RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16202
(218 letters)
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 192 bits (488), Expect = 3e-57
Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 2/207 (0%)
Query: 12 WMRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFY 71
++L M + ++GK+PVK + F + + K V ++ LP GKND I P DF +
Sbjct: 152 LVKLKMQLNSEGKIPVKNFFQMFPADR--KRVEAALSACHLPKGKNDAINPEDFPEPVYK 209
Query: 72 ELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALE 131
+CPR +I+E+F S + + F+N+KQRD RLN +L+P +
Sbjct: 210 SFLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQG 269
Query: 132 IINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHNT 191
+I+ YE + S +G++ +L EN+ + D+L + DM QPL HY+INSSHNT
Sbjct: 270 LIDKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNT 329
Query: 192 YLSGRQFGGKSSVEMYRQTLLAGCRFV 218
YL+ QF G SS EMYRQ LL+GCR V
Sbjct: 330 YLTAGQFSGLSSAEMYRQVLLSGCRCV 356
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 187 bits (474), Expect = 5e-55
Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 2/207 (0%)
Query: 12 WMRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFY 71
+ +L + V G++PVK + + F++ K K V + GL +++ I P +F+ + F
Sbjct: 156 YTKLKLQVNQDGRIPVKNILKMFSADK--KRVETALESCGLKFNRSESIRPDEFSLEIFE 213
Query: 72 ELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALE 131
+K+C R DI+++ I + L+Q + F+N+KQRDPRLNE+LYP +A
Sbjct: 214 RFLNKLCLRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL 273
Query: 132 IINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSSHNT 191
+I YE N++ S +G RYL +EN + L+ LD DM QPL+ Y+INSSHNT
Sbjct: 274 LIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNT 333
Query: 192 YLSGRQFGGKSSVEMYRQTLLAGCRFV 218
YL+ Q G SSVEMYRQ LL GCR V
Sbjct: 334 YLTAGQLAGTSSVEMYRQALLWGCRCV 360
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 184 bits (468), Expect = 2e-54
Identities = 85/211 (40%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 11 SWMRLGMLVEAKGKVPVKVVSRTFASGKTEKL-VYQTMAELGLPSGKNDVIEPADFTFDK 69
+ RL + K K+PVK + + + K ++ + + + ++G PSGKND I+ F FD
Sbjct: 158 LYFRLTTVEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDT 217
Query: 70 FYELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRA 129
F++ Y + R++IE +F+ ++K K I F FLN+ QR P L++ L+PLY + +
Sbjct: 218 FFKFYLALLERSEIEGIFKELSKNK-GNITTVMFRDFLNDMQRHPSLHKTLFPLYTDAQC 276
Query: 130 LEIINTYEQ--NEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINS 187
+IN YE N++ + + +K+GL+ +LM +EN + RLD +M LA YYINS
Sbjct: 277 EALINDYESAVNKKGKKKGQLTKEGLLYFLMCEENNLTPMHRLDLGANMKLTLAAYYINS 336
Query: 188 SHNTYLSGRQFGGKSSVEMYRQTLLAGCRFV 218
SHNTYL+G Q GKSSVE+YRQ LL GCR +
Sbjct: 337 SHNTYLTGHQLTGKSSVEIYRQVLLTGCRCL 367
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 162 bits (410), Expect = 6e-47
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
Query: 8 QLLSWMRL---GMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPAD 64
+L W+ K+ K + + + D +
Sbjct: 8 KLQHWIHSCLRKADKNKDNKMNFKELKDFLKELN----IQVDDGYARKIFRECDHSQTDS 63
Query: 65 FTFDKFYELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLY 124
++ Y + R +I+ F+ G AET+++++ +TFL +QR+ L
Sbjct: 64 LEDEEIETFYKMLTQRAEIDRAFEEAA-GSAETLSVERLVTFLQHQQREEEAGPAL---- 118
Query: 125 DEKRALEIINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYY 184
AL +I YE +E + ++ +KDG + YL+S + L Y DMDQPL+HY
Sbjct: 119 ----ALSLIERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYL 174
Query: 185 INSSHNTYLSGRQFGGKSSVEMYRQTLLAGCRFV 218
++SSHNTYL Q G SS E Y + L GCR +
Sbjct: 175 VSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCL 208
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.005
Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 60/171 (35%)
Query: 57 NDV-------IEPADFTFDKFYEL---YHKIC-----PRNDIEE--LFQSITKGKAETIN 99
ND+ ++ D T K EL Y P + LF+++ +G A+ +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 100 LDQF------ITFLNEKQRDPRLNEILYPLYDEKRAL--EIINTYEQ--NEEIRNEKSFS 149
F + E L + LY Y L ++I + +E IR
Sbjct: 159 --IFGGQGNTDDYFEE------LRD-LYQTY---HVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 150 K---DGL--IRYLMSDENAPVFLDRLDFYMD----------MDQPLAHYYI 185
K GL + +L + N P D Y+ + Q LAHY +
Sbjct: 207 KVFTQGLNILEWLENPSNTP---D--KDYLLSIPISCPLIGVIQ-LAHYVV 251
Score = 34.3 bits (78), Expect = 0.033
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 42/126 (33%)
Query: 102 QFITFLNEKQRDPRLNEILYPLYDEKRAL-EIINTYEQNEEIRNEKSFSKDGLIRYLMSD 160
+++ L E + + +++L L E N Y + +I L L+ +
Sbjct: 66 GYVSSLVEPSKVGQFDQVL------NLCLTEFENCYLEGNDIHA--------LAAKLLQE 111
Query: 161 ENAPVFLDRLDFYMDMDQPLAHYY---------INSSHNTYL-----SGR-----QFGGK 201
+ + + + + +Y + N+ L G FGG+
Sbjct: 112 NDTTLVKTK--------ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 202 SSVEMY 207
+ + Y
Sbjct: 164 GNTDDY 169
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 29.8 bits (68), Expect = 0.43
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
SD+N RL+ Y + +PL YY
Sbjct: 133 SDDNEETVRRRLEVYREKTEPLVGYY 158
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 29.8 bits (68), Expect = 0.46
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYYINSSHNTYLSGRQFGGKSSVE 205
D+ RL Y M PL YY + + G V
Sbjct: 157 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVA 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 29.1 bits (66), Expect = 1.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
SD+N RL+ Y PL YY
Sbjct: 177 SDDNKKALKIRLEAYHTQTTPLVEYY 202
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 28.7 bits (64), Expect = 1.3
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 65 FTFDKFYELYHKICPRNDIEEL----FQSITKGKAETINLDQFITFLNEKQRDPRLNEI- 119
+ ++F ++Y P D + F++ TI+ +FI L+ R ++
Sbjct: 43 LSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLK 102
Query: 120 -LYPLYDEKRALEIINTYEQNEEIRN--EKSFSKDGLIRYLMSDENAP-VFLDRLDFYMD 175
+ +YD N Y E+ + + + + DE+ P +++ MD
Sbjct: 103 WAFSMYDLDG-----NGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMD 157
Query: 176 MDQ 178
++
Sbjct: 158 TNR 160
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 28.7 bits (65), Expect = 1.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+NA RLD + PL +Y
Sbjct: 166 DDDNAEAVKVRLDVFHKQTAPLVKFY 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 28.7 bits (65), Expect = 1.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
SD+NA RL Y +P+ +Y
Sbjct: 166 SDDNADALKKRLAAYHAQTEPIVDFY 191
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+ V RL+ Y + PL YY
Sbjct: 151 EDDKPEVIKKRLEVYREQTAPLIEYY 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.7
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 25/52 (48%)
Query: 138 QNEEIRN-EKSFSKDGLIRYLMSDENAPVFLDRLDFYMDMDQPLAHYYINSS 188
+ + ++ + S K L +D++AP LA I ++
Sbjct: 18 EKQALKKLQASL-K------LYADDSAPA--------------LA---IKAT 45
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYYINSSHNTYLSGRQFG 199
D+ RLD Y +PL YY + + +G +
Sbjct: 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAP 205
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.9
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 18/59 (30%)
Query: 56 KNDVIEPADFTFDKFYELYHKICPRNDIEELFQSITKGKAETINLD-QFITFLNEKQRD 113
+ + E A +++ + + + K K D F +Q D
Sbjct: 109 EQEWREKAKKDLEEWNQRQSE------------QVEKNKINNRIADKAFY-----QQPD 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 27.9 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
+D+ V L+R+ Y D PL YY
Sbjct: 150 ADDTDDVILNRMKVYRDETAPLLEYY 175
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.0 bits (63), Expect = 2.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+N V RL + PL YY
Sbjct: 190 EDDNEDVLKKRLTVFKSETSPLISYY 215
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.9 bits (63), Expect = 2.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+ +RLD M QPL +Y
Sbjct: 161 IDDKPETVKNRLDVNMKQTQPLLDFY 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.2
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 40/160 (25%)
Query: 56 KNDVIEPADFTFDKFYELYH-KICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDP 114
+D+I P + + +H K + LF + LD FL +K
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--------RMVFLD--FRFLEQK---- 506
Query: 115 RLNEILYPLYDEKRALEIINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYM 174
I + + I+NT +Q ++ K + I +N P + ++ +
Sbjct: 507 ----IRHDSTAWNASGSILNTLQQ---LKFYKPY-----IC-----DNDPKYERLVNAIL 549
Query: 175 DMDQPLAHYYINSSHNTYLSGRQFG---GKSSV--EMYRQ 209
D + I S + L + ++ E ++Q
Sbjct: 550 DFLPKIEENLICSKYTDLL---RIALMAEDEAIFEEAHKQ 586
Score = 26.4 bits (57), Expect = 9.6
Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 40/149 (26%)
Query: 59 VIEPADFTFDKFYELYHKIC--PRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRL 116
++ + L+ + +++ + + + IN ++ + +QR P +
Sbjct: 55 IMSKDAVS--GTLRLFWTLLSKQEEMVQKFVEEVLR-----INYKFLMSPIKTEQRQPSM 107
Query: 117 NEILYPLYDEKRALEIINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDM 176
+Y +++ + + F+K + RL Y+ +
Sbjct: 108 MTRMY-------------IEQRDRLYNDNQVFAKY--------------NVSRLQPYLKL 140
Query: 177 DQPLAHYYINSSHNTYLSGRQFG-GKSSV 204
Q L + + N + G G GK+ V
Sbjct: 141 RQAL--LELRPAKNVLIDG-VLGSGKTWV 166
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 27.9 bits (63), Expect = 2.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
+D+N RL+ M PL +Y
Sbjct: 161 ADDNEETVTKRLEVNMKQTAPLLDFY 186
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.5 bits (62), Expect = 2.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+ + RL Y D +P+ YY
Sbjct: 162 EDDKPETVIKRLKAYEDQTKPVLEYY 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 27.6 bits (62), Expect = 2.8
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+ RL Y D+ +P+ Y
Sbjct: 182 EDDKPEAVAARLRQYKDVAKPVIELY 207
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 27.2 bits (61), Expect = 3.1
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 16/55 (29%)
Query: 125 DEKRALEIINTYEQNEEIRNEKSFSKDGL----------IRYLMSDENAPVFLDR 169
+ +RA++I + +++ S K IR L + + D
Sbjct: 10 EGERAIKIA------KSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIADL 58
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 27.2 bits (61), Expect = 4.2
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+ RL+ Y + L Y
Sbjct: 159 FDDTEEKVKLRLETYYQNIESLLSTY 184
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 25.8 bits (57), Expect = 4.9
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 161 ENAPVFLDRLDF---YMDMDQPLAHYYINSSHNTYLSGRQFGGKSS 203
+ P +L+F + L Y I S LS ++ G SS
Sbjct: 41 QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSS 86
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 26.8 bits (60), Expect = 5.1
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
SD+N R + + + P+ Y+
Sbjct: 148 SDDNIESIKKRFNTFKETSMPVIEYF 173
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 26.3 bits (59), Expect = 5.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
SD+N R+ Y+ +P+ Y
Sbjct: 141 SDDNRESLEKRIQTYLQSTKPIIDLY 166
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 26.3 bits (59), Expect = 6.2
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
SD+N R + + + + +Y
Sbjct: 138 SDDNIESIKKRFNTFNVQTKLVIDHY 163
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger,
ADP-ribosylating toxin, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.17.1
Length = 83
Score = 25.2 bits (55), Expect = 7.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 58 DVIEPADFTFDKFYELYHKICP 79
D +E DF +D+ E Y CP
Sbjct: 13 DEVEIEDFQYDEDSETYFYPCP 34
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 26.4 bits (59), Expect = 8.4
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 38/107 (35%)
Query: 34 FA-----SGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFYELYHKICPRNDIEELFQ 88
FA SGKT + TM G SGK+ I ++F
Sbjct: 159 FAYGQTGSGKT----H-TM--GGDLSGKSQNASKG-------------IYAMA-SRDVFL 197
Query: 89 SITKGKAETINLDQFITFL---NEKQRDPRLNEILYPLYDEKRALEI 132
+ + +NL+ ++TF N K D L ++K L +
Sbjct: 198 LKNQPRYRNLNLEVYVTFFEIYNGKVFD---------LLNKKAKLRV 235
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, mutant I218A, LYAS; 1.20A
{Methanothermobacter thermautotrophicusdelta H} PDB:
3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A*
3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A*
3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Length = 228
Score = 26.1 bits (58), Expect = 8.9
Identities = 8/54 (14%), Positives = 12/54 (22%), Gaps = 16/54 (29%)
Query: 125 DEKRALEIINTYEQNEEIRNEKSFSKDGL----------IRYLMSDENAPVFLD 168
+ AL + E+R K G I + D
Sbjct: 23 NRDDALRVT------GEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIAD 70
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.0 bits (58), Expect = 9.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 159 SDENAPVFLDRLDFYMDMDQPLAHYY 184
D+ RL+ Y P+ YY
Sbjct: 143 VDDTTKTIAKRLEAYYRASIPVIAYY 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,350,827
Number of extensions: 198084
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 59
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)