RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16201
(240 letters)
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 258 bits (662), Expect = 2e-80
Identities = 127/166 (76%), Positives = 138/166 (83%), Gaps = 5/166 (3%)
Query: 18 LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+KNYYGAAK
Sbjct: 55 LENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAK 114
Query: 78 AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M I QIR P
Sbjct: 115 MIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNP 174
Query: 138 DAKVDFP-----DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
KIAL+G GPAS+SCA+FL+R+GY DITI+EK
Sbjct: 175 CLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQ 220
Score = 70.2 bits (172), Expect = 4e-14
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK 240
D+VTNVSPRIV+GTTS +YGP Q SFLNIELISEKTA W C+ ++ + +F +
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADFPDN 635
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 105 bits (264), Expect = 2e-26
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 21 NFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIF 80
+F +I + S+ A ++A+RC +C CQ CP +I ++ S A +
Sbjct: 2 DFAEI-YARFSDERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVSQ 60
Query: 81 SDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK 140
+ N CG +CP LC G C + + G + IG ++++ + D G + R P +
Sbjct: 61 ATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRE 120
Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ + +IG GPA L+ A L GY ++ +Y++
Sbjct: 121 L---GLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRY 154
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 49.1 bits (117), Expect = 4e-07
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
D++IA+IG GPA L+ +L + G+ D TI E+
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 50/247 (20%), Positives = 75/247 (30%), Gaps = 80/247 (32%)
Query: 7 LAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITS 66
+ F +C L N DI H A++ L+ D K+ K I
Sbjct: 85 NLCLTEFENCYLEGN--DI-HAL---------AAKLLQENDTTLVKT-------KELI-- 123
Query: 67 ISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINI----GGLQQFA 122
KNY A I + P S L A EG + GG Q
Sbjct: 124 ---KNYITAR--IMAKRPFDKK-----SNSAL------FRAVGEGNAQLVAIFGG--QGN 165
Query: 123 TEV-FKDM-GISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
T+ F+++ + Q LI +LS L R D ++ +
Sbjct: 166 TDDYFEELRDLYQTYHVLVG--------DLIKFSAETLS---ELIRTTLDAEKVFTQ-GL 213
Query: 181 DMV---TNVSPRIVKGTTSRHLYGPEQGSFLNIE----LISEKTAYQWV-YYSNCKVLSN 232
+++ N S P++ L+I LI Q Y K+L
Sbjct: 214 NILEWLENPSNT------------PDKDYLLSIPISCPLI---GVIQLAHYVVTAKLLGF 258
Query: 233 TRTEFLN 239
T E +
Sbjct: 259 TPGELRS 265
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 44.1 bits (103), Expect = 2e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
KI +IG GP L A L+ +GY + +YE N
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECN 42
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 43.2 bits (101), Expect = 3e-05
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 53 SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGP 112
S + + + A L + PT E
Sbjct: 4 SVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGT--DAFTFSPIREST 61
Query: 113 INIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD-D 171
++ +++ F D+ +T I ++G G LS A LS + D
Sbjct: 62 VSRAMTRRY----FADL-----------DAHAETDIVIVGAGSCGLSAAYVLSTLRPDLR 106
Query: 172 ITIYEKNTY 180
ITI E
Sbjct: 107 ITIVEAGVA 115
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 42.3 bits (98), Expect = 7e-05
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
IA+IG G A LS A L+ G+ + +++K+
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS 34
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 42.0 bits (99), Expect = 9e-05
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ ++G G L FL+R G+ +I + EK+
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGH-EIIVLEKS 32
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 41.3 bits (97), Expect = 2e-04
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 122 ATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
++ + D +A+IG GP L+ A L + G D+++YE+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYER 57
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 41.2 bits (97), Expect = 2e-04
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
K +IG G L A LS+ G+ ++ ++E+
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGH-EVEVFERLPI 34
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 41.0 bits (95), Expect = 2e-04
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 122 ATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
+ S + P + +I ++G G A L FL + D+T+Y D
Sbjct: 2 GSSHHHHHHSSGLVPRGSH---MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRKPD 57
Query: 182 MV 183
Sbjct: 58 EY 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 46/292 (15%), Positives = 92/292 (31%), Gaps = 93/292 (31%)
Query: 10 INVFTSCSLVNNFDDIKHTTLSERGALKEA------------SRCLKCADAPCQKSCPTQ 57
++VF + V+NFD K + L + S L+ K +
Sbjct: 22 LSVFED-AFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEE 77
Query: 58 IDIKSFITSISHKNYYGAAKAIFSDN--PLGLTCGMVCPTSDLCMGGCNLYAAEEGPINI 115
+ ++ F+ + NY I ++ P +T +Y + +
Sbjct: 78 M-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMT---------------RMYIEQRDRLYN 121
Query: 116 GGLQQFATEVFKDMGISQIRPPDA------KVDFPDTKIAL---IGCGPASL---SCATF 163
+VF +S+++P ++ P + + +G G + C ++
Sbjct: 122 DN------QVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 164 LSRMGYDD----ITIYEKNTYD----MVTNVSPRIVKGTTSR--HLYGPEQGSFLNIELI 213
+ D + + N+ + M+ + +I TSR H + L I I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LRIHSI 230
Query: 214 SEKTAYQW--------------VYYSN--------CKVLSNTR----TEFLN 239
+ V + CK+L TR T+FL+
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Score = 30.6 bits (68), Expect = 0.47
Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 81/234 (34%)
Query: 16 CSLVNNFDDIKHTTLSERGAL------KEASRCL---------KCADA---PCQKSCPTQ 57
S ++ +IK S + L K CL K +A C+ T+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 58 IDIKSFITSISHKNYYGAAKAIFSDNPLGLT-------CGMV--CPTSDL----CMGG-- 102
K +S + + LT C DL
Sbjct: 274 -F-KQVTDFLSAATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 103 -CNLYAAE--EGPINIGGLQQFATEVFK---DMGISQIRPPDAKVDFPDTKIALIGCGPA 156
++ A +G + + + ++ + P + +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---------------- 372
Query: 157 SLSCATFLSRMGYDDITIYEKNT-----------YDMVTNVSPRIVKGTTSRHL 199
+M +D ++++ + +D++ + +V L
Sbjct: 373 ---------KM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 41.3 bits (96), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
KI +IG GPA L A+ L + I I EKN
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKN 34
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 40.6 bits (94), Expect = 3e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ +IG GP L A L+++ I + N
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN 43
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 40.0 bits (92), Expect = 4e-04
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
P +I ++G G A L L+R G+ D+TI E N
Sbjct: 43 PPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEANA 77
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 39.3 bits (91), Expect = 5e-04
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 94 PTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGC 153
++ + +E ++ ++ DM + + +T + ++G
Sbjct: 3 GSAGYDLNAFTFDPIKESIVS----REMTRRYMTDM-----------ITYAETDVVVVGA 47
Query: 154 GPASLSCATFLSRMGYDDITIYEKNTY 180
G A LS A +S+ + I E++
Sbjct: 48 GSAGLSAAYEISKNPNVQVAIIEQSVS 74
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 39.6 bits (93), Expect = 6e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
I + G G LSCA L + G +T+ E
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGKVTLLES 36
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 38.5 bits (89), Expect = 0.001
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
+ ++G G + L+ + LSR + + E +
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESS 36
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 37.9 bits (87), Expect = 0.002
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
F + + ++G G + LS A +++ D + I E +
Sbjct: 62 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 101
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 37.7 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
++ ++G G L+ A + R D +IT+ E
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAG 38
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 37.5 bits (86), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
K+ +IG G A L A+ L + G D + E
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLE 39
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 37.4 bits (86), Expect = 0.003
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
++A+IG G + L+ A L G ++T++E
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE 45
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 37.7 bits (87), Expect = 0.003
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+A++G G + L+ A L G D + E +
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESS 48
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 37.6 bits (87), Expect = 0.003
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYE 176
++ ++G G + +S A LS G D+ I E
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILE 35
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 37.1 bits (86), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
+A+IG G A + A L G D+ I EK T
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGT 38
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.8 bits (82), Expect = 0.009
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK------NTYDMVTNVSPRIVKGTTSRHLY 200
KI ++G G + L+ G+ + I ++ N+YD + H+Y
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDS-----ETNVM-VHVY 57
Query: 201 GP 202
GP
Sbjct: 58 GP 59
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 35.6 bits (82), Expect = 0.010
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD------DITIYEK 177
IA++G GP++ A L + + + E
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM 41
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 35.4 bits (82), Expect = 0.011
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
+IA++G + L+ A L G D+ +YE+
Sbjct: 4 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYER 36
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 35.4 bits (82), Expect = 0.013
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+A++G GPA L+ A + G+ +T+++ +
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGH-QVTLFDAH 405
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 35.3 bits (82), Expect = 0.014
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
+ + G G A L+ A L + G+ D+ ++EK
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGW-DVRLHEK 42
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 35.3 bits (81), Expect = 0.015
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-----DITIYEKN 178
+ +IG G L+ A ++ + + ++T+ E +
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS 43
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 34.7 bits (79), Expect = 0.019
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
++G G CA L ++ + + EK +
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNH 35
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.7 bits (78), Expect = 0.019
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDD--ITIYEK 177
++ ++G G CA L R + +++K
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 34.6 bits (80), Expect = 0.024
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ ++G GP+ A L GY + + +
Sbjct: 391 SVLIVGAGPSGSEAARVLMESGY-TVHLTDTA 421
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 34.6 bits (80), Expect = 0.025
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
++ ++G GP+ L A L GY D+ + E
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGY-DVVLAEAG 423
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 34.2 bits (79), Expect = 0.029
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
K +IG G LS A L + G D +YE
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGI-DCDVYEA 54
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 34.2 bits (78), Expect = 0.031
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 129 MGISQIRPPDAKVDFPDTKIALIGCGPASLSCA-TFLSRMGYDDITIYEKN 178
M + IR KIA+IG GP+ L A L+ +D +T++E+
Sbjct: 1 MCLPTIR-----------KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR 40
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 34.0 bits (79), Expect = 0.032
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDIT-------IYEKNTYDM 182
+ I + G G A LS L G +T I E+ +
Sbjct: 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQL 232
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 34.1 bits (78), Expect = 0.036
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
+I ++G GPA A L + + IYEK
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ 40
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 34.0 bits (77), Expect = 0.039
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 14/62 (22%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK------NTYDMVTNVSPRIVKGTTSRHLY 200
++G G A A L+ G + I ++ N YD + I H Y
Sbjct: 31 DYLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPHIGGNAYDCYDDAGVLI-------HPY 82
Query: 201 GP 202
GP
Sbjct: 83 GP 84
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 33.6 bits (78), Expect = 0.044
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
KI ++G +CA+ + R+ + DI I+EK+
Sbjct: 2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 33.5 bits (76), Expect = 0.045
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSR----HLYGP 202
++ +IG G LS A + + + + + + R TT+
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD------IKVYADRFTPLTTTDVAAGLWQPY 55
Query: 203 EQGSFLNIELISEKTAYQW 221
E + + +
Sbjct: 56 LSDPNNPQEADWSQQTFDY 74
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 33.5 bits (76), Expect = 0.050
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
++ ++G G LS A L+R GY + I ++
Sbjct: 8 RVVVLGSGVIGLSSALILARKGY-SVHILARD 38
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 33.5 bits (75), Expect = 0.051
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 111 GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD 170
GP + A V+ +G + D I +IG G +CA +L ++
Sbjct: 10 GPPPDPTPPRRAGSVWAHVGQHF---TEEAFD-----IVVIGAGRMGAACAFYLRQLAPG 61
Query: 171 -DITIYEKN 178
+ + E+
Sbjct: 62 RSLLLVEEG 70
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 33.3 bits (77), Expect = 0.061
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDIT-------IYEKNTYDMVTNVSPRIVKGT 194
+ K+ + G G A + FL +G ++ + E + + I + T
Sbjct: 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARIT 248
Query: 195 TSRHLYG 201
L G
Sbjct: 249 NPERLSG 255
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 33.3 bits (77), Expect = 0.062
Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
+ +IG A R+ + +T+ ++ +
Sbjct: 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 33.2 bits (77), Expect = 0.064
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
K+ ++G L + D +I YEK +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 33.2 bits (77), Expect = 0.065
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
K+ ++GC A D D+T YE N
Sbjct: 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 33.3 bits (76), Expect = 0.067
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+ + ++G G S A L+R GY ++T+ +
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 33.3 bits (77), Expect = 0.068
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
KI ++G S A L R+ + +I + E+ Y
Sbjct: 38 KIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 33.3 bits (77), Expect = 0.068
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
KI +IG S A R+ +I ++E+ Y
Sbjct: 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.0 bits (74), Expect = 0.078
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 134 IRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+ K+ +IG G + L+ A L G D+T+ E
Sbjct: 267 YKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLE 308
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide
detoxification, structural genomics, PSI, protein
structure initiative; 1.90A {Pseudomonas aeruginosa}
SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Length = 539
Score = 32.8 bits (74), Expect = 0.083
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 113 INIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPA-SLSCATFLSRMGYDD 171
N+ L + E+ A+V DT I + G + A L +GY D
Sbjct: 44 ANLP-LSRLELEI------------HARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSD 90
Query: 172 ITIYE 176
+ + +
Sbjct: 91 VALLD 95
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 32.9 bits (76), Expect = 0.083
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
+IG A +S A + R + ++ EK
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 32.9 bits (75), Expect = 0.087
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+ ++G G A LS A L+ G+ +T+ E
Sbjct: 32 NPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLE 63
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 32.8 bits (76), Expect = 0.089
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
K+ +IG G A +S A+ + R+ + D+ ++E +
Sbjct: 5 KVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 32.8 bits (76), Expect = 0.092
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
KI +IG A +S A + +I++ +K
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.9 bits (73), Expect = 0.10
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 20/97 (20%)
Query: 122 ATEVFKDMGISQIRPPDAKVDFP-------------DTKIALIGCGPASLSCATFLSRMG 168
+ GI+ P A V +P + +IA++G G ++ L R+
Sbjct: 20 TVGEARLSGINYRHPDSALVSYPVAAAAPLGRLPAGNYRIAIVGGGAGGIAALYELGRLA 79
Query: 169 YD-------DITIYEKNTYDMVTNVSPRIVKGTTSRH 198
D+ IYE + + +
Sbjct: 80 ATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLK 116
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 32.0 bits (73), Expect = 0.14
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 10/46 (21%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK---------NTYD 181
+ +IG G + LS FL R G I + + +
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAEASPGGAWQHAWH 47
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 32.2 bits (73), Expect = 0.15
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+ ++G GPA L A L + GY +T+ E
Sbjct: 10 GSHSVVVLGGGPAGLCSAFELQKAGY-KVTVLE 41
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 31.9 bits (72), Expect = 0.18
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 RCLKCADAPCQKSCPTQ 57
C C + C +CP+
Sbjct: 183 LCEHCLNPACVATCPSG 199
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.4 bits (72), Expect = 0.26
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 132 SQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK----------NTY 180
S + PDA + ++G G A L G + +E N Y
Sbjct: 8 SVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAASGVGGVWYWNRY 65
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 31.4 bits (70), Expect = 0.27
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+ K+ +IG G + L+ A L G D+T+ E
Sbjct: 97 KRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLE 137
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.30
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 32 ERGALKEASRCLKCADAPCQKSCPTQIDIKSFI 64
E+ ALK+ LK A S P + IK+ +
Sbjct: 18 EKQALKKLQASLKLY-AD--DSAPA-LAIKATM 46
Score = 29.9 bits (66), Expect = 0.43
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 10/40 (25%)
Query: 176 EKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE 215
EK + K S LY + L I+ E
Sbjct: 18 EKQA----------LKKLQASLKLYADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 3.4
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 10/22 (45%)
Query: 105 LYAAEEGP---INIGGLQQFAT 123
LYA + P I AT
Sbjct: 31 LYADDSAPALAIK-------AT 45
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 31.0 bits (71), Expect = 0.32
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 147 KIALIGCGPASLSCA-TFLSRMGYD-DITIYEKNTY 180
KI ++G A +C T L+ G +I ++++N+
Sbjct: 37 KIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN 72
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU
subunit; oxidoreductase, selenium, selenocysteine,
seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Length = 294
Score = 30.6 bits (69), Expect = 0.35
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 41 RCLKCADAPCQKSCPTQ 57
C+ C D C K+CP+
Sbjct: 99 GCMHCEDPGCLKACPSA 115
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 30.1 bits (68), Expect = 0.46
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 41 RCLKCADAPCQKSCPTQ 57
+C C PC+ + +
Sbjct: 71 QCRHCIAPPCKATADME 87
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 30.2 bits (69), Expect = 0.51
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI----YEKN----------TYDMV 183
+V+ + ++G G A+ + +L DI + EK +YD +
Sbjct: 115 KFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDEL 174
Query: 184 TNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKT 217
+N+ ++ T + +Y E S ++ E++++ +
Sbjct: 175 SNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFS 208
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 30.2 bits (69), Expect = 0.54
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ +IG G A + CA + G + + +
Sbjct: 29 DVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHA 59
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B*
2vpy_B*
Length = 195
Score = 29.6 bits (67), Expect = 0.55
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 41 RCLKCADAPCQKSCPTQ 57
+CL C + PC CPT
Sbjct: 57 QCLHCENPPCVPVCPTG 73
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 30.2 bits (68), Expect = 0.58
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN------VSPRIVK 192
IG G A S A LSR G I + + ++ + + VS
Sbjct: 12 IGGGFAGSSAAYQLSRRGL-KILLVDSKPWNRIGDKPCGDAVSKAHFD 58
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 29.8 bits (68), Expect = 0.67
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
D I ++G G AS A L ++ +T+
Sbjct: 110 QIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTV 146
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 29.9 bits (67), Expect = 0.67
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 129 MGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
S + P + + +K+A+IG GPA L ++G+ D+TIYE+
Sbjct: 9 HHSSGLVPRGSHMT--RSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYER 54
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 30.1 bits (67), Expect = 0.72
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
+TK ++G GP L A L+ +G + + EK
Sbjct: 92 NTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRI 125
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 29.8 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKNTY 180
IG GPA A+ +++ G+ + I EK +
Sbjct: 11 IGAGPAGTVAASLVNKSGF-KVKIVEKQKF 39
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.8 bits (68), Expect = 0.73
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+IG G + L ++K
Sbjct: 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKA 41
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 30.0 bits (67), Expect = 0.74
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
+ + + +IG GP L L++MG+ + I E+
Sbjct: 97 KFVAKAPENLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVER 138
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 30.1 bits (68), Expect = 0.74
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 29/96 (30%)
Query: 119 QQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE-- 176
+Q K + D +AL G + T L + G I+I
Sbjct: 62 EQLN-AWIKQHNLK-----------TDAPVALYGNDKDVDAVKTRLQKAGLTHISILSDA 109
Query: 177 ---------KNTYDMVTNVSPRIVKGTTSRHLYGPE 203
++ + V P+ + G E
Sbjct: 110 LSEPSRLQKLPHFEQL--VYPQWLH----DLQQGKE 139
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 29.9 bits (67), Expect = 0.77
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
T IA IG G A+ S A L + Y+ D
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFND 60
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 29.6 bits (67), Expect = 0.80
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVS 187
T++A+IG GP+ L L + G D I E+ T D V
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTPDYVLGRI 43
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.5 bits (67), Expect = 0.88
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
R K + +IG G + A +L++ + ++E
Sbjct: 10 RIRAMK---RHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESG 49
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 29.6 bits (67), Expect = 0.98
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 151 IGCGPASLSCATFLSRMGYD 170
+G GP + A + ++ G
Sbjct: 10 VGGGPGGSTAARYAAKYGLK 29
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 29.2 bits (65), Expect = 1.0
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 23 DDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQ 57
+D A C C + C +CPT
Sbjct: 132 EDQGGGKWPNPFFFYLARMCNHCTNPACLAACPTG 166
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 29.5 bits (66), Expect = 1.0
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKNTY 180
IG GP + A+F++ G+ + + E+ +
Sbjct: 13 IGGGPGGSTLASFVAMRGH-RVLLLEREAF 41
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 29.5 bits (67), Expect = 1.2
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIY 175
+ +AL G G A + L+ G +
Sbjct: 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVR 216
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 29.4 bits (65), Expect = 1.2
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK------NTYDMVTNVSPRIVKGTTSRHLY 200
+ ++G G L+ A ++ + + E+ N Y + V H Y
Sbjct: 9 DLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEV------HKY 62
Query: 201 GP 202
G
Sbjct: 63 GA 64
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 134 IRPPDAKVDFPDTK---IALIGCGPASLSCATFLSRMGYDDITIYE 176
I PP D + +IG G L+ L+ G+ + E
Sbjct: 25 ISPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGF-KTLLLE 69
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 29.2 bits (65), Expect = 1.2
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 146 TKIALIGCGPASLSCATFLS-----RMGYDDITIYEKN 178
T+IA++G GP+ ++ ++ +EK
Sbjct: 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQ 40
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.0 bits (66), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
++ +IG G A L CA L+++G +T+++
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNG 36
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
+A D K+ + G G A+ + + G +I+I
Sbjct: 147 EAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISI 183
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 28.6 bits (65), Expect = 1.4
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITI 174
+ K+ + G G + + G++ + I
Sbjct: 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKI 148
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 28.7 bits (65), Expect = 1.4
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
+ + +I +IG G + L + I +
Sbjct: 134 EMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDM 170
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 28.7 bits (65), Expect = 1.7
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
+ + + +G G + A L G + +
Sbjct: 120 EGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQV 156
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.7 bits (65), Expect = 1.7
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
P +IG G + A +++ G + E
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAG 41
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 28.7 bits (65), Expect = 1.8
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
R P +VD + ++G G + L L +G + + E
Sbjct: 11 RQPPEEVD-----VLVVGAGFSGLYALYRLRELGR-SVHVIETA 48
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 28.8 bits (65), Expect = 1.8
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMG 168
D + ++ IG G ++ +C + G
Sbjct: 216 DIHECRMVFIGAGSSNTTCLRLIVTAG 242
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
++ D + L+G G A+ + + G +I +
Sbjct: 141 ESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKL 177
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+A++G GP+ L+ AT L + G + + E
Sbjct: 6 RDVAIVGAGPSGLAAATALRKAGL-SVAVIE 35
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 28.3 bits (63), Expect = 2.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
K+ IG G A+ + A+ L + G D+ Y+ +
Sbjct: 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS 58
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 28.3 bits (63), Expect = 2.6
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 130 GISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
+ ++VD + ++GCGPA L+ A L+ I E+
Sbjct: 22 APAHTEAVPSQVD-----VLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE 66
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 28.1 bits (61), Expect = 2.6
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYD--DITIYEKNT 179
P I ++G G A A++L R +IT+ E
Sbjct: 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 28.2 bits (63), Expect = 2.8
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
+ D ++G G L+ A +L + + +
Sbjct: 18 GSHMPRFD-----YVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 28.1 bits (62), Expect = 2.9
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
F D + +GCG LS F ++ G + +++
Sbjct: 59 NPHIFKDKVVLDVGCGTGILSM--FAAKAGAKKVLGVDQS 96
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.0 bits (62), Expect = 3.3
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 28/86 (32%)
Query: 105 LYAAEEGPINIGGLQQFATEVFKDMGISQI--RP---------PDAKVD----FPDTK-- 147
A E ++I + A + G + P P+ + + P K
Sbjct: 254 AIAGEG--VDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEW 311
Query: 148 IALIGCG---PASLSCATFLSRMGYD 170
+ + G P LS+ G D
Sbjct: 312 LEVATFGVYSP------VALSKYGID 331
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.8 bits (62), Expect = 3.4
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
+ ++G GP L+ A ++ G+ + + E++T
Sbjct: 7 VVVVGGGPVGLATAWQVAERGH-RVLVLERHT 37
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.0 bits (63), Expect = 3.4
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 37/131 (28%)
Query: 33 RGALKEASRC--LKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCG 90
R A+ + +C KC C++ CP I I +NY K I +
Sbjct: 20 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAII-IDEENY----KPIIQEA------- 67
Query: 91 MVCPTSDLCMGGCNLYAAEEGPINIGGLQ---------QFATEVFKDMGISQIRPPDAKV 141
C +C+ C A I+I L ++ F + ++
Sbjct: 68 -SCTGCGICVHKCPFNA-----ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVK------ 115
Query: 142 DFPDTKIALIG 152
+ ++G
Sbjct: 116 --DGMVVGIVG 124
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 27.7 bits (61), Expect = 3.6
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
K F D + +GCG LS F ++ G + + ++
Sbjct: 33 NKDLFKDKIVLDVGCGTGILSM--FAAKHGAKHVIGVDMSSI 72
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 27.7 bits (61), Expect = 3.8
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP 188
D I L+ + L +G DD+ +
Sbjct: 325 ADRPIHLLAADAIAPDVIRALRSIGIDDVVDWTDPAAVDRAAPDD 369
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 27.5 bits (61), Expect = 3.9
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYE 176
+G G + L A L+ G + + E
Sbjct: 7 VGGGFSGLKAARDLTNAGK-KVLLLE 31
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.8 bits (62), Expect = 3.9
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY 180
TK+ ++G +L+ A L R+ D+ + K+ +
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 27.5 bits (61), Expect = 4.1
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
+ ++G G + ++ A L G ++ + E
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHDSGL-NVVVLE 34
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 27.4 bits (61), Expect = 4.6
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 147 KIALIGCGPASLSCATFLSRMGYD--DITIYEKNTY 180
+ ++G G + A + ++T+ N Y
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY 41
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 26.7 bits (60), Expect = 7.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKN 178
IG GP+ L A + G ++ + +K
Sbjct: 32 IGGGPSGLMAAIGAAEEGA-NVLLLDKG 58
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 26.7 bits (60), Expect = 7.5
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI 174
+ ++ L+G G A + G ++ I
Sbjct: 114 LGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI 149
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein,
reductase, mitochondria MEMB oxidoreductase; HET: FAD
HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Length = 282
Score = 26.7 bits (59), Expect = 7.8
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 32 ERGALKEASRCLKCADAPCQKSCPT 56
E+ L C+ C A C SCP+
Sbjct: 172 EQEKLDGLYECILC--ACCSASCPS 194
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 26.8 bits (58), Expect = 8.1
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
+ ++G G + +S G + ++N Y
Sbjct: 9 VIVLGTGLTECILSGIMSVNGK-KVLHMDRNPY 40
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 26.4 bits (59), Expect = 9.6
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
F + K+ ++G + + A L+++G +T+ + +D
Sbjct: 6 TFENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFD 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,537,435
Number of extensions: 200368
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 136
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)