RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16202
(218 letters)
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 135 bits (341), Expect = 6e-41
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 12 WMRLGMLVEAKGKVPVKVVSRTFASGKTEKLVYQTMAELGLPSGKNDVIEPADFTFDKFY 71
++L M + ++GK+PVK + F + + K V ++ LP GKND I P DF +
Sbjct: 11 LVKLKMQLNSEGKIPVKNFFQMFPADR--KRVEAALSACHLPKGKNDAINPEDFPEPVYK 68
Query: 72 ELYHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALE 131
+CPR +I+E+F S + + F+N+KQRD RLN +L+P +
Sbjct: 69 SFLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQG 128
Query: 132 IINTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFY 173
+I+ YE + S +G++ +L EN+ + D+L +
Sbjct: 129 LIDKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLH 170
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific
phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 94
Score = 93.7 bits (233), Expect = 1e-25
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 74 YHKICPRNDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEII 133
Y + R +I+ F+ ET+++++ +TFL +QR+ L AL +I
Sbjct: 1 YKMLTQRAEIDRAFEEAAGSA-ETLSVERLVTFLQHQQREEEAGPAL--------ALSLI 51
Query: 134 NTYEQNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLDFYMDM 176
YE +E + ++ +KDG + YL+S + L Y DM
Sbjct: 52 ERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDM 94
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 89.0 bits (220), Expect = 1e-21
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 175 DMDQPLAHYYINSSHNTYLSGRQFGGKSSVEMYRQTLLAGCRFV 218
DM QPL HY+INSSHNTYL+ QF G SS EMYRQ LL+GCR V
Sbjct: 2 DMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCV 45
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 84.3 bits (208), Expect = 4e-20
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 177 DQPLAHYYINSSHNTYLSGRQFGGKSSVEMYRQTLLAGCRFV 218
DQPL+HY ++SSHNTYL Q G SS E Y + L GCR +
Sbjct: 1 DQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCL 42
>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Bacillus cereus [TaxId: 1396]}
Length = 296
Score = 39.1 bits (90), Expect = 2e-04
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 174 MDMDQPLAHYYINSSHN--TYLSGRQFGGKSSV---EMYRQTLLAGCRFV 218
+ PLA I +H+ T+ + +R + G R
Sbjct: 17 IPDSIPLARISIPGTHDSGTFKLQNPIKQVWGMTQEYDFRYQMDHGARIF 66
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 34.2 bits (78), Expect = 0.009
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 67 FDKFYELYHKICPRNDIEELFQSITKGK----AETINLDQFITFLN-EKQRDPRLNEILY 121
+ ++ E L + E + L + DP E+L+
Sbjct: 281 WTPRQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAATYHVLLEHFQPGDPDWEELLF 340
Query: 122 PLY 124
L+
Sbjct: 341 KLW 343
>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Listeria monocytogenes [TaxId: 1639]}
Length = 274
Score = 30.9 bits (69), Expect = 0.081
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 173 YMDMDQPLAHYYINSSHNTYLSGRQFGGKSSVEMYR-------QTLLAGCRFV 218
+ LA I +H+T + + + Q L AG R++
Sbjct: 9 ALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYI 61
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 112
Score = 27.5 bits (61), Expect = 0.57
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 40 EKLVYQTMAELGLPSGKNDVIEPADFTFDKFYELYHKICPRNDIEELFQS 89
EKL + S + TF E Y +C S
Sbjct: 13 EKLFLLAIVRSLKISHTPYI------TFGDAEESYKIVCEEYGERPRVHS 56
>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
(RecC), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 304
Score = 26.9 bits (59), Expect = 1.9
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 26/94 (27%)
Query: 85 ELFQSITKGKAETINLDQFITFLNEKQRDP-------RLNEILYPLYDEKRALEIINTYE 137
E Q + ET+ L+ F P RL +N
Sbjct: 2 EFVQPLPFTLPETVPLETLQRFW----AHPVRAFFQMRLQ---------------VNFRT 42
Query: 138 QNEEIRNEKSFSKDGLIRYLMSDENAPVFLDRLD 171
++ EI + + F +GL RY ++ + +++ D
Sbjct: 43 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 76
>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.3 bits (57), Expect = 2.5
Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 7/146 (4%)
Query: 63 ADFTFDKFYELYHKICPRNDIEELFQSITKGKAETINL--DQFITFLNEKQRDPRLNEIL 120
ADF F + P L +E L
Sbjct: 15 ADF-EGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFEL 73
Query: 121 YPLYDEKRALEIINTYEQNEEIRNEKSFSKDGLIRYL----MSDENAPVFLDRLDFYMDM 176
PL A++ + + + + Y + P FL+++ D
Sbjct: 74 EPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDK 133
Query: 177 DQPLAHYYINSSHNTYLSGRQFGGKS 202
A I+ + + +
Sbjct: 134 TVVSADLLIDDRPDITGAEPTPSWEH 159
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 138
Score = 26.0 bits (57), Expect = 2.8
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 81 NDIEELFQSITKGKAETINLDQFITFLNEKQRDPRLNEILYPLYDEKRALEIIN 134
D++ +F + A IN ++F L E L + ++ A + I
Sbjct: 53 TDVDIVFSKVKAKSARVINYEEFKKALEE------LATKRFKGKSKEEAFDAIC 100
>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3,
Nqo3 {Thermus thermophilus [TaxId: 274]}
Length = 439
Score = 25.8 bits (55), Expect = 4.9
Identities = 12/144 (8%), Positives = 32/144 (22%), Gaps = 29/144 (20%)
Query: 49 ELGLPSGKNDVIEPADFTFDKFYELYHKICPRNDIEELFQSITKGKAETINLDQFI---- 104
+G+ G +Y + ++ +
Sbjct: 300 AMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAP 359
Query: 105 -------TFLNEKQRDPRLNEILYPLYDEKRALEIIN----------TYEQNEEIRNEKS 147
+N + R L+ + + AL+++ + + E +
Sbjct: 360 TFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKA-- 417
Query: 148 FSKDGLIRYLMSDENAPVFLDRLD 171
++ E RL
Sbjct: 418 ------LKARKVPEAMGRLSFRLK 435
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 25.2 bits (54), Expect = 5.8
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 98 INLDQFITFLNEKQRDPRLNEILYPLYDEKRALEIINT 135
IN+ + + D +L + YD+K+ + N
Sbjct: 32 INIVT-----TKAKVDKKLGRFFFSGYDKKQTWTVQNN 64
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
Ermc' [TaxId: 1423]}
Length = 235
Score = 24.8 bits (53), Expect = 8.2
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 76 KICPRNDIEELFQSITKGKAETINLDQFITFLNE 109
KI +N + I+ +QF++ N
Sbjct: 196 KIFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNS 229
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,058
Number of extensions: 38346
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 29
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)