BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16203
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 112/154 (72%)
Query: 625 TGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNY 684
S N +S++VNY +P+KF+ F+ A ++N MSSF ET + L +EFV Y
Sbjct: 581 ASSEVNATEEMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEY 640
Query: 685 NKRQMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYL 744
NK+Q+SRIYPKGTR DSSNYMPQ+FWN GCQ+V+LNFQT D+ MQLN G FEYNG GYL
Sbjct: 641 NKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYL 700
Query: 745 LKPDFMRRSDRSFDPFAESPVDGVIAAQCAVQLL 778
LKP+FMRR D+SFDPF E VDG++A V+++
Sbjct: 701 LKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVI 734
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 456 IIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFE 515
++ G RCVELD W G+ +EEP ITHG M T++ +DV+ A+ +TAF TS +PVILSFE
Sbjct: 355 LLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFE 414
Query: 516 NHC-CKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPP 557
NH QQ K+A+YC I GD LL E L YP PGVPLP P
Sbjct: 415 NHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSP 457
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHC-CKTQQYKLAKYCDEIL 213
EP ITHG M T++ +DV+ A+ +TAF TS +PVILSFENH QQ K+A+YC I
Sbjct: 375 EPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSIF 434
Query: 214 GDLLLKECLPDYPCEPGVPLPPP 236
GD LL E L YP PGVPLP P
Sbjct: 435 GDALLIEPLDKYPLAPGVPLPSP 457
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 304 TGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNY 363
S N +S++VNY +P+KF+ F+ A ++N MSSF ET + L +EFV Y
Sbjct: 581 ASSEVNATEEMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEY 640
Query: 364 NKRQMSRIYPKGTRADSSNYMPQVKYGV 391
NK+Q+SRIYPKGTR DSSNYMPQ+ + V
Sbjct: 641 NKQQLSRIYPKGTRVDSSNYMPQLFWNV 668
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 13 VPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRA 72
V + L G F +W+E+ S +L +VD GFF++W N + D +++ + D R
Sbjct: 19 VVETLRRGSKFIKWDEETSSRNL---VTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRT 75
Query: 73 G 73
G
Sbjct: 76 G 76
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 112/154 (72%)
Query: 625 TGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNY 684
S N +S++VNY +P+KF+ F+ A ++N MSSF ET + L +EFV Y
Sbjct: 579 ASSEVNATEEMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEY 638
Query: 685 NKRQMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYL 744
NK+Q+SRIYPKGTR DSSNYMPQ+FWN GCQ+V+LNFQT D+ MQLN G FEYNG GYL
Sbjct: 639 NKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYL 698
Query: 745 LKPDFMRRSDRSFDPFAESPVDGVIAAQCAVQLL 778
LKP+FMRR D+SFDPF E VDG++A V+++
Sbjct: 699 LKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVI 732
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 456 IIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFE 515
++ G RCVELD W G+ +EEP ITHG M T++ +DV+ A+ +TAF TS +PVILSFE
Sbjct: 353 LLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFE 412
Query: 516 NHC-CKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPP 557
NH QQ K+A+YC I GD LL E L YP PGVPLP P
Sbjct: 413 NHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSP 455
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHC-CKTQQYKLAKYCDEIL 213
EP ITHG M T++ +DV+ A+ +TAF TS +PVILSFENH QQ K+A+YC I
Sbjct: 373 EPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSIF 432
Query: 214 GDLLLKECLPDYPCEPGVPLPPP 236
GD LL E L YP PGVPLP P
Sbjct: 433 GDALLIEPLDKYPLAPGVPLPSP 455
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 304 TGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNY 363
S N +S++VNY +P+KF+ F+ A ++N MSSF ET + L +EFV Y
Sbjct: 579 ASSEVNATEEMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEY 638
Query: 364 NKRQMSRIYPKGTRADSSNYMPQVKYGV 391
NK+Q+SRIYPKGTR DSSNYMPQ+ + V
Sbjct: 639 NKQQLSRIYPKGTRVDSSNYMPQLFWNV 666
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 13 VPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRA 72
V + L G F +W+E+ S +L +VD GFF++W N + D +++ + D R
Sbjct: 17 VVETLRRGSKFIKWDEETSSRNL---VTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRT 73
Query: 73 G 73
G
Sbjct: 74 G 74
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 110/144 (76%)
Query: 635 LSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYP 694
+S++VNY QP+ F F+ A++K+ H+ MSS ET L LK +FV+YNK+Q++RIYP
Sbjct: 514 MSALVNYIQPVHFTTFEQAQKKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYP 573
Query: 695 KGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKPDFMRRSD 754
KGTR DSSNY+PQ++WNAGCQ+V+LNFQ D+ M +N G FEYNG GYLLKP+FMR+ D
Sbjct: 574 KGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNGCSGYLLKPEFMRKLD 633
Query: 755 RSFDPFAESPVDGVIAAQCAVQLL 778
+ FDPF ES VDGV+A ++++
Sbjct: 634 KRFDPFTESTVDGVVAGTIEIKII 657
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 79/102 (77%), Gaps = 2/102 (1%)
Query: 456 IIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFE 515
++ G RC+ELDCWDGK D EPIITHG MCT++LFKDV+YA+ ++AF SD+PVILSFE
Sbjct: 360 LLTGCRCLELDCWDGK--DGEPIITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFE 417
Query: 516 NHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPP 557
NHC QQ LA+YC+E G+LLL + + +P +PGVPLP P
Sbjct: 418 NHCSVAQQKLLAQYCNEAFGELLLDKPIDGHPLKPGVPLPTP 459
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 64/82 (78%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQQYKLAKYCDEILG 214
EPIITHG MCT++LFKDV+YA+ ++AF SD+PVILSFENHC QQ LA+YC+E G
Sbjct: 378 EPIITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFG 437
Query: 215 DLLLKECLPDYPCEPGVPLPPP 236
+LLL + + +P +PGVPLP P
Sbjct: 438 ELLLDKPIDGHPLKPGVPLPTP 459
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 56/74 (75%)
Query: 314 LSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYP 373
+S++VNY QP+ F F+ A++K+ H+ MSS ET L LK +FV+YNK+Q++RIYP
Sbjct: 514 MSALVNYIQPVHFTTFEQAQKKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYP 573
Query: 374 KGTRADSSNYMPQV 387
KGTR DSSNY+PQ+
Sbjct: 574 KGTRVDSSNYVPQI 587
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 2 TKKFEFNWHIPVPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENR-DGD 60
++ E W VP+ L+ G F +W E+ S +E + +VD G+F++WK E + D
Sbjct: 8 VRQIELKWP-KVPEQLIKGDKFLKW-EEGSSGFIE--ILLRVDPKGYFLYWKIEGKEDTQ 63
Query: 61 VIELCQVSDIRAGGVPK 77
+++L V DIR K
Sbjct: 64 LLDLAYVRDIRCAKYAK 80
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 110/144 (76%)
Query: 635 LSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYP 694
+S++VNY QP+ F F+ A++K+ H+ MSS ET L LK +FV+YNK+Q++RIYP
Sbjct: 514 MSALVNYIQPVHFTTFEQAQKKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQLTRIYP 573
Query: 695 KGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKPDFMRRSD 754
KGTR DSSNY+PQ++WNAGCQ+V+LNFQ D+ M +N G FEYNG GYLLKP+FMR+ D
Sbjct: 574 KGTRVDSSNYVPQIYWNAGCQLVALNFQCFDVAMCVNLGVFEYNGCSGYLLKPEFMRKLD 633
Query: 755 RSFDPFAESPVDGVIAAQCAVQLL 778
+ FDPF ES VDGV+A ++++
Sbjct: 634 KRFDPFTESTVDGVVAGTIEIKII 657
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Query: 456 IIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFE 515
++ G RC+ELDCWDGK D EPIITHG MCT++ FKDV++A+ + AF S++PVILSFE
Sbjct: 360 LLTGCRCLELDCWDGK--DGEPIITHGFTMCTEVQFKDVVHAIAECAFKVSEYPVILSFE 417
Query: 516 NHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPP 557
NHC QQ LA+YC E G+LLL + +P +PGVPLP P
Sbjct: 418 NHCSVPQQKLLAQYCHEAFGELLLDNPIDGHPLKPGVPLPTP 459
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 60/82 (73%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQQYKLAKYCDEILG 214
EPIITHG MCT++ FKDV++A+ + AF S++PVILSFENHC QQ LA+YC E G
Sbjct: 378 EPIITHGFTMCTEVQFKDVVHAIAECAFKVSEYPVILSFENHCSVPQQKLLAQYCHEAFG 437
Query: 215 DLLLKECLPDYPCEPGVPLPPP 236
+LLL + +P +PGVPLP P
Sbjct: 438 ELLLDNPIDGHPLKPGVPLPTP 459
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 314 LSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYP 373
+S++VNY QP+ F F+ A++K+ H+ MSS ET L LK +FV+YNK+Q++RIYP
Sbjct: 514 MSALVNYIQPVHFTTFEQAQKKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQLTRIYP 573
Query: 374 KGTRADSSNYMPQVKY 389
KGTR DSSNY+PQ+ +
Sbjct: 574 KGTRVDSSNYVPQIYW 589
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 2 TKKFEFNWHIPVPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENR-DGD 60
++ E W VP+ L+ G F +W E S + +VD G+F++WK E + D
Sbjct: 8 VRQIELKWP-NVPEQLIKGDKFLKWEEGSSSF---TEILLRVDPKGYFLYWKIEGKEDSQ 63
Query: 61 VIELCQVSDIR 71
+++L + DIR
Sbjct: 64 LLDLAYLRDIR 74
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 108/154 (70%)
Query: 625 TGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNY 684
G + +SS+VNY QP KF F+ + QKN + +SSF E L +++FV+Y
Sbjct: 532 AGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDY 591
Query: 685 NKRQMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYL 744
NKRQMSRIYPKGTR DSSNYMPQ+FWNAGCQMV+LNFQT DLPMQ N FE+NG GYL
Sbjct: 592 NKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYL 651
Query: 745 LKPDFMRRSDRSFDPFAESPVDGVIAAQCAVQLL 778
LK +FMRR D+ F+PF+ +D V+A ++ ++
Sbjct: 652 LKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVI 685
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 456 IIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFE 515
++ G RCVELDCW GK DEEPIITHG M TDI FK+ I A+ ++AF TS +P+ILSFE
Sbjct: 349 LLSGCRCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFE 408
Query: 516 NHC-CKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPP 557
NH QQ K+A+YC I GD+LL E L +P +PGVPLP P
Sbjct: 409 NHVDSPRQQAKMAEYCRTIFGDMLLTEPLEKFPLKPGVPLPSP 451
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHC-CKTQQYKLAKYCDEIL 213
EPIITHG M TDI FK+ I A+ ++AF TS +P+ILSFENH QQ K+A+YC I
Sbjct: 369 EPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIF 428
Query: 214 GDLLLKECLPDYPCEPGVPLPPP 236
GD+LL E L +P +PGVPLP P
Sbjct: 429 GDMLLTEPLEKFPLKPGVPLPSP 451
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 56/84 (66%)
Query: 304 TGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNY 363
G + +SS+VNY QP KF F+ + QKN + +SSF E L +++FV+Y
Sbjct: 532 AGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDY 591
Query: 364 NKRQMSRIYPKGTRADSSNYMPQV 387
NKRQMSRIYPKGTR DSSNYMPQ+
Sbjct: 592 NKRQMSRIYPKGTRMDSSNYMPQM 615
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 17 LLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRAGGVP 76
L G F +W+ D + + + +VD G++++W ++++ + +++ + D R G
Sbjct: 17 LSQGERFIKWD---DETTVASPVILRVDPKGYYLYWTYQSKEMEFLDITSIRDTRFGKFA 73
Query: 77 K 77
K
Sbjct: 74 K 74
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 158/314 (50%), Gaps = 25/314 (7%)
Query: 451 ATIDKIIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPV 510
A I + KG RC+ELDCWDG ++EPII HG + ILF DV+ A+RD AF S +PV
Sbjct: 194 AYIRALCKGCRCLELDCWDGP--NQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 251
Query: 511 ILSFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPPSXXXXXXXXXXXX 570
ILS ENHC QQ +A++ ILG +LL D P + GV PS
Sbjct: 252 ILSLENHCSLEQQRVMARHLRAILGPILL-----DQPLD-GVTTSLPSP----------- 294
Query: 571 XXQEVEKRELELFRQGQFVIEDEEKEDATAAIPVXXXXXXXXXXXXXXXXXIQYTGSTTN 630
E K ++ L + + E+ + A V +Q+
Sbjct: 295 ---EQLKGKILLKGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDK 351
Query: 631 VH--PWLSSMVNYAQPIKFQGFDV-AEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKR 687
+ P LS M+ Y + + F GF + M+SF+E+ L L+ FV +N
Sbjct: 352 LKLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVS 411
Query: 688 QMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKP 747
+SRIYP G R DSSNY P WN GCQ+V+LNFQTP M + G F+ NG CGY+LKP
Sbjct: 412 CLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKP 471
Query: 748 DFMRRSDRSFDPFA 761
F+R + +F+ A
Sbjct: 472 AFLRDPNTTFNSRA 485
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 105/234 (44%), Gaps = 23/234 (9%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQQYKLAKYCDEILG 214
EPII HG + ILF DV+ A+RD AF S +PVILS ENHC QQ +A++ ILG
Sbjct: 217 EPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLRAILG 276
Query: 215 DLLLKECLPDYPCEPGVPLPPPSXXXXXXXXXXXXXXQEVEKRELELFRQGQFVIEDEEK 274
+LL D P + GV PS E K ++ L + +
Sbjct: 277 PILL-----DQPLD-GVTTSLPSP--------------EQLKGKILLKGKKLGGLLPAGG 316
Query: 275 EDATAAIPVXXXXXXXXXXXXXXXXXIQYTGSTTNVH--PWLSSMVNYAQPIKFQGFDV- 331
E+ + A V +Q+ + P LS M+ Y + + F GF
Sbjct: 317 ENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMIIYCKSVHFGGFSSP 376
Query: 332 AEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNYMP 385
+ M+SF+E+ L L+ FV +N +SRIYP G R DSSNY P
Sbjct: 377 GTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSP 430
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 158/314 (50%), Gaps = 25/314 (7%)
Query: 451 ATIDKIIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPV 510
A I + KG RC+ELDCWDG ++EPII HG + ILF DV+ A+RD AF S +PV
Sbjct: 196 AYIRALCKGCRCLELDCWDGP--NQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 253
Query: 511 ILSFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPPSXXXXXXXXXXXX 570
ILS ENHC QQ +A++ ILG +LL D P + GV PS
Sbjct: 254 ILSLENHCSLEQQRVMARHLRAILGPILL-----DQPLD-GVTTSLPSP----------- 296
Query: 571 XXQEVEKRELELFRQGQFVIEDEEKEDATAAIPVXXXXXXXXXXXXXXXXXIQYTGSTTN 630
E K ++ L + + E+ + A V +Q+
Sbjct: 297 ---EQLKGKILLKGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDK 353
Query: 631 VH--PWLSSMVNYAQPIKFQGFDV-AEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKR 687
+ P LS M+ Y + + F GF + M+SF+E+ L L+ FV +N
Sbjct: 354 LKLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVS 413
Query: 688 QMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKP 747
+SRIYP G R DSSNY P WN GCQ+V+LNFQTP M + G F+ NG CGY+LKP
Sbjct: 414 CLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKP 473
Query: 748 DFMRRSDRSFDPFA 761
F+R + +F+ A
Sbjct: 474 AFLRDPNTTFNSRA 487
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 105/234 (44%), Gaps = 23/234 (9%)
Query: 155 EPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQQYKLAKYCDEILG 214
EPII HG + ILF DV+ A+RD AF S +PVILS ENHC QQ +A++ ILG
Sbjct: 219 EPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLRAILG 278
Query: 215 DLLLKECLPDYPCEPGVPLPPPSXXXXXXXXXXXXXXQEVEKRELELFRQGQFVIEDEEK 274
+LL D P + GV PS E K ++ L + +
Sbjct: 279 PILL-----DQPLD-GVTTSLPSP--------------EQLKGKILLKGKKLGGLLPAGG 318
Query: 275 EDATAAIPVXXXXXXXXXXXXXXXXXIQYTGSTTNVH--PWLSSMVNYAQPIKFQGFDV- 331
E+ + A V +Q+ + P LS M+ Y + + F GF
Sbjct: 319 ENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMIIYCKSVHFGGFSSP 378
Query: 332 AEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNYMP 385
+ M+SF+E+ L L+ FV +N +SRIYP G R DSSNY P
Sbjct: 379 GTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSP 432
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 197 CCKTQQYKLAKYCDEILGDLLLKECLPDYPC----EPGVPLPPP 236
CC+ + ++ Y D+IL D+++ +P C + +PL PP
Sbjct: 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPP 267
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 518 CCKTQQYKLAKYCDEILGDLLLKECLPDYPC----EPGVPLPPP 557
CC+ + ++ Y D+IL D+++ +P C + +PL PP
Sbjct: 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPP 267
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 15 QPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRAGG 74
Q LLD VF W ED D +L V K YG K +D V +C +D+ G
Sbjct: 237 QDLLDAYVF--WKEDGDEEELRR--VIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRG 292
Query: 75 VPK 77
+ K
Sbjct: 293 IAK 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,079,800
Number of Sequences: 62578
Number of extensions: 851567
Number of successful extensions: 1427
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1377
Number of HSP's gapped (non-prelim): 41
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)