RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16203
(806 letters)
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 281 bits (718), Expect = 7e-83
Identities = 157/351 (44%), Positives = 201/351 (57%), Gaps = 18/351 (5%)
Query: 446 QKTQTATIDKII----KGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDT 501
Q + ++ + G RCVELDCW GK DEEPIITHG M TDI FK+ I A+ ++
Sbjct: 335 QFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAES 394
Query: 502 AFVTSDFPVILSFENHCC-KTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPPSLL 560
AF TS +P+ILSFENH QQ K+A+YC I GD+LL E L +P +PGVPLP P L
Sbjct: 395 AFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFGDMLLTEPLEKFPLKPGVPLPSPEDL 454
Query: 561 KRKILIKNKRLKQEVEKRELELFRQGQFVIEDEEKEDATAAIPVPE-------------E 607
+ KILIKNK+ + + A E
Sbjct: 455 RGKILIKNKKNQFSGPTSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEES 514
Query: 608 KKDEPEPEADAPPPIQYTGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAE 667
+ E G + +SS+VNY QP KF F+ + QKN + +SSF E
Sbjct: 515 GNLDEEEIKKMQSDEGTAGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTE 574
Query: 668 TAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLP 727
L +++FV+YNKRQMSRIYPKGTR DSSNYMPQ+FWNAGCQMV+LNFQT DLP
Sbjct: 575 LKAYDLLSKASVQFVDYNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLP 634
Query: 728 MQLNQGKFEYNGNCGYLLKPDFMRRSDRSFDPFAESPVDGVIAAQCAVQLL 778
MQ N FE+NG GYLLK +FMRR D+ F+PF+ +D V+A ++ ++
Sbjct: 635 MQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVI 685
Score = 172 bits (436), Expect = 7e-45
Identities = 115/305 (37%), Positives = 149/305 (48%), Gaps = 22/305 (7%)
Query: 102 MKHPQD---IWKSQNTCEPGVPLPPPSLLK--RKILIKNKRLKQEVEKRELELFRQGNEP 156
M P + I S NT S + R++L+ R VE + EP
Sbjct: 314 MTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRC---VELDCWKGKPPDEEP 370
Query: 157 IITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCC-KTQQYKLAKYCDEILGD 215
IITHG M TDI FK+ I A+ ++AF TS +P+ILSFENH QQ K+A+YC I GD
Sbjct: 371 IITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFGD 430
Query: 216 LLLKECLPDYPCEPGVPLPPPSLLKRKILIKNKRLKQEVEKRELELFRQGQFVIEDEEKE 275
+LL E L +P +PGVPLP P L+ KILIKNK+ + +
Sbjct: 431 MLLTEPLEKFPLKPGVPLPSPEDLRGKILIKNKKNQFSGPTSSSKDTGGEAEGSSPPSAP 490
Query: 276 DATAAIPVPE-------------EKKDEPEPEADAPPPIQYTGSTTNVHPWLSSMVNYAQ 322
A E + E G + +SS+VNY Q
Sbjct: 491 AVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEVTAYEEMSSLVNYIQ 550
Query: 323 PIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSN 382
P KF F+ + QKN + +SSF E L +++FV+YNKRQMSRIYPKGTR DSSN
Sbjct: 551 PTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDYNKRQMSRIYPKGTRMDSSN 610
Query: 383 YMPQV 387
YMPQ+
Sbjct: 611 YMPQM 615
Score = 62.3 bits (150), Expect = 4e-10
Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 53/151 (35%)
Query: 13 VPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRA 72
V L G F +W+++ + +VD G++++W ++++ + +++ + D R
Sbjct: 13 VKAYLSQGERFIKWDDETTV---ASPVILRVDPKGYYLYWTYQSKEMEFLDITSIRDTRF 69
Query: 73 GGVPK--------------------------------------------------TWQEG 82
G K W E
Sbjct: 70 GKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAED 129
Query: 83 LRKITHNNKMNNVCPRTNLMKHPQDIWKSQN 113
+ + + N T L K + N
Sbjct: 130 VLALVKHPLTANASRSTFLDKILVKLKMQLN 160
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 275 bits (704), Expect = 8e-81
Identities = 154/337 (45%), Positives = 210/337 (62%), Gaps = 29/337 (8%)
Query: 446 QKTQTATIDKII----KGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDT 501
Q T ++++ G RC+ELDCWDGK D EPIITHG MCT++LFKDV+YA+ ++
Sbjct: 346 QLTGKSSVEIYRQVLLTGCRCLELDCWDGK--DGEPIITHGFTMCTEVLFKDVVYAIAES 403
Query: 502 AFVTSDFPVILSFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPPSLLK 561
AF SD+PVILSFENHC QQ LA+YC+E G+LLL + + +P +PGVPLP P L+
Sbjct: 404 AFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFGELLLDKPIDGHPLKPGVPLPTPYDLR 463
Query: 562 RKILIKNKRLKQEVEKRELELFRQGQFVIEDEEKEDATAAIPVPEEKKDEPEPEADAPPP 621
+KILIKNK++ + + +E +
Sbjct: 464 KKILIKNKKMHKGTGDD-----------------------EELAGLTDEEKKKIEKEKKD 500
Query: 622 IQYTGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEF 681
+S++VNY QP+ F F+ A++K+ H+ MSS ET L LK +F
Sbjct: 501 AGTAAKEAEAAEEMSALVNYIQPVHFTTFEQAQKKDRHYEMSSMVETQALNKLKDNPEDF 560
Query: 682 VNYNKRQMSRIYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNC 741
V+YNK+Q++RIYPKGTR DSSNY+PQ++WNAGCQ+V+LNFQ D+ M +N G FEYNG
Sbjct: 561 VDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNGCS 620
Query: 742 GYLLKPDFMRRSDRSFDPFAESPVDGVIAAQCAVQLL 778
GYLLKP+FMR+ D+ FDPF ES VDGV+A ++++
Sbjct: 621 GYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKII 657
Score = 171 bits (434), Expect = 2e-44
Identities = 111/290 (38%), Positives = 155/290 (53%), Gaps = 31/290 (10%)
Query: 102 MKHPQD---IWKSQNTCEPGVPLPPPSLLKRKILIKNKRLKQEVEKRELELFRQGN-EPI 157
MK I S NT G L S ++ + L EL+ + + EPI
Sbjct: 325 MKLTLAAYYINSSHNTYLTGHQLTGKSSVEIYR----QVLLTGCRCLELDCWDGKDGEPI 380
Query: 158 ITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQQYKLAKYCDEILGDLL 217
ITHG MCT++LFKDV+YA+ ++AF SD+PVILSFENHC QQ LA+YC+E G+LL
Sbjct: 381 ITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFGELL 440
Query: 218 LKECLPDYPCEPGVPLPPPSLLKRKILIKNKRLKQEVEKRELELFRQGQFVIEDEEKEDA 277
L + + +P +PGVPLP P L++KILIKNK++ +
Sbjct: 441 LDKPIDGHPLKPGVPLPTPYDLRKKILIKNKKMHKGTGDD-------------------- 480
Query: 278 TAAIPVPEEKKDEPEPEADAPPPIQYTGSTTNVHPWLSSMVNYAQPIKFQGFDVAEQKNI 337
+ +E + +S++VNY QP+ F F+ A++K+
Sbjct: 481 ---EELAGLTDEEKKKIEKEKKDAGTAAKEAEAAEEMSALVNYIQPVHFTTFEQAQKKDR 537
Query: 338 HHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNYMPQV 387
H+ MSS ET L LK +FV+YNK+Q++RIYPKGTR DSSNY+PQ+
Sbjct: 538 HYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQI 587
Score = 60.4 bits (145), Expect = 2e-09
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 KKFEFNWHIPVPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSEN-RDGDV 61
++ E W VP+ L+ G F +W E + +VD G+F++WK E D +
Sbjct: 9 RQIELKW-PKVPEQLIKGDKFLKWEEGSSG---FIEILLRVDPKGYFLYWKIEGKEDTQL 64
Query: 62 IELCQVSDIRAGGVPKT-WQEGLRKITHNNKMNN 94
++L V DIR K + +++ N +N
Sbjct: 65 LDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSN 98
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 266 bits (679), Expect = 7e-79
Identities = 126/355 (35%), Positives = 168/355 (47%), Gaps = 23/355 (6%)
Query: 453 IDKIIKGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVIL 512
I + KG RC+ELDCWDG ++ PII HG + ILF DV+ A+RD AF S +PVIL
Sbjct: 198 IRALCKGCRCLELDCWDGPNQE--PIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVIL 255
Query: 513 SFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPPSLLKRKILIKNKRLK 572
S ENHC QQ +A++ ILG +LL + L LP P LK KIL+K K+L
Sbjct: 256 SLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTS----LPSPEQLKGKILLKGKKLG 311
Query: 573 QEVEKRELELFRQGQFVIEDEEKEDATAAIPVPEEKKDEPEPEADAPPPIQYTGSTTNVH 632
+ E E E A+ + K +
Sbjct: 312 GLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQHK--------------PKEDKLKLV 357
Query: 633 PWLSSMVNYAQPIKFQGFDVAEQKN-IHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSR 691
P LS M+ Y + + F GF + M+SF+E+ L L+ FV +N +SR
Sbjct: 358 PELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSR 417
Query: 692 IYPKGTRADSSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKPDFMR 751
IYP G R DSSNY P WN GCQ+V+LNFQTP M + G F+ NG CGY+LKP F+R
Sbjct: 418 IYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLR 477
Query: 752 RSDRSFDPFAESPVDGVIAAQCAVQLLYCYAYVLSVKETNLNGTMVSAVDFEFGG 806
+ +F+ A + + V+ L N N + V E G
Sbjct: 478 DPNTTFNSRALTQGPWWRPERLRVR--IISGQQLPKVNKNKNSIVDPKVIVEIHG 530
Score = 160 bits (405), Expect = 2e-41
Identities = 85/249 (34%), Positives = 110/249 (44%), Gaps = 21/249 (8%)
Query: 154 NEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQQYKLAKYCDEIL 213
EPII HG + ILF DV+ A+RD AF S +PVILS ENHC QQ +A++ IL
Sbjct: 218 QEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLRAIL 277
Query: 214 GDLLLKECLPDYPCEPGVPLPPPSLLKRKILIKNKRLKQEVEKRELELFRQGQFVIEDEE 273
G +LL + L LP P LK KIL+K K+L + E E
Sbjct: 278 GPILLDQPLDGVTTS----LPSPEQLKGKILLKGKKLGGLLPAGGENGSEATDVSDEVEA 333
Query: 274 KEDATAAIPVPEEKKDEPEPEADAPPPIQYTGSTTNVHPWLSSMVNYAQPIKFQGFDVAE 333
E A+ + K + P LS M+ Y + + F GF
Sbjct: 334 AEMEDEAVRSQVQHK--------------PKEDKLKLVPELSDMIIYCKSVHFGGFSSPG 379
Query: 334 QKN-IHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNYMPQV--KYG 390
+ M+SF+E+ L L+ FV +N +SRIYP G R DSSNY P G
Sbjct: 380 TSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGG 439
Query: 391 VLIVILRVS 399
IV L
Sbjct: 440 CQIVALNFQ 448
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 266 bits (681), Expect = 4e-77
Identities = 155/378 (41%), Positives = 205/378 (54%), Gaps = 57/378 (15%)
Query: 458 KGKRCVELDCWDGKGEDEEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENH 517
G RCVELD W G+ +EEP ITHG M T++ +DV+ A+ +TAF TS +PVILSFENH
Sbjct: 355 WGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENH 414
Query: 518 CCKTQ-QYKLAKYCDEILGDLLLKECLPDYPCEPGVPLPPPSLLKRKILIKNKRLK---- 572
+ Q K+A+YC I GD LL E L YP PGVPLP P L +IL+KNK+
Sbjct: 415 VDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKKRHRPSA 474
Query: 573 --QEVEKRELELFRQGQFVIEDEEKEDATAAI---------------------------- 602
+ R+ L + + E + ++
Sbjct: 475 GGPDSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSCPGLSNGEEVGLEKPSLEPQ 534
Query: 603 ----------------------PVPEEKKDEPEPEADAPPPIQYTGSTTNVHPWLSSMVN 640
+E+++E S N +S++VN
Sbjct: 535 KSLGDEGLNRGPYVLGPADREDEEEDEEEEEQTDPKKPTTDEGTASSEVNATEEMSTLVN 594
Query: 641 YAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRAD 700
Y +P+KF+ F+ A ++N MSSF ET + L +EFV YNK+Q+SRIYPKGTR D
Sbjct: 595 YIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEYNKQQLSRIYPKGTRVD 654
Query: 701 SSNYMPQVFWNAGCQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKPDFMRRSDRSFDPF 760
SSNYMPQ+FWN GCQ+V+LNFQT D+ MQLN G FEYNG GYLLKP+FMRR D+SFDPF
Sbjct: 655 SSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPF 714
Query: 761 AESPVDGVIAAQCAVQLL 778
E VDG++A V+++
Sbjct: 715 TEVIVDGIVANALRVKVI 732
Score = 158 bits (400), Expect = 3e-40
Identities = 100/294 (34%), Positives = 138/294 (46%), Gaps = 57/294 (19%)
Query: 151 RQGNEPIITHGKAMCTDILFKDVIYALRDTAFVTSDFPVILSFENHCCKTQ-QYKLAKYC 209
EP ITHG M T++ +DV+ A+ +TAF TS +PVILSFENH + Q K+A+YC
Sbjct: 369 PPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYC 428
Query: 210 DEILGDLLLKECLPDYPCEPGVPLPPPSLLKRKILIKNKRLK------QEVEKRELELFR 263
I GD LL E L YP PGVPLP P L +IL+KNK+ + R+ L +
Sbjct: 429 RSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKKRHRPSAGGPDSAGRKRPLEQ 488
Query: 264 QGQFVIEDEEKEDATAAI------------------------------------------ 281
+ E + ++
Sbjct: 489 SNSALSESSAATEPSSPQLGSPSSDSCPGLSNGEEVGLEKPSLEPQKSLGDEGLNRGPYV 548
Query: 282 --------PVPEEKKDEPEPEADAPPPIQYTGSTTNVHPWLSSMVNYAQPIKFQGFDVAE 333
+E+++E S N +S++VNY +P+KF+ F+ A
Sbjct: 549 LGPADREDEEEDEEEEEQTDPKKPTTDEGTASSEVNATEEMSTLVNYIEPVKFKSFEAAR 608
Query: 334 QKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNYMPQV 387
++N MSSF ET + L +EFV YNK+Q+SRIYPKGTR DSSNYMPQ+
Sbjct: 609 KRNKCFEMSSFVETKAMEQLTKSPMEFVEYNKQQLSRIYPKGTRVDSSNYMPQL 662
Score = 54.6 bits (130), Expect = 1e-07
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 13 VPQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRA 72
V + L G F +W+E+ S +L +VD GFF++W N + D +++ + D R
Sbjct: 17 VVETLRRGSKFIKWDEETSSRNL---VTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRT 73
Query: 73 GGVPKTWQE 81
G + ++
Sbjct: 74 GRYARLPKD 82
Score = 33.1 bits (74), Expect = 0.45
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 12/100 (12%)
Query: 14 PQPLLDGCVFDRWNEDKDSSDLEPNCVFKVDTYGFFIFWKSENRDGDVIELCQVSDIRAG 73
+ D + + + LE + + + + V D A
Sbjct: 77 ARLPKDPKIREVLGFGGPDARLEEKL--------MTVVSGPDPVNTVFLNFMAVQDDTA- 127
Query: 74 GVPKTWQEGLRKITHNNKMNNVCPRTNLMKHPQDIWKSQN 113
K W E L K+ N N T L K + N
Sbjct: 128 ---KVWSEELFKLAMNILAQNASRNTFLRKAYTKLKLQVN 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-07
Identities = 67/569 (11%), Positives = 143/569 (25%), Gaps = 168/569 (29%)
Query: 329 FDVAEQKN-----IHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIYPKGTRADSSNY 383
F+ E + + +F + ++ ++ K ++ I +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLR 66
Query: 384 MPQVKYGVLIVILR----------VSDIEDLKFESITLESLRNE--------KGFQKFHR 425
L L V ++ + ++ + + ++ E + + +
Sbjct: 67 --------LFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRD 117
Query: 426 KQQKDLDTLQKKHLKEKAAVQKTQTATIDKIIKGKRCVELDCWDGKGEDEEPIITHGKAM 485
+ D K ++ K + A + EL + ++ G
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALL----------ELR-------PAKNVLIDGVLG 160
Query: 486 C--TDILFKDVIYALRDTAFVTS-DFPVI-LSFENHCCKTQQYKLAKYCDEILGDLLLK- 540
T + + DF + L+ +N C + + L E+L LL +
Sbjct: 161 SGKT-WV---ALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVL-----EMLQKLLYQI 209
Query: 541 ----ECLPDYPCEPGVPLPPPSLLKR-KILIKNKRLKQ------EV-EKRELELF----- 583
D+ L S+ + L+K+K + V + F
Sbjct: 210 DPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 584 -----RQGQFVIEDEEKEDATAAIPVPEEKKDEPEPEA-------------DAPPPIQYT 625
R Q + D T I + E D P
Sbjct: 268 ILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----- 320
Query: 626 GSTTNVHPWLSSMVNYA---QPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFV 682
+P S++ + + + + + S +
Sbjct: 321 -EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 683 NYNKRQMSRIYPKGTRADSSNYMPQV---FWNAG---CQMVSLN-FQTPDLPMQLNQGKF 735
++P S++ + W MV +N L + +
Sbjct: 380 ---------VFP-----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPK 422
Query: 736 E-----YNGNCGYLLKPDFMR----------RSDRSFDPFAESP--VDGVIAAQCAVQLL 778
E + +K + ++FD P +D
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--------- 473
Query: 779 YCY-AYVLSVKETNLNGTMVSAV--DFEF 804
Y + + L E T+ V DF F
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 50.6 bits (120), Expect = 6e-07
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 405 KFESITLESLRNEKGFQKFHRKQQKDLDTLQKKHLKEKAAVQKTQTATIDKIIKGK 460
+ ++ +L L+ K F K +KQ+K+L L++K K + + + + + + +
Sbjct: 15 EPQTASLAELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPR 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-05
Identities = 87/534 (16%), Positives = 151/534 (28%), Gaps = 197/534 (36%)
Query: 157 IITHGKAMC-----TDILFKDVIYA--LRDT----------AFVTSDFPV--------IL 191
++HG T F A L++ F D P L
Sbjct: 10 TLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 192 SFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGV-----PLPPPS---LLKRKI 243
+ + + K+ ++ D++L +L L E Y + L + L+K K
Sbjct: 66 GYVSS--LVEPSKVGQF-DQVL-NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 244 LIKN--------KR---------LKQEVEKRELELFRQ--GQFVIED--EE--------- 273
LIKN KR L + V + +L GQ +D EE
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 274 --KED--ATAAIPVPEEKKDEPEPE---------------ADAPPPIQYTGSTTNVHP-- 312
D +A + E + + E P Y S P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 313 WLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAI-------EFVNYNK 365
+ + +Y K GF E ++ + G + + AI F +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGAT----GHSQGLVTAVAIAETDSWESFFV-SV 296
Query: 366 RQMSRI-----------YPKGT-----RADSSN-------YMPQVKYGVLIVILRVSDIE 402
R+ + YP + DS M L +S++
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----------LSISNLT 345
Query: 403 DLKFESITLE-------------SLRNEKGFQKF----HRKQQKDLDTLQKKHLKEKAAV 445
+ + + SL N G + + L L K KA
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPP---QSLYGLNLTLRKAKAPS 400
Query: 446 QKTQTATIDKIIKGKRCVE-----LDCWDGKGEDEEPIIT--HGKAM--CTDILFKDVIY 496
Q+ +I +R ++ L P+ + H + +D++ KD+
Sbjct: 401 GLDQS----RIPFSERKLKFSNRFL-----------PVASPFHSHLLVPASDLINKDL-- 443
Query: 497 ALRDTAFVTSD--FPVILSFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPC 548
+ +F D PV +F+ L I ++ +C+ P
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGS-------DLRVLSGSISERIV--DCIIRLPV 488
Score = 39.6 bits (92), Expect = 0.005
Identities = 60/363 (16%), Positives = 100/363 (27%), Gaps = 124/363 (34%)
Query: 478 IITHGKAMC-----TDILFKDVIYA--LRDT----------AFVTSDFPV--------IL 512
++HG T F A L++ F D P L
Sbjct: 10 TLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 513 SFENHCCKTQQYKLAKYCDEILGDLLLKECLPDYPCEPGV-----PLPPPS---LLKRKI 564
+ + + K+ ++ D++L +L L E Y + L + L+K K
Sbjct: 66 GYVSS--LVEPSKVGQF-DQVL-NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 565 LIKN--------KR---------LKQEVEKRELELFRQ--GQFVIED--EE--------- 594
LIKN KR L + V + +L GQ +D EE
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 595 --KED--ATAAIPVPEEKKDEPEPE---------------ADAPPPIQYTGSTTNVHP-- 633
D +A + E + + E P Y S P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 634 WLSSMVNYAQPIKFQGFDVAEQKNIHHNMSSFAETAGLGYLKSQAIEFVNYNKRQMSRIY 693
+ + +Y K GF E ++ + G + + AI +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGAT----GHSQGLVTAVAIA--------ET--- 286
Query: 694 PKGTRAD----SSNYMPQVFWNAG--CQMVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKP 747
+ + +F+ G C + LP + + N G P
Sbjct: 287 --DSWESFFVSVRKAITVLFF-IGVRCYEA---YPNTSLPPSILE-DSLENNE-G---VP 335
Query: 748 DFM 750
M
Sbjct: 336 SPM 338
Score = 35.0 bits (80), Expect = 0.14
Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 53/198 (26%)
Query: 595 KEDATAAIPVPEEK--KDEPEPEADAPPPIQYTGSTTN-VHPWLSSMVNYAQPIK--FQG 649
+E +P P E D+ EP A ++ G ++ V P S + + Q +
Sbjct: 34 QEQFNKILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEP--SKVGQFDQVLNLCLTE 90
Query: 650 FDVA--EQKNIHHNMSSFAETAGLGYLKSQAIEFVNY------NKRQMSRIYP----KGT 697
F+ E +IH + + +K++ + NY KR + +
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 698 RADSSNYMPQVFWNAGCQ---------MVSLNFQTPDLPMQLNQGKFEYNGNCGYLLKPD 748
++ + +F G Q + L +QT Y+ L+ D
Sbjct: 150 GEGNAQLVA-IF---GGQGNTDDYFEELRDL-YQT-------------YHV----LVG-D 186
Query: 749 FMRRSDRSFDPFAESPVD 766
++ S + + +D
Sbjct: 187 LIKFSAETLSELIRTTLD 204
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.65
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 139 KQEVEKRE--LELFRQGNEPII 158
KQ ++K + L+L+ + P +
Sbjct: 19 KQALKKLQASLKLYADDSAPAL 40
Score = 27.6 bits (60), Expect = 9.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 13/34 (38%)
Query: 251 KQEVEKRE--LELFRQGQFVIEDEEKEDATA-AI 281
KQ ++K + L+L+ + A A AI
Sbjct: 19 KQALKKLQASLKLY----------ADDSAPALAI 42
Score = 27.6 bits (60), Expect = 9.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 13/34 (38%)
Query: 572 KQEVEKRE--LELFRQGQFVIEDEEKEDATA-AI 602
KQ ++K + L+L+ + A A AI
Sbjct: 19 KQALKKLQASLKLY----------ADDSAPALAI 42
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 32.6 bits (75), Expect = 0.66
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 267 FVIEDEEKEDATAAIPVPEEKKDEPEPEADAPPPIQYTGSTT 308
++ D + + AI P E AD Q +G TT
Sbjct: 155 QLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTT 196
Score = 32.6 bits (75), Expect = 0.66
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 588 FVIEDEEKEDATAAIPVPEEKKDEPEPEADAPPPIQYTGSTT 629
++ D + + AI P E AD Q +G TT
Sbjct: 155 QLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTT 196
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 31.4 bits (72), Expect = 1.5
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 268 VIEDEEKEDATAAIPVPEEKKDEPEPEADAPPPIQYTGSTT 308
+I E E+ + E PE ++ +Q +G +T
Sbjct: 154 IIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGST 194
Score = 31.4 bits (72), Expect = 1.5
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 589 VIEDEEKEDATAAIPVPEEKKDEPEPEADAPPPIQYTGSTT 629
+I E E+ + E PE ++ +Q +G +T
Sbjct: 154 IIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGST 194
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 2.0
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 398 VSDIEDLKFESITLESLR-----NEKGFQKFHRKQQKDLDTLQKKHLKEKAAVQKTQTAT 452
++ + L E ES+R K Q+ + ++K K+ + Q+
Sbjct: 74 IAQADRLTQEP---ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 453 IDKIIKGKRCVE 464
++K R +
Sbjct: 131 VEKNKINNRIAD 142
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation
pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A
3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Length = 145
Score = 28.4 bits (63), Expect = 5.6
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 673 YLKSQAIEFVNYNKRQMS-RIYPKGTRADSSNYM---------PQVFWNAGCQMVSLNFQ 722
+KS +K + R+ PKG +S +Y+ P+ A + LN +
Sbjct: 30 VIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAK 89
Query: 723 TPDLPMQLNQGK--FEYNGNCGYLLKPDFMRRSD 754
+ +Q F + G+ F+RR
Sbjct: 90 GEETKAMESQRAYRFVQGKDWGF---KKFIRRDF 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,662,792
Number of extensions: 777186
Number of successful extensions: 1573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1542
Number of HSP's successfully gapped: 35
Length of query: 806
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 705
Effective length of database: 3,881,772
Effective search space: 2736649260
Effective search space used: 2736649260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)