHHcCC
Confidence 99999998 44 899999999999999988876
No 21
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.18 E-value=7.3e-11 Score=113.46 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHH--cCCCcEEEEecCCCcc--cccc--------------chHHHhccCceEEeCCc
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSR--MGYDDITIYEKNTYDM--VTNV--------------SPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~--~G~~~V~v~e~~~~~~--~~~~--------------~~~~~~~~gv~~~~~~~ 203 (240)
...+++|+|||+||+||++|..|++ .|+ +|+|||+.+.++ +... ....+...+++|+.|+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~ 101 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVT 101 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEE
Confidence 3567899999999999999999987 799 899999998643 1110 11234567899999999
Q ss_pred cCcccCHHHHHhhcCCcEEEEecccc
Q psy16201 204 QGSFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 204 vg~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
+|+++++++|... ||+|++++...
T Consensus 102 vg~dvtl~~L~~~--yDaVIlAtGa~ 125 (491)
T PLN02852 102 LGRDVSLSELRDL--YHVVVLAYGAE 125 (491)
T ss_pred ECccccHHHHhhh--CCEEEEecCCC
Confidence 9999999999865 99999997654
No 22
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.17 E-value=8.7e-11 Score=112.54 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=66.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHH-HcCCCcEEEEecCCCcc-ccc------------cch---HHHhccCceEEeCCccC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLS-RMGYDDITIYEKNTYDM-VTN------------VSP---RIVKGTTSRHLYGPEQG 205 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~-~~G~~~V~v~e~~~~~~-~~~------------~~~---~~~~~~gv~~~~~~~vg 205 (240)
...++|+|||+||+||++|.+|+ +.|+ +|+|||+.+.++ +.. +.. ..+...+++|..|+.+|
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG 115 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG 115 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence 45689999999999999999765 6799 799999998744 111 111 12345788999999999
Q ss_pred cccCHHHHHhhcCCcEEEEecccc
Q psy16201 206 SFLNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 206 ~~i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
.++++++|.+. ||+||+++...
T Consensus 116 ~Dvt~eeL~~~--YDAVIlAtGA~ 137 (506)
T PTZ00188 116 VDLKMEELRNH--YNCVIFCCGAS 137 (506)
T ss_pred CccCHHHHHhc--CCEEEEEcCCC
Confidence 99999999875 99999997654
No 23
>KOG1800|consensus
Probab=99.09 E-value=2.6e-10 Score=105.15 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=69.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCCcc-------------ccccch---HHHhccCceEEeCCccCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTYDM-------------VTNVSP---RIVKGTTSRHLYGPEQGS 206 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~~~-------------~~~~~~---~~~~~~gv~~~~~~~vg~ 206 (240)
..+|.|||+||+|+.+|..|.++ ++ +|+|||+.+.++ +.|++. ...++...+|..|+.+|+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~-~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~ 98 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNA-HVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR 98 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCC-eeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc
Confidence 44999999999999999999885 57 899999998643 333333 344677889999999999
Q ss_pred ccCHHHHHhhcCCcEEEEeccc-chhhH
Q psy16201 207 FLNIELISEKTAYQWVYYSNCK-VLSNT 233 (240)
Q Consensus 207 ~i~~e~L~~~s~~d~V~~s~~~-~~~~l 233 (240)
++++.+|.+. ||+|++++.. -+++|
T Consensus 99 dvsl~eL~~~--ydavvLaYGa~~dR~L 124 (468)
T KOG1800|consen 99 DVSLKELTDN--YDAVVLAYGADGDRRL 124 (468)
T ss_pred cccHHHHhhc--ccEEEEEecCCCCccc
Confidence 9999999986 9999999744 45554
No 24
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.39 E-value=4.4e-07 Score=64.60 Aligned_cols=32 Identities=38% Similarity=0.697 Sum_probs=29.1
Q ss_pred EECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 150 LIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 150 ViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
|||+|++||++|+.|++.|+ +|+|||+.+..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcccC
Confidence 89999999999999999999 899999998754
No 25
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.36 E-value=7.1e-07 Score=77.56 Aligned_cols=36 Identities=25% Similarity=0.703 Sum_probs=33.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+||+||+||++|+++|. +|.|||++..
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls 64 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLS 64 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecc
Confidence 35699999999999999999999999 8999999875
No 26
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.30 E-value=8.7e-07 Score=84.81 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=40.2
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Cccccccch
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDMVTNVSP 188 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~~~~~~~ 188 (240)
+...++|+|||+|++||++|.+|++.|+ +|+|||++. .||.|++.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~~vGG~W~~~~ 53 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREKQVGGLWVYTP 53 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCCCCcceeecCC
Confidence 3457899999999999999999999999 899999987 578887643
No 27
>PLN02487 zeta-carotene desaturase
Probab=98.28 E-value=1.4e-06 Score=85.54 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHhh--CCCcCCCCCCCCCCC--CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 117 GLQQFATEVFKDM--GISQIRPPDAKVDFP--DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 117 ~l~r~~~~~~~~~--~~~~~~~p~~~~~~~--~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
.||||++|+.... ++.+ | .+...+ .++|+|||+|++||++|+.|++.|+ +|+|||+.+..
T Consensus 47 ~l~r~~~d~~~~~~~~~~~---~-~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~~ 110 (569)
T PLN02487 47 SLDSNVSDMSVNAPKGLFP---P-EPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPFI 110 (569)
T ss_pred HHHHHhhhhhccccccccC---C-CCcccCCCCCeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCCC
Confidence 7999999987654 3322 2 122333 3599999999999999999999999 89999998753
No 28
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.28 E-value=1.8e-06 Score=62.65 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=47.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
+|+|||+|+.|+.+|..|++.|. +|+++++.+... ......+.+++.|+++.++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 68999999999999999999999 899999998654 1223345677889999998854
No 29
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.22 E-value=7.6e-06 Score=75.10 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=57.6
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-ccc------c--------chHHHhccCceEEeCCccCc-
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-VTN------V--------SPRIVKGTTSRHLYGPEQGS- 206 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-~~~------~--------~~~~~~~~gv~~~~~~~vg~- 206 (240)
..+++|+|||+|++|+++|..|++.|+ +|++||+.+..+ ... . ....+...++++.++..+-.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 457899999999999999999999999 799999987532 211 0 11233455888887765411
Q ss_pred --------------ccCHHHHHhhcCCcEEEEeccc
Q psy16201 207 --------------FLNIELISEKTAYQWVYYSNCK 228 (240)
Q Consensus 207 --------------~i~~e~L~~~s~~d~V~~s~~~ 228 (240)
....+.... .||.|++++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~--~~d~lviAtGs 128 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVK--KYDAVLIATGT 128 (352)
T ss_pred cccccccccccccccCCHHHHHh--hCCEEEEEeCC
Confidence 112332222 49999999765
No 30
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.21 E-value=2.1e-06 Score=74.48 Aligned_cols=35 Identities=29% Similarity=0.692 Sum_probs=30.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+||++|++|++.|+ +|.|||++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCC-eEEEEecCCC
Confidence 5699999999999999999999999 8999999875
No 31
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.17 E-value=2.1e-06 Score=80.27 Aligned_cols=36 Identities=39% Similarity=0.441 Sum_probs=32.5
Q ss_pred CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~ 182 (240)
++|+|||+|++||+||+.|++.| + +|+|||++++.|
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCCCc
Confidence 47999999999999999999988 8 799999988643
No 32
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=2.1e-06 Score=82.22 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.6
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
+||+|+|+|.+||++|+.|+..|+ +|||||++++.|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCccC
Confidence 589999999999999999999999 799999999744
No 33
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.14 E-value=2.4e-06 Score=82.21 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=35.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~ 183 (240)
.++|+|||+|+.||++|.+|+++|+ +|+|+||+..+|.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~~GG 40 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGG 40 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCC-EEEEEEecCCCCc
Confidence 5689999999999999999999999 8999999987653
No 34
>KOG0029|consensus
Probab=98.13 E-value=3e-06 Score=81.94 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=36.1
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
....++|+|||+|++||+||.+|.+.|+ +|+|+|++++.|
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCCcC
Confidence 3567799999999999999999999999 799999998744
No 35
>KOG1399|consensus
Probab=98.11 E-value=2.9e-06 Score=80.93 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=38.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccccc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTNVS 187 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~~~ 187 (240)
..++|+|||+|+|||++|..|.+.|+ +|++|||.+. ||+|.+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCC-CceEEEecCCccceEeec
Confidence 46799999999999999999999999 7999999874 7888855
No 36
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.08 E-value=4e-06 Score=81.66 Aligned_cols=39 Identities=31% Similarity=0.524 Sum_probs=32.6
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTN 185 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~ 185 (240)
|+|+|||+|++||+++..|.+.|+ ++++||+++. ||+|.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCCCCCccCe
Confidence 799999999999999999999999 8999999874 88886
No 37
>PRK07233 hypothetical protein; Provisional
Probab=98.07 E-value=4.2e-06 Score=77.66 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=32.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
+|+|||+|++||++|++|++.|+ +|+|+|+++..|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCC
Confidence 68999999999999999999999 899999998644
No 38
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.07 E-value=4e-06 Score=74.73 Aligned_cols=34 Identities=41% Similarity=0.696 Sum_probs=29.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+||+|+++|..|+++|+ +|+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence 379999999999999999999999 8999999874
No 39
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=7.2e-06 Score=76.17 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
....+|+|||+||+|+++|..|++.|+ +|+|+|+.+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 345799999999999999999999999 8999999864
No 40
>PLN02576 protoporphyrinogen oxidase
Probab=98.01 E-value=7.8e-06 Score=78.00 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=34.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~ 182 (240)
....+|+|||+|++||++|++|.++ |+ +|+|+|++++.|
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCCCC
Confidence 3456899999999999999999999 99 799999998644
No 41
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.98 E-value=1.2e-05 Score=74.16 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=32.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|++||++|..|++.|+ +|+|||+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCcc
Confidence 4689999999999999999999999 7999999874
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.97 E-value=9.5e-06 Score=75.76 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=34.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|++||+.|++.|+ +|.|+|+...++
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~~G 39 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPG 39 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCC-eEEEEecCCCCC
Confidence 4689999999999999999999999 899999988655
No 43
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.96 E-value=1.2e-05 Score=76.92 Aligned_cols=36 Identities=33% Similarity=0.612 Sum_probs=33.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
++|+|||+|++||++|..|+++|+ +|+|+|++...|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCC
Confidence 589999999999999999999999 899999998644
No 44
>PLN02268 probable polyamine oxidase
Probab=97.96 E-value=9.3e-06 Score=76.24 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
.+|+|||+|.+||++|+.|.+.|+ +|+|+|++++.|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCC
Confidence 379999999999999999999999 799999998644
No 45
>PRK07045 putative monooxygenase; Reviewed
Probab=97.96 E-value=1.3e-05 Score=74.02 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=32.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+||++|..|+++|+ +|+|||+.+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGH-SVTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCc
Confidence 4589999999999999999999999 8999999874
No 46
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.95 E-value=9.7e-06 Score=76.43 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=33.1
Q ss_pred CeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~~ 182 (240)
++|+|||+|++||++|+.|.++ |+ +|+|+|++++.|
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCcCc
Confidence 5899999999999999999999 99 899999998644
No 47
>PRK06847 hypothetical protein; Provisional
Probab=97.94 E-value=1.2e-05 Score=73.62 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.++|+|||+||+||++|..|++.|+ +|+|||+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence 5689999999999999999999999 8999998863
No 48
>PRK07208 hypothetical protein; Provisional
Probab=97.94 E-value=1.3e-05 Score=76.27 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=34.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..++|+|||+|++||++|+.|+++|+ +|+|+|+.+..|
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Confidence 35689999999999999999999999 799999988633
No 49
>PRK06753 hypothetical protein; Provisional
Probab=97.93 E-value=1.1e-05 Score=73.83 Aligned_cols=34 Identities=38% Similarity=0.682 Sum_probs=31.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+||+||++|..|+++|+ +|+|||+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence 379999999999999999999999 7999999874
No 50
>PRK07236 hypothetical protein; Provisional
Probab=97.92 E-value=1.3e-05 Score=74.15 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=32.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|++||++|..|++.|+ +|+|||+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 5799999999999999999999999 799999986
No 51
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.91 E-value=1.3e-05 Score=74.58 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.++|+|||+|++||++|..|+++|+ +|+|||+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence 3789999999999999999999999 7999999863
No 52
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.90 E-value=1.3e-05 Score=76.71 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.7
Q ss_pred EEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
|+|||+|.+||++|.+|++.|+ +|+|+|+++..|
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCCCc
Confidence 6899999999999999999999 899999998744
No 53
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.89 E-value=2.4e-05 Score=69.38 Aligned_cols=35 Identities=23% Similarity=0.661 Sum_probs=32.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+||++|+.|++.|+ +|+|+||...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~ 55 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLA 55 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 5689999999999999999999999 8999999875
No 54
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.89 E-value=1.2e-05 Score=73.38 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=31.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+||+|+++|+.|+++|+ +|+|||+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 58999999999999999999999 8999999874
No 55
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.88 E-value=2.6e-05 Score=69.19 Aligned_cols=35 Identities=26% Similarity=0.752 Sum_probs=32.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|+.|++.|+ +|+|+|+...
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 5689999999999999999999999 8999999864
No 56
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.87 E-value=1.6e-05 Score=75.83 Aligned_cols=36 Identities=39% Similarity=0.522 Sum_probs=32.5
Q ss_pred CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~ 182 (240)
++|+|||+|++||++|+.|++.+ + +|+|||+.++.|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCCCC
Confidence 47999999999999999999999 8 799999987533
No 57
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.87 E-value=2.4e-05 Score=72.59 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=30.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
.+|+|||+||+|+++|+.|++.|+ +|+++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 379999999999999999999999 79999997
No 58
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.86 E-value=2e-05 Score=70.36 Aligned_cols=32 Identities=38% Similarity=0.571 Sum_probs=30.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|++|+++|++|++.|+ +|+|+|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecc
Confidence 58999999999999999999999 899999985
No 59
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.86 E-value=1.7e-05 Score=75.17 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=31.6
Q ss_pred CeEEEECCChhHHHHHHHHHHc------CCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRM------GYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~------G~~~V~v~e~~~~~~ 182 (240)
++|+|||+|++||++|+.|.+. |+ +|+|+|++++.|
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r~G 43 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEYLG 43 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCCcc
Confidence 4799999999999999999986 37 799999998644
No 60
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.86 E-value=2.7e-05 Score=76.24 Aligned_cols=39 Identities=41% Similarity=0.482 Sum_probs=34.6
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~~ 182 (240)
...++|+|||+|++||++|.+|.+. |+ +|+|||+.+..|
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~~G 62 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDVPG 62 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCCCC
Confidence 4568999999999999999999995 68 899999998744
No 61
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.85 E-value=2e-05 Score=69.22 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=31.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
.+|+|||+|++||++|..|+++|+ +|+|+|+.+.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~g 35 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL-KTLIIEGMEPG 35 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCC
Confidence 379999999999999999999999 79999987643
No 62
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.85 E-value=1.7e-05 Score=73.67 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=31.2
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|+|||+||+|+++|..|+++|+ +|+|+|+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 479999999999999999999999 899999876
No 63
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.85 E-value=1.6e-05 Score=75.06 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=27.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
.+|+|||+|++||.||+.|++.|+ +|+|+|+++..+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~g 36 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVG 36 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccc
Confidence 379999999999999999999999 899999998543
No 64
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.84 E-value=1.8e-05 Score=66.01 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=28.8
Q ss_pred EEECCChhHHHHHHHHHHcCCCc-EEEEecCCC-cccccc
Q psy16201 149 ALIGCGPASLSCATFLSRMGYDD-ITIYEKNTY-DMVTNV 186 (240)
Q Consensus 149 aViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~-~~~~~~ 186 (240)
+|||+||+||++|..|.++|. + |+|+|++.. |+.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~-~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGI-DPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT----EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCC-CcEEEEeCCCCCCCeeEE
Confidence 699999999999999999999 6 999999954 666663
No 65
>PRK07588 hypothetical protein; Provisional
Probab=97.84 E-value=1.9e-05 Score=72.99 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=31.5
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+||+||++|..|++.|+ +|+|||+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCC
Confidence 379999999999999999999999 7999998864
No 66
>PRK09126 hypothetical protein; Provisional
Probab=97.83 E-value=1.9e-05 Score=72.83 Aligned_cols=35 Identities=34% Similarity=0.619 Sum_probs=32.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence 3589999999999999999999999 8999999864
No 67
>KOG1276|consensus
Probab=97.83 E-value=2.4e-05 Score=73.72 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=50.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCccccccch----HHHhccCceEEeCCccCcccCHHHHHhhc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDMVTNVSP----RIVKGTTSRHLYGPEQGSFLNIELISEKT 217 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~~~~~~~----~~~~~~gv~~~~~~~vg~~i~~e~L~~~s 217 (240)
..+.+|||+|+|++||++||+|++++-+ .|++||+.++.|.|-.+- -++=+.|.+.......+.-.+++.+.+-
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL- 87 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL- 87 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-
Confidence 4578999999999999999999999873 356699999877666441 1112234333333433333456655543
Q ss_pred CCc
Q psy16201 218 AYQ 220 (240)
Q Consensus 218 ~~d 220 (240)
+-+
T Consensus 88 Gl~ 90 (491)
T KOG1276|consen 88 GLE 90 (491)
T ss_pred Ccc
Confidence 443
No 68
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.83 E-value=2.3e-05 Score=68.53 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=31.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|++|+++|..|+++|+ +|+|+|+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 69999999999999999999999 8999999864
No 69
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.82 E-value=2.1e-05 Score=74.24 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=31.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
+|+|||+|++||++|+.|.++|+ +|+|+|+.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCC
Confidence 58999999999999999999999 79999998753
No 70
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.81 E-value=2.3e-05 Score=72.92 Aligned_cols=35 Identities=34% Similarity=0.637 Sum_probs=32.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence 3589999999999999999999999 7999999874
No 71
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.81 E-value=2.6e-05 Score=73.66 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|+.|+++|+ +|+|+||...++
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCCCCC
Confidence 4699999999999999999999999 899999987543
No 72
>PRK10015 oxidoreductase; Provisional
Probab=97.80 E-value=2.8e-05 Score=73.65 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=33.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|+.|++.|+ +|+|+|+.+.++
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGL-DVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence 4689999999999999999999999 799999987644
No 73
>PRK06184 hypothetical protein; Provisional
Probab=97.79 E-value=3.2e-05 Score=74.27 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=32.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 4689999999999999999999999 8999999864
No 74
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.79 E-value=3.6e-05 Score=71.86 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=30.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~ 180 (240)
.+|+|||+|++||++|..|+++| + +|+|||+.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~-~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHL-NVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC-CEEEEecCCc
Confidence 37999999999999999999998 7 7999999864
No 75
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.79 E-value=2.2e-05 Score=72.02 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=30.8
Q ss_pred eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~ 180 (240)
+|+|||+||+|+++|..|+++| + +|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCCc
Confidence 5899999999999999999999 9 8999999864
No 76
>PRK05868 hypothetical protein; Validated
Probab=97.79 E-value=2.6e-05 Score=72.21 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|++|+++|..|+++|+ +|+|||+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Confidence 489999999999999999999999 7999999864
No 77
>PRK07538 hypothetical protein; Provisional
Probab=97.78 E-value=2.6e-05 Score=72.83 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.5
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+||+||++|..|+++|+ +|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCCc
Confidence 379999999999999999999999 7999999863
No 78
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.78 E-value=2.7e-05 Score=72.07 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+||+|+++|+.|+++|+ +|+|+|+.+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGL-SVALVEGREP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCCC
Confidence 45689999999999999999999999 7999999763
No 79
>PRK08244 hypothetical protein; Provisional
Probab=97.78 E-value=3.4e-05 Score=73.87 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+||+||++|..|+++|+ +|+|+|+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGV-KTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 589999999999999999999999 8999999864
No 80
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.76 E-value=3e-05 Score=71.29 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|..|++.|+ +|+|+|+...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 4589999999999999999999999 8999999865
No 81
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.76 E-value=2.9e-05 Score=71.86 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=31.0
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|+|||+||+|+++|..|++.|+ +|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 589999999999999999999999 899999874
No 82
>PRK08013 oxidoreductase; Provisional
Probab=97.76 E-value=3e-05 Score=72.27 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=32.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCC
Confidence 3689999999999999999999999 8999999864
No 83
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.75 E-value=3.9e-05 Score=73.25 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
....+|+|||+||+|+++|..|+++|+ +|+++|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGI-ETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 445799999999999999999999999 799999875
No 84
>PRK10262 thioredoxin reductase; Provisional
Probab=97.75 E-value=3.5e-05 Score=69.58 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
..++|+|||+||+||++|..|+++|+ +++++|+...+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~~~~g 41 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKG 41 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-CeEEEEeecCC
Confidence 46789999999999999999999999 79999965544
No 85
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.75 E-value=3.4e-05 Score=71.64 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=32.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCc
Confidence 3589999999999999999999999 7999999863
No 86
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.74 E-value=4e-05 Score=70.11 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
...+|+|||+|++|+++|++|+++|+ +|+++|+...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccC
Confidence 46799999999999999999999999 89999988753
No 87
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.72 E-value=3.7e-05 Score=70.87 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=32.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCC
Confidence 4589999999999999999999999 8999999863
No 88
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.71 E-value=4.7e-05 Score=74.38 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+||++|.+|+++|+ +|+|+|+...+|
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~-~V~liE~~~~GG 40 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKDDFGG 40 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCc
Confidence 4689999999999999999999999 899999977554
No 89
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.71 E-value=3.9e-05 Score=71.28 Aligned_cols=33 Identities=39% Similarity=0.696 Sum_probs=31.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
..+|+|||+||+||++|..|++.|+ +|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence 4689999999999999999999999 89999998
No 90
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.70 E-value=4.1e-05 Score=71.67 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+||+|+++|+.|+++|+ +|+|+|+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 79999999999999999999999 899999875
No 91
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.69 E-value=3.9e-05 Score=70.58 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=30.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM---GYDDITIYEKN 178 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~ 178 (240)
..+|+|||+||+|+++|+.|+++ |+ +|+|||+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence 45899999999999999999998 99 89999995
No 92
>PRK06126 hypothetical protein; Provisional
Probab=97.68 E-value=5e-05 Score=73.59 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=32.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+||+||++|..|+++|+ +|+|+|+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGV-DSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 35689999999999999999999999 8999998863
No 93
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.68 E-value=0.00011 Score=70.32 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
..+++|+|||+|++|+++|..|+++|+ +|+++|+.+...... ..+.++..|+.+.++.... +.. .+|.|
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~-~~~~l~~~gv~~~~~~~~~-------~~~--~~D~V 82 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRA-LAAILEALGATVRLGPGPT-------LPE--DTDLV 82 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHH-HHHHHHHcCCEEEECCCcc-------ccC--CCCEE
Confidence 457799999999999999999999999 799999776432111 2345677899998876431 111 38889
Q ss_pred EEec
Q psy16201 223 YYSN 226 (240)
Q Consensus 223 ~~s~ 226 (240)
++|.
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 8885
No 94
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.68 E-value=7e-05 Score=72.74 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=33.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 45689999999999999999999999 7999999873
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.68 E-value=5.2e-05 Score=70.95 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=33.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
..+|+|||+||+||.||..+++.|+ +|+|||+.+..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~-~V~lid~~~k~ 38 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKGPKL 38 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCC-EEEEEecCccc
Confidence 4689999999999999999999999 89999998853
No 96
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.68 E-value=5.8e-05 Score=71.94 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=37.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCC-cccccc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTY-DMVTNV 186 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~-~~~~~~ 186 (240)
....+|+|||+|++||++|+.|.+.|. . ++||||+.. |+.|+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~-~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGV-PDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCC-CcEEEEEccCCcCCcchh
Confidence 457799999999999999999999999 6 999999964 666663
No 97
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.68 E-value=5.1e-05 Score=69.49 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|++|+++|++|+++|+ +|+|+|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 79999999999999999999999 8999999753
No 98
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.67 E-value=5e-05 Score=72.86 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=32.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
+|+|||+|.+||++|.+|+++|+ +|+|+||+..+|
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~G 36 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGA-KVLVLERYLIPG 36 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCC
Confidence 69999999999999999999999 899999998754
No 99
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.67 E-value=5.2e-05 Score=70.56 Aligned_cols=33 Identities=30% Similarity=0.685 Sum_probs=31.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|+|||+|.+|+++|++|++.|+ +|+|+|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999999 899999986
No 100
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.66 E-value=6e-05 Score=62.55 Aligned_cols=32 Identities=44% Similarity=0.638 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|++|+++|..|++.|+ +|+++|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 68999999999999999999999 899999876
No 101
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.66 E-value=4.5e-05 Score=70.34 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=31.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+||+|+++|..|++.|+ +|+|+|+..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 4689999999999999999999999 899999875
No 102
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.65 E-value=0.00015 Score=68.78 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=52.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEec
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSN 226 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~ 226 (240)
+|+|||.|++|+++|..|+++|+ +|+++|+........ ....++..|+++.++...... .++.+.. .+|.|++|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~~~~~-~~~~l~~~gi~~~~g~~~~~~-~~~~~~~--~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSPELLE-RQQELEQEGITVKLGKPLELE-SFQPWLD--QPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCchhhHH-HHHHHHHcCCEEEECCccchh-hhhHHhh--cCCEEEECC
Confidence 69999999999999999999999 899999887654211 113456679998876632110 1112222 489999985
No 103
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.65 E-value=5.8e-05 Score=71.81 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|..|++.|+ +|+|+|+...||
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~~~GG 38 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA-KALLVEAKKLGG 38 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-cEEEeccccccc
Confidence 4689999999999999999999999 899999976555
No 104
>PRK06185 hypothetical protein; Provisional
Probab=97.65 E-value=6.1e-05 Score=69.87 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=32.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
...+|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 35689999999999999999999999 899999875
No 105
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.64 E-value=5e-05 Score=70.12 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=30.1
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
.+|+|||+||+|+++|..|++.|+ +|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI-KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC-eEEEecCC
Confidence 379999999999999999999999 89999986
No 106
>PRK06370 mercuric reductase; Validated
Probab=97.64 E-value=6.6e-05 Score=71.41 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|..|++.|+ +|+++|+...||
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~GG 41 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGM-KVALIERGLLGG 41 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCccCC
Confidence 4799999999999999999999999 899999876544
No 107
>PRK14694 putative mercuric reductase; Provisional
Probab=97.64 E-value=7e-05 Score=71.42 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
....+|+|||+||+|+++|..|++.|. +|+|+|+...||
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~~~GG 42 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGA-RVTLIERGTIGG 42 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcccccc
Confidence 356799999999999999999999999 899999876554
No 108
>PRK06116 glutathione reductase; Validated
Probab=97.63 E-value=6.3e-05 Score=71.21 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+...||
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~-~V~liE~~~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGA-KVALIEAKRLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccchhh
Confidence 4689999999999999999999999 899999875544
No 109
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=6.9e-05 Score=71.11 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=34.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...+|+|||+||+|+++|..|++.|+ +|.++|+...||
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~~GG 40 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEKLGG 40 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC-cEEEEecccccc
Confidence 35689999999999999999999999 899999987555
No 110
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.62 E-value=6.4e-05 Score=67.37 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=31.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|++||+||+.|+..|+ +|+||||..-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCC
Confidence 69999999999999999999999 7999999863
No 111
>PLN02612 phytoene desaturase
Probab=97.62 E-value=8.1e-05 Score=73.03 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=34.5
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+...++|+|||+|++||++|++|+++|+ +|+|+|+.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~ 127 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDV 127 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 3456899999999999999999999999 7999999875
No 112
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.61 E-value=6.5e-05 Score=75.00 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+..+|+|||+|++||++|..|+++|+ +|+|||+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 456789999999999999999999999 899999975
No 113
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.61 E-value=7.3e-05 Score=68.32 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|++|+++|++|+++|+ +|+|+|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 3579999999999999999999999 8999999764
No 114
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.61 E-value=6.1e-05 Score=70.13 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
..+|+|||+||+|+++|..|++.|+ +|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 4589999999999999999999999 89999986
No 115
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.61 E-value=7.2e-05 Score=70.94 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=33.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|..++++|+ +|+++|+...||
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~GG 38 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA-KVAIAEEPRVGG 38 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCccCc
Confidence 4689999999999999999999999 899999865554
No 116
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.60 E-value=9.6e-05 Score=71.71 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
....+|+|||+||+||++|..|++.|+ +|+|+|+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 446799999999999999999999999 8999999864
No 117
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.59 E-value=7.3e-05 Score=71.69 Aligned_cols=34 Identities=38% Similarity=0.626 Sum_probs=31.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
+|+|||+|++||++|+.|++.|+ +|+|||+++..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCC
Confidence 58999999999999999999999 79999998863
No 118
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=9e-05 Score=70.71 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=34.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...+|+|||+||+|+++|..|++.|+ +|+++|+...||
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~GG 40 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKGKLGG 40 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCCCc
Confidence 35799999999999999999999999 899999876555
No 119
>PLN02529 lysine-specific histone demethylase 1
Probab=97.58 E-value=9.2e-05 Score=74.74 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=35.1
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...++|+|||+|++||++|..|+++|+ +|+|+|+++..|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCccCc
Confidence 456799999999999999999999999 799999988633
No 120
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.58 E-value=9e-05 Score=67.74 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=30.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|++|+++|+.|++.|+ +|+|+|+...
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~ 34 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSR 34 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence 69999999999999999999999 7999998763
No 121
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.57 E-value=6.9e-05 Score=69.23 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~ 180 (240)
.+|+|||+||+||++|..|++.| + +|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCCc
Confidence 47999999999999999999996 9 8999999753
No 122
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.57 E-value=8.8e-05 Score=70.49 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=33.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~ 183 (240)
.+|+|||+||+|+++|..|++.|+ +|+++|+...||.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~-~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA-SVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCcccCC
Confidence 379999999999999999999999 8999999876653
No 123
>PLN02568 polyamine oxidase
Probab=97.56 E-value=0.0001 Score=71.99 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC-----CCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG-----YDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G-----~~~V~v~e~~~~~~ 182 (240)
..+|+|||+|++||++|..|++.| + +|+|||++...|
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~-~v~v~E~~~~~G 46 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMF-ELTVVEGGDRIG 46 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCc-eEEEEeCCCCcC
Confidence 468999999999999999999887 8 799999988644
No 124
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.53 E-value=0.00011 Score=69.70 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Ccc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~ 182 (240)
..+|+|||+||+|+++|..|++.|+ +|+++|+.+ .||
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~~~~GG 42 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERYRNVGG 42 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccccc
Confidence 4689999999999999999999999 899999964 454
No 125
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.52 E-value=9.3e-05 Score=68.19 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+||+|+++|+.|++.|+ +|+|+|+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~-~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL-RVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCC
Confidence 58999999999999999999999 8999998763
No 126
>PLN02463 lycopene beta cyclase
Probab=97.52 E-value=0.00012 Score=69.95 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=32.7
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
....+|+|||+||+|+++|..|++.|+ +|.|+|+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence 445699999999999999999999999 899999875
No 127
>PRK06834 hypothetical protein; Provisional
Probab=97.52 E-value=0.00012 Score=70.64 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~-~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGV-DVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 4689999999999999999999999 8999998763
No 128
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.52 E-value=0.00011 Score=69.93 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCc
Confidence 589999999999999999999999 7999997653
No 129
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.51 E-value=0.00011 Score=69.31 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+||+|+++|..|++.|+ +|+|+|+..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence 4689999999999999999999999 899999975
No 130
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.51 E-value=0.00013 Score=74.21 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...++|+|||+|++||++|+.|+++|+ +|+|+|++...|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccccCC
Confidence 456789999999999999999999999 799999988643
No 131
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.50 E-value=0.00013 Score=72.57 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|++|+++|+.|+++|+ +|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 3589999999999999999999999 799999974
No 132
>PRK07190 hypothetical protein; Provisional
Probab=97.49 E-value=0.00014 Score=70.04 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=32.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+||+||++|..|+++|+ +|+|+|+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCCc
Confidence 4689999999999999999999999 7999999874
No 133
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.49 E-value=0.00013 Score=68.88 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+||+|+++|..|+++|+ +|+|+|+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCC
Confidence 4689999999999999999999999 899999874
No 134
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.48 E-value=0.0002 Score=69.39 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
...++|+|||+||+|+++|.+|++.|+ +|+|++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEec
Confidence 345799999999999999999999999 8999985
No 135
>PRK11445 putative oxidoreductase; Provisional
Probab=97.48 E-value=0.00012 Score=67.22 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=30.0
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|+|||+||+|+++|..|++. + +|+|+|+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-M-KVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-C-CEEEEECCC
Confidence 4799999999999999999999 9 899999876
No 136
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.48 E-value=0.00013 Score=69.85 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=35.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
.-.++++|||+|++|+++|..|+..|+ +|.++|+++..|
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiG 160 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIG 160 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCccc
Confidence 446899999999999999999999999 799999999744
No 137
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.48 E-value=0.00013 Score=69.02 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=32.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
.+|+|||+||+|+++|..|++.|+ +|+|+|+...||
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~~~~GG 37 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGL-KVALVEKEYLGG 37 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence 479999999999999999999999 899999954454
No 138
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.48 E-value=0.00014 Score=68.91 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=34.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT 184 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~ 184 (240)
..+|+|||+||+|+++|..|++.|. +|.|+|+...||.+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~GG~~ 41 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGPLGGTC 41 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCccccce
Confidence 3689999999999999999999999 89999996555533
No 139
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.47 E-value=0.00013 Score=67.67 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=31.0
Q ss_pred CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~ 179 (240)
.+|+|||+|++|+++|+.|+++ |+ +|+|+|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 4899999999999999999999 99 899999975
No 140
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.47 E-value=0.00014 Score=68.11 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=32.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
.+|+|||+|++|+++|..|++.|. +|+|+|+.+..|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence 379999999999999999999999 899999977543
No 141
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.47 E-value=0.00014 Score=69.23 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|+++|..|++.|+ +|+++|+...||
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~~~GG 40 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKKYWGG 40 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence 3689999999999999999999999 899999875544
No 142
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.46 E-value=0.00023 Score=68.84 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=31.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
....+|+|||+||+||++|.+|++.|+ +|+|++..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI-RTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 345799999999999999999999999 79999864
No 143
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.46 E-value=0.00012 Score=69.09 Aligned_cols=32 Identities=19% Similarity=0.436 Sum_probs=29.7
Q ss_pred eEEEECCChhHHHHHHHHHH----cCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSR----MGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~----~G~~~V~v~e~~~ 179 (240)
+|+|||+||+|+++|..|++ .|+ +|+|+|+.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeCCC
Confidence 69999999999999999998 799 899999943
No 144
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.46 E-value=0.00017 Score=71.67 Aligned_cols=36 Identities=31% Similarity=0.572 Sum_probs=32.5
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~ 180 (240)
...+|+|||+||+||++|..|++. |+ +|+|+|+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence 467899999999999999999995 99 7999999863
No 145
>KOG0685|consensus
Probab=97.45 E-value=0.00018 Score=68.63 Aligned_cols=40 Identities=35% Similarity=0.391 Sum_probs=35.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+.+|+|||+|.|||+||..|.+.|+.+|+|||..++-|
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 3456999999999999999999988877999999998733
No 146
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.45 E-value=0.00015 Score=67.32 Aligned_cols=32 Identities=19% Similarity=0.586 Sum_probs=30.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|.+|+++|++|+++|+ +|+|+|+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 79999999999999999999999 899999974
No 147
>PLN02985 squalene monooxygenase
Probab=97.43 E-value=0.00018 Score=69.85 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
....+|+|||+|++|+++|..|++.|+ +|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 445689999999999999999999999 899999975
No 148
>PRK13748 putative mercuric reductase; Provisional
Probab=97.43 E-value=0.00017 Score=70.05 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...+|+|||+||+|+++|..|++.|. +|.|+|+...||
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~~~GG 134 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA-RVTLIERGTIGG 134 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCccee
Confidence 35799999999999999999999999 899999886555
No 149
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0002 Score=68.02 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=35.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+.+|+|||+|.+||++|+.|.+.|| +|+|+|.+++.|
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCCcC
Confidence 567899999999999999999999999 899999988644
No 150
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.41 E-value=0.00026 Score=67.41 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=32.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
...+|+|||+|++|+++|++|+++ |. +|+|+|+...
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCcc
Confidence 346899999999999999999998 89 8999998763
No 151
>KOG2614|consensus
Probab=97.40 E-value=0.00018 Score=67.53 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||||++||++|..|+|+|+ +|+|||+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI-DVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecc
Confidence 3589999999999999999999999 899999865
No 152
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00021 Score=65.05 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=31.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTYD 181 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~~ 181 (240)
..+|+|||+||+||+||.++.|.|. + +.|+|+...+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l-~~~li~~~~~~g 39 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGL-KVVLILEGGEPG 39 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCC-CcEEEEecCCcC
Confidence 4689999999999999999999998 6 8888876444
No 153
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.39 E-value=0.00021 Score=67.67 Aligned_cols=34 Identities=26% Similarity=0.520 Sum_probs=28.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
+|+|||+|++|++||+.+++.|. +|.++|+....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCC-EEEEEECCccC
Confidence 58999999999999999999999 89999998853
No 154
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.38 E-value=0.0002 Score=68.40 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=32.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~~~ 182 (240)
..+|+|||+||+|+++|..++++|+ +|+++|+. ..||
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~~~~GG 40 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGL-KVACVEGRSTLGG 40 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCceee
Confidence 3689999999999999999999999 89999974 3444
No 155
>PTZ00367 squalene epoxidase; Provisional
Probab=97.36 E-value=0.00021 Score=70.21 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
....+|+|||+|++|+++|..|++.|+ +|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 346799999999999999999999999 899999975
No 156
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.35 E-value=0.00018 Score=66.61 Aligned_cols=35 Identities=46% Similarity=0.675 Sum_probs=30.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|++||+||+.|+++ + +||+||....
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-h-dVTLfEA~~r 41 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-H-DVTLFEADRR 41 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-c-ceEEEecccc
Confidence 467999999999999999998654 5 6999999875
No 157
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.35 E-value=0.00024 Score=67.56 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=32.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
+|+|||+||+|+++|..|++.|. +|+++|+...||
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~~~GG 36 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEADLGG 36 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECCcccc
Confidence 79999999999999999999999 799999987654
No 158
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.34 E-value=0.0003 Score=65.37 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=32.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~ 179 (240)
....+|+|||+|++|+++|++|+++ |..+|+|+|+..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 4567999999999999999999985 842799999975
No 159
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.32 E-value=0.00025 Score=67.51 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=30.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|++|+++|+.|+++|+ +|+|||+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-cEEEEecccc
Confidence 79999999999999999999999 8999997543
No 160
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.32 E-value=0.00023 Score=72.19 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=31.3
Q ss_pred CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
.+|+|||+||+||++|..|++. |+ +|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence 3799999999999999999998 89 8999999874
No 161
>PLN02676 polyamine oxidase
Probab=97.30 E-value=0.00033 Score=67.57 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=34.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
....+|+|||+|++||++|+.|++.|+.+|+|+|+++..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 346689999999999999999999997249999998863
No 162
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.29 E-value=0.00033 Score=66.57 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=32.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|++||++|+.|++.|. +|+|+||..
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~-~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGA-SVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 4689999999999999999999999 899999986
No 163
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.29 E-value=0.00037 Score=66.73 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Ccc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~ 182 (240)
..+|+|||+||+|+++|..|++.|+ +|+++|+.+ .||
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~~GG 41 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGL-ETVCVERYSTLGG 41 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCcccc
Confidence 4799999999999999999999999 899999874 444
No 164
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.28 E-value=0.00081 Score=63.54 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=52.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
.+++|+|+|+|.+|+++|..|++.|+ +|+++|+.....+.. ....+...++.+..+.. ..+ +.. .+|.||
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~~l~~~~~~~~~~~~-----~~~-~~~--~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKE-ALEELGELGIELVLGEY-----PEE-FLE--GVDLVV 73 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHH-HHHHHHhcCCEEEeCCc-----chh-Hhh--cCCEEE
Confidence 47899999999999999999999999 899999875332211 11234556777665542 212 222 489999
Q ss_pred Eecc
Q psy16201 224 YSNC 227 (240)
Q Consensus 224 ~s~~ 227 (240)
.+..
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9854
No 165
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.27 E-value=0.00032 Score=65.31 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|.+||+||+.++++|. +|+|+||...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~-~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGA-KVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT--EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcC-eEEEEEeecc
Confidence 58999999999999999999999 8999999986
No 166
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.00099 Score=63.54 Aligned_cols=73 Identities=16% Similarity=0.432 Sum_probs=53.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
.+++|.|+|.|.+|+++|..|.++|+ .|+++|.......... ...++..|+.+..+.. ..+.+. .+|.|+
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~-~~~l~~~gi~~~~~~~-----~~~~~~---~~dlVV 82 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEV-SNELKELGVKLVLGEN-----YLDKLD---GFDVIF 82 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHH-HHHHHhCCCEEEeCCC-----ChHHhc---cCCEEE
Confidence 36799999999999999999999999 7999998764321111 1235667888876542 234443 489999
Q ss_pred Eec
Q psy16201 224 YSN 226 (240)
Q Consensus 224 ~s~ 226 (240)
.|.
T Consensus 83 ~Sp 85 (458)
T PRK01710 83 KTP 85 (458)
T ss_pred ECC
Confidence 984
No 167
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.26 E-value=0.00042 Score=66.86 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|+.|+++|+.|+++|+ +|.++|+.+.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d~ 40 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGL-KVLLCEKDDL 40 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence 34689999999999999999999999 8999999874
No 168
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.25 E-value=0.00069 Score=63.78 Aligned_cols=34 Identities=38% Similarity=0.568 Sum_probs=30.4
Q ss_pred CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~ 180 (240)
++|+|||+|++|+++|..|++.| + +|+|+|+++.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~-~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKEL-EITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCC-cEEEEECCCc
Confidence 47999999999999999999875 5 7999999874
No 169
>PLN03000 amine oxidase
Probab=97.25 E-value=0.00055 Score=70.12 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=35.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...++|+|||+|++||++|+.|.+.|+ +|+|+|+.+..|
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCcCC
Confidence 356899999999999999999999999 799999988754
No 170
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.23 E-value=0.00036 Score=72.65 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=32.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.++|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~ 197 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPE 197 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 5689999999999999999999999 8999998764
No 171
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.22 E-value=0.00044 Score=67.51 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=32.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|+.|+++|+.|+++|+ +|+|+|+.+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCC
Confidence 4689999999999999999999999 8999999763
No 172
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.21 E-value=0.00047 Score=66.71 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|..|+++|+.|+++|+ +|+++|+.+.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence 34689999999999999999999999 8999999864
No 173
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.21 E-value=0.00041 Score=65.31 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=30.9
Q ss_pred eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~ 180 (240)
+|+|||+|.+|+++|+.++++| . +|+|+||...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA-NVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc-cEEEEecCCC
Confidence 5899999999999999999999 9 8999999875
No 174
>PRK07121 hypothetical protein; Validated
Probab=97.21 E-value=0.00073 Score=64.89 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|.+||++|+.+++.|. +|+|+||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence 35689999999999999999999999 8999999874
No 175
>PLN02697 lycopene epsilon cyclase
Probab=97.18 E-value=0.00053 Score=66.91 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=30.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
..+|+|||+||+|+++|..|++.|+ +|.++|+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~~ 140 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGL-NVGLIGPD 140 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEecCc
Confidence 4689999999999999999999999 79999975
No 176
>PLN02661 Putative thiazole synthesis
Probab=97.18 E-value=0.00045 Score=64.18 Aligned_cols=36 Identities=36% Similarity=0.611 Sum_probs=32.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~ 180 (240)
...+|+|||+|++|+++|+.|++. |+ +|+|+|+...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCcc
Confidence 356999999999999999999986 89 8999999875
No 177
>PRK06996 hypothetical protein; Provisional
Probab=97.15 E-value=0.00046 Score=64.22 Aligned_cols=36 Identities=33% Similarity=0.640 Sum_probs=31.6
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcC----CCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMG----YDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G----~~~V~v~e~~~ 179 (240)
....+|+|||+||+|+++|..|++.| . +|+++|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~-~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRAL-SIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCc-eEEEecCCC
Confidence 34569999999999999999999987 4 699999975
No 178
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.14 E-value=0.00084 Score=62.57 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v 204 (240)
.+++|+|||+|+.|+.+|..|++.|. +|+++++.+.... .....+.+++.|++++++..+
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V 209 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRC-KVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAI 209 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCee
Confidence 36799999999999999999999999 7999998775321 112234456789999887654
No 179
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.14 E-value=0.00041 Score=64.44 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=29.9
Q ss_pred eEEEECCChhHHHHHHHH--HHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFL--SRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L--~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+||+|+++|+.| ++.|. +|.|+|+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCcc
Confidence 589999999999999999 77899 8999998764
No 180
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.14 E-value=0.00081 Score=65.46 Aligned_cols=80 Identities=19% Similarity=0.520 Sum_probs=60.4
Q ss_pred ccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 27 HTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 27 ~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
....+..+.++++.+|.+|+ -|+.+||-..+|++-+...++|+|.+- +-+.+ .| .-|- .||+.|+++
T Consensus 387 ~~~p~~ee~~e~a~kc~~cG--~C~~~CP~~l~i~eam~~A~~Gd~~~l-~~l~d------~C-~~C~---rCEq~Cpk~ 453 (772)
T COG1152 387 KEKPDDEEFMEYARKCTYCG--NCMRACPNELDIPEAMEYAAKGDFSKL-EDLHD------VC-IGCG---RCEQVCPKN 453 (772)
T ss_pred cCCCChHHHHHHHHhccccc--chhccCCcccchHHHHHHhhcCChHHH-HHHHH------Hh-hhhh---hhhhhCccc
Confidence 34557889999999999999 699999999999999999999999754 33332 22 3454 699999975
Q ss_pred ccCCCccccchhhHHHHH
Q psy16201 107 AAEEGPINIGGLQQFATE 124 (240)
Q Consensus 107 ~~~~~pV~I~~l~r~~~~ 124 (240)
. || +..+++....
T Consensus 454 i----pi-~nm~~~a~~~ 466 (772)
T COG1152 454 I----PI-LNMIEKAAQK 466 (772)
T ss_pred C----ch-hhHHHHHHHH
Confidence 3 33 4555555443
No 181
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.12 E-value=0.00066 Score=65.62 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|.+|+++|+.+++.|. +|+|+||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence 45689999999999999999999999 8999999874
No 182
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.12 E-value=0.00034 Score=65.58 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=29.2
Q ss_pred EEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 149 ALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 149 aViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|||+|++||++|..|+++|+ +|+|+|+++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~-~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCC-cEEEEecCcc
Confidence 599999999999999999999 8999999875
No 183
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.12 E-value=0.00059 Score=65.16 Aligned_cols=36 Identities=31% Similarity=0.584 Sum_probs=32.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
++|+|||+|++|+++|..|+++|. +|+++|+...+|
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~~~gG 37 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGA-DVTVIERDGLGG 37 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCCCC
Confidence 479999999999999999999999 799999877544
No 184
>PTZ00058 glutathione reductase; Provisional
Probab=97.12 E-value=0.00064 Score=66.78 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=34.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
...+|+|||+||+|+++|..+++.|. +|.++|+...||
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~~~GG 84 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKA-KVALVEKDYLGG 84 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCC-eEEEEecccccc
Confidence 45689999999999999999999999 899999876555
No 185
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.11 E-value=0.00076 Score=61.58 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=47.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccc-------ccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT-------NVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~-------~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|+|+|+.||.+|.+|+++|+ +|+++|..+..+.. ......++..|++++++..+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCce
Confidence 4799999999999999999999999 89999999864321 12335667888888887754
No 186
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.10 E-value=0.00055 Score=65.97 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=29.9
Q ss_pred eEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRM--GYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~ 179 (240)
+|+|||+|++|+++|+.|++. |. +|+|+|+..
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNW-SITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence 699999999999999999997 89 899999965
No 187
>PRK14727 putative mercuric reductase; Provisional
Probab=97.09 E-value=0.0007 Score=64.90 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=34.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~~~ 182 (240)
....+|+|||+|++|+++|..|++.|. +|+++|+. ..||
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~~~~GG 53 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGADVIGG 53 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCccee
Confidence 345789999999999999999999999 89999987 4444
No 188
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.08 E-value=0.00078 Score=64.45 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
..+|+|||+||+|+++|.++++.|. +|.|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~-~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGL-KVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence 4689999999999999999999999 8999998
No 189
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.06 E-value=0.0012 Score=61.13 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=51.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC-----ccccc-----c---------chHHHhccCceEEeCCccC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY-----DMVTN-----V---------SPRIVKGTTSRHLYGPEQG 205 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~-----~~~~~-----~---------~~~~~~~~gv~~~~~~~vg 205 (240)
++|+|||+|++|+++|..|++.+.+ +|+|+++.+. +.+.. . ...+.+..++++.++..+-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999886543 7999988663 11100 0 1123356688888776542
Q ss_pred c-c-----cCHHHHHhhcCCcEEEEecccc
Q psy16201 206 S-F-----LNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 206 ~-~-----i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
. + +..+.- .-.||.+++++...
T Consensus 83 ~id~~~~~v~~~~~--~~~yd~LVlATG~~ 110 (377)
T PRK04965 83 DIDAEAQVVKSQGN--QWQYDKLVLATGAS 110 (377)
T ss_pred EEECCCCEEEECCe--EEeCCEEEECCCCC
Confidence 2 1 111110 11499999997654
No 190
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.04 E-value=0.00068 Score=63.02 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=29.8
Q ss_pred eEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRM--GYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~ 179 (240)
+|+|||+|++|+++|+.|++. |+ +|.++|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence 589999999999999999987 99 799999976
No 191
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.01 E-value=0.0012 Score=62.21 Aligned_cols=59 Identities=15% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+.+|..|++.|. +|+++++.+... ......+.++..|+++.++..+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 5689999999999999999999999 799999876421 1122334567789998877543
No 192
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.01 E-value=0.00087 Score=65.80 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=32.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|++||++|+.++++|+ +|+|+||...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~~ 43 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGL-DVVVLEKEPV 43 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-eEEEEecCCC
Confidence 5689999999999999999999999 8999999874
No 193
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.01 E-value=0.00082 Score=64.28 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=31.4
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|.+||++|..+++.|. +|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~-~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGF-DVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence 589999999999999999999999 8999999753
No 194
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.01 E-value=0.0012 Score=62.91 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=45.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+.+|..|++.|. +|+++|+.+... +.....+.++..|++++++..+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 4799999999999999999999999 799999876421 1122334567789998887643
No 195
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.0016 Score=62.22 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=51.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY 224 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~ 224 (240)
+++|+|+|-|.+|+++|.+|.++|+ .|+++|.++... +.....+...++++..+. ...+++. .+|.||+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~~--~~~~~~~~~~~i~~~~g~-----~~~~~~~---~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAPE--GLAAQPLLLEGIEVELGS-----HDDEDLA---EFDLVVK 75 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCcc--chhhhhhhccCceeecCc-----cchhccc---cCCEEEE
Confidence 8899999999999999999999999 899999777652 111122335677777655 2233333 4899999
Q ss_pred ec
Q psy16201 225 SN 226 (240)
Q Consensus 225 s~ 226 (240)
|.
T Consensus 76 SP 77 (448)
T COG0771 76 SP 77 (448)
T ss_pred CC
Confidence 83
No 196
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.99 E-value=0.00092 Score=62.30 Aligned_cols=85 Identities=11% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCc-----cccc-------------cchHHHhccCceEEeCCccC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYD-----MVTN-------------VSPRIVKGTTSRHLYGPEQG 205 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~-----~~~~-------------~~~~~~~~~gv~~~~~~~vg 205 (240)
.++|+|||+|++|+++|..|++.|++ +|+++++.... .+.. ....++...+++++++..+-
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 46899999999999999999999864 79999987531 1110 01233456688888775431
Q ss_pred c------ccCHHHHHhhcCCcEEEEecccch
Q psy16201 206 S------FLNIELISEKTAYQWVYYSNCKVL 230 (240)
Q Consensus 206 ~------~i~~e~L~~~s~~d~V~~s~~~~~ 230 (240)
. .+.++.=.. -.||.+++++....
T Consensus 83 ~id~~~~~v~~~~g~~-~~yd~LViATGs~~ 112 (396)
T PRK09754 83 TLGRDTRELVLTNGES-WHWDQLFIATGAAA 112 (396)
T ss_pred EEECCCCEEEECCCCE-EEcCEEEEccCCCC
Confidence 1 111111001 14899999976554
No 197
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.98 E-value=0.00096 Score=64.57 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=31.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
...+|+|||+|+.|+++|++|++. |. +|+|+||...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~-~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEW-SITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCC-eEEEEEcCCc
Confidence 356899999999999999999985 78 8999999763
No 198
>PLN02507 glutathione reductase
Probab=96.97 E-value=0.0011 Score=64.08 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=31.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
....+|+|||+||+|+++|..+++.|. +|.++|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~-~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA-KVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 346789999999999999999999999 8999996
No 199
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.97 E-value=0.001 Score=66.16 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=32.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|+.|+++|+.|+++|+ +|+++|+.+.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~ 105 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDF 105 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecccc
Confidence 4689999999999999999999999 8999999864
No 200
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.97 E-value=0.0036 Score=53.76 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=50.9
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
-.+++|+|||+|..|..-+..|.+.|. +|+|++......+ ....+...+.+..+. ...+++. +++.|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l----~~l~~~~~i~~~~~~-----~~~~dl~---~~~lV 73 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESEL----TLLAEQGGITWLARC-----FDADILE---GAFLV 73 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHH----HHHHHcCCEEEEeCC-----CCHHHhC---CcEEE
Confidence 457899999999999999999999999 8999987644321 122222344544333 3444443 48999
Q ss_pred EEecccc
Q psy16201 223 YYSNCKV 229 (240)
Q Consensus 223 ~~s~~~~ 229 (240)
|.++.+.
T Consensus 74 i~at~d~ 80 (205)
T TIGR01470 74 IAATDDE 80 (205)
T ss_pred EECCCCH
Confidence 9886553
No 201
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.96 E-value=0.0014 Score=62.83 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCccC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQG 205 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~vg 205 (240)
-.++++|||+|+.|+..|..+++.|. +|||+|+.+... +.....+.+++.|+.++++..+.
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 45789999999999999999999999 799999998632 33344456666778888877543
No 202
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.96 E-value=0.00093 Score=61.16 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.6
Q ss_pred eEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRM---GYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~ 180 (240)
+|+|||+|++|+.+|..|.++ ++ +|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCC
Confidence 589999999999999999654 57 7999998874
No 203
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.0014 Score=60.08 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=31.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
.+++|||+|.+|+..|..|+++|. +|.|+||++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk-~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCC-EEEEEeccccC
Confidence 468999999999999999999999 89999998863
No 204
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.94 E-value=0.0009 Score=64.61 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
..+|+|||+||+|+++|..|+++|. +|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~-~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK-KVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence 4689999999999999999999999 8999996
No 205
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.93 E-value=0.0019 Score=61.70 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=46.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
..++|+|||+|+.|+..|..|++.|. +|+++|+.+... ......+.++..|++++++..+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V 238 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKV 238 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEE
Confidence 35799999999999999999999999 799999876421 1222334566789998887643
No 206
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.92 E-value=0.0011 Score=64.88 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~-~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL-NTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEeccCC
Confidence 58999999999999999999999 8999999764
No 207
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.91 E-value=0.0019 Score=59.70 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.+++|+|||+|++|+.+|..|++.|. +|+++++.+... +.....+.+++.|+++.++..+
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v 206 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQL 206 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeE
Confidence 46799999999999999999999999 799999876422 1112334557788888876644
No 208
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.91 E-value=0.0012 Score=63.84 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+| +||++|+.+++.|. +|+|+||...
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGL-SVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCC-cEEEEecCCC
Confidence 5689999999 99999999999999 8999999874
No 209
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.90 E-value=0.0012 Score=65.53 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
..+|+|||+|++|++||+.+++.|. +|.++|+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~ 36 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGA-KTLLLTHN 36 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCC-cEEEEecc
Confidence 4689999999999999999999999 89999987
No 210
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.89 E-value=0.0019 Score=61.60 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=46.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+.+|..|++.|. +|+++|+.+... +.....+.++..|+++.++..+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 4799999999999999999999999 799999876422 2223345567789998887644
No 211
>PRK06370 mercuric reductase; Validated
Probab=96.87 E-value=0.002 Score=61.34 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+... ......+.++..|+++.++..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 5799999999999999999999999 799999877422 1223344567788998887543
No 212
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.87 E-value=0.002 Score=61.04 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+.+|..|++.|. +|+++|+.+... +.....+.+++.|+++.++..+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS-KVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 4799999999999999999999999 799999877421 1222334556778888887644
No 213
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.87 E-value=0.002 Score=61.12 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=45.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+.+|..|++.|. +|+++++.+... +.....+.++..|+++.++..+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA-EVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 4799999999999999999999999 799999877532 1122334566788988887643
No 214
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.86 E-value=0.0018 Score=61.54 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=45.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+.+|..|++.|. +|+++++.+... +.....+.++..|++++++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V 230 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQV 230 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 4799999999999999999999999 799999886421 1122334566788988887643
No 215
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.85 E-value=0.002 Score=61.06 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=46.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+..|..|++.|. +|+++++.+... +.....+.+++.|++++++..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v 212 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI 212 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeE
Confidence 4799999999999999999999999 799999876421 2223345667789999887654
No 216
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.85 E-value=0.002 Score=61.29 Aligned_cols=58 Identities=9% Similarity=0.151 Sum_probs=45.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.++|+|||+|.+|+..|..|++.|. +|+++++.+... +.....+.++..|+++.++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~ 229 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS-ETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSK 229 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCE
Confidence 4799999999999999999999999 799999886532 112233456678888887753
No 217
>PRK09897 hypothetical protein; Provisional
Probab=96.85 E-value=0.0015 Score=63.80 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=29.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~ 180 (240)
++|+|||+|++|+++|..|.+.+ . +|+|||+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l-~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPL-SISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCC-cEEEEecCCC
Confidence 48999999999999999998864 5 7999999764
No 218
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.81 E-value=0.0024 Score=60.83 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=45.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+.+|..|.+.|. +|+++++.+... +.....+.+++.|++++++..+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT-KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 4689999999999999999999999 799999876432 1122334567789998887644
No 219
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.0017 Score=64.09 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK~~~ 37 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGV-HVDLFSLVPV 37 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCC-cEEEEEccCC
Confidence 389999999999999999999999 8999998764
No 220
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.78 E-value=0.0026 Score=60.35 Aligned_cols=60 Identities=10% Similarity=0.187 Sum_probs=45.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
..++|+|||+|+.|+..|..|++.|. +|+++++.+... +.....+.++..|+++.++..+
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV-KVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence 35799999999999999999999999 799999887422 1122334556778888776543
No 221
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.78 E-value=0.0043 Score=59.85 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=50.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
..+++|+|+|.|.+|++++..|.+.|+ +|+++|..... ...+++.|+.+..+. ...+.+. .+|.|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~------~~~l~~~g~~~~~~~-----~~~~~l~---~~D~V 74 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDA------LRPHAERGVATVSTS-----DAVQQIA---DYALV 74 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHH------HHHHHhCCCEEEcCc-----chHhHhh---cCCEE
Confidence 357899999999999999999999999 79999965321 122455687766433 2333343 38999
Q ss_pred EEec
Q psy16201 223 YYSN 226 (240)
Q Consensus 223 ~~s~ 226 (240)
|.|.
T Consensus 75 V~Sp 78 (488)
T PRK03369 75 VTSP 78 (488)
T ss_pred EECC
Confidence 9995
No 222
>PLN02546 glutathione reductase
Probab=96.77 E-value=0.002 Score=63.31 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
.+.+|+|||+||+|+.+|..++++|. +|.++|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGA-SAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 35789999999999999999999999 8999996
No 223
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.77 E-value=0.0017 Score=64.56 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=32.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGL-RVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCC-CEEEEeccCC
Confidence 4589999999999999999999999 8999999764
No 224
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.77 E-value=0.0026 Score=59.69 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=45.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
+++|+|||+|++|+.+|..|++.|. +|+++++.+... +.....+.++..|+++.++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 5799999999999999999999999 799999876431 1222334567788988876643
No 225
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.76 E-value=0.0071 Score=57.28 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc--cCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG--TTSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~--~gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
+++|+|+|.|.+|+++|..|+++|+ .|+++|....... ...++. .|+.+..+.. ..+ +.. .+|.|
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~~~----~~~l~~~~~gi~~~~g~~-----~~~-~~~--~~d~v 71 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKPER----VAQIGKMFDGLVFYTGRL-----KDA-LDN--GFDIL 71 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCchh----HHHHhhccCCcEEEeCCC-----CHH-HHh--CCCEE
Confidence 6799999999999999999999999 7999997665321 112333 4777776542 222 222 49999
Q ss_pred EEec
Q psy16201 223 YYSN 226 (240)
Q Consensus 223 ~~s~ 226 (240)
++|.
T Consensus 72 v~sp 75 (445)
T PRK04308 72 ALSP 75 (445)
T ss_pred EECC
Confidence 9995
No 226
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.76 E-value=0.0017 Score=63.37 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.||..+++.|. +|+|+||...
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGR-RVLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC-eEEEEEccCC
Confidence 5689999999999999999999999 8999999874
No 227
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.75 E-value=0.0041 Score=59.20 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=43.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc--cccchHHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV--TNVSPRIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~--~~~~~~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..|++.|. +|+++++...... +....+.+++.|+.|+++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 45899999999999999999999999 7999998754221 1111234567788887654
No 228
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.74 E-value=0.0062 Score=57.49 Aligned_cols=73 Identities=14% Similarity=0.338 Sum_probs=50.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
.+++|+|+|+|.+|+++|..|++.|+ +|++.|+...... . ....++..|+.+..+. ...+.+.. .+|.||
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~-~-~~~~l~~~g~~~~~~~-----~~~~~~~~--~~d~vV 73 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSEN-P-EAQELLEEGIKVICGS-----HPLELLDE--DFDLMV 73 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccch-h-HHHHHHhcCCEEEeCC-----CCHHHhcC--cCCEEE
Confidence 36789999999999999999999999 7999997653211 1 1233556687776544 12232222 388888
Q ss_pred Eec
Q psy16201 224 YSN 226 (240)
Q Consensus 224 ~s~ 226 (240)
.|.
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 885
No 229
>PLN02976 amine oxidase
Probab=96.74 E-value=0.002 Score=68.96 Aligned_cols=38 Identities=34% Similarity=0.622 Sum_probs=34.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
...++|+|||+|++|+++|+.|.+.|+ +|+|||+....
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~-~V~VlEa~~~v 728 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGF-SVTVLEARSRI 728 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCC-cEEEEeeccCC
Confidence 446789999999999999999999999 89999998753
No 230
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.72 E-value=0.0018 Score=63.15 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=32.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|.+||++|..+++.|. +|+|+||..
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGK-RVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 4589999999999999999999999 799999987
No 231
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.72 E-value=0.0019 Score=63.29 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+||+|+++|+.|+++|+ +|.++|+...
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g~-~v~~~e~~~~ 34 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAGL-KVAMVEIGAA 34 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCCC-eEEEEeccCc
Confidence 79999999999999999999999 8999999875
No 232
>PRK12839 hypothetical protein; Provisional
Probab=96.72 E-value=0.0024 Score=62.79 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
....+|+|||+|.+|+++|+.|+++|. +|+|+|+...
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~-~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGA-KVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 446789999999999999999999999 7999999764
No 233
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.71 E-value=0.0023 Score=62.11 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~ 179 (240)
....+|+|||+|++|+++|+.|++. |. +|+|+||.+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~-~V~vlEr~~ 41 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDW-NIEVVERLD 41 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCC-eEEEEEcCC
Confidence 4456899999999999999999998 88 899999944
No 234
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.71 E-value=0.0032 Score=60.97 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=45.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc-cCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG-TTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~-~gv~~~~~~~v 204 (240)
.+++|+|||+|+.|+.+|..|++.|. +|+++++.+.........+.++. .|+.+.++..+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~-~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v 411 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVR-HVTVLEFADELKADKVLQDKLKSLPNVDILTSAQT 411 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCc-EEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCee
Confidence 46899999999999999999999999 79999987654322223344444 58888887643
No 235
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.71 E-value=0.0021 Score=63.02 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|++|+++|..+++.|. +|+|+||...
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~~ 41 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGL-STVVVEKAPH 41 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 4689999999999999999999999 8999999764
No 236
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.70 E-value=0.0038 Score=54.77 Aligned_cols=59 Identities=14% Similarity=0.311 Sum_probs=44.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhcc-CceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT-TSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~-gv~~~~~~~ 203 (240)
.+++|+|||+|++|+..|..|++.+. +|+++++.+.........+.+++. ++++.++..
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~-~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~ 199 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAK-KVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNST 199 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcC-EEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccE
Confidence 46799999999999999999999999 799999876432222233445555 888876653
No 237
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.005 Score=59.06 Aligned_cols=71 Identities=11% Similarity=-0.003 Sum_probs=48.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
.+++|+|+|.|.+|.++|..|.+.|+ +|+++|.+....... ...++. ++.+.++. .+.+.+. .+|.||
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~~~~~~~--~~~l~~-~~~~~~~~-----~~~~~~~---~~d~vV 74 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCNAVEARE--VGALAD-AALLVETE-----ASAQRLA---AFDVVV 74 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCCcccchH--HHHHhh-cCEEEeCC-----CChHHcc---CCCEEE
Confidence 37899999999999999999999999 799999765422111 112433 44444443 2334343 389999
Q ss_pred Eec
Q psy16201 224 YSN 226 (240)
Q Consensus 224 ~s~ 226 (240)
+|.
T Consensus 75 ~Sp 77 (468)
T PRK04690 75 KSP 77 (468)
T ss_pred ECC
Confidence 984
No 238
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.70 E-value=0.0022 Score=63.28 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=32.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||++|+.+++.|. +|+|+||...
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~~ 45 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSAH 45 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCCC
Confidence 5689999999999999999999999 8999999874
No 239
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.69 E-value=0.0059 Score=58.60 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
-.+++|.|+|.|.+|+++|..|.++|+ .|+++|+.... ....++..|+.+..+. ...+.+. .+|.|
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~-----~~~~l~~~gi~~~~~~-----~~~~~~~---~~d~v 78 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETA-----RHKLIEVTGVADISTA-----EASDQLD---SFSLV 78 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHH-----HHHHHHhcCcEEEeCC-----CchhHhc---CCCEE
Confidence 456789999999999999999999999 89999965322 1223455688877643 1223332 38999
Q ss_pred EEec
Q psy16201 223 YYSN 226 (240)
Q Consensus 223 ~~s~ 226 (240)
|+|.
T Consensus 79 V~Sp 82 (473)
T PRK00141 79 VTSP 82 (473)
T ss_pred EeCC
Confidence 9984
No 240
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.68 E-value=0.0033 Score=60.16 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+... +.....+.++..|+++.++..+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEE
Confidence 5799999999999999999999999 799999876421 1122234556778888877543
No 241
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.67 E-value=0.0022 Score=62.20 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~ 179 (240)
...+|+|||+|+.|+++|++|++.+ . +|+|+||..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~-~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLK-KIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCC-EEEEEecCc
Confidence 4579999999999999999999964 6 799999975
No 242
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.67 E-value=0.0023 Score=60.64 Aligned_cols=34 Identities=32% Similarity=0.590 Sum_probs=30.2
Q ss_pred CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
++|+|||+|++|+++|..|++. ++ +|+++|+.+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~-~I~li~~~~~ 37 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKES-DIIIFEKDRD 37 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCC-CEEEEECCCC
Confidence 4899999999999999999887 57 7999999863
No 243
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.0022 Score=63.24 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
...+|+|||+|.+||.||..+++.|. +|+|+||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGL-SVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccC
Confidence 35689999999999999999999999 799999974
No 244
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.62 E-value=0.003 Score=63.02 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=31.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
...+|+|||+|.+||+||..+++.|. +|+|+|+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~-~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY-NVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 35689999999999999999999999 799999854
No 245
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.62 E-value=0.0029 Score=62.03 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+|+++|..+++.|. +|+|+|+...
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGL-EPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 5589999999999999999999999 8999999853
No 246
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.62 E-value=0.0025 Score=62.57 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~~ 38 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGF-KVAVISKVF 38 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCC-cEEEEEccC
Confidence 4589999999999999999999999 899999985
No 247
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.61 E-value=0.0022 Score=52.34 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=28.1
Q ss_pred EEECCChhHHHHHHHHHHc-----CCCcEEEEecCCCc
Q psy16201 149 ALIGCGPASLSCATFLSRM-----GYDDITIYEKNTYD 181 (240)
Q Consensus 149 aViG~G~~Gl~~a~~L~~~-----G~~~V~v~e~~~~~ 181 (240)
||||+|++|++++..|.+. .. +|+|||+...+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~-~I~vfd~~~~G 37 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPL-EITVFDPSPFG 37 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCC-EEEEEcCCCcc
Confidence 6999999999999999887 35 89999997764
No 248
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.60 E-value=0.0024 Score=61.09 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=27.7
Q ss_pred eEEEECCChhHHHHHHHHHHcC---CCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMG---YDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~e~~~~ 180 (240)
+|+|||+|++|..+|..|++.+ + +|+++|+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~-~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDAL-SVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSS-EEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCc-EEEEEecCCC
Confidence 6999999999999999999998 8 8999999874
No 249
>PRK06116 glutathione reductase; Validated
Probab=96.59 E-value=0.0041 Score=58.90 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=45.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+..|..|++.|. +|+++++.+... +.....+.++..|+++.++..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V 231 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS-ETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP 231 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEE
Confidence 5799999999999999999999999 799999876421 1122334567788888877644
No 250
>PLN02507 glutathione reductase
Probab=96.58 E-value=0.0041 Score=60.13 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=45.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+..|..|++.|. +|+++++.+... +.....+.+++.|++++++..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA-TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 5799999999999999999999999 799999876432 1122234567789999887643
No 251
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.57 E-value=0.0045 Score=58.23 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=46.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
..++|+|||+|++|+.+|..|.+.|. +|+++++.+... +.....+.++..|++++++..+
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v 214 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFV 214 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 35799999999999999999999999 799999876421 2223345567788988877644
No 252
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.57 E-value=0.0038 Score=63.65 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.+++|+|||+|+.|+.+|..|++.|. +|+|+++.+... ......+.++..|++++++..+
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G~-~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v 205 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLGM-DVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDT 205 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCce
Confidence 35789999999999999999999999 799999876532 1122344567889999888743
No 253
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.0027 Score=62.38 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC---CCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG---YDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+++.| . +|+|+||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcccC
Confidence 357999999999999999999998 8 7999999763
No 254
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.56 E-value=0.0026 Score=63.09 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+++. |. +|+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECCCc
Confidence 45899999999999999999998 99 8999999863
No 255
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.56 E-value=0.0029 Score=62.87 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGY-KTACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC-cEEEEeccCC
Confidence 5689999999999999999999999 7999999864
No 256
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.55 E-value=0.0043 Score=59.25 Aligned_cols=58 Identities=12% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.++|+|||+|..|+..|..|++.|. +|+++++.+... ......+.++..|+++.++..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~ 240 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV-KVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSR 240 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence 4689999999999999999999999 799999876422 112233556778898887763
No 257
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.54 E-value=0.0033 Score=60.70 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKN 178 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~ 178 (240)
+..+|+|||+||+|+.+|..+++. |. +|.++|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~-~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK-RVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC-EEEEEecc
Confidence 356899999999999999999997 89 89999973
No 258
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.54 E-value=0.0023 Score=63.31 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC-CEEEEEecC
Confidence 6899999999999999999999 799999987
No 259
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.54 E-value=0.0037 Score=61.71 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~~ 40 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQ-SCALLSKVF 40 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccC
Confidence 5689999999999999999999999 799999985
No 260
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.54 E-value=0.003 Score=62.43 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~~ 45 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGL-KTACITKVF 45 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccC
Confidence 5689999999999999999999999 899999975
No 261
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.53 E-value=0.0053 Score=58.00 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=46.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
..++|+|||+|+.|+..|..|++.|. +|+++++.+... +.....+.+++.|+++.++..+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGS-KVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 34699999999999999999999999 799999876421 1112234567789998887643
No 262
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.52 E-value=0.0031 Score=62.85 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.||..+++.|. +|+|+||...
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~~~ 84 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 84 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCC-cEEEEEcCCC
Confidence 4689999999999999999999999 8999999863
No 263
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.52 E-value=0.004 Score=61.30 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=33.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
....+|+|||+|.+|+++|..++++|+ +|+|+|+...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~~~ 46 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKDPV 46 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence 346789999999999999999999999 8999999763
No 264
>PRK12831 putative oxidoreductase; Provisional
Probab=96.52 E-value=0.007 Score=58.01 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=42.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..|.+.|. +|+++.+.....+..... ..+.+.|++|+++.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 46899999999999999999999999 699998865432222111 12355777776554
No 265
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.52 E-value=0.004 Score=64.02 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=47.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
..++++|||+|+.|+.+|..|++.|. +|+|++..+... ....+.+.+++.|++++++..+
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G~-~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v 210 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLGV-ETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNT 210 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeE
Confidence 35789999999999999999999999 799999877422 1223445677889999887644
No 266
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.51 E-value=0.0053 Score=59.48 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=44.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHh-ccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVK-GTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~-~~gv~~~~~~~ 203 (240)
.+++|+|||+|.+|+.+|..|+..|. +|+++++.+.........+.+. ..|++++++..
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~-~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~ 409 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVK-HVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQ 409 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEECccccccHHHHHHHhcCCCcEEEECcE
Confidence 57899999999999999999999999 8999998765433333333443 35888877653
No 267
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.50 E-value=0.0034 Score=59.20 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.2
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+.++|+|||+|.+|+.+|..|.+.++ +|+++|+++.
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCC
Confidence 3456799999999999999999987788 7999998874
No 268
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.49 E-value=0.0052 Score=58.27 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
..++|+|||+|++|+.+|..|++.|. +|+++++.+... +.....+.+++.|+.+.++..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~ 229 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLGV-QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTS 229 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 35789999999999999999999999 799999876421 111233456678999888764
No 269
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.49 E-value=0.0032 Score=59.35 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=25.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIY 175 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~ 175 (240)
+|+|||+|.+|.+||+.++++|+ +|.++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~-~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGA-KVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEE
Confidence 58999999999999999999999 79999
No 270
>PTZ00058 glutathione reductase; Provisional
Probab=96.49 E-value=0.0049 Score=60.61 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=45.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|..|+..|..|++.|. +|+++++.+... +.....+.+++.|+++.++..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 6799999999999999999999999 799999876421 1222334566789988877643
No 271
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.48 E-value=0.0034 Score=61.70 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=30.5
Q ss_pred CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~ 180 (240)
.+|+|||+|.+||+||+.+++.| . +|+|+||...
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~-~V~vleK~~~ 39 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSL-DVAVVAKTHP 39 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCC-cEEEEeccCC
Confidence 47999999999999999999874 7 7999999864
No 272
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.47 E-value=0.0036 Score=59.48 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|++|+++|..|++.|. +|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~-~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGK-RVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-cEEEEECCC
Confidence 3589999999999999999999999 799999864
No 273
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.47 E-value=0.0052 Score=58.25 Aligned_cols=58 Identities=24% Similarity=0.413 Sum_probs=43.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
..++|+|||+|++|+..|..|++.|. +|+++++.+... +.....+.++.. +++.++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~ 231 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAK 231 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCE
Confidence 35799999999999999999999999 799999877432 112223344556 77777653
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=96.46 E-value=0.0057 Score=58.37 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=44.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-----cccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-----MVTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-----~~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+..|..|++.|. +|+++++.... .+.....+.++..|+++.++..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~-~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS-RVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 5799999999999999999999999 79999874321 12223345567789998887543
No 275
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.46 E-value=0.0038 Score=59.72 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=33.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~ 182 (240)
..+|+|||+|.+|+.+|..|++.|. +|.++|+++. ||
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~yGG 41 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGK-KVLHMDRNPYYGG 41 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCC-EEEEecCCCCcCc
Confidence 4689999999999999999999999 8999999986 44
No 276
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.43 E-value=0.0036 Score=55.48 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=28.5
Q ss_pred eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~ 180 (240)
+++|||+|.+|..+|..|++.| . +|.|+|+...
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~-~VlvlEaG~~ 35 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNK-KVLVLEAGPR 35 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS--EEEEESSBS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCC-cEEEEEcccc
Confidence 6899999999999999999997 6 7999999864
No 277
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.43 E-value=0.0041 Score=62.32 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=31.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
..+|+|||+||+|+++|..+++.|. +|.|+|+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~-kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGL-KVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 5689999999999999999999999 89999975
No 278
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.42 E-value=0.0046 Score=59.33 Aligned_cols=38 Identities=24% Similarity=0.459 Sum_probs=34.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TYDM 182 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~~~ 182 (240)
...+++|||+||+|..+|..+++.|. +|.++|+. ..||
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~-kvalvE~~~~lGG 41 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGL-KVALVEKGERLGG 41 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CEEEEeecCCcCc
Confidence 35789999999999999999999999 59999999 4665
No 279
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.41 E-value=0.004 Score=50.96 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|+|+|..|.+.|..|+++|+ +|++|.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccH
Confidence 69999999999999999999999 899999875
No 280
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=96.41 E-value=0.03 Score=56.66 Aligned_cols=64 Identities=23% Similarity=0.543 Sum_probs=48.2
Q ss_pred CChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 30 LSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 30 ~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
++..+.....++|+.|+ -|+.+||.+..+...+..+..|++..... +...| -.|. .|++.|+.+
T Consensus 355 p~~~el~~~~~kCI~CG--~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~-------~~~~C-t~CG---~C~evCP~g 418 (731)
T cd01916 355 PTDEEFQELAAKCTDCG--WCTRACPNSLRIKEAMEAAKEGDFSGLAD-------LFDQC-VGCG---RCEQECPKE 418 (731)
T ss_pred CchHHHHHhhhcCCCCC--cccccCCCCCcHHHHHHHHhcCChhhhhh-------hHhhh-hhhh---HHhhhCCCC
Confidence 45677788999999999 79999999998888888888887643211 12344 4566 599999964
No 281
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.40 E-value=0.0082 Score=55.05 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=44.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCCcc--ccccchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTYDM--VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~~~--~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.+++|+|||+|+.|+.+|..|++.|. + |+|+++..... ........++..|+++.++..
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~-~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~ 232 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGA-EKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVT 232 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccC
Confidence 47899999999999999999999998 6 99999765321 112223456778888877654
No 282
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.40 E-value=0.0041 Score=62.24 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.||..+++.|. +|+|+|+...
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGL-DTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 4589999999999999999999999 7999998764
No 283
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.39 E-value=0.013 Score=56.41 Aligned_cols=69 Identities=16% Similarity=0.305 Sum_probs=48.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhcc--CceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT--TSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~--gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
+++|.|+|.|.+|+++|..|.++|+ +|+++|...... ....++.. |+++..+. ...+.+. .+|.|
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~~----~~~~L~~~~~~~~~~~g~-----~~~~~~~---~~d~v 73 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAPP----NLAALRAELPDAEFVGGP-----FDPALLD---GVDLV 73 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCch----hHHHHHhhcCCcEEEeCC-----CchhHhc---CCCEE
Confidence 6789999999999999999999999 799999765321 11224444 55665543 2233333 38899
Q ss_pred EEec
Q psy16201 223 YYSN 226 (240)
Q Consensus 223 ~~s~ 226 (240)
++|.
T Consensus 74 v~sp 77 (498)
T PRK02006 74 ALSP 77 (498)
T ss_pred EECC
Confidence 9884
No 284
>PRK08275 putative oxidoreductase; Provisional
Probab=96.38 E-value=0.0038 Score=61.04 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+++. |. +|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCCC
Confidence 45899999999999999999987 68 7999999874
No 285
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.38 E-value=0.004 Score=59.98 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=29.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
.+|+|||+||+|+.+|..+++.|. +|.++|+
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~-~v~lie~ 33 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGA-KVMLLDF 33 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 589999999999999999999999 8999997
No 286
>PLN02546 glutathione reductase
Probab=96.37 E-value=0.0064 Score=59.77 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
..++|+|||+|+.|+..|..|++.|. +|+++++.+... +.....+.++..|+++.++..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~-~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~ 315 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS-DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEES 315 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCE
Confidence 45799999999999999999999999 799999876421 112233456778999887754
No 287
>KOG2820|consensus
Probab=96.37 E-value=0.0044 Score=57.25 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~ 181 (240)
.....|+|||+|+.|+++|+.|+++|. ++.++|+.+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~-killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGD-KILLLEQFPLP 42 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCC-eEEEEeccCCC
Confidence 345689999999999999999999999 89999998743
No 288
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.37 E-value=0.011 Score=56.32 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=50.7
Q ss_pred CCCCeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201 143 FPDTKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW 221 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~ 221 (240)
..+++|.|+|.|-+|++ +|..|.++|+ +|+++|...... ...++..|+.+.++. ..+.+. .+|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~-----~~~l~~~gi~~~~~~------~~~~~~---~~d~ 69 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAV-----TQRLLELGAIIFIGH------DAENIK---DADV 69 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChH-----HHHHHHCCCEEeCCC------CHHHCC---CCCE
Confidence 34678999999999999 6999999999 799999876431 223566788876522 233332 3899
Q ss_pred EEEec
Q psy16201 222 VYYSN 226 (240)
Q Consensus 222 V~~s~ 226 (240)
|++|.
T Consensus 70 vv~sp 74 (461)
T PRK00421 70 VVYSS 74 (461)
T ss_pred EEECC
Confidence 99884
No 289
>PRK13748 putative mercuric reductase; Provisional
Probab=96.35 E-value=0.0068 Score=58.97 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=44.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+..|..|++.|. +|+++++..... +.....+.++..|+++.++..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS-KVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 4799999999999999999999999 899999754211 1122334567788988877643
No 290
>PRK10262 thioredoxin reductase; Provisional
Probab=96.32 E-value=0.0067 Score=54.65 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc----ccccchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM----VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~----~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.+++|+|||+|.+|+..|..|++.|. +|+++++.+... ......+.++..++++..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~-~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 207 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRT 207 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCE
Confidence 47899999999999999999999999 799999876321 111122334567788777653
No 291
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.32 E-value=0.0047 Score=58.65 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=30.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+. .|. +|+|+||...
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~~~ 37 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDL-KILMVSKGKL 37 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCC-CEEEEecCCC
Confidence 458999999999999999974 799 8999999864
No 292
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.29 E-value=0.0048 Score=61.34 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHH----HcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLS----RMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~----~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|.+||+||..++ +.|. +|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEccCC
Confidence 5899999999999999998 6799 8999999764
No 293
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.29 E-value=0.0054 Score=58.44 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~ 182 (240)
..+|+|||+|+.|+++|+.|.+.+ . +|+|+||....+
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~~~a 41 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDL-SVALLEKEDGVA 41 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccCccc
Confidence 468999999999999999999998 8 899999988543
No 294
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.28 E-value=0.0052 Score=60.24 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=30.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|.+||+||..++ .|. +|+|+||...
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~-~V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHL-RVGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCC-CEEEEEccCC
Confidence 4568999999999999999986 599 8999999864
No 295
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.25 E-value=0.0047 Score=60.19 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..+ +.|. +|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~-~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGK-NVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCC-CEEEEEccCC
Confidence 45899999999999999999 8999 8999999753
No 296
>PRK14727 putative mercuric reductase; Provisional
Probab=96.24 E-value=0.0084 Score=57.49 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+..|..|++.|. +|+++++.... . +.....+.++..|+++.++..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS-RVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 4799999999999999999999999 89999875321 1 1122334556788888877644
No 297
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.022 Score=53.98 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=51.1
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc--cCceEEeCCccCcccCHHHHHhhcCCc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG--TTSRHLYGPEQGSFLNIELISEKTAYQ 220 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~--~gv~~~~~~~vg~~i~~e~L~~~s~~d 220 (240)
..+.-|+|+|.|-+|+++|..|.++|+ +|++.|...... ....++. .|+.+..+. .+.+.+. .+|
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~~----~~~~l~~~~~g~~~~~~~-----~~~~~~~---~~d 70 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQPP----GLDTLAREFPDVELRCGG-----FDCELLV---QAS 70 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCCch----hHHHHHhhcCCcEEEeCC-----CChHHhc---CCC
Confidence 346689999999999999999999999 899999765321 1123444 478777653 2334443 389
Q ss_pred EEEEec
Q psy16201 221 WVYYSN 226 (240)
Q Consensus 221 ~V~~s~ 226 (240)
.|++|.
T Consensus 71 ~vV~sp 76 (448)
T PRK03803 71 EIIISP 76 (448)
T ss_pred EEEECC
Confidence 999985
No 298
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.23 E-value=0.0085 Score=57.72 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=43.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc----ccccchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM----VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~----~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.++++|||+|+.|+.+|..|++.|. +|+++++... +. +.....+.++..|+++.++..
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~ 242 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFV 242 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC-cEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCce
Confidence 4589999999999999999999999 7999997421 11 122334456778999888763
No 299
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=96.22 E-value=0.0086 Score=51.05 Aligned_cols=58 Identities=21% Similarity=0.424 Sum_probs=43.8
Q ss_pred hcccCcCCCCccccCCCCCC----ChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccc
Q psy16201 39 ASRCLKCADAPCQKSCPTQI----DIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYA 107 (240)
Q Consensus 39 a~rC~~c~~~~C~~aCP~~~----di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~ 107 (240)
-.+|++|+ .|+.+||++. ..+.+|+++..|.-+ .++.+ +....| -.|. -|..-|||+.
T Consensus 38 l~~C~QCG--~CT~sCPs~r~t~y~pR~ii~~~~~g~~d---~il~~--~~lW~C-~tCy---tC~eRCPr~v 99 (195)
T COG1150 38 LEGCYQCG--TCTGSCPSGRFTDYSPRKIIRKARLGLVD---LILSS--ESLWAC-VTCY---TCTERCPRGV 99 (195)
T ss_pred HhHhhccC--cccCCCCCcccCCCCHHHHHHHHHcccHH---HHhcC--Ccceee-eech---hhhhhCCCCC
Confidence 34599999 6999999875 678999999999987 33333 334555 4666 5999999863
No 300
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.18 E-value=0.0092 Score=57.15 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=41.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.++|+|||+|+.|+..|..|++.|. +|+++|+.+... +.....+.++.. +.+.++..
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~ 236 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETK 236 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCE
Confidence 4799999999999999999999999 799999887421 111222334444 67666543
No 301
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.17 E-value=0.0069 Score=59.59 Aligned_cols=35 Identities=29% Similarity=0.585 Sum_probs=32.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+|+++|..++++|+ +|+|+|+...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~-~v~l~ek~~~ 50 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGL-KVLLVERTEY 50 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 4589999999999999999999999 8999999764
No 302
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.17 E-value=0.0058 Score=59.22 Aligned_cols=34 Identities=32% Similarity=0.520 Sum_probs=30.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.||..+++ |. +|+|+||...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EY-NVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CC-CEEEEeccCC
Confidence 4589999999999999999976 98 7999999874
No 303
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.16 E-value=0.0075 Score=50.64 Aligned_cols=33 Identities=33% Similarity=0.749 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
+|+|||+|..|...|..+++.|+ +|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 68999999999999999999999 8999998763
No 304
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.16 E-value=0.0094 Score=57.53 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=43.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.++|+|||+|+.|+..|..+... |. +|+++++.+... +.....+.++..|+++.++..
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~-~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~ 253 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGG-KVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNEN 253 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCC-eEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCE
Confidence 57999999999999999877554 89 899999877421 222334566788999888764
No 305
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.16 E-value=0.013 Score=55.74 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccc--cchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN--VSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~--~~~~~~~~~gv~~~~~~~ 203 (240)
.+++|+|||+|..|+.+|..|.+.|.++|+++++.....+.. .....+++.|+++.++..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~ 333 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAA 333 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCC
Confidence 468999999999999999999999975699999865322111 112344677888877653
No 306
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.16 E-value=0.01 Score=58.03 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=44.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-cccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-TNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-~~~~~~~~~~~gv~~~~~~~v 204 (240)
.+++|+|||+|..|+..|..|++.|. +|+++++.+.... .....+.+...|+++.++..+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V 202 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYAS-KVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTEL 202 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCC-EEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEE
Confidence 57899999999999999999999999 7999998764211 111222334568888776643
No 307
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.13 E-value=0.0081 Score=59.07 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
....+|+|||+| +|+++|..+++.|. +|.|+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~~~ 49 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGL-SVLIVEKSSY 49 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCC-cEEEEecCCC
Confidence 346799999999 89999999999999 8999999864
No 308
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.13 E-value=0.011 Score=57.26 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=43.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.++|+|||+|+.|+..|..|++.|. +|+++++.... . +.....+.++..|+++.++..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~ 244 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF-DVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVV 244 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCe
Confidence 4589999999999999999999999 79999874321 1 112233456678888887753
No 309
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.12 E-value=0.0071 Score=64.27 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=33.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGA-QVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEccCC
Confidence 45789999999999999999999999 8999999864
No 310
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.11 E-value=0.0071 Score=59.66 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.||..+++. |. +|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHL-DVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCC
Confidence 34799999999999999999987 57 7999999763
No 311
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.09 E-value=0.0074 Score=59.49 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=30.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.||..+++.| . +|+|+||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~~~ 40 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNL-KIALISKVYP 40 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCC
Confidence 358999999999999999999874 7 7999999853
No 312
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.06 E-value=0.0079 Score=57.86 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=30.0
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|+|||+|.+||++|..+++.|. |+|+||...
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~--V~lleK~~~ 35 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR--VIVLSKAPV 35 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC--EEEEEccCC
Confidence 479999999999999999999886 999999853
No 313
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.05 E-value=0.014 Score=60.11 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCcc-----ccc------------cchHHHhccCceEEeCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYDM-----VTN------------VSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~~-----~~~------------~~~~~~~~~gv~~~~~~~ 203 (240)
.++|+|||+|++|+.+|..|.++ ++ +|+||++.+... +.. ..+..++..+++++.+..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~-~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANF-DITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCC-eEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 35899999999999999999764 47 799999887532 111 112345667888888764
Q ss_pred cCc-c-----cCHHHHHhhcCCcEEEEecccc
Q psy16201 204 QGS-F-----LNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 204 vg~-~-----i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
+-. + +..+.=.. -.||.+++++...
T Consensus 82 V~~Id~~~~~V~~~~G~~-i~yD~LVIATGs~ 112 (847)
T PRK14989 82 AITINRQEKVIHSSAGRT-VFYDKLIMATGSY 112 (847)
T ss_pred EEEEeCCCcEEEECCCcE-EECCEEEECCCCC
Confidence 321 1 11110001 1489999997654
No 314
>KOG2852|consensus
Probab=96.03 E-value=0.0032 Score=57.17 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcC------CCcEEEEecCCC
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMG------YDDITIYEKNTY 180 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G------~~~V~v~e~~~~ 180 (240)
..+.++|+|||+|+.|..+|++|++++ + .|++||+...
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~-~ItifEs~~I 50 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGEL-DITIFESKEI 50 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCce-eEEEEeeccc
Confidence 345689999999999999999999987 7 7999998763
No 315
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.99 E-value=0.0085 Score=50.64 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=26.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|+|+|.|..||..|..|+++|+ +|+.||.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCCh
Confidence 489999999999999999999999 899999876
No 316
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.95 E-value=0.013 Score=55.31 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=44.7
Q ss_pred CCeEEEECCChhHHHHHHHHHH--------------cCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSR--------------MGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~--------------~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|++|+..|..|+. .+. +|+++++.+... +.+...+.+++.|+++.++..+
T Consensus 173 ~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v 251 (424)
T PTZ00318 173 LLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAV 251 (424)
T ss_pred cCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccC-EEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 3599999999999999988875 367 799999876421 2233445678899999987754
No 317
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.94 E-value=0.014 Score=59.50 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=52.1
Q ss_pred EEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc-----ccc-------------cchHHHhccCceEEeCCccCc
Q psy16201 148 IALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM-----VTN-------------VSPRIVKGTTSRHLYGPEQGS 206 (240)
Q Consensus 148 VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~-----~~~-------------~~~~~~~~~gv~~~~~~~vg~ 206 (240)
|+|||+|++|+++|..|.+. ++ +|+||++.+... +.. .....++..+++++++..+-.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~-~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMF-EITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCC-eEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEE
Confidence 68999999999999998775 47 799999887532 111 112345677899998865432
Q ss_pred -c-----cCHHHHHhhcCCcEEEEecccc
Q psy16201 207 -F-----LNIELISEKTAYQWVYYSNCKV 229 (240)
Q Consensus 207 -~-----i~~e~L~~~s~~d~V~~s~~~~ 229 (240)
+ +..+.=.. -.||.+++++...
T Consensus 80 Id~~~k~V~~~~g~~-~~yD~LVlATGs~ 107 (785)
T TIGR02374 80 IDTDQKQVITDAGRT-LSYDKLILATGSY 107 (785)
T ss_pred EECCCCEEEECCCcE-eeCCEEEECCCCC
Confidence 1 11110001 1499999997654
No 318
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.94 E-value=0.0094 Score=58.74 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||+.+++. . +|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-C-CEEEEeCCCC
Confidence 45899999999999999999876 7 8999999753
No 319
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.90 E-value=0.042 Score=47.03 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
-.+++|+|||+|-.|...+..|.+.|+ +|+|+.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 468999999999999999999999999 89999864
No 320
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.90 E-value=0.0089 Score=61.85 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.+|..+++.|. +|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGA-NVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccc
Confidence 4589999999999999999999999 8999999763
No 321
>PRK07846 mycothione reductase; Reviewed
Probab=95.89 E-value=0.015 Score=55.34 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc--c----cccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM--V----TNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~--~----~~~~~~~~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+... . .....+ +...+++++++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~~ll~~~d~~~~~~l~~-l~~~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV-RVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCccccccCHHHHHHHHH-HHhcCeEEEeCCEE
Confidence 4799999999999999999999999 799999877432 1 111111 12356777776543
No 322
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.89 E-value=0.013 Score=58.65 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=44.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHH-HhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRI-VKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~-~~~~gv~~~~~~~v 204 (240)
.++|+|||+|+.|+..|..|++.|. +|+++|+.+... +.....+. ++..|++++++..+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V 377 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLI 377 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEE
Confidence 4689999999999999999999999 799999887532 11112222 35678888877643
No 323
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.04 Score=52.26 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=48.2
Q ss_pred CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
++|.|+|.|-+|++++..|.+. |+ +|++.|...... ..+.++. |+.+.++. .+.+.+. .+|.|+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~-~v~~~D~~~~~~----~~~~l~~-g~~~~~g~-----~~~~~~~---~~d~vV 73 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQL-TVKVIDTRETPP----GQEQLPE-DVELHSGG-----WNLEWLL---EADLVV 73 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCC-eEEEEeCCCCch----hHHHhhc-CCEEEeCC-----CChHHhc---cCCEEE
Confidence 6899999999999999999887 58 799999765321 1123443 88887654 2334442 389999
Q ss_pred Eec
Q psy16201 224 YSN 226 (240)
Q Consensus 224 ~s~ 226 (240)
+|.
T Consensus 74 ~Sp 76 (438)
T PRK04663 74 TNP 76 (438)
T ss_pred ECC
Confidence 985
No 324
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.84 E-value=0.011 Score=57.77 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=30.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||++|..+++. . +|+|+||...
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~~ 41 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGPL 41 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-C-CEEEEeccCC
Confidence 45899999999999999999876 7 7999999763
No 325
>PRK02106 choline dehydrogenase; Validated
Probab=95.84 E-value=0.012 Score=57.60 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~ 179 (240)
..+++|||+|.+|+.+|..|++ .|+ +|.|+|+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~-~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDV-SVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCC-eEEEecCCC
Confidence 4689999999999999999999 799 799999985
No 326
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.83 E-value=0.017 Score=54.99 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=32.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.++|+|||+|+.|+..|..|++.|. +|+++++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~~ 203 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT-RVTIVNRSTK 203 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCc
Confidence 5799999999999999999999999 7999998764
No 327
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.83 E-value=0.012 Score=56.03 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|++|+++|..|+++|+ +|.|+|+..
T Consensus 2 Dv~IIGgG~aGl~~A~~l~~~g~-~v~lv~~~~ 33 (419)
T TIGR03378 2 DVIIIGGGLAGLSCALRLAEAGK-KCAIIAAGQ 33 (419)
T ss_pred CEEEECchHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 69999999999999999999999 799999875
No 328
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.82 E-value=0.024 Score=57.53 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..|.+.|.++|+++++.....+..... ..+.+.|++|.++.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~ 629 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLH 629 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecC
Confidence 468999999999999999999999983399999875422111111 23456788776554
No 329
>PLN02815 L-aspartate oxidase
Probab=95.81 E-value=0.011 Score=58.48 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=30.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||++|..+++.| + |+|+||...
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~~ 62 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-T-VAIITKDEP 62 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-C-EEEEECCCC
Confidence 458999999999999999999999 4 999999774
No 330
>KOG2415|consensus
Probab=95.77 E-value=0.011 Score=56.31 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHc----CCC-cEEEEecCCCcc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRM----GYD-DITIYEKNTYDM 182 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~----G~~-~V~v~e~~~~~~ 182 (240)
....+|+|||+||+||++|..|.+. +.+ +|.|+|+....|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G 118 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG 118 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence 4467899999999999999988663 322 899999987543
No 331
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=95.76 E-value=0.036 Score=56.22 Aligned_cols=64 Identities=17% Similarity=0.541 Sum_probs=47.6
Q ss_pred CChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 30 LSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 30 ~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
.+..++...+++|+.|+ .|+.+||.+..+...+.....|++... .. +...| ..|- .|++.|+.+
T Consensus 389 P~~eeLl~~~~kCI~CG--~Cv~aCP~~l~i~e~i~~a~~G~l~~l-~~------~~d~C-~~CG---~C~evCP~g 452 (784)
T TIGR00314 389 PDDEELMELANKCTQCG--NCVRTCPNSLRVDEAMAHAQKGDLSKL-EQ------LEEQC-YACG---RCEQACPKN 452 (784)
T ss_pred ChHHHHhhhcccCCCcc--cchhhCCCCcchHHHHHHHhcCCcccc-cc------CHhhh-hhhh---HHhccCCCC
Confidence 35678888999999999 699999999888888888888876422 11 12234 4565 699999964
No 332
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.76 E-value=0.0077 Score=56.78 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=28.2
Q ss_pred EECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 150 LIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 150 ViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
|||+|.+|+++|..+++.|. +|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga-~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA-SVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 79999999999999999999 8999999873
No 333
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.76 E-value=0.013 Score=57.29 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||||+.|+..|..++.+|+ +|.++|+.+.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D~ 46 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGL-KVALVEKGDL 46 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCC-eEEEEecCcc
Confidence 56799999999999999999999999 8999999884
No 334
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.74 E-value=0.031 Score=52.61 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=47.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHh-ccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVK-GTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS 225 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~-~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s 225 (240)
+|.|||.|-+|+++|..|.++|+ .|++.|......... ....++ ..|+.+..+. ..+.+. .+|.|++|
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~~~~~~~~-~~~~~~~~~gi~~~~g~------~~~~~~---~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLKPNEELEP-SMGQLRLNEGSVLHTGL------HLEDLN---NADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCCCCccchh-HHHHHhhccCcEEEecC------chHHhc---cCCEEEEC
Confidence 48999999999999999999999 799999765432111 011223 3588877643 233342 48999998
Q ss_pred c
Q psy16201 226 N 226 (240)
Q Consensus 226 ~ 226 (240)
.
T Consensus 70 p 70 (433)
T TIGR01087 70 P 70 (433)
T ss_pred C
Confidence 5
No 335
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.047 Score=51.53 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=47.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY 224 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~ 224 (240)
+++|.|+|.|-+|++++..|++.|+ +|+++|...... ....++. |+.+..+. ...+.+. .+|.||.
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~~~----~~~~l~~-g~~~~~~~-----~~~~~~~---~~d~vv~ 71 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRITPP----GLDKLPE-NVERHTGS-----LNDEWLL---AADLIVA 71 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCCch----hHHHHhc-CCEEEeCC-----CCHHHhc---CCCEEEE
Confidence 6789999999999999999999999 899999765321 1112333 77766543 1222232 3788888
Q ss_pred ec
Q psy16201 225 SN 226 (240)
Q Consensus 225 s~ 226 (240)
|.
T Consensus 72 sp 73 (438)
T PRK03806 72 SP 73 (438)
T ss_pred CC
Confidence 74
No 336
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.66 E-value=0.029 Score=53.69 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccc-------c-----chHHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN-------V-----SPRIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~-------~-----~~~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..+.+.|.++|++++....+.... . ....+.+.|+.+.++.
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~ 350 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNV 350 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEecc
Confidence 468999999999999999999999864688877655432111 0 1223456788887765
No 337
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.61 E-value=0.017 Score=47.97 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=30.1
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|||+|-+++.+|..|++.|. +|+++=|.+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCC
Confidence 457999999999999999999999997 899998764
No 338
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.61 E-value=0.026 Score=45.03 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|+|-+|-++++.|...|.++|+|+.|..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4589999999999999999999999995699999864
No 339
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=95.61 E-value=0.012 Score=59.77 Aligned_cols=65 Identities=18% Similarity=0.433 Sum_probs=50.5
Q ss_pred CCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 29 TLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 29 ~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
-++..+...++++|+.|+ -|+.+||.+..+...++...+|++... .. ++..| -.|. .|++.|+.+
T Consensus 393 ~~s~eEl~~eadrCI~CG--~Cv~aCP~~l~i~~~I~~a~~G~~~~l-~~------l~~~C-t~CG---~CeeVCPtg 457 (781)
T PRK00941 393 LPTDEELKELAKKCTECG--WCVRVCPNELPIPEAMEAAAKGDLSKL-ED------LYDKC-IGCG---RCEQVCPKN 457 (781)
T ss_pred cCcHHHHHHhhhhCcCCC--CccccCCCCcchhHHHHHHhcCChhhh-hh------hhhhc-cchh---HHhhhCCCC
Confidence 346788999999999999 699999999999999999888876431 11 23445 4666 599999964
No 340
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.015 Score=53.87 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...|.|||+|.+|-.+||.++++|+ .|.+||-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCC-cEEEEEcccc
Confidence 4579999999999999999999999 7999998763
No 341
>KOG1298|consensus
Probab=95.59 E-value=0.015 Score=54.74 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|.+|.+.|+.|++.|- +|+|+||...
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERDl~ 79 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGR-RVHVIERDLS 79 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCc-EEEEEecccc
Confidence 34579999999999999999999999 8999999864
No 342
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.58 E-value=0.032 Score=53.00 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=47.9
Q ss_pred eEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201 147 KIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS 225 (240)
Q Consensus 147 ~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s 225 (240)
++.+||.|-+|++ +|..|+++|+ +|+++|..... ....++..|+.+..+. +.+.+. .+|.|++|
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~-~v~~~D~~~~~-----~~~~l~~~gi~~~~g~------~~~~~~---~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY-QVSGSDIAENA-----TTKRLEALGIPIYIGH------SAENLD---DADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC-eEEEECCCcch-----HHHHHHHCcCEEeCCC------CHHHCC---CCCEEEEC
Confidence 4789999999998 8999999999 79999976543 2234666788876542 223332 38999988
Q ss_pred c
Q psy16201 226 N 226 (240)
Q Consensus 226 ~ 226 (240)
.
T Consensus 66 p 66 (448)
T TIGR01082 66 A 66 (448)
T ss_pred C
Confidence 4
No 343
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.55 E-value=0.016 Score=57.49 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|++|+.+|..++++|. +|+++|+..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~-~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGA-KTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCC-CEEEEeccc
Confidence 69999999999999999999999 799999863
No 344
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=95.55 E-value=0.013 Score=56.21 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=35.0
Q ss_pred hhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHH
Q psy16201 37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77 (240)
Q Consensus 37 ~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~ 77 (240)
.+...|+.|+ -|+.+||.++.+-.+++++..+++++|-+
T Consensus 371 ~~~~~CI~Cg--~C~~vCP~~L~P~~l~ra~~~~d~~~~e~ 409 (448)
T PRK05352 371 GSERAMVPIG--NYERVMPLDILPTQLLRALIVGDTDEAQA 409 (448)
T ss_pred CCCcceeecC--cHhhcCCCCCCHHHHHHHHHcCCHHHHHH
Confidence 4567899999 69999999999999999999999988754
No 345
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.52 E-value=0.016 Score=56.21 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||+||..++ |. +|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~-~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PR-PVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cC-CEEEEECCCC
Confidence 569999999999999999986 67 7999999875
No 346
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.50 E-value=0.02 Score=56.43 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
...+|+|||+|.+||.||..++.+|. +|.++||...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGL-KVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCC-cEEEEEcccc
Confidence 35689999999999999999999999 8999999874
No 347
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.50 E-value=0.11 Score=39.53 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=49.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEEEEe
Q psy16201 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWVYYS 225 (240)
Q Consensus 148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V~~s 225 (240)
|+|+|.|..|...+..|.+.+. +|+++|..+.- ...++..++.+..|.. .+.+.|.+ .+..++|+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~------~~~~~~~~~~~i~gd~----~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPER------VEELREEGVEVIYGDA----TDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHH------HHHHHHTTSEEEES-T----TSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHH------HHHHHhcccccccccc----hhhhHHhhcCccccCEEEEc
Confidence 6899999999999999999887 79999977532 2334556777776653 23333332 2246777777
Q ss_pred cccchhh
Q psy16201 226 NCKVLSN 232 (240)
Q Consensus 226 ~~~~~~~ 232 (240)
+.....+
T Consensus 70 ~~~d~~n 76 (116)
T PF02254_consen 70 TDDDEEN 76 (116)
T ss_dssp SSSHHHH
T ss_pred cCCHHHH
Confidence 6555443
No 348
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.49 E-value=0.017 Score=52.21 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=30.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|+|||+|..|.+.|..|+++|+ +|++||+.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999999 899999875
No 349
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.47 E-value=0.014 Score=55.21 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=46.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC-------------CCcEEEEecCCCc--c----ccccchHHHhccCceEEeCCccC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG-------------YDDITIYEKNTYD--M----VTNVSPRIVKGTTSRHLYGPEQG 205 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G-------------~~~V~v~e~~~~~--~----~~~~~~~~~~~~gv~~~~~~~vg 205 (240)
-..|+|+|+|++|...|-.|+.+- . +|+++|+.+.- . +..+..+.++++||++.++..|-
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~-~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt 233 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSEL-RVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT 233 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCcccc-EEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceE
Confidence 357999999999999987765531 3 69999998852 1 44455678899999999988664
No 350
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.45 E-value=0.019 Score=54.65 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
..+|+|||+||+|..+|.. ..|. +|.++|+...||
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~-~V~lie~~~~GG 36 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADK-RIAIVEKGTFGG 36 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCC-eEEEEeCCCCCC
Confidence 4689999999999988654 4699 899999977665
No 351
>PRK07846 mycothione reductase; Reviewed
Probab=95.41 E-value=0.02 Score=54.63 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=28.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~ 182 (240)
.+|+|||+||+|.++|.. +.|. +|.++|+...||
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~-~V~lie~~~~GG 35 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADK-RIAIVEKGTFGG 35 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCC-eEEEEeCCCCCC
Confidence 479999999999988865 4699 899999977665
No 352
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.39 E-value=0.024 Score=53.72 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=31.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~ 180 (240)
.++|+|||+|.+|+.++..|.++- + +|+++|+++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCc
Confidence 579999999999999999999974 8 7999999884
No 353
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.39 E-value=0.02 Score=51.17 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.1
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|..|...|..|+++|+ +|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 479999999999999999999999 7999998753
No 354
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.022 Score=49.56 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=31.4
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++++|+|+|..|.+.|..|.+.|+ +|+++|+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH
Confidence 479999999999999999999999 8999998763
No 355
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.044 Score=52.13 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
.+++|.|+|.|-+|+++|.+|.++|+ +|+++|...... ..++..|+++.. ...+.+. .+|.|+
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~------~~l~~~g~~~~~-------~~~~~~~---~~d~vv 70 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASR------AKAAAAGITTAD-------LRTADWS---GFAALV 70 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhH------HHHHhcCccccC-------CChhHHc---CCCEEE
Confidence 46799999999999999999999999 799999653211 123445665321 1122232 489999
Q ss_pred Eec
Q psy16201 224 YSN 226 (240)
Q Consensus 224 ~s~ 226 (240)
.|.
T Consensus 71 ~sp 73 (460)
T PRK01390 71 LSP 73 (460)
T ss_pred ECC
Confidence 885
No 356
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.022 Score=52.37 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-++|+|||+|..|..-|..++..|+ +|++||..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 4689999999999999999999999 899999875
No 357
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.32 E-value=0.044 Score=56.09 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=49.6
Q ss_pred CeEEEECCChhHHHH-HHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201 146 TKIALIGCGPASLSC-ATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY 224 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~-a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~ 224 (240)
++|.|+|.|-+|+++ |..|+++|+ +|++.|...... ...++..|+.+..+.. .+.+. .+|.|++
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~-~V~~sD~~~~~~-----~~~L~~~gi~~~~g~~------~~~~~---~~d~vV~ 69 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGY-SVSGSDLSEGKT-----VEKLKAKGARFFLGHQ------EEHVP---EDAVVVY 69 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCC-eEEEECCCCChH-----HHHHHHCCCEEeCCCC------HHHcC---CCCEEEE
Confidence 479999999999999 999999999 799999765432 2236667888876541 13332 3899998
Q ss_pred ec
Q psy16201 225 SN 226 (240)
Q Consensus 225 s~ 226 (240)
|.
T Consensus 70 Sp 71 (809)
T PRK14573 70 SS 71 (809)
T ss_pred CC
Confidence 85
No 358
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.29 E-value=0.018 Score=43.79 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=31.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-++++|+|||+|..|..-+..|.+.|. +|+|+....
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 358899999999999999999999999 899998664
No 359
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.27 E-value=0.013 Score=56.14 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=35.4
Q ss_pred hhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHH
Q psy16201 37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78 (240)
Q Consensus 37 ~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~ 78 (240)
.+...|+.|+ -|+.+||+++.+..+++++..+|+++|.++
T Consensus 370 ~~~~aCI~CG--~C~~vCPm~L~P~~L~~a~~~~d~d~a~~l 409 (447)
T TIGR01936 370 GGERAMIPIG--IYERVMPLDIPPTLLLKALIAGDFDKAQRL 409 (447)
T ss_pred CCccceeECC--hHhhcCCCCCCHHHHHHHHHcCCHHHHHHC
Confidence 4566799999 699999999999999999999999987554
No 360
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.26 E-value=0.05 Score=54.41 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=40.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..|.+.|.++|+++.+.....+..... ......|++|.++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~ 382 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELA 382 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEecc
Confidence 468999999999999999999999974699998765422111111 11134677776654
No 361
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.24 E-value=0.02 Score=51.59 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201 155 PASLSCATFLSRMGYDDITIYEKNTYDMV 183 (240)
Q Consensus 155 ~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~ 183 (240)
++||+||+.|+++|+ +|+|||+.++.|.
T Consensus 1 iaGL~aA~~L~~~G~-~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGY-DVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhCCC-CEEEEEcCCCCCc
Confidence 589999999999999 8999999997553
No 362
>PRK04148 hypothetical protein; Provisional
Probab=95.23 E-value=0.023 Score=45.85 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++++|++||.| +|...|..|++.|+ +|+.+|.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH
Confidence 35789999999 99999999999999 8999997764
No 363
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.023 Score=51.06 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=31.4
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|..|...|..+++.|+ +|++||..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 489999999999999999999999 8999998764
No 364
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.20 E-value=0.019 Score=55.71 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=29.6
Q ss_pred eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~ 179 (240)
+++|||+|.+|+.+|..|++.| + +|.|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~-~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSN-SVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCC-eEEEEecCC
Confidence 4799999999999999999998 8 799999975
No 365
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.026 Score=50.44 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|+|||+|..|.+.|..|++.|+ +|+++|...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 489999999999999999999999 799999875
No 366
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.10 E-value=0.032 Score=44.21 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+++|+|+|+|-.|...|..|++.|..+++++|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 57999999999999999999999987899999765
No 367
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.08 E-value=0.032 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-++|+|||+|..|...|..|+++|+ +|+++|+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 3589999999999999999999999 799999875
No 368
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.06 E-value=0.039 Score=45.54 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=29.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
...+|+|+|+|.+|..|+..|...|+ +|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCH
Confidence 35799999999999999999999999 899999754
No 369
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.97 E-value=0.031 Score=50.06 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.2
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|..|...|..|++.|+ +|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHH
Confidence 579999999999999999999999 8999998753
No 370
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.95 E-value=0.063 Score=53.59 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc--cccchHHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV--TNVSPRIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~--~~~~~~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..+.+.|.++|+++.+.+.... +......+.+.|++|.++.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~ 527 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNV 527 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEecc
Confidence 4689999999999999999999999756999887653211 1111123456777776654
No 371
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.90 E-value=0.11 Score=48.03 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+++|+|||+|-.|..+|..|++.|+.+++|+|...
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567999999999999999999999987899999875
No 372
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.80 E-value=0.086 Score=50.55 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccccc--chHHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNV--SPRIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~--~~~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..+.+.|.++|+|+++.+...+... .-..+.+.|+.|.++.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~ 341 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNV 341 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecC
Confidence 4689999999999999999999999636999998654221110 1122346677776664
No 373
>KOG1335|consensus
Probab=94.80 E-value=0.038 Score=52.11 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=33.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+.+|+|||+||.|..+|...++.|+ ....+|++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl-kTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL-KTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc-eeEEEeccCc
Confidence 57899999999999999999999999 7999999764
No 374
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.80 E-value=0.051 Score=44.71 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
-.+++|+|||+|..|..-+..|.+.|+ +|+|+...
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence 568999999999999999999999999 89999533
No 375
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.76 E-value=0.04 Score=53.25 Aligned_cols=36 Identities=39% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYD 181 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~ 181 (240)
++++-|||+|+++|++|.+|-|- |- +|+|+|+.+..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~-nIhIlE~~~~~ 41 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGE-NIHILEELDVP 41 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCcc-ceEEEeCCCCC
Confidence 57889999999999999999885 45 89999998853
No 376
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=94.74 E-value=0.042 Score=50.88 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=29.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+.+|+|||+|.+|++|+..|.++|. ++.|+-+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk-~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGK-RCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCC-cEEEEeCCh
Confidence 3579999999999999999999999 677776543
No 377
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.58 E-value=0.004 Score=60.93 Aligned_cols=41 Identities=37% Similarity=0.790 Sum_probs=34.0
Q ss_pred ccccCcccccccCCChhhhHhhhcccCcCCC----CccccCCCCCC
Q psy16201 17 SLVNNFDDIKHTTLSERGALKEASRCLKCAD----APCQKSCPTQI 58 (240)
Q Consensus 17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~----~~C~~aCP~~~ 58 (240)
++..+|.++ ...+++.++..++.||+.|.. ..|+..||.+.
T Consensus 482 ~r~~~f~~~-~~~~~~~~~~~~~~rCl~C~~c~~C~~C~~~Cp~~a 526 (564)
T PRK12771 482 ERVGDFDEV-LGGLTEEEARQEAARCLSCGNCFECDNCYGACPQDA 526 (564)
T ss_pred HHhcChhhh-hccCChhhhhhhcccCcccccccccchhhhhCChhh
Confidence 467889987 779999999999999999931 35999999764
No 378
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.53 E-value=0.21 Score=47.05 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=46.5
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS 225 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s 225 (240)
++|+|+|+|..|...|..|.+.|+ .|+++|++... .....+..++++..+... ....++.+. ....++|+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~-----~~~~~~~~~~~~~~gd~~-~~~~l~~~~-~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEER-----LRRLQDRLDVRTVVGNGS-SPDVLREAG-AEDADLLIAV 72 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHH-----HHHHHhhcCEEEEEeCCC-CHHHHHHcC-CCcCCEEEEe
Confidence 379999999999999999999999 79999986431 111112245665554321 111122221 1246777776
Q ss_pred cccc
Q psy16201 226 NCKV 229 (240)
Q Consensus 226 ~~~~ 229 (240)
+.+.
T Consensus 73 ~~~~ 76 (453)
T PRK09496 73 TDSD 76 (453)
T ss_pred cCCh
Confidence 5443
No 379
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.51 E-value=0.17 Score=47.86 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=30.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|.|+|+|..||+.|.-|++.|| +|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH-eVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH-EVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 379999999999999999999999 799999876
No 380
>KOG1336|consensus
Probab=94.51 E-value=0.069 Score=51.26 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=47.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v 204 (240)
+.+|+++|+|..|+.+|..|..+++ +||++++.+.... ...+...+++.|+.|.+++.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~-~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAK-SVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCc-eEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence 5679999999999999999999999 8999999886432 223345668899999887743
No 381
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.50 E-value=0.099 Score=54.94 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+-+|..+.+.|.+.|+++.+........... +.+.+.|+.|.++.
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~ 630 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLH 630 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecC
Confidence 468999999999999999999999985588777654322211111 23456677776654
No 382
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.50 E-value=0.059 Score=44.17 Aligned_cols=33 Identities=33% Similarity=0.686 Sum_probs=28.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|.|||.|..|...|..|.++|+ +|++||+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccch
Confidence 489999999999999999999999 899999775
No 383
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.48 E-value=0.091 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|+|||+|..|+-+|..+.+.|. +|+++.+..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEecC
Confidence 46899999999999999999999999 799998765
No 384
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=94.48 E-value=0.086 Score=49.20 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=47.2
Q ss_pred ccCcCCCCccccCCCCCCChHHHHHHHhc----CCHHHH---HHHHHhh-CCCCcccc--ccCCCCCchhhhccccccCC
Q psy16201 41 RCLKCADAPCQKSCPTQIDIKSFITSISH----KNYYGA---AKAIFSD-NPLGLTCG--MVCPTSDLCMGGCNLYAAEE 110 (240)
Q Consensus 41 rC~~c~~~~C~~aCP~~~di~~~i~~i~~----g~~~~A---~~~i~~~-np~p~~cg--rvC~~~~~Ce~~C~r~~~~~ 110 (240)
.|..|. .|+- ||.++|||.+.++... ++.+.| +..+... --||+--| -.|.....|+..||.
T Consensus 294 ~Ct~C~--yC~P-CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CPq----- 365 (391)
T COG1453 294 PCTGCR--YCLP-CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCPQ----- 365 (391)
T ss_pred CCcccc--ccCc-CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccCccCCCCcccccccchhhhhhhcCCC-----
Confidence 499998 7888 9999999999887643 666555 2333332 11333322 233344579999995
Q ss_pred CccccchhhHHHHH
Q psy16201 111 GPINIGGLQQFATE 124 (240)
Q Consensus 111 ~pV~I~~l~r~~~~ 124 (240)
.+.|..+-+-+.+
T Consensus 366 -~l~Ip~~Lk~v~~ 378 (391)
T COG1453 366 -HLDIPELLKEVHE 378 (391)
T ss_pred -cCcHHHHHHHHHH
Confidence 3557766555544
No 385
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.48 E-value=0.064 Score=42.77 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
|+|+|+|-.|...|+.|++.|+ +|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc
Confidence 7899999999999999999999 899998765
No 386
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.45 E-value=0.051 Score=50.62 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=32.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+|+|||+|.+||.+|..|+..|. +|.|+|+...
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~-~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGK-RVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCc-eEEEEccccc
Confidence 5689999999999999999999999 8999998763
No 387
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.45 E-value=0.051 Score=48.37 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=30.9
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++|+|||+|..|...|..|++.|+ +|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHH
Confidence 479999999999999999999999 7999997653
No 388
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.37 E-value=0.049 Score=51.60 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=31.0
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|+|||.|..|+..|..|+++|+ +|++||+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 589999999999999999999999 899999865
No 389
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.34 E-value=0.069 Score=45.69 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
...+|+|||+|-.|...|..|++.|+.+++++|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999999999999999999998569999987
No 390
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=0.063 Score=51.63 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.3
Q ss_pred CeEEEECCChhHHHHHHHHHHcC-CC-cEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMG-YD-DITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G-~~-~V~v~e~~~~ 180 (240)
++|||||+|++|+.+|.+|.+.- .. .|.|||+...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 58999999999999999998852 21 4999998875
No 391
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.25 E-value=0.32 Score=35.69 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=47.7
Q ss_pred eEEEECCChhHHHHHHHHHHcC---CCcEEEE-ecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201 147 KIALIGCGPASLSCATFLSRMG---YDDITIY-EKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~-e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V 222 (240)
+|.|||+|-.|.+.+.-|.+.| + +|+++ ++++.. ..+..+..++.+.. .+..++.+. .|.|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~~--advv 65 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEK-----AAELAKEYGVQATA-------DDNEEAAQE--ADVV 65 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHH-----HHHHHHHCTTEEES-------EEHHHHHHH--TSEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHH-----HHHHHHhhcccccc-------CChHHhhcc--CCEE
Confidence 6899999999999999999999 8 79855 766532 12233445555442 133444444 8999
Q ss_pred EEec-ccchhhHHH
Q psy16201 223 YYSN-CKVLSNTRT 235 (240)
Q Consensus 223 ~~s~-~~~~~~l~~ 235 (240)
|++- .+....+-.
T Consensus 66 ilav~p~~~~~v~~ 79 (96)
T PF03807_consen 66 ILAVKPQQLPEVLS 79 (96)
T ss_dssp EE-S-GGGHHHHHH
T ss_pred EEEECHHHHHHHHH
Confidence 9994 555544443
No 392
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.23 E-value=0.079 Score=45.20 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|.|-.|..+|..|.+.|+ +|+++|.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINE 61 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 457899999999999999999999999 799999764
No 393
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.20 E-value=0.1 Score=47.73 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHH----cC--CCcEEEEecCCC-c----cccccchHHHhccCceEEeCCccCcc----c
Q psy16201 144 PDTKIALIGCGPASLSCATFLSR----MG--YDDITIYEKNTY-D----MVTNVSPRIVKGTTSRHLYGPEQGSF----L 208 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~----~G--~~~V~v~e~~~~-~----~~~~~~~~~~~~~gv~~~~~~~vg~~----i 208 (240)
..++|+|||+|++|+..|..|++ +| . +|+++..... . .+.....+.+++.|+++.++..+-.. +
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~-~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v 222 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRG-QVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGAL 222 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCc-eEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeE
Confidence 35799999999999999998875 35 4 6999943221 1 12223345667889999887644221 1
Q ss_pred CHHHHHhhcCCcEEEEeccc
Q psy16201 209 NIELISEKTAYQWVYYSNCK 228 (240)
Q Consensus 209 ~~e~L~~~s~~d~V~~s~~~ 228 (240)
.+++=.. -.+|.|+++...
T Consensus 223 ~~~~g~~-i~~D~vi~a~G~ 241 (364)
T TIGR03169 223 ILADGRT-LPADAILWATGA 241 (364)
T ss_pred EeCCCCE-EecCEEEEccCC
Confidence 1110001 136888888643
No 394
>KOG1335|consensus
Probab=94.16 E-value=0.036 Score=52.28 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=48.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc-----ccccchHHHhccCceEEeCCcc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM-----VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~-----~~~~~~~~~~~~gv~~~~~~~v 204 (240)
-.++.+|||+|..||..+-.-.+.|- +||++|-.+. ++ +.....+.+...|+.|.+++.+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGs-eVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGS-EVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCC-eEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 35789999999999999999899999 7999998774 22 3334567788899999888754
No 395
>KOG0404|consensus
Probab=94.14 E-value=0.052 Score=47.94 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=30.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+||++-++|.++++... +-++||.--
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarael-kPllfEG~~ 41 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAEL-KPLLFEGMM 41 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhccc-CceEEeeee
Confidence 4589999999999999999999999 799999743
No 396
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.12 E-value=0.088 Score=47.64 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
...+|+|||+|-.|...|..|++.|+ +|+++.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 34689999999999999999999999 799998764
No 397
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.12 E-value=0.064 Score=52.27 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+.+|+|+|+|++|+.++..+...|. .|+++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 457899999999999999999999999 799999765
No 398
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=94.11 E-value=0.0059 Score=41.05 Aligned_cols=56 Identities=20% Similarity=0.557 Sum_probs=29.2
Q ss_pred hhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 38 EASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 38 ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
|.++|+.|+ -|+.+||+......+....+.+......+.. ..| ..|- .|+..||.+
T Consensus 1 d~~~Ci~Cg--~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~-------~~C-~~C~---~C~~~CP~~ 56 (57)
T PF13183_consen 1 DLSKCIRCG--ACTSVCPVYRNTGRFSHPPRDRRSAVLREEA-------WSC-TTCG---ACSEVCPVG 56 (57)
T ss_dssp HHHC--S-S--HHHHCSHHHHHHHHHHTSTTS--HHHHHHHH-------GG---------HHHHH-TT-
T ss_pred CHHHccCcc--ChHHHChhhhcccccccCcchhHHHhhcccc-------cCC-cCcC---CccCcCccc
Confidence 467899998 7999999877777666555555444211111 333 3555 699999853
No 399
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.08 E-value=0.074 Score=47.22 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=29.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCh
Confidence 69999999999999999999999 799999843
No 400
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.05 E-value=0.072 Score=47.96 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 3589999999999999999999999 799999765
No 401
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.04 E-value=0.092 Score=47.01 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=31.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 3579999999999999999999999 899999875
No 402
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.02 E-value=0.061 Score=52.72 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
....+++|||+|.+|..+|..|+..|+ +|.|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~-~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCC-eEEEEeCCC
Confidence 446799999999999999999999999 899999884
No 403
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.95 E-value=0.34 Score=47.49 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWV 222 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V 222 (240)
.-+|+|+|.|..|...|..|.++|+ +|+++|+++.- -+..++.|.....|.. -+.+.|.+ -+..|+|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~------~~~~~~~g~~~i~GD~----~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTR------VDELRERGIRAVLGNA----ANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHH------HHHHHHCCCeEEEcCC----CCHHHHHhcCccccCEE
Confidence 4689999999999999999999999 79999987531 1223345666666552 12222221 1135666
Q ss_pred EEecccch
Q psy16201 223 YYSNCKVL 230 (240)
Q Consensus 223 ~~s~~~~~ 230 (240)
+.+..+..
T Consensus 486 iv~~~~~~ 493 (558)
T PRK10669 486 LLTIPNGY 493 (558)
T ss_pred EEEcCChH
Confidence 66654443
No 404
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.95 E-value=0.1 Score=54.65 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCc
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE 203 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~ 203 (240)
.+++|+|||+|+.|+..|..|++.|.+.|+|+|..+... ....+.++..|++++.+..
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--~~l~~~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--PEARAEARELGIEVLTGHV 373 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--HHHHHHHHHcCCEEEcCCe
Confidence 468999999999999999999999953689999765431 1133456777888877653
No 405
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.95 E-value=0.085 Score=50.14 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|.|+.|+.+|..+...|. +|+++|..+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 358899999999999999999999999 799998765
No 406
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.92 E-value=0.092 Score=47.25 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|+|+|+|-+|.++++.|++.|..+|+|++|..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 468999999999999999999999986799999874
No 407
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.92 E-value=0.33 Score=42.45 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=49.2
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW 221 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~ 221 (240)
...+++|+|||||..++.=+..|.+.|. +|+|+-..-.+.+ ........+++... ....++|. +++.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el----~~l~~~~~i~~~~r-----~~~~~dl~---g~~L 88 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEF----LDLKKYGNLKLIKG-----NYDKEFIK---DKHL 88 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHH----HHHHhCCCEEEEeC-----CCChHHhC---CCcE
Confidence 3568899999999999999999999999 7999965433221 11222233454432 24555553 4888
Q ss_pred EEEeccc
Q psy16201 222 VYYSNCK 228 (240)
Q Consensus 222 V~~s~~~ 228 (240)
||.++.+
T Consensus 89 ViaATdD 95 (223)
T PRK05562 89 IVIATDD 95 (223)
T ss_pred EEECCCC
Confidence 8888643
No 408
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.90 E-value=0.071 Score=50.21 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||.|..|+..|..|++.|+ +|++||+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCH
Confidence 69999999999999999999999 799999865
No 409
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.89 E-value=0.086 Score=46.97 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
+|+|+|+|..|...|..|++.|+ +|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999999 7999997
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.87 E-value=0.091 Score=49.09 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
...+|+|+|+|.+|+.++..|.+.|. +|+++|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 45679999999999999999999999 799999764
No 411
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=93.87 E-value=0.29 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.812 Sum_probs=19.8
Q ss_pred hhhhHhhhcccCcCCCCccccCCCCCC
Q psy16201 32 ERGALKEASRCLKCADAPCQKSCPTQI 58 (240)
Q Consensus 32 ~~~~~~ea~rC~~c~~~~C~~aCP~~~ 58 (240)
..+...+...|+.|+ -|+.+||+-.
T Consensus 125 ~~~~~~~~~~Ci~CG--~C~~~CP~~~ 149 (486)
T PRK06259 125 DIEDIKKLRGCIECL--SCVSTCPARK 149 (486)
T ss_pred HHHHHhCchhcccCc--cccccCCCCc
Confidence 334556778999999 7999999764
No 412
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.87 E-value=0.097 Score=47.38 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=32.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|.|+|.|.+|..++..|.+.|. +|+++++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 57899999999999999999999999 899999875
No 413
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.15 Score=46.42 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhcc-CceEEeCCc
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT-TSRHLYGPE 203 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~-gv~~~~~~~ 203 (240)
..+++|+|||+|-+++.-|.+|++.+- +|+++=|.+.......+.+.+.+. .+.+.++..
T Consensus 141 ~~~k~v~ViGgG~sAve~Al~L~~~a~-~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~ 201 (305)
T COG0492 141 FKGKDVVVIGGGDSAVEEALYLSKIAK-KVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTV 201 (305)
T ss_pred ccCCeEEEEcCCHHHHHHHHHHHHhcC-eEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCc
Confidence 467899999999999999999999999 799998887543222233333333 666666643
No 414
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.84 E-value=0.071 Score=51.06 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=30.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|+|+|.|.+|.+++..|. +|+ +|+++|...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~-~v~v~D~~~ 38 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKY-DVIVYDDLK 38 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCC-EEEEECCCC
Confidence 4689999999999999999998 499 899999543
No 415
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.83 E-value=0.086 Score=47.92 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=29.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~ 178 (240)
.+|+|||+|..|...|..|++.|+ +|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999999 79999975
No 416
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.78 E-value=0.094 Score=50.74 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=37.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGP 202 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~ 202 (240)
+|+|||+|.+||++|..|.+. + +|+|+-|...+. ...++..-|+...++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~-~V~vltk~~~~~----~sS~~AQGGIAa~~~~ 58 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-F-RVTVLTKGPLGE----SSSYWAQGGIAAALSE 58 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-C-cEEEEeCCCCCC----ccchhhcCceEeeeCC
Confidence 799999999999999999888 8 799999887653 1223334455544433
No 417
>KOG4254|consensus
Probab=93.78 E-value=0.064 Score=51.48 Aligned_cols=37 Identities=27% Similarity=0.559 Sum_probs=33.9
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
++..+++|||+|.-||.+|.+|+|.|- +|.|+|++..
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~-~V~vlerrhv 48 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQ-SVAVLERRHV 48 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCc-ceEEEEEeee
Confidence 557799999999999999999999999 8999999854
No 418
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.70 E-value=0.12 Score=45.01 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCC--cEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYD--DITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~--~V~v~e~~~ 179 (240)
..+++|+|+|+|-+|..+|..|.+.|.+ +|+++|+..
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 3568999999999999999999999996 699999983
No 419
>KOG2853|consensus
Probab=93.69 E-value=0.077 Score=49.51 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=30.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~ 179 (240)
....|+|||+|.+|.+.|+.|.++ |+ +|.|+|+.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl-~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGL-NVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCc-eEEEEeccC
Confidence 456899999999999999998663 68 899999987
No 420
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.67 E-value=0.083 Score=51.15 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=30.7
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
++|+|||+|..|...|..|++.|+ +|++||+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999999 899999875
No 421
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.66 E-value=0.2 Score=49.98 Aligned_cols=58 Identities=10% Similarity=0.215 Sum_probs=41.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchH---HHhccCceEEeCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPR---IVKGTTSRHLYGP 202 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~---~~~~~gv~~~~~~ 202 (240)
.+++|+|||+|..|+.+|..+.+.|.++|+++.+.+...... .+. ...+.|++|+++.
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~~~a~~eGv~~~~~~ 510 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEVVNAREEGVEFQFNV 510 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHHHHHHHcCCeEEecc
Confidence 468999999999999999999999964799998765322111 111 2245677777654
No 422
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.64 E-value=0.11 Score=46.91 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+.+|.|||+|-.|.+.|..|++.|+ +|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 5689999999999999999999999 799999875
No 423
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.091 Score=49.13 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
-.+|+|+|||+|-+|+.+|..|+---. .||++|=.+.
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv~-hVtllEF~~e 388 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE 388 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhhh-eeeeeecchh
Confidence 468999999999999999999976544 6999986654
No 424
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.50 E-value=0.12 Score=46.70 Aligned_cols=36 Identities=14% Similarity=0.377 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+++|+|+|.|..|...|..|...|+ +|+++++..
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~ 184 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS 184 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 357899999999999999999999999 899999875
No 425
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.46 E-value=0.28 Score=44.45 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=33.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+.+|+|+|+|-.|..+|..|+..|..+++|+|....
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v 54 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC 54 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence 4679999999999999999999999888999997653
No 426
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.43 E-value=0.13 Score=43.81 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=33.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+++|+|||+|-.|..+|..|++.|..+++++|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3578999999999999999999999987899999764
No 427
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.43 E-value=0.13 Score=46.66 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 3589999999999999999999999 799999854
No 428
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=93.42 E-value=0.1 Score=42.09 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=34.2
Q ss_pred cccCcCCCCccccCCCCC----CChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 40 SRCLKCADAPCQKSCPTQ----IDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 40 ~rC~~c~~~~C~~aCP~~----~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
.+|++|+ -|+.+||+. ..+..+++.+..|...+. +.+ .....| -.|- .|+..|+.+
T Consensus 2 ~~Ci~CG--~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~---~~~--~~~~~C-~~Cg---~C~~~CP~~ 61 (144)
T TIGR03290 2 KACYQCG--TCTGSCPSGRRTSYRTRLIIRKALLGLKDEV---ISD--DDLWMC-TTCY---TCQERCPRD 61 (144)
T ss_pred ccccCCC--CCcCcCCCccccCCCHHHHHHHHHccchhhh---ccC--CCCCcC-cCcC---chhhhcCCC
Confidence 5899999 799999975 344455555555532211 111 122334 4565 599999974
No 429
>KOG2960|consensus
Probab=93.41 E-value=0.042 Score=48.19 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM 182 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~ 182 (240)
..+|+|||+|.+||++||+.+++. . +|.|+|..-.+|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdl-kvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDL-KVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCc-eEEEEEeeecCC
Confidence 458999999999999999998765 5 799999876543
No 430
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.38 E-value=0.12 Score=46.30 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+.+|+|+|+|-.|..+|..|++.|..+++|+|...
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3577999999999999999999999976899999765
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.22 E-value=0.12 Score=50.31 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
-++|+|||+|..|...|..|++.|+ .|+++|+...
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 3579999999999999999999999 7999998753
No 432
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.20 E-value=0.4 Score=47.79 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhh--cCCcEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEK--TAYQWV 222 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~--s~~d~V 222 (240)
..+|+|+|.|..|...|..|.++|+ +++++|+++.- -+..++.|....+|.. -..+.|.+. ...++|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~------v~~~~~~g~~v~~GDa----t~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDH------IETLRKFGMKVFYGDA----TRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHH------HHHHHhcCCeEEEEeC----CCHHHHHhcCCCcCCEE
Confidence 5689999999999999999999999 79999987531 1223446777766653 234444331 135677
Q ss_pred EEecccchh
Q psy16201 223 YYSNCKVLS 231 (240)
Q Consensus 223 ~~s~~~~~~ 231 (240)
+.+..+...
T Consensus 469 vv~~~d~~~ 477 (621)
T PRK03562 469 INAIDDPQT 477 (621)
T ss_pred EEEeCCHHH
Confidence 777655433
No 433
>PLN02785 Protein HOTHEAD
Probab=93.18 E-value=0.12 Score=51.30 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..+++|||+|.+|+.+|..|++ ++ +|.|+|+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~-~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NF-SVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CC-cEEEEecCCC
Confidence 4789999999999999999998 68 7999998863
No 434
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.14 E-value=0.25 Score=51.87 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~ 180 (240)
.+++|+|||+|..|+.+|..+.+. |.++|+++.+...
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 468999999999999999998887 5337999988753
No 435
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.09 E-value=0.15 Score=44.16 Aligned_cols=36 Identities=14% Similarity=0.445 Sum_probs=32.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+.+|+|||+|-.|...|..|++.|..+++++|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 467999999999999999999999988899998764
No 436
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.09 E-value=0.16 Score=44.77 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+++|+|||+|..|..+|..|++.|..+++++|...
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4578999999999999999999999987899999764
No 437
>KOG4716|consensus
Probab=93.09 E-value=0.12 Score=48.25 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=31.9
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
.+.+.+.+|||+|.+||+||..+++.|. +|.++|-
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~-kV~~lDf 50 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGA-KVACLDF 50 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCC-cEEEEee
Confidence 3567899999999999999999999999 7999984
No 438
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.09 E-value=0.15 Score=44.78 Aligned_cols=38 Identities=16% Similarity=0.452 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
-.+.+|+|+|+|-.|..+|..|++.|..+++++|....
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 34679999999999999999999999888999997653
No 439
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.08 E-value=0.11 Score=50.53 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
-++|+|||+|..|...|..|++.|+ .|+++|+...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 4689999999999999999999999 7999998763
No 440
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.07 E-value=0.26 Score=51.78 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~ 180 (240)
.+++|+|||+|..|+.+|..+.+. |.++|+++.+...
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 478999999999999999998886 8647999988763
No 441
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.084 Score=49.39 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITI 174 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v 174 (240)
+...+|.|||+||+|-++|.|.+|+|. +.-+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGi-RTGl 239 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGI-RTGL 239 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcc-hhhh
Confidence 445789999999999999999999998 4433
No 442
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.03 E-value=0.15 Score=45.83 Aligned_cols=32 Identities=34% Similarity=0.620 Sum_probs=29.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999999 799999864
No 443
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.03 E-value=0.16 Score=40.38 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=30.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|-.|...+..|++.|+.+++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 589999999999999999999987799999764
No 444
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.96 E-value=0.18 Score=41.99 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|||+|- +|..+|.+|.++|. +|++..+..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 4689999999996 69999999999999 799999874
No 445
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.94 E-value=0.16 Score=45.99 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.2
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|+|+|+|..|...|.+|++.|+ +|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEech
Confidence 479999999999999999999999 799999853
No 446
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=92.91 E-value=0.17 Score=48.87 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=31.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+++|+|||+|..|+.+|..+.+.|...|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 5689999999999999998888888647999987653
No 447
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.85 E-value=0.16 Score=48.19 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|.|+.|..+|..|...|. +|+++|..+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 458899999999999999999999999 899998765
No 448
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.73 E-value=0.26 Score=36.02 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~ 177 (240)
..+++++|+|.|-.|...+..|.+.|..+|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34679999999999999999999984337999987
No 449
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.72 E-value=0.67 Score=43.60 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=32.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..++|+|+|.|..|...+..|.+.|+ +|+++|+.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~ 264 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP 264 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 46789999999999999999999999 799999775
No 450
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.68 E-value=0.2 Score=43.20 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-...+|+|||+|-.|...|..|++.|..+++++|...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3567999999999999999999999986799999764
No 451
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.68 E-value=0.24 Score=45.90 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=28.6
Q ss_pred eEEEECCChhHHHHHHHHHHcC--------CCcEEEEecC
Q psy16201 147 KIALIGCGPASLSCATFLSRMG--------YDDITIYEKN 178 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G--------~~~V~v~e~~ 178 (240)
+|+|||+|..|-+.|..|+++| + +|+++.+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~-~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEE-SVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCc-eEEEEEec
Confidence 5899999999999999999999 8 79999874
No 452
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.64 E-value=0.2 Score=45.02 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=32.5
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|+|||+|-+|.++++.|++.|.++|+|+.|..
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 478999999999999999999999986799999864
No 453
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.64 E-value=0.54 Score=39.13 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=29.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+++++|+|=|..|-.+|..|+.+|. +|+|+|..+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP 56 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP 56 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence 458999999999999999999999999 899999887
No 454
>PRK08328 hypothetical protein; Provisional
Probab=92.50 E-value=0.2 Score=43.66 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=33.1
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+.+|+|+|+|-.|..+|..|++.|..+++++|...
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567999999999999999999999987899998665
No 455
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.48 E-value=0.14 Score=45.76 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=29.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|.|||.|..|...|..|++.|+ +|++|++..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999999 899999875
No 456
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.46 E-value=0.59 Score=46.43 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEE
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWV 222 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V 222 (240)
..+|+|+|.|..|...+..|.+.|+ +++++|.++.- -+..++.|....+|.. -+.+.|.+ -...++|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~------v~~~~~~g~~v~~GDa----t~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISA------VNLMRKYGYKVYYGDA----TQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHH------HHHHHhCCCeEEEeeC----CCHHHHHhcCCccCCEE
Confidence 4689999999999999999999999 79999977531 1233456777776652 22333332 1135677
Q ss_pred EEecccchhh
Q psy16201 223 YYSNCKVLSN 232 (240)
Q Consensus 223 ~~s~~~~~~~ 232 (240)
+.+..+...+
T Consensus 469 v~~~~d~~~n 478 (601)
T PRK03659 469 VITCNEPEDT 478 (601)
T ss_pred EEEeCCHHHH
Confidence 7776555443
No 457
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.43 E-value=0.18 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=29.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|..|.+.|..|++.|+ +|+++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 69999999999999999999999 799999854
No 458
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.36 E-value=0.36 Score=45.92 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=48.1
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh-hcCCcEE
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE-KTAYQWV 222 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~-~s~~d~V 222 (240)
.+++|+|||+|=.|--+|.+|.++|+..|+|.-|...- ..+..+..|.+ .+++++|.. ...+|.|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~er-----A~~La~~~~~~---------~~~l~el~~~l~~~DvV 242 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLER-----AEELAKKLGAE---------AVALEELLEALAEADVV 242 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHH-----HHHHHHHhCCe---------eecHHHHHHhhhhCCEE
Confidence 58899999999999999999999997688888766422 12222333422 244444332 2248988
Q ss_pred EEecccc
Q psy16201 223 YYSNCKV 229 (240)
Q Consensus 223 ~~s~~~~ 229 (240)
|.|+...
T Consensus 243 issTsa~ 249 (414)
T COG0373 243 ISSTSAP 249 (414)
T ss_pred EEecCCC
Confidence 8886554
No 459
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.36 E-value=0.4 Score=43.90 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=44.8
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201 147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223 (240)
Q Consensus 147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~ 223 (240)
+|+|.|+ |..|--++..|.+.|+ +|+|+|-...+-.+. +...-.+|..+. +...--++.+.+....|+|+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~-~vvV~DNL~~g~~~~-----v~~~~~~f~~gD-i~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGH-EVVVLDNLSNGHKIA-----LLKLQFKFYEGD-LLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCCHHH-----hhhccCceEEec-cccHHHHHHHHHhcCCCEEE
Confidence 6788877 9999999999999999 899999776553222 221114555544 22222344444444567665
No 460
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.34 E-value=0.2 Score=47.78 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|.|..|..+|..|...|. +|+++|..+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 358899999999999999999999999 899999765
No 461
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.32 E-value=0.21 Score=45.38 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|+|||+|..|..++..|..+|..+|+++++..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578999999999999999999887744799999764
No 462
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.28 E-value=0.23 Score=41.39 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||+|-.|...|..|++.|+.+++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999986699999765
No 463
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.26 E-value=0.2 Score=42.62 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+.+|+|+|+|..|...+..|++.|..+++++|....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4779999999999999999999999878999997653
No 464
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.25 E-value=0.19 Score=47.38 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.++|+|||.|.+|+++|..|.++|+ .|+++|....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 3589999999999999999999999 7999997643
No 465
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.22 E-value=0.2 Score=48.19 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|||+|.+|+..|..|++.+. +|+++.+..
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~a~-~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKVAK-EVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHhCC-eEEEEEeec
Confidence 468999999999999999999999988 799998754
No 466
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.21 E-value=0.2 Score=44.68 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=29.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|.|||.|..|.+.|..|.++|+ +|+++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999999 799999764
No 467
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=92.19 E-value=0.2 Score=47.92 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=34.3
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.-.+|+|+|||+|-+|...+..|++.|. +|+++=|.+.
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga-~vt~~qRs~~ 209 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPELAEVGA-SVTLSQRSPP 209 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHHHhcCC-eeEEEecCCC
Confidence 3578999999999999999999999997 8999988763
No 468
>KOG2404|consensus
Probab=92.16 E-value=0.18 Score=46.78 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.|+|||+|.+||+++-.+..+|- .|+++|++..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg-~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGG-IVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCC-eEEEEeccCC
Confidence 69999999999999999999988 7999999874
No 469
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.15 E-value=0.18 Score=51.03 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=31.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
-++|+|||+|..|...|..+++.|+ +|+++|....
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 3689999999999999999999999 8999998763
No 470
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.14 E-value=0.25 Score=44.58 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++|+|+|+|-++.++++.|++.|.++++|++|..
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 478999999999999999999999986799999864
No 471
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.12 E-value=0.31 Score=40.52 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.-.+++|.|||.|-.|...|..|...|. +|..|++...
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 3568999999999999999999999999 8999998875
No 472
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.05 E-value=0.26 Score=46.80 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|+|..|..++..|...|+.+|+++++..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 4578999999999999999999999975799998864
No 473
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.98 E-value=0.24 Score=44.93 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCC-CcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGY-DDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~-~~V~v~e~~~ 179 (240)
+|+|||+|..|.++|+.|+++|. ..|.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 79999999999999999999993 2799999865
No 474
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.96 E-value=0.21 Score=46.14 Aligned_cols=33 Identities=15% Similarity=0.463 Sum_probs=29.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|+|+||.||.++..+...|.+.|++.|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 899999999999998888888976788888765
No 475
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.96 E-value=0.22 Score=46.87 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=27.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|+|||.|..|+..|..++. || +|+++|...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~-~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NH-EVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CC-cEEEEECCH
Confidence 69999999999999987774 99 799999876
No 476
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.94 E-value=0.26 Score=41.96 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+.+|+|||+|-.|..+|..|++.|..+++++|...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 467999999999999999999999987899999765
No 477
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.91 E-value=0.21 Score=44.96 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+|.|||.|..|...|..|+++|+ +|++|++..
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 79999999999999999999999 799999865
No 478
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=91.91 E-value=0.22 Score=45.11 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.4
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+|++||-|..|...|..|.+.|| .|++|++.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChh
Confidence 379999999999999999999999 7999999863
No 479
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.89 E-value=0.26 Score=45.52 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-...+|+|||+|-.|..+|.+|++.|..+++++|...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3467999999999999999999999987899999864
No 480
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.85 E-value=0.26 Score=48.17 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
.+.+|+|+|+|+.|+.++..+...|. .|+++|.+..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence 46799999999999999999999999 7999997653
No 481
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.82 E-value=0.3 Score=40.87 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+++++|+|+ |..|...+..|++.|+ +|+++.|+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 4689999997 9999999999999999 899998763
No 482
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.79 E-value=0.4 Score=44.82 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.3
Q ss_pred CCCCeEEEEC-CChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIG-CGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG-~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
+..++|+||| .|..|-+.|..|.+.|+ .|+++++.+
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~ 132 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDD 132 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCc
Confidence 4568999999 89999999999999999 799999764
No 483
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=91.78 E-value=0.14 Score=44.39 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=20.2
Q ss_pred hhhHhhhcccCcCCCCccccCCCCCCC
Q psy16201 33 RGALKEASRCLKCADAPCQKSCPTQID 59 (240)
Q Consensus 33 ~~~~~ea~rC~~c~~~~C~~aCP~~~d 59 (240)
.....+...|+.|+ -|+.+||+...
T Consensus 131 ~~~~~~~~~Ci~CG--~C~~~CP~~~~ 155 (220)
T TIGR00384 131 REKLDQLSGCILCG--CCYSSCPAFWW 155 (220)
T ss_pred HHHHhhhhhccccc--cccccCCCCcc
Confidence 34556889999999 79999998743
No 484
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=91.73 E-value=0.096 Score=52.93 Aligned_cols=58 Identities=19% Similarity=0.482 Sum_probs=41.5
Q ss_pred hhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201 37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY 106 (240)
Q Consensus 37 ~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~ 106 (240)
.+...|+.|+ -|+.+||.++.+..+.+.+..+++..+..+ +. .-| --|. .|...|+-+
T Consensus 367 ~~e~~CI~CG--~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~----~~--~~C-ieCG---~C~~vCPs~ 424 (695)
T PRK05035 367 PPEQPCIRCG--ACADACPASLLPQQLYWFAKAEEHDKAQEY----NL--FDC-IECG---ACAYVCPSN 424 (695)
T ss_pred CchhhcCCcc--cHHHHCCccchhhhHHHhhhccccchhhhc----Ch--hhc-cccC---cccccCCCC
Confidence 4678899999 699999999988888777888888764322 11 123 2255 588888853
No 485
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=91.66 E-value=0.54 Score=41.67 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=46.5
Q ss_pred hhhHhhhcccCcCCCCccccCCCCCCChHHHH-----HHHhc------CC--HHHHHHHHHhhCCCCccccccCCCCCch
Q psy16201 33 RGALKEASRCLKCADAPCQKSCPTQIDIKSFI-----TSISH------KN--YYGAAKAIFSDNPLGLTCGMVCPTSDLC 99 (240)
Q Consensus 33 ~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i-----~~i~~------g~--~~~A~~~i~~~np~p~~cgrvC~~~~~C 99 (240)
.....+...|+.|+ -|..+||+....++|+ ..+.. ++ .++-++.+...+- -..| ..|- .|
T Consensus 145 ~~~~~~~~~CI~CG--~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g-~~~C-~~Cg---~C 217 (249)
T PRK08640 145 RQWAYELSKCMTCG--CCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGG-IADC-GNAQ---NC 217 (249)
T ss_pred HHHHhhhhhccCcC--cccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCC-eeCC-cCcC---cc
Confidence 34556788899999 7999999776533333 22221 32 2222222222111 1222 3444 59
Q ss_pred hhhccccccCCCcc-ccchhhHHHHHHHH
Q psy16201 100 MGGCNLYAAEEGPI-NIGGLQQFATEVFK 127 (240)
Q Consensus 100 e~~C~r~~~~~~pV-~I~~l~r~~~~~~~ 127 (240)
...|+.+.. +. .|..+++.+...+.
T Consensus 218 ~~vCPkgI~---~~~~I~~lr~~~~~~g~ 243 (249)
T PRK08640 218 VRVCPKGIP---LTTSIAAMNRETTKQSF 243 (249)
T ss_pred cccCCCCCC---HHHHHHHHHHHHHHHHH
Confidence 999997531 22 47777777665443
No 486
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.64 E-value=0.32 Score=44.22 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=29.8
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|+|||+|..|...|+.|+.+|+.+|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4899999999999999999998863599999854
No 487
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.62 E-value=0.93 Score=42.43 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcC-------CCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMG-------YDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G-------~~~V~v~e~~~~ 180 (240)
....+|+|||+|.-|-+.|..|+++| + +|+++.++..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~-~V~lw~~~~~ 52 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN-EVRMWVLEEI 52 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC-eEEEEEeccc
Confidence 34568999999999999999999997 7 7999977653
No 488
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.57 E-value=0.37 Score=38.33 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=30.8
Q ss_pred CCCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201 144 PDTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNT 179 (240)
Q Consensus 144 ~~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~ 179 (240)
++++|+|+|+|..|.+.+..|.+.| + .|+++++..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~-~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAA-KIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEEcCCH
Confidence 4679999999999999999999986 6 799999764
No 489
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.56 E-value=0.32 Score=43.37 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=32.4
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|+|-+|.+.++.|+..|..+|+|+.|..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 3568999999999999999999999944899999864
No 490
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=91.52 E-value=0.072 Score=37.90 Aligned_cols=24 Identities=33% Similarity=0.890 Sum_probs=20.5
Q ss_pred HhhhcccCcCCCCccccCCCCCCChH
Q psy16201 36 LKEASRCLKCADAPCQKSCPTQIDIK 61 (240)
Q Consensus 36 ~~ea~rC~~c~~~~C~~aCP~~~di~ 61 (240)
......|++|+ -|+.+||++|||.
T Consensus 46 ~~~~~~CVgCg--rCv~~CP~~Idir 69 (69)
T PF13746_consen 46 RYGEGDCVGCG--RCVRVCPAGIDIR 69 (69)
T ss_pred hcCCccCCCcC--hHhhhcCCCCCcC
Confidence 34677899999 7999999999984
No 491
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.48 E-value=0.25 Score=44.09 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=30.2
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
.+|.|||.|..|...|..|++.|+ +|++|+++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999999 799999765
No 492
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=91.47 E-value=0.3 Score=46.29 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|+|..|..++..|...|..+|+++++..
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4568999999999999999999999943799998764
No 493
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.41 E-value=0.31 Score=44.14 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=30.1
Q ss_pred CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201 146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT 179 (240)
Q Consensus 146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~ 179 (240)
++|+|||+|-.|.+.|+.|+.+|.. ++.++|+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3799999999999999999999942 799999865
No 494
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.40 E-value=0.32 Score=43.10 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|+|-+|.+.+..|++.|+ +|+++++..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 346799999999999999999999999 899998764
No 495
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.39 E-value=0.3 Score=49.60 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~ 180 (240)
..-++|+|||+|..|..-|..+++.|+ +|+++|....
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~ 347 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQH 347 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 345689999999999999999999999 7999998763
No 496
>PLN02494 adenosylhomocysteinase
Probab=91.33 E-value=0.32 Score=47.03 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+++|+|+|.|..|..+|..|...|. +|+++|..+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 358999999999999999999999999 899998765
No 497
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.29 E-value=0.33 Score=44.65 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
-.+++|.|||.|..|...|..|...|+ +|.+|++..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~ 179 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYP 179 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCh
Confidence 467899999999999999999999999 899999764
No 498
>KOG2495|consensus
Probab=91.20 E-value=0.17 Score=48.22 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHH--------------cCCCcEEEEecCCCcc
Q psy16201 117 GLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSR--------------MGYDDITIYEKNTYDM 182 (240)
Q Consensus 117 ~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~--------------~G~~~V~v~e~~~~~~ 182 (240)
+|.+-+.+.......+....|+. .+-.+++||||||.|+..|..|+. .-. +||++|+.+.-.
T Consensus 193 eIR~~~~~~le~a~~~~l~~eer---kRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i-~vtLiEA~d~iL 268 (491)
T KOG2495|consen 193 EIRRKVIDNLEKAELPGLSDEER---KRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDI-KVTLIEAADHIL 268 (491)
T ss_pred HHHHHHHHHHHHhhcCCCChHHh---hheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhhe-EEEeeccchhHH
Q ss_pred ------ccccchHHHhccCceEEeCCcc
Q psy16201 183 ------VTNVSPRIVKGTTSRHLYGPEQ 204 (240)
Q Consensus 183 ------~~~~~~~~~~~~gv~~~~~~~v 204 (240)
+..+....+...++.+.+++-|
T Consensus 269 ~mFdkrl~~yae~~f~~~~I~~~~~t~V 296 (491)
T KOG2495|consen 269 NMFDKRLVEYAENQFVRDGIDLDTGTMV 296 (491)
T ss_pred HHHHHHHHHHHHHHhhhccceeecccEE
No 499
>KOG0024|consensus
Probab=91.19 E-value=0.35 Score=44.64 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201 143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179 (240)
Q Consensus 143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~ 179 (240)
..+.+|+|.|+||.||.+...+...|.++|.+.|-.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 4578999999999999999999999988899988543
No 500
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.18 E-value=0.33 Score=49.15 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCC
Q psy16201 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGP 202 (240)
Q Consensus 145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~ 202 (240)
.++-+|||+|.-||.+|.-|.+.|. +++|++-.+... ..+.+.+.++++|++|+++.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm-~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~ 208 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGM-EVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEK 208 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCC-ceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeeccc
Confidence 4457899999999999999999999 799998776532 33455667789999999865
Done!