RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16201
(240 letters)
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 173 bits (441), Expect = 1e-51
Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 11/163 (6%)
Query: 18 LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
NFD++ + A++EASRCL+C DAPC K+CP IDI FI I+ N GAA+
Sbjct: 19 RAQNFDEV-APGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAE 77
Query: 78 AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
I NPL CG VCP LC G C E P+ IG L+++ T+ + G +
Sbjct: 78 TILETNPLPAVCGRVCPQERLCEGACVRGKKGE-PVAIGRLERYITDWAMETGWVLFKRA 136
Query: 138 DAKVDFPDT--KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
P T K+A+IG GPA L+ A L+R GY D+TI+E
Sbjct: 137 ------PKTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 133 bits (337), Expect = 1e-36
Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
NF+++ +E A+KEASRCL+C C K CP I+I FI+ + ++ AAK
Sbjct: 20 ATNFEEV-CLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKI 78
Query: 79 IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
I N L CG VCP C G C L E P+ IG L++F + ++ GI +
Sbjct: 79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGE-PVAIGKLERFVADWARENGIDLSETEE 137
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
K K+A+IG GPA L+CA L++MGY D+TI+E
Sbjct: 138 KK----GKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFE 170
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 118 bits (297), Expect = 6e-31
Identities = 55/159 (34%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
+F + A+ EA+RCL C D PC CP DI I + + A K
Sbjct: 3 PKDFREA-VVGSGPEAAIYEAARCLDCGD-PCITGCPVHNDIPEPIGLVREGVDHEAIKL 60
Query: 79 IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
I N L G VCP +LC G C L EE P+NIG L++ + G P
Sbjct: 61 IHKTNNLPAITGRVCPLGNLCEGACVLG-IEELPVNIGALERAIGDKADREGWIPGELPG 119
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
++ K+A+IG GPA L+ A LSR G+ D+T++E+
Sbjct: 120 SRTGK---KVAVIGAGPAGLAAADDLSRAGH-DVTVFER 154
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 117 bits (294), Expect = 5e-30
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 17/164 (10%)
Query: 19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
N F+++ + L++ A+ EA RCL C + C + CP IDI FI +I N+ AAK
Sbjct: 309 HNRFEEV-NLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIERGNFLEAAKI 367
Query: 79 IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
+ + L CG VCP C C E + IG L++F + ++ G
Sbjct: 368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESG-------- 419
Query: 139 AKVDFPDT------KIALIGCGPASLSCATFLSRMGYDDITIYE 176
+ P+ K+A+IG GPA LS A L++ GY D+T++E
Sbjct: 420 -NISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFE 461
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 115 bits (289), Expect = 7e-30
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 31 SERGALKEASRCLKCADA--PCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLT 88
+E+ AL EA RCL C DA PC K CP + I FI I ++ GA I + + L
Sbjct: 17 TEQLALVEAQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAI 76
Query: 89 CGMVCPTSDLCMGGCNLYAAEEG---PINIGGLQQFATEVFKDMGISQIRPPDAKVDFPD 145
CG VCP C G C + + P++IG L++F + + GI K
Sbjct: 77 CGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETE---PEKAPSTH 133
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYE 176
K+A+IG GPA L+CA+ L++ G+ +T++E
Sbjct: 134 KKVAVIGAGPAGLACASELAKAGH-SVTVFE 163
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 111 bits (280), Expect = 2e-28
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 21 NFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIF 80
+F + + SE A +A+RC+ C C CP I + + + AA+ +
Sbjct: 26 DFKEF-YEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAERLH 84
Query: 81 SDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK 140
N G VCP C G C L GP+ I ++++ + + G + PP +
Sbjct: 85 QTNNFPEFTGRVCPAP--CEGACTL-NINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKR 141
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
K+A++G GPA L+ A L+R G+ +T++E+
Sbjct: 142 TGK---KVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 94.5 bits (235), Expect = 2e-22
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 22 FDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFS 81
F +I + A +A RCL C + C+ CP I ++ + AA+
Sbjct: 23 FREI-YCPFDPGQAQYQADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSHQ 81
Query: 82 DNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKV 141
N L CG VCP LC G C L E G + IG L+++ T+ MG RP + V
Sbjct: 82 TNTLPEICGRVCPQDRLCEGACTL-NDEFGAVTIGNLERYITDTALAMG---WRPDLSHV 137
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMG 168
++A+IG GPA L+CA L+R G
Sbjct: 138 VPTGKRVAVIGAGPAGLACADILARAG 164
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 93.5 bits (232), Expect = 9e-22
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 21/178 (11%)
Query: 1 MPEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDI 60
MPE+ ++ F +L + +D AL+EA RC++CA C CP QIDI
Sbjct: 302 MPERDAVERARNFKEVNLGYSLED----------ALQEAERCIQCAKPTCIAGCPVQIDI 351
Query: 61 KSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQ 120
FI + +++ GA + I+ + CG VCP C C + A + + IG L++
Sbjct: 352 PVFIRHVVVRDFDGALEVIYEASIFPSICGRVCPQETQCEAQC-IIAKKHESVGIGRLER 410
Query: 121 FATEVFKDMGISQIRPPDAKVDFPDT--KIALIGCGPASLSCATFLSRMGYDDITIYE 176
F +G + P F K+A+ G GPA L+ A L + G D+T+YE
Sbjct: 411 F-------VGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGV-DVTVYE 460
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 90.3 bits (225), Expect = 8e-21
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 49 PCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAA 108
PC +CP DI+ ++ + +Y A + + DNP G VC C GCN
Sbjct: 48 PCNAACPAGEDIRGWLALVRGGDYEYAWRRLTKDNPFPAVMGRVCYHP--CESGCN-RGQ 104
Query: 109 EEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDT--KIALIGCGPASLSCATFLSR 166
+ + I +++F D I+ A PDT ++A+IG GPA LS A L R
Sbjct: 105 VDDAVGINAVERFLG----DYAIANGWKFPA--PAPDTGKRVAVIGGGPAGLSAAYHLRR 158
Query: 167 MGYDDITIYEKN 178
MG+ +TI+E
Sbjct: 159 MGH-AVTIFEAG 169
Score = 35.6 bits (83), Expect = 0.019
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 19 VNNFDDIKHTTLSERGALKEASRCLKCADA----PCQKSCPTQIDIK 61
V +FD++ L+E A +EA+RCL C + C +CP IK
Sbjct: 484 VGDFDEVLGG-LTEEEARQEAARCLSCGNCFECDNCYGACPQDAIIK 529
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 88.9 bits (221), Expect = 3e-20
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 45 CADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGC- 103
C APC +CP DI +I + Y A + I+ N L G +C C C
Sbjct: 444 CYVAPCVTACPINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDHQ--CQYNCT 501
Query: 104 -NLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCAT 162
Y + +NI L++ A E D + P K+A+IG GPA L+ A
Sbjct: 502 RLDY---DEAVNIRELKKVALEKGWDEYKQRWHKPAGIGS--RKKVAVIGAGPAGLAAAY 556
Query: 163 FLSRMGYDDITIYEK--NTYDMVTNVSPR 189
FL+R G+ +T++E+ N +V N+ P+
Sbjct: 557 FLARAGH-PVTVFEREENAGGVVKNIIPQ 584
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 87.1 bits (216), Expect = 1e-19
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 31 SERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCG 90
S+ A++EA+RC++C C +CP +DI +I +I + + ++ NPL + CG
Sbjct: 176 SKEQAMQEAARCVECG--ICTDTCPAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSMVCG 233
Query: 91 MVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIAL 150
VC + C C++ E PI I L+++ + S+I D + + + K+A+
Sbjct: 234 RVC--THKCETVCSIGHRGE-PIAIRWLKRYIVDNVPVEKYSEIL--DDEPEKKNKKVAI 288
Query: 151 IGCGPASLSCATFLSRMGYDDITIYE 176
+G GPA LS A FL+ MGY ++T+YE
Sbjct: 289 VGSGPAGLSAAYFLATMGY-EVTVYE 313
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 87.2 bits (216), Expect = 1e-19
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
Query: 26 KHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL 85
K E L++ C APC CP DI +I + K Y A + I+ NPL
Sbjct: 423 KEWRPVESRKLRKTLPLTDCYVAPCTTGCPINQDIPEYIRLVGEKRYLEALEVIYDKNPL 482
Query: 86 GLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPD 145
G +C C C +E +NI +++ A E D ++ P K
Sbjct: 483 PAITGTIC--DHQCQYKCTRLDYDE-SVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAH- 538
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEK--NTYDMVTNVSP 188
K+A+IG GPA LS FL+R G+ +T++EK +V N+ P
Sbjct: 539 -KVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNIIP 581
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 84.0 bits (208), Expect = 1e-18
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 19 VNNFDDIKHTTLSERGALKEASRCLKCAD-APCQKSCPTQIDIKSFITSISHKNYYGAAK 77
FD+I A +EASRCLKC + + C+ +CP I +I + N A +
Sbjct: 205 KTGFDEIYLP-FRADQAQREASRCLKCGEHSICEWTCPLHNHIPQWIELVKAGNIDAAVE 263
Query: 78 AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG----ISQ 133
N L G VCP LC G C L E G + IG ++++ ++ G +SQ
Sbjct: 264 LSHQTNSLPEITGRVCPQDRLCEGACTL-RDEYGAVTIGNIERYISDQALAKGWRPDLSQ 322
Query: 134 IRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMG 168
+ D +V A+IG GPA L+CA L+R G
Sbjct: 323 VTKSDKRV-------AIIGAGPAGLACADVLARNG 350
Score = 34.7 bits (80), Expect = 0.035
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 34 GALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKN 71
+ A C C DAPC +SCP +ISH +
Sbjct: 48 QQQRSAVTCHHCEDAPCARSCPNG--------AISHVD 77
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 83.2 bits (205), Expect = 2e-18
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 20 NNFDDIKHTTLSERGALKEASRCLKCAD-APCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
+F +I + L + A E+ RC+ CA+ A C CP I +I + AA+
Sbjct: 189 THFGEI-YCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQEGKIIEAAEL 247
Query: 79 IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
+ L CG VCP LC G C L G ++IG L+++ T+ MG RP
Sbjct: 248 CHQTSSLPEICGRVCPQDRLCEGACTL-KDHSGAVSIGNLERYITDTALAMG---WRPDV 303
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMG 168
+KV K+A+IG GPA L CA L+R G
Sbjct: 304 SKVVPRSEKVAVIGAGPAGLGCADILARAG 333
Score = 30.0 bits (67), Expect = 1.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 33 RGALKEASRCLKCADAPCQKSCPTQ 57
+G C C +APC +CP
Sbjct: 47 KGQAANPVACHHCNNAPCVTACPVN 71
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 74.0 bits (182), Expect = 4e-15
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 39 ASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDL 98
C C PC+ +CP +I FI +I+ + A + I PL G +CP
Sbjct: 94 EQHCGDC-LGPCELACPAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPAP-- 150
Query: 99 CMGGCNLYAAEEGPINIGGLQQFATEVFKDMG-----ISQIRPPDAKVDFPDTKIALIGC 153
C C + +E P++I L+++A + +DM I + P K K+A+IG
Sbjct: 151 CEEACRRHGVDE-PVSICALKRYAAD--RDMESAERYIPERAPKSGK------KVAIIGA 201
Query: 154 GPASLSCATFLSRMGYDDITIYEKN 178
GPA L+ A +L R G+ D+TI++ N
Sbjct: 202 GPAGLTAAYYLLRKGH-DVTIFDAN 225
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 61.0 bits (148), Expect = 8e-11
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKS--CPTQIDIKSFITSISHKNYYGAA 76
+ ++ + + A +A+RC+ C C CP I F + + A
Sbjct: 22 LKDWKEF-TNPFDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFRGRWKEAL 80
Query: 77 KAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP 136
+ + N G VCP C G C L E P+ I +++ + G Q RP
Sbjct: 81 DRLHATNNFPEFTGRVCPAP--CEGACTL-GISEDPVGIKSIERIIIDKGFQEGWVQPRP 137
Query: 137 PDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
P + K+A++G GPA L+ A L+R G+ +T++E+
Sbjct: 138 PSKRTGK---KVAVVGSGPAGLAAADQLNRAGH-TVTVFERE 175
>gnl|CDD|239244 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD)
FMN-binding domain. DHPD catalyzes the first step in
pyrimidine degradation: the NADPH-dependent reduction of
uracil and thymine to the corresponding
5,6-dihydropyrimidines. DHPD contains two FAD, two FMN,
and eight [4Fe-4S] clusters, arranged in two electron
transfer chains that pass the dimer interface twice. Two
of the Fe-S clusters show a hitherto unobserved
coordination involving a glutamine residue.
Length = 299
Score = 58.1 bits (141), Expect = 5e-10
Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222
D+VTNVSPRI + TS G Q F NIELISEK W+
Sbjct: 50 DIVTNVSPRIARLRTS----GRGQIGFNNIELISEKPLEYWL 87
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 58.3 bits (141), Expect = 7e-10
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 24/157 (15%)
Query: 38 EASRCLKCADAPCQ------------KSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL 85
E R +C D PC+ CP +I I + + + + A + I S NPL
Sbjct: 186 EVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLGNGKHREALELIESCNPL 245
Query: 86 GLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP------PDA 139
G VCP C G C + PI IG L+ + + K + + P A
Sbjct: 246 PNVTGRVCPQELQCQGVC---THTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWA 302
Query: 140 KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
P IA++G GP+ L A L+ G+ +T++E
Sbjct: 303 AAVKP--PIAVVGSGPSGLINAYLLAVEGF-PVTVFE 336
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 41.3 bits (97), Expect = 3e-04
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
P + +IG G L+ A L+R G +T+ EKN
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKND 36
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 40.9 bits (96), Expect = 3e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
P KIA+IG G + LS A LSR D+T++E +
Sbjct: 7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRR 41
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 39.7 bits (93), Expect = 7e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
+A++G GPA L+ A L+R G D+T+ E+
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGL-DVTLLERAP 35
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 39.0 bits (91), Expect = 0.001
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK----------NTYDMVTNVSPR 189
T +A+IG G + L+ A L + G D I+EK N Y + SP+
Sbjct: 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPK 62
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 38.8 bits (91), Expect = 0.001
Identities = 14/31 (45%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
K+A+IG GPA L+ A +L+ +GY ++ +Y+K
Sbjct: 20 KVAIIGAGPAGLAAAGYLACLGY-EVHVYDK 49
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+G G + L A L++ G D+ + EK
Sbjct: 2 VGAGLSGLVAAYLLAKRGK-DVLVLEKRDR 30
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 38.3 bits (90), Expect = 0.002
Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
D+ + +A++G GP+ L+ A +L++ G + ++E+
Sbjct: 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLS 59
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 36.5 bits (85), Expect = 0.008
Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
D+ ++ + ++G GP+ L+ A +L++ G + I+E+
Sbjct: 27 DYLESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLS 64
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 35.4 bits (82), Expect = 0.014
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+ +IG GPA L+ A L+R+G + + E+
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGL-KVALIEREGG 33
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 35.9 bits (83), Expect = 0.017
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
++A+ G G A L+ A L+ GY D+T+YE
Sbjct: 1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDR 34
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 35.4 bits (82), Expect = 0.023
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
KIA+IG G A LS A L + G D ++T++E +
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 34.8 bits (80), Expect = 0.027
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEK 177
IA++G G A L+ A L G ++T++EK
Sbjct: 4 IAIVGAGIAGLAAAYALREAGR-EVTVFEK 32
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 35.0 bits (81), Expect = 0.028
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
KIA+IG G L+ A L G+ ++ ++EKN
Sbjct: 2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE 33
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 33.7 bits (78), Expect = 0.062
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
KIA++G G A L+ A L++ G+ ++T++E +
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEAD 31
>gnl|CDD|237575 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.
Length = 576
Score = 33.6 bits (78), Expect = 0.080
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 145 DTKIALIGCGPASLSCATFLSR---MGYDDITIYEK 177
+ K +IG G ASL+ A FL R M ++ITI E+
Sbjct: 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEE 57
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 33.3 bits (77), Expect = 0.093
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
+ +IG GPA L+ A L + GY +T+ E
Sbjct: 3 NKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEA 35
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 33.2 bits (76), Expect = 0.10
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEK 177
+ ++G GPA S A L++ G D+ + EK
Sbjct: 6 VVIVGAGPAGSSAARRLAKAGL-DVLVLEK 34
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 32.7 bits (75), Expect = 0.10
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSR 197
+ +IG G LS A L+R G +T+ E+ + G + R
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGL-SVTLLERG----------DLASGASGR 40
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 32.6 bits (74), Expect = 0.18
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
+ +IG G LS A +L+ G D+T+ E G R+
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAG----------EAGGGAAGRN 46
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 31.9 bits (73), Expect = 0.21
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITI 174
KI +IG G S A LS G++ + I
Sbjct: 2 KIIIIGAGRVGRSVARELSEEGHNVVLI 29
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 32.4 bits (74), Expect = 0.22
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 122 ATEVFKD---MGISQIR---PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY 175
ATE KD M +++ R P + + +IG G A ++ A L+ MG+ +
Sbjct: 95 ATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLV- 153
Query: 176 EKNTY 180
EK
Sbjct: 154 EKEPS 158
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 31.8 bits (73), Expect = 0.33
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN--TYDMVTNVSPRIV 191
DT + ++G GP L+ A L + G + + E+ YD+ PR V
Sbjct: 9 HDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPTLYDL-----PRAV 52
>gnl|CDD|224065 COG1142, HycB, Fe-S-cluster-containing hydrogenase components 2
[Energy production and conversion].
Length = 165
Score = 30.5 bits (69), Expect = 0.38
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 42 CLKCADAPCQKSCPTQ 57
C C DAPC + CP
Sbjct: 53 CHHCEDAPCAEVCPVG 68
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 31.1 bits (71), Expect = 0.50
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYD 170
+T + ++G GPA L A L+R G
Sbjct: 1 ETDVLIVGGGPAGLMLALLLARAGVR 26
>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
Members of this family are the enzyme 4-hydroxybenzoate
3-monooxygenase, also called p-hydroxybenzoate
hydroxylase. It converts 4-hydroxybenzoate + NADPH +
molecular oxygen to protocatechuate + NADPH + water. It
contains monooxygenase (pfam01360) and FAD binding
(pfam01494) domains. Pathways that contain this enzyme
include the protocatechuate 4,5-degradation pathway
[Energy metabolism, Other].
Length = 390
Score = 30.9 bits (70), Expect = 0.52
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GP+ L L + G D++ I E+ + D V
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQSRDYV 39
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 31.0 bits (71), Expect = 0.54
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKN 178
I ++G GP L+ A L+R G + + E
Sbjct: 2 IVIVGGGPVGLALALALARSGGLKVALIEAT 32
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 30.7 bits (70), Expect = 0.56
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ ++G G LS A LSR+G I + E N
Sbjct: 2 VIIVGGGLVGLSLALALSRLGKIKIALIEAN 32
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 30.7 bits (70), Expect = 0.57
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 129 MGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
M + + KI +IG G + + G + + NT
Sbjct: 1 MDEIETEFRELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINT 51
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 29.9 bits (68), Expect = 0.61
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 149 ALIGCGPASLSCATFLSRMGYD---DITIYEKN 178
A+IG GP LS L R D DIT+++ +
Sbjct: 1 AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPS 33
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 30.4 bits (69), Expect = 0.82
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+ IA+IG G ++ A L++ GY +T+++++ Y
Sbjct: 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHRY 35
>gnl|CDD|223514 COG0437, HybA, Fe-S-cluster-containing hydrogenase components 1
[Energy production and conversion].
Length = 203
Score = 29.7 bits (67), Expect = 0.90
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 42 CLKCADAPCQKSCPT 56
C+ C D PC K CPT
Sbjct: 69 CMHCEDPPCVKVCPT 83
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 30.3 bits (68), Expect = 0.98
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 148 IALIGCGPASLSCATFLSRMGYD-DITIYEKNTYD 181
I ++G G A LS AT L R+ +IT+ +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 29.5 bits (67), Expect = 1.00
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 36/114 (31%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY---------------------- 175
+A ++ K+ ++G G A+ + A L+ +G I I
Sbjct: 12 EAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIA 71
Query: 176 ------EKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY 223
D++ N TT + ++ L Y VY
Sbjct: 72 YLDLEELLAEADLIIN--------TTPVGMKPGDELPLPPSLLKPGGVVYDVVY 117
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 30.3 bits (69), Expect = 1.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNT-YD 181
+I IG GPA L A + + ++T+ E+N YD
Sbjct: 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD 38
>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1)
of the ubiquitin-like proteins. This family includes
classical ubiquitin-activating enzymes E1,
ubiquitin-like (ubl) activating enzymes and other
mechanistic homologes, like MoeB, Thif1 and others. The
common reaction mechanism catalyzed by MoeB, ThiF and
the E1 enzymes begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD, ThiS and ubiquitin,
respectively, on the alpha-phosphate of an ATP molecule
bound at the active site of the activating enzymes,
leading to the formation of a high-energy acyladenylate
intermediate and subsequently to the formation of a
thiocarboxylate at the C termini of MoaD and ThiS.
Length = 143
Score = 29.2 bits (66), Expect = 1.1
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE 203
++ L+G G A L+R G IT+ + +T + ++N+ +R +
Sbjct: 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE-LSNL---------NRQFLARQ 47
>gnl|CDD|240623 cd05199, SDH_like, Saccharopine Dehydrogenase like proteins.
Saccharopine Dehydrogenase (SDH) and related proteins,
including bifunctional lysine ketoglutarate
reductase/SDH enzymes and N(5)-(carboxyethyl)ornithine
synthases. SDH catalyzes the final step in the
reversible NAD-dependent oxidative deamination of
saccharopine to alpha-ketoglutarate and lysine, in the
alpha-aminoadipate pathway of L-lysine biosynthesis. SDH
is structurally related to formate dehydrogenase and
similar enzymes, having a 2-domain structure in which a
Rossmann-fold NAD(P)-binding domain is inserted within
the linear sequence of a catalytic domain of related
structure. Bifunctional lysine ketoglutarate
reductase/SDH protein is a pair of enzymes linked on a
single polypeptide chain that catalyze the initial,
consecutive steps of lysine degradation. These proteins
are related to the 2-domain saccharopine dehydrogenases.
Length = 319
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 140 KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
KV P KI + G G A L +G +++ + T
Sbjct: 171 KVGLPPPKIVITGSGRVGSGAAEVLKALGIKEVSPEDFLTV 211
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 30.0 bits (68), Expect = 1.4
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 130 GISQIRPPDAKVDFPDTKIALI-GCGPASLSCATFLSRMGYDDIT 173
G RP D PD LI GCGPA L+ A LS + DIT
Sbjct: 20 GRGINRPADL----PDEVDVLIVGCGPAGLTLAAQLSA--FPDIT 58
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
+D+ ++ + ++G GP+ L+ A +L++ G + I E+
Sbjct: 13 LDYAESDVVIVGAGPSGLTAAYYLAKKGL-KVAIIER 48
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 149 ALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+IG G A L A +R G + + EKN
Sbjct: 1 IIIGGGAAGLMAAITAAREGL-SVLLLEKN 29
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 29.8 bits (67), Expect = 1.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
P P K+A+IG G A +S A L G+ ++ IYE +
Sbjct: 65 PPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPF 109
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYE 176
KI ++G GPA L+ A L R G+ +T+ E
Sbjct: 695 KIIVVGAGPAGLTAARHLQRQGF-SVTVLE 723
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 29.5 bits (67), Expect = 1.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
D + +IG G + A LS D + + EK
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKE 37
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 29.0 bits (65), Expect = 1.7
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMG 168
+D+ ++ + ++G GP+ L+ A +L++ G
Sbjct: 17 LDYAESDVIIVGAGPSGLTAAYYLAKNG 44
>gnl|CDD|129492 TIGR00397, mauM_napG, MauM/NapG family ferredoxin-type protein.
MauM is involved in methylamine utilization. NapG is
associated with nitrate reductase activity. The two
proteins are highly similar [Energy metabolism, Electron
transport].
Length = 213
Score = 28.7 bits (64), Expect = 2.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 42 CLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL---GLTCGM---VCP 94
C C D PC ++CPT + +T I K G A + + L GL C + VCP
Sbjct: 93 CRMCKDIPCARACPTGA-LDPLLTDI-RKADMGVAVLVGHETCLNYKGLNCSICVRVCP 149
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 29.0 bits (65), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP 188
+ + DT + ++G G A LSCA LS+ + I E+ +VSP
Sbjct: 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQ-------SVSP 128
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 28.8 bits (65), Expect = 2.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 148 IALIGCGPASLSCATFLSRMGYD 170
+ ++G G A L A L +
Sbjct: 2 LVIVGAGLAGLLLALRLRQARPG 24
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 28.8 bits (65), Expect = 2.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 148 IALIGCGPASLSCATFLSRMG 168
I ++G GPA LS A L+ G
Sbjct: 6 IVVVGAGPAGLSFARSLAGSG 26
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp. strain
PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria, where
myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed to
myxoxanthophyll [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 492
Score = 28.9 bits (65), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+T + +IG G A L+ A L++ GY +T+ E
Sbjct: 1 ETSVVVIGAGIAGLTAAALLAKRGY-RVTLLE 31
>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 28.6 bits (65), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV 183
T++A+IG GPA L L G D + + E+ + + V
Sbjct: 3 TQVAIIGAGPAGLLLGQLLHLAGIDSV-VLERRSREYV 39
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 29.0 bits (65), Expect = 3.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 26 KHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKN 71
K L+ER +L+E + L+C A Q+ TQ D TS S N
Sbjct: 407 KERLLAERDSLRETNEELRCGQA--QQDQLTQADAG---TSPSGDN 447
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 28.4 bits (64), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
+ +IG GPA L+ A + +R G + I E
Sbjct: 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEG 35
>gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and
Dihydropyrimidine dehydrogenase (DHPD) FMN-binding
domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
DHPD catalyzes the first step in pyrimidine degradation:
the NADPH-dependent reduction of uracil and thymine to
the corresponding 5,6-dihydropyrimidines. DHPD contains
two FAD, two FMN and eight [4Fe-4S] clusters, arranged
in two electron transfer chains that pass its
homodimeric interface twice. Two of the Fe-S clusters
show a hitherto unobserved coordination involving a
glutamine residue.
Length = 289
Score = 28.5 bits (64), Expect = 3.3
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 168 GYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222
G+ + + N PR+ + PEQ LN + W+
Sbjct: 33 GFGAVVYKTVTLHPRPGNPLPRVARLPPEGE-SYPEQLGILNSFGLPNLGLDVWL 86
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 28.3 bits (64), Expect = 4.0
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ +IG GPA L A ++ G + + +K
Sbjct: 5 DVIIIGGGPAGLMAAISAAKAGR-RVLLIDKG 35
>gnl|CDD|220973 pfam11084, DUF2621, Protein of unknown function (DUF2621). This
family is conserved in the Bacillaceae family. Several
members are named as YneK. The function is not known.
Length = 141
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 196 SRHLYGPEQGSFLNIELIS 214
+RHL+G E+ L EL+S
Sbjct: 55 TRHLWGDEEKELLE-ELVS 72
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 28.2 bits (63), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 150 LIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE 203
+IG GPA LS + R D + I EK+ + ++ +V + GPE
Sbjct: 9 IIGGGPAGLSAGIYAGRAKLDTLII-EKDDFGGQITITSEVVNYPGILNTTGPE 61
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 28.0 bits (63), Expect = 4.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITI----YEK 177
+ K+ +IG G A L+ G +ITI YE+
Sbjct: 175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYER 214
>gnl|CDD|179174 PRK00941, PRK00941, acetyl-CoA decarbonylase/synthase complex
subunit alpha; Validated.
Length = 781
Score = 28.0 bits (63), Expect = 4.6
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
+ A +C +C C + CP ++ I + + + +
Sbjct: 401 ELAKKCTECGW--CVRVCPNELPIPEAMEAAAKGDLSKLED 439
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 28.0 bits (63), Expect = 4.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKN 178
IG G L+ A L+ G +T+ E+
Sbjct: 4 IGAGFGGLALAIRLAAAGI-PVTVVEQR 30
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 27.9 bits (63), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
A+IG G A + A L+R G+ +T+YE
Sbjct: 259 KARDAAIIGGGIAGAALALALARRGW-QVTLYEA 291
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell
envelope biogenesis, outer membrane].
Length = 448
Score = 27.6 bits (62), Expect = 5.6
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
DF K+ ++G G + L+ A FL ++G ++T+ +
Sbjct: 3 EDFQGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRP 40
>gnl|CDD|153282 cd07598, BAR_FAM92, The Bin/Amphiphysin/Rvs (BAR) domain of Family
with sequence similarity 92 (FAM92). BAR domains are
dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions including organelle biogenesis, membrane
trafficking or remodeling, and cell division and
migration. This group is composed of proteins from the
family with sequence similarity 92 (FAM92), which were
originally identified by the presence of the unknown
domain DUF1208. This domain shows similarity to the BAR
domains of sorting nexins. Mammals contain at least two
member types, FAM92A and FAM92B, which may exist in many
variants. The Xenopus homolog of FAM92A1, xVAP019, is
essential for embryo survival and cell differentiation.
FAM92A1 may be involved in regulating cell proliferation
and apoptosis. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 211
Score = 27.3 bits (61), Expect = 5.8
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIA 149
D N YA E P GL+ FA + + R A+V+ + K+
Sbjct: 41 GDELAKSINAYADTENPSLKQGLKNFAECLAA---LQDYR--QAEVERLEAKVV 89
>gnl|CDD|131996 TIGR02951, DMSO_dmsB, DMSO reductase, iron-sulfur subunit. This
family consists of the iron-sulfur subunit, or chain B,
of an enzyme called the anaerobic dimethyl sulfoxide
reductase. Chains A and B are catalytic, while chain C
is a membrane anchor.
Length = 161
Score = 27.0 bits (60), Expect = 6.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 42 CLKCADAPCQKSCPT 56
C CAD C K+CPT
Sbjct: 64 CNHCADPACVKNCPT 78
>gnl|CDD|218897 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa
myosin-cross-reactive antigen like family. Members of
this family are thought to have structural features in
common with the beta chain of the class II antigens, as
well as myosin, and may play an important role in the
pathogenesis.
Length = 500
Score = 27.8 bits (62), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 150 LIGCGPASLSCATFLSR---MGYDDITIYEK 177
+IG G ASL+ A FL R M + I I E+
Sbjct: 7 IIGSGLASLAAAVFLIRDGQMDGERIHILEE 37
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 27.4 bits (62), Expect = 6.4
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT 194
P +A+IG G L LSR+G +T++E RI+
Sbjct: 167 KLPK-SLAVIGGGVIGLELGQALSRLGV-KVTVFE---------RGDRILPLE 208
>gnl|CDD|235031 PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase;
Provisional.
Length = 381
Score = 27.5 bits (62), Expect = 6.8
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 115 IGGLQQFATEVFKDMGISQIRPPDAKVDFPDT 146
I G V K + + + V F D+
Sbjct: 125 IRGTSFLKKHVLKALSEDEKAWLEEHVGFVDS 156
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 27.5 bits (62), Expect = 6.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMG 168
D D K+ G G A+L+C L +G
Sbjct: 190 DIEDVKLVASGAGAAALACLDLLVSLG 216
>gnl|CDD|182382 PRK10330, PRK10330, formate dehydrogenase-H ferredoxin subunit;
Provisional.
Length = 181
Score = 27.2 bits (60), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 39 ASRCLKCADAPCQKSCP 55
A+ C +C DAPC CP
Sbjct: 55 ATVCRQCEDAPCANVCP 71
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 27.8 bits (63), Expect = 7.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGY--DDIT-------IYEKNTYDM 182
D KI + G G A+++C L +G ++I IY+ T M
Sbjct: 185 DVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGM 231
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 27.5 bits (61), Expect = 7.4
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIY-----EKNTY 180
K+ ++G G A L+ A L++ G+ D+TI + N+Y
Sbjct: 1 MMKVGIVGGGLAGLTAAISLAKKGF-DVTIIGPGIKKSNSY 40
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 27.2 bits (61), Expect = 9.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY 175
D KI + G G A ++ A L G + I+
Sbjct: 193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF 229
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,615,155
Number of extensions: 1035611
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 103
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)