BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16202
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 123/208 (59%), Gaps = 2/208 (0%)
Query: 11 SWMRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKF 70
++ +L + V G++PVK + + F++ K K V + GL +++ I P +F+ + F
Sbjct: 155 AYTKLKLQVNQDGRIPVKNILKMFSADK--KRVETALESCGLKFNRSESIRPDEFSLEIF 212
Query: 71 YELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRAL 130
+K+C R DI+++ I + L+Q + F+N+KQRDPRLNE+LYP +A
Sbjct: 213 ERFLNKLCLRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQAR 272
Query: 131 EIINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHN 190
+I YE N++ S +G RYL +EN + L+ LD DM QPL+ Y+INSSHN
Sbjct: 273 LLIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHN 332
Query: 191 TYLSGRQFGGKSSVEMYRQTLLAGCRFV 218
TYL+ Q G SSVEMYRQ LL GCR V
Sbjct: 333 TYLTAGQLAGTSSVEMYRQALLWGCRCV 360
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 123/208 (59%), Gaps = 2/208 (0%)
Query: 11 SWMRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKF 70
++ +L + V G++PVK + + F++ K K V + GL +++ I P +F+ + F
Sbjct: 157 AYTKLKLQVNQDGRIPVKNILKMFSADK--KRVETALESCGLKFNRSESIRPDEFSLEIF 214
Query: 71 YELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRAL 130
+K+C R DI+++ I + L+Q + F+N+KQRDPRLNE+LYP +A
Sbjct: 215 ERFLNKLCLRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQAR 274
Query: 131 EIINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHN 190
+I YE N++ S +G RYL +EN + L+ LD DM QPL+ Y+INSSHN
Sbjct: 275 LLIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHN 334
Query: 191 TYLSGRQFGGKSSVEMYRQTLLAGCRFV 218
TYL+ Q G SSVEMYRQ LL GCR V
Sbjct: 335 TYLTAGQLAGTSSVEMYRQALLWGCRCV 362
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 8 QLLSW----MRLGMLVEAKGKVPVKVVSRTFASGKTEKL-VYQTMAELGLPSGKNDVIEP 62
QL W RL + K K+PVK + + + K ++ + + + ++G PSGKND I+
Sbjct: 151 QLGEWEKLYFRLTTVEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGKNDAIDL 210
Query: 63 ADFTFDKFYELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYP 122
F FD F++ Y + R++IE +F+ ++K K I F FLN+ QR P L++ L+P
Sbjct: 211 KAFDFDTFFKFYLALLERSEIEGIFKELSKNKG-NITTVMFRDFLNDMQRHPSLHKTLFP 269
Query: 123 LYDEKRALEIINTYEQ--NEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPL 180
LY + + +IN YE N++ + + +K+GL+ +LM +EN + RLD +M L
Sbjct: 270 LYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMCEENNLTPMHRLDLGANMKLTL 329
Query: 181 AHYYINSSHNTYLSGRQFGGKSSVEMYRQTLLAGCR 216
A YYINSSHNTYL+G Q GKSSVE+YRQ LL GCR
Sbjct: 330 AAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGCR 365
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 8 QLLSW----MRLGMLVEAKGKVPVKVVSRTFASGKTEKL-VYQTMAELGLPSGKNDVIEP 62
QL W RL + K K+PVK + + + K ++ V + + ++G PSGKND IE
Sbjct: 151 QLGEWEKLYFRLTTVEMEKNKIPVKSIQKCLSKDKDDRTRVAKAIEKIGWPSGKNDAIEI 210
Query: 63 ADFTFDKFYELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYP 122
F FD F++ Y + R++IE +F+ +++ K I F FLN+ QR P L++ L+P
Sbjct: 211 KAFDFDTFFKFYLSLLERSEIEGIFKELSQNKG-NITTVMFRDFLNDMQRHPSLHKTLFP 269
Query: 123 LYDEKRALEIINTYEQ--NEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPL 180
LY + + +IN YE N++ + + +K+GL+ +LM +EN + RLD +M L
Sbjct: 270 LYTDSQCDALINEYESAVNKKGKKKGQLTKEGLLYFLMCEENNLTPMHRLDLGANMKLSL 329
Query: 181 AHYYINSSHNTYLSGRQFGGKSSVEMYRQTLLAGCR 216
A YYINSSHNTYL+G Q GKSSVE+YRQ LL GCR
Sbjct: 330 AAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGCR 365
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 2/206 (0%)
Query: 13 MRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFYE 72
++L M + ++GK+PVK + F + + K V ++ LP GKND I P DF +
Sbjct: 153 VKLKMQLNSEGKIPVKNFFQMFPADR--KRVEAALSACHLPKGKNDAINPEDFPEPVYKS 210
Query: 73 LYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEI 132
+CPR +I+E+F S + + F+N+KQRD RLN +L+P + +
Sbjct: 211 FLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGL 270
Query: 133 INTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHNTY 192
I+ YE + S +G++ +L EN+ + D+L + DM QPL HY+INSSHNTY
Sbjct: 271 IDKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTY 330
Query: 193 LSGRQFGGKSSVEMYRQTLLAGCRFV 218
L+ QF G SS EMYRQ LL+GCR V
Sbjct: 331 LTAGQFSGLSSAEMYRQVLLSGCRCV 356
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 73 LYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEI 132
Y + R +I+ F+ G AET+++++ +TFL +QR+ L AL +
Sbjct: 70 FYKMLTQRAEIDRAFEE-AAGSAETLSVERLVTFLQHQQREEEAGPAL--------ALSL 120
Query: 133 INTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHNTY 192
I YE +E + ++ +KDG + YL+S + L Y DMDQPL+HY ++SSHNTY
Sbjct: 121 IERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTY 180
Query: 193 LSGRQFGGKSSVEMYRQTLLAGCR 216
L Q G SS E Y + L GCR
Sbjct: 181 LLEDQLTGPSSTEAYIRALCKGCR 204
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 73 LYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEI 132
Y + R +I+ F+ G AET+++++ +TFL +QR+ L AL +
Sbjct: 72 FYKMLTQRAEIDRAFEE-AAGSAETLSVERLVTFLQHQQREEEAGPAL--------ALSL 122
Query: 133 INTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHNTY 192
I YE +E + ++ +KDG + YL+S + L Y DMDQPL+HY ++SSHNTY
Sbjct: 123 IERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTY 182
Query: 193 LSGRQFGGKSSVEMYRQTLLAGCR 216
L Q G SS E Y + L GCR
Sbjct: 183 LLEDQLTGPSSTEAYIRALCKGCR 206
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 43 VYQTMAELGLPSGKNDVIEPADFTFDKFYELYHKICPRNDIEELFQSITKGKAETINLDQ 102
V+ +M SG + +E AD+TFD E + K E+ KG+ E + +
Sbjct: 67 VHSSMYRYLWSSGPKECLEFADYTFD---EHFGKPIASYPPREVLWDYIKGRVEKAGVRK 123
Query: 103 FITFLNEKQRDPRLNE 118
+I F N R NE
Sbjct: 124 YIRF-NTAVRHVEFNE 138
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 149 SKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHNTYLSGRQ 197
KDG Y +D+N RL+ M QPL +Y + ++G+Q
Sbjct: 151 DKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQ 199
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 95 AETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEIIN 134
A+T+ LDQ I +N+ ++ P YDEKR EI++
Sbjct: 139 AKTMGLDQLIVAVNKM-------DLTEPPYDEKRYKEIVD 171
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 27/179 (15%)
Query: 1 MWFVLMLQLLSWMRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVI 60
+W VL+L + S + ++ + + + L P+ +N I
Sbjct: 57 IWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDI 116
Query: 61 EPADFTFDKFYELYHKIC---PRNDIEELFQSIT-KGKAETIN--LDQFITFLNEKQRDP 114
D DK+ E Y PRN +E+L Q ++ GK++ I DQ++ F+ +P
Sbjct: 117 IVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFI---VTEP 173
Query: 115 RLNEILYPLYDEKRALEIINTY-------EQNEEIRNEKSFSKDGLIRYLMSDENAPVF 166
L +LEI N Y EEI + DGL +++ + P+
Sbjct: 174 EL-----------FSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPII 221
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 34 FASGKTEKLVYQTMAEL-GLPSGK----NDVIEPAD------FTFDKFYELYHKIC 78
F + K+ K+ + +A L GL S NDV+ AD FD+F + HKIC
Sbjct: 444 FDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC 499
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 71 YELYHKICPRNDIEELFQSITKGKAETINLDQFI 104
Y + + PR +E FQ + K K + +D+FI
Sbjct: 176 YPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFI 209
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 77 ICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEII-NT 135
+ P I +F I + L++FI N +D L EI+Y +D L +I N
Sbjct: 131 LSPEEFINLVFHKIDINNDGELTLEEFI---NGMAKDQDLLEIVYKSFDFSNVLRVICNG 187
Query: 136 YEQNEEIRNEKSFSKDGLIRYLM 158
+ + E + KS K GL + M
Sbjct: 188 KQPDMETDSSKSPDKAGLGKVKM 210
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 25 VPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFYELY 74
+P+KV F G+ ++V+Q + E GL + DV+ D D Y Y
Sbjct: 1 MPIKVGINGF--GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAY 48
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
Length = 359
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 25 VPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFYELY 74
+P+KV F G+ ++V+Q + E GL + DV+ D D Y Y
Sbjct: 1 MPIKVGINGF--GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAY 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,495,596
Number of Sequences: 62578
Number of extensions: 273630
Number of successful extensions: 759
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 30
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)