BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16204
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 105/232 (45%), Gaps = 56/232 (24%)
Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457
G S ++ K AR PS IFID+VD+L RG + E EASRR K ELL+QM+G+ +
Sbjct: 126 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN- 183
Query: 458 LYEDKIIMILAATNHPYQLLT----------------LCLEGVVIDVNL----------D 491
+ + +++L ATN P+QL + L + ++N+ D
Sbjct: 184 --DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED 241
Query: 492 FHKISKMLEGYTGSDIANLARDAAMMSIR------------------RKIMGQTPAQIKE 533
+ + M EGY+GSDIA + +DA M IR RK+ +P
Sbjct: 242 YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGA 301
Query: 534 IKQEDIDLPVTE--------KDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 577
I+ D+ E KDF +AI R +V DL K + + +FG
Sbjct: 302 IEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 63/99 (63%), Gaps = 7/99 (7%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
IL PNV+W VAGL AK L+EA++LP P FK + S GTGK+ L
Sbjct: 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 100
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMV 302
AKAVATE +TFF+VSSS L SK+ GESEKLV+ LF M
Sbjct: 101 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 139
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 161/388 (41%), Gaps = 88/388 (22%)
Query: 207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTG 259
L IL PNV+W VAGL AK L+EA++LP P FK + S GTG
Sbjct: 22 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTG 81
Query: 260 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGV 319
K+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF M NK
Sbjct: 82 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA------RENK------- 128
Query: 320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESG--PSIFSVMVDGLGKGPWSM 377
P+ F I Q++ ALT E++ S + V ++G+G +
Sbjct: 129 ----PSIIF-----IDQVD------ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 173
Query: 378 VAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP-------STIF-IDEVDSLCS 429
+ + AT+ W + F+ R Y P +T+F I+ D+ C
Sbjct: 174 LVLGATNIPWQLDSAIRRR------------FERRIYIPLPDLAARTTMFEINVGDTPCV 221
Query: 430 MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN 489
+ D L +G + S D +++ A P + + DV+
Sbjct: 222 LTKEDYRT---------LGAMTEGYSGS---DIAVVVKDALMQPIRKIQSATH--FKDVS 267
Query: 490 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFR 549
+ + K+ G D A M T + E+K+ D+ T KDF
Sbjct: 268 TEDDETRKLTPCSPGDDGAIE-------------MSWTDIEADELKEPDL----TIKDFL 310
Query: 550 EAIARCRKSVTAHDLSKYDSWMNEFGSH 577
+AI R +V DL K + + +FG
Sbjct: 311 KAIKSTRPTVNEDDLLKQEQFTRDFGQE 338
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASR 441
AT F+ G ++ + ARC P+ IFIDE+DSL S RG D EHE+SR
Sbjct: 143 ATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG-DGEHESSR 201
Query: 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV---------------I 486
R K E L+Q+DG +S ED+ I+++ ATN P ++ +V I
Sbjct: 202 RIKTEFLVQLDGATTS-SEDR-ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 259
Query: 487 DVNL-----------DFHKISKMLEGYTGSDIANLARDAAMMSIRR----KIMGQTPAQI 531
+NL + +I + + ++G+D+ L R+A++ IR I TP Q+
Sbjct: 260 VINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQV 319
Query: 532 KEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
+ P+ DF A R SV+ DL Y++W FG
Sbjct: 320 R---------PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 7/108 (6%)
Query: 199 FEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEAL 251
EP +IE + +I+ + P V W +AG+ AKA ++E +V P + P+ F K L
Sbjct: 62 LEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGIL 121
Query: 252 ERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
GTGKT++ K +A++ G TFF++S+S+LTSK+ GE EK+VR LF
Sbjct: 122 LFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALF 169
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 160/384 (41%), Gaps = 88/384 (22%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
IL PNV+W VAGL AK L+EA++LP P FK + S GTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGE 323
AKAVATE +TFF+VSSS L SK+ GESEKLV+ LF M NK
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA------RENK----------- 110
Query: 324 PTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESG--PSIFSVMVDGLGKGPWSMVAVV 381
P+ F I Q++ ALT E++ S + V ++G+G ++ +
Sbjct: 111 PSIIF-----IDQVD------ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP-------STIF-IDEVDSLCSMRGS 433
AT+ W + F+ R Y P +T+F I+ D+ C +
Sbjct: 160 ATNIPWQLDSAIRRR------------FERRIYIPLPDLAARTTMFEINVGDTPCVLTKE 207
Query: 434 DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFH 493
D L +G + S D +++ A P + + DV+ +
Sbjct: 208 DYRT---------LGAMTEGYSGS---DIAVVVKDALMQPIRKIQSATH--FKDVSTEDD 253
Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553
+ K+ G D A M T + E+K+ D+ T KDF +AI
Sbjct: 254 ETRKLTPCSPGDDGAIE-------------MSWTDIEADELKEPDL----TIKDFLKAIK 296
Query: 554 RCRKSVTAHDLSKYDSWMNEFGSH 577
R +V DL K + + +FG
Sbjct: 297 STRPTVNEDDLLKQEQFTRDFGQE 320
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSL-CSMRGSDSEHEAS 440
AT F + G ++ + AR PS IFID+VDSL C R + EH+AS
Sbjct: 174 ATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR--EGEHDAS 231
Query: 441 RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL---------- 490
RR K E LI+ DG+ S+ D ++++ ATN P +L L + V +
Sbjct: 232 RRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289
Query: 491 ----------------DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 534
+ ++++M +GY+GSD+ LA+DAA+ IR P Q+K +
Sbjct: 290 LLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE----LKPEQVKNM 345
Query: 535 KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
++ + DF E++ + ++SV+ L Y W +FG
Sbjct: 346 SASEMR-NIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 202 SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERH 254
+L + +I+ N V+++ +AG AK LQE ++LP++ PE F + L
Sbjct: 96 NLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFG 155
Query: 255 SHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFL 305
G GKTMLAKAVA E TFFN+S+++LTSKY GE EKLVR LF + L
Sbjct: 156 PPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL 206
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 154/381 (40%), Gaps = 84/381 (22%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTMLA 264
L PNV+W VAGL AK L+EA++LP P FK + S GTGK+ LA
Sbjct: 18 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 77
Query: 265 KAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEP 324
KAVATE +TFF+VSSS L SK+ GESEKLV+ LF M NK P
Sbjct: 78 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA------RENK-----------P 120
Query: 325 TTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATH 384
+ F L R G + +R E V ++G+G ++ + AT+
Sbjct: 121 SIIFIDEVDALTGTR----GEGESEASRRIKTE-----LLVQMNGVGNDSQGVLVLGATN 171
Query: 385 FTWGKKGTCQSHEGHSGRINKNSLFQARCYAP-------STIF-IDEVDSLCSMRGSDSE 436
W + F+ R Y P +T+F I+ D+ C + D
Sbjct: 172 IPWQLDSAIRRR------------FERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYR 219
Query: 437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKIS 496
L +G + S D +++ A P + + DV+ + +
Sbjct: 220 T---------LGAMTEGYSGS---DIAVVVKDALMQPIRKIQSATH--FKDVSTEDDETR 265
Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556
K+ G D A M T + E+K+ D+ T KDF +AI R
Sbjct: 266 KLTPCSPGDDGAIE-------------MSWTDIEADELKEPDL----TIKDFLKAIKSTR 308
Query: 557 KSVTAHDLSKYDSWMNEFGSH 577
+V DL K + + +FG
Sbjct: 309 PTVNEDDLLKQEQFTRDFGQE 329
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 7/104 (6%)
Query: 203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHS 255
L++ + +I++ V+W +AG AK LQE ++LP++ PE F K L
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 256 HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
G GKT+LA+AVATEC TF N+S+++LTSKY G+ EKLVR LF
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALF 106
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 39/223 (17%)
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASR 441
AT + G ++ + AR PS IFIDEVDSL S R S SEHEASR
Sbjct: 80 ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASR 138
Query: 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL-------------------- 481
R K E L++ DGL + D+I+ +LAATN P +L L
Sbjct: 139 RLKTEFLVEFDGLPGNPDGDRIV-VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELL 197
Query: 482 -------EGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 534
+G +D +++K+ +GY+GSD+ LA+DAA+ IR ++++
Sbjct: 198 LNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEPIRE-------LNVEQV 249
Query: 535 KQEDIDL--PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
K DI +TE+DF ++ R R+SV L+ Y+ W ++G
Sbjct: 250 KCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 174 VSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAIL 233
V + N+ DG D EK L L+ I+ PNV+W+ VAGL AK L
Sbjct: 95 VDEKGNDSDGEAESDDPEK--------KKLQNQLQGAIVIERPNVKWSDVAGLEGAKEAL 146
Query: 234 QEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATEC-GTTFFNVSSSTLTS 285
+EA++LP P F + L GTGK+ LAKAVATE +TFF++SSS L S
Sbjct: 147 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206
Query: 286 KYRGESEKLVRLLFEM 301
K+ GESEKLV+ LF++
Sbjct: 207 KWLGESEKLVKNLFQL 222
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 32/151 (21%)
Query: 398 GHSGRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS 456
G S ++ KN LFQ AR PS IFIDE+DSLC R S++E EA+RR K E L+QM G+
Sbjct: 210 GESEKLVKN-LFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVG- 266
Query: 457 SLYEDKIIMILAATNHPYQLLTLC----------------LEGVVIDVNL---------- 490
++ I++L ATN P+ L + + ++L
Sbjct: 267 --VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEA 324
Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIRR 521
DF ++ + +GY+G+DI+ + RDA M +R+
Sbjct: 325 DFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 8/99 (8%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTML 263
I+ PNV+W+ VAGL AK L+EA++LP P F + L GTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 264 AKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
AKAVATE +TFF++SSS L SK+ GESEKLV+ LF++
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 100
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 64/237 (27%)
Query: 398 GHSGRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS 456
G S ++ KN LFQ AR PS IFIDE+DSLC R S++E EA+RR K E L+QM G+
Sbjct: 88 GESEKLVKN-LFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVG- 144
Query: 457 SLYEDKIIMILAATNHPYQLLTLC----------------LEGVVIDVNL---------- 490
++ I++L ATN P+ L + + ++L
Sbjct: 145 --VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEA 202
Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIR--------RKIMGQ---------------- 526
DF ++ + +GY+G+DI+ + RDA M +R +K+ G
Sbjct: 203 DFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPC 262
Query: 527 TPAQIKEIKQEDIDLP--------VTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
+P I+ +D+P V+ D +++ + +V HDL K + +FG
Sbjct: 263 SPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 43/200 (21%)
Query: 396 HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455
+ G S R + +A+ AP IF DEVD+LC R SD E AS R +LL +MDGL
Sbjct: 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR-SDRETGASVRVVNQLLTEMDGLE 142
Query: 456 SSLYEDKIIMILAATNHP----------------------------YQLLTLCLEG---- 483
+ + + I+AATN P L T+ G
Sbjct: 143 AR----QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPP 198
Query: 484 VVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPV 543
+ DVNL+ + YTG+D++ L R+A++ ++R+++ Q E +L V
Sbjct: 199 LDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSG------NEKGELKV 252
Query: 544 TEKDFREAIARCRKSVTAHD 563
+ K F EA + R S++ D
Sbjct: 253 SHKHFEEAFKKVRSSISKKD 272
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
PNV W + L + + L A++ P P+ FK L G GKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A E G F +V L + Y GESE+ VR +F+
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQ 97
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTML 263
+ PNV++ + GL + ++E + LP PE F K L GTGKT+L
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
AKAVATE TF V S L K+ GE LV+ +F++
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKL 105
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 39/155 (25%)
Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR-----GSDSEHEASRRFKAELLIQMD 452
G + K+ A+ APS IFIDE+D++ + R G D E +R +LL +MD
Sbjct: 93 GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLLAEMD 149
Query: 453 GLNSSLYEDKIIMILAATNHP---------------------------YQLLTLCLEGVV 485
G ++ + I+ ATN P ++L + +
Sbjct: 150 GFDAR----GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN 205
Query: 486 IDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
+ +++ +I+KM EG G+++ + +A M +IR
Sbjct: 206 LAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTML 263
++ P+V ++ V G + L+E + LP + PE F K L GTGKT+
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A+AVA TF V S L KY GE ++VR LFEM
Sbjct: 260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEM 297
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 56/193 (29%)
Query: 394 QSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQ 450
Q + G R+ + AR IF DE+D++ R G+ ++E R EL+ Q
Sbjct: 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQ 339
Query: 451 MDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDF------------------ 492
+DG + I ++ ATN P L L ID ++F
Sbjct: 340 LDGFDPR----GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395
Query: 493 ---------HKISKMLEGYTGSDIANLARDAAMMSI--RRKIMGQTPAQIKEIKQEDIDL 541
IS++ TG+++ ++ +A M +I RRK+
Sbjct: 396 MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKV------------------ 437
Query: 542 PVTEKDFREAIAR 554
TEKDF +A+ +
Sbjct: 438 -ATEKDFLKAVDK 449
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 36/176 (20%)
Query: 376 SMVAVVATHFTWG-KKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR--- 431
++ A + +F + G + G S RI + A+ + P IF+DEVD++ R
Sbjct: 234 AVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293
Query: 432 GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL- 490
G+ ++ E R ELL QMDG + +L + KIIM ATN P L L +D +
Sbjct: 294 GTSADREIQRTL-MELLTQMDGFD-NLGQTKIIM---ATNRPDTLDPALLRPGRLDRKVE 348
Query: 491 --------------------------DFHKISKMLEGYTGSDIANLARDAAMMSIR 520
DF KM +G+ G+DI N A +A +IR
Sbjct: 349 IPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVAT 269
+ ++ + GLTE L+E + LP PE F K L GTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
G F +S + KY GES +++R +F
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMF 267
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
P V W + GL + K LQE + P P+ F K L G GKT+LAKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A EC F ++ L + + GESE VR +F+
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFD 564
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+ + +A AP+ IFIDE+D++ R + E RR ++LL MDGL + +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P ++L + + + + ++D +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
G+ G+D+A L +AA+ +IR+K+ + +++ E ID L VT DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
+++ S
Sbjct: 456 LSQSNPS 462
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 47/201 (23%)
Query: 410 QARCYAPSTIFIDEVDSLCSMR--GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
+AR AP +F DE+DS+ R A+ R ++L +MDG+++ K + I+
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFII 620
Query: 468 AATNHP-------------YQLLTLCLEG----------------VVIDVNLDFHKISKM 498
ATN P QL+ + L V DV+L+F ++KM
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF--LAKM 678
Query: 499 LEGYTGSDIANLARDAAMMS--------IRRKIMGQTPAQIKEIKQEDIDLPVTEKD-FR 549
G++G+D+ + + A ++ IRR+ QT E++++D +P +D F
Sbjct: 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD-PVPEIRRDHFE 737
Query: 550 EAIARCRKSVTAHDLSKYDSW 570
EA+ R+SV+ +D+ KY+ +
Sbjct: 738 EAMRFARRSVSDNDIRKYEMF 758
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA--------LERHSHGTGKTMLAKAVAT 269
V ++ V G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E G FF ++ + SK GESE +R FE
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
P V W + GL + K LQE + P P+ F K L G GKT+LAKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A EC F ++ L + + GESE VR +F+
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFD 564
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+ + +A AP+ IFIDE+D++ R + E RR ++LL MDGL + +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P ++L + + + + ++D +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
G+ G+D+A L +AA+ +IR+K+ + +++ E ID L VT DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
+++ S
Sbjct: 456 LSQSNPS 462
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 47/201 (23%)
Query: 410 QARCYAPSTIFIDEVDSLCSMR--GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
+AR AP +F DE+DS+ R A+ R ++L +MDG+++ K + I+
Sbjct: 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFII 620
Query: 468 AATNHP-------------YQLLTLCLEG----------------VVIDVNLDFHKISKM 498
ATN P QL+ + L V DV+L+F ++KM
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF--LAKM 678
Query: 499 LEGYTGSDIANLARDAAMMS--------IRRKIMGQTPAQIKEIKQEDIDLPVTEKD-FR 549
G++G+D+ + + A ++ IRR+ QT E++++D +P +D F
Sbjct: 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD-PVPEIRRDHFE 737
Query: 550 EAIARCRKSVTAHDLSKYDSW 570
EA+ R+SV+ +D+ KY+ +
Sbjct: 738 EAMRFARRSVSDNDIRKYEMF 758
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA--------LERHSHGTGKTMLAKAVAT 269
V ++ + G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E G FF ++ + SK GESE +R FE
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+ + +A AP+ IFIDE+D++ R + E RR ++LL MDGL + +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P ++L + + + + ++D +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
G+ G+D+A L +AA+ +IR+K+ + +++ E ID L VT DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
+++ S
Sbjct: 456 LSQSNPS 462
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA--------LERHSHGTGKTMLAKAVAT 269
V ++ + G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E G FF ++ + SK GESE +R FE
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+ + +A AP+ IFIDE+D++ R + E RR ++LL MDGL + +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P ++L + + + + ++D +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
G+ G+D+A L +AA+ +IR+K+ + +++ E ID L VT DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
+++ S
Sbjct: 456 LSQSNPS 462
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA--------LERHSHGTGKTMLAKAVAT 269
V ++ + G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E G FF ++ + SK GESE +R FE
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+ + +A AP+ IFIDE+D++ R + E RR ++LL MDGL + +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P ++L + + + + ++D +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
G+ G+D+A L +AA+ +IR+K+ + +++ E ID L VT DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
+++ S
Sbjct: 456 LSQSNPS 462
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA--------LERHSHGTGKTMLAKAVAT 269
V ++ + G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E G FF ++ + SK GESE +R FE
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
P V W + GL + K LQE + P P+ F K L G GKT+LAKA+
Sbjct: 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A EC F ++ L + + GESE VR +F+
Sbjct: 70 ANECQANFISIKGPELLTMWFGESEANVREIFD 102
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 48/208 (23%)
Query: 404 NKNSLF-QARCYAPSTIFIDEVDSLCSMR--GSDSEHEASRRFKAELLIQMDGLNSSLYE 460
N +F +AR AP +F DE+DS+ R A+ R ++L +MDG+++
Sbjct: 96 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--- 152
Query: 461 DKIIMILAATNHP-------------YQLLTLCLEG----------------VVIDVNLD 491
K + I+ ATN P QL+ + L V DV+L+
Sbjct: 153 -KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 211
Query: 492 FHKISKMLEGYTGSDIANLARDAAMMS--------IRRKIMGQTPAQIKEIKQEDIDLPV 543
F ++KM G++G+D+ + + A ++ IRR+ QT E++++D +P
Sbjct: 212 F--LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD-PVPE 268
Query: 544 TEKD-FREAIARCRKSVTAHDLSKYDSW 570
+D F EA+ R+SV+ +D+ KY+ +
Sbjct: 269 IRRDHFEEAMRFARRSVSDNDIRKYEMF 296
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 330 YNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGK 389
Y ++ + ++ KG L P +G ++ + V G P+ F+ G
Sbjct: 32 YPERYANLGAKIPKGVLLVGPPG-----TGKTLLAKAVAGEAHVPF---------FSMGG 77
Query: 390 KGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAE 446
+ G ++ A+ APS IFIDE+D++ R G S ++ + +
Sbjct: 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137
Query: 447 LLIQMDGLNSSLYEDKIIMILAATNHP---------------------------YQLLTL 479
LL +MDG S E+ +++LAATN P ++L +
Sbjct: 138 LLAEMDGFGS---ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKV 194
Query: 480 CLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
++GV + +++ +++K+ G G+D+AN+ +AA+++ R
Sbjct: 195 HIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
PNV++ +AG EAK + E +V PE + K L GTGKT+LAKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A E FF++ S+ + G VR LFE
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFE 97
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 44/183 (24%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+ + +A AP+ IFIDE+D++ R + E RR ++LL MDGL + +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P ++L + + + + ++D +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
G+ G+D+A L +AA+ +IR+K+ + +++ E ID L VT DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IAR 554
+++
Sbjct: 456 LSQ 458
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA--------LERHSHGTGKTMLAKAVAT 269
V ++ V G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E G FF ++ + SK GESE +R FE
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
QA+ +AP +FIDE+D++ RG+ H+ + +LL++MDG +S + I+++
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK----EGIIVM 158
Query: 468 AATNHPYQLLTLCL------EGVVI-----------------------DVNLDFHKISKM 498
AATN P L L + +V+ DVNL+ I+K
Sbjct: 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEI--IAKR 216
Query: 499 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555
G+ G+D+ NL +AA+++ R G+ +T KDF EAI R
Sbjct: 217 TPGFVGADLENLVNEAALLAARE---GRD--------------KITMKDFEEAIDRV 256
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
GTGKT+LA+AVA E FF++S S + G VR LF
Sbjct: 59 GTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLF 101
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTM 262
+++ P+ ++ V GLT+ ++E + LP PE F K + GTGKT+
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 263 LAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
LA+AVA F VS + L KY GE ++VR LF M
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVM 236
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 49/184 (26%)
Query: 393 CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR-----GSDSEHEASRRFKAEL 447
Q + G R+ + AR +APS IF+DE+DS+ S R G DSE +R EL
Sbjct: 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSE---VQRTMLEL 275
Query: 448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDF--------------- 492
L Q+DG +S K I I+ ATN L L ID ++F
Sbjct: 276 LNQLDGFETS----KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331
Query: 493 ------------HKISKMLEGYTGSDIANLARDAAMMSIR-RKIMGQTPAQIKEIKQEDI 539
K+++ + G +G+D+ + +A M ++R R+I + QED
Sbjct: 332 SRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI---------HVTQEDF 382
Query: 540 DLPV 543
+L V
Sbjct: 383 ELAV 386
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
QA+ +AP +FIDE+D++ RG+ H+ + +LL++MDG +S + I+++
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK----EGIIVM 158
Query: 468 AATNHPYQLLTLCL------EGVVI-----------------------DVNLDFHKISKM 498
AATN P L L + +V+ DVNL+ I+K
Sbjct: 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEI--IAKR 216
Query: 499 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555
G+ G+D+ NL +AA+++ R G+ +T KDF EAI R
Sbjct: 217 TPGFVGADLENLVNEAALLAARE---GRD--------------KITMKDFEEAIDRV 256
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
GTG T+LA+AVA E FF++S S + G VR LF
Sbjct: 59 GTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLF 101
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
P+V + V GL K ++EA+ LP + + +++ L GTGKTML KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A F V+ S KY GE ++VR +F +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRL 260
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 393 CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR-----GSDSEHEASRRFKAEL 447
+ G R+ ++ AR APS IFIDEVDS+ + R GSD E + R EL
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ---RILIEL 299
Query: 448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDF 492
L QMDG + S K+IM ATN L L +D ++F
Sbjct: 300 LTQMDGFDQS-TNVKVIM---ATNRADTLDPALLRPGRLDRKIEF 340
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTML 263
+ +P ++ + GL ++E++ LP PE ++E + + GTGKT+L
Sbjct: 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
AKAVA + TF + S L KY G+ +L R +F++
Sbjct: 233 AKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKV 270
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 394 QSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQ 450
Q + G R+ + A APS +FIDE+D++ + R S E E R ELL Q
Sbjct: 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM-LELLNQ 312
Query: 451 MDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID-----VNLDFHKISKML------ 499
+DG + + K+IM ATN L + ID N D K+L
Sbjct: 313 LDGFDDR-GDVKVIM---ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368
Query: 500 ----------------EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ 536
+ +G+DI + +A ++++R + M T K+ K+
Sbjct: 369 MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 47/214 (21%)
Query: 336 QMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQS 395
++ ++ KG L P +G ++ + + G K P+ FT +
Sbjct: 39 KLGGKIPKGVLMVGPP-----GTGKTLLAKAIAGEAKVPF---------FTISGSDFVEM 84
Query: 396 HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDG 453
G ++ QA+ AP IFIDE+D++ RG+ H+ + ++L++MDG
Sbjct: 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144
Query: 454 LNSSLYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVI 486
++ I+++AATN P Q+L + + V +
Sbjct: 145 FEG----NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL 200
Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
++D I++ G++G+D+ANL +AA+ + R
Sbjct: 201 APDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
GTGKT+LAKA+A E FF +S S + G VR +FE
Sbjct: 55 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 98
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
P ++ V GL + L EA+VLP + FK+ AL GTGKT+LA+A
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARAC 235
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A + TF +++ L Y GE KLVR F +
Sbjct: 236 AAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFAL 269
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 59/229 (25%)
Query: 369 GLGKGPWSMVAVVATHFTWGKKGT---CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVD 425
G GK + T+ T+ K Q + G ++ +++ A+ AP+ IFIDE+D
Sbjct: 225 GTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
Query: 426 SLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKIIMILAATNH---------- 472
++ + R DSE R R ELL Q+DG +S D + +LAATN
Sbjct: 285 AIGTKR-FDSEKSGDREVQRTMLELLNQLDGFSS----DDRVKVLAATNRVDVLDPALLR 339
Query: 473 ----------PY-------QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAA 515
P Q+L + + D ++++ ++++ + + G+ + + +A
Sbjct: 340 SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399
Query: 516 MMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI----ARCRKSVT 560
M+++R GQ+ V +DF E I AR KSV+
Sbjct: 400 MIALRN---GQS--------------SVKHEDFVEGISEVQARKSKSVS 431
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 58/225 (25%)
Query: 332 KQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKG 391
++ LQ+ +V KGAL P G ++ + V + P+ +A+ F G
Sbjct: 29 ERFLQLGAKVPKGALLLGPPGC-----GKTLLAKAVATEAQVPF--LAMAGAEFVEVIGG 81
Query: 392 TCQSHEGHSGRINKNSLF-QARCYAPSTIFIDEVDSLCSMRG------SDSEHEASRRFK 444
G SLF +AR AP ++IDE+D++ R S++E E +
Sbjct: 82 L--------GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLN-- 131
Query: 445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--VNLDF---------- 492
+LL++MDG+ ++ D +I +LA+TN L + +D V +D
Sbjct: 132 -QLLVEMDGMGTT---DHVI-VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIF 186
Query: 493 -----------------HKISKMLEGYTGSDIANLARDAAMMSIR 520
+++++ G++G+DIAN+ +AA+ + R
Sbjct: 187 EQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVA 268
V + VAG+ EAK ++E V PE F K AL G GKT+LAKAVA
Sbjct: 2 GVSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 269 TECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
TE F ++ + G VR LF+
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFK 92
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 34/129 (26%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSSLYEDKII 464
LF+ A+ +AP +FIDE+D++ RGS R + +LL++MDG +D I
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE----KDTAI 179
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
+++AATN P Q+L + G + ++D ++K
Sbjct: 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Query: 498 MLEGYTGSD 506
G+ G+D
Sbjct: 240 RTPGFVGAD 248
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G GKT LA+AVA E F S S + G VR LFE
Sbjct: 83 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 126
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 34/136 (25%)
Query: 401 GRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSS 457
G LF+ A+ +AP +FIDE+D++ RGS R + +LL++MDG
Sbjct: 117 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-- 174
Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNL 490
+D I+++AATN P Q+L + G + ++
Sbjct: 175 --KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 232
Query: 491 DFHKISKMLEGYTGSD 506
D ++K G+ G+D
Sbjct: 233 DLALLAKRTPGFVGAD 248
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G GKT LA+AVA E F S S + G VR LFE
Sbjct: 83 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 126
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 34/136 (25%)
Query: 401 GRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSS 457
G LF+ A+ +AP +FIDE+D++ RGS R + +LL++MDG
Sbjct: 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-- 165
Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNL 490
+D I+++AATN P Q+L + G + ++
Sbjct: 166 --KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 223
Query: 491 DFHKISKMLEGYTGSD 506
D ++K G+ G+D
Sbjct: 224 DLALLAKRTPGFVGAD 239
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G GKT LA+AVA E F S S + G VR LFE
Sbjct: 74 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 117
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 34/130 (26%)
Query: 407 SLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSSLYEDKI 463
LF+ A+ +AP +FIDE+D++ RGS R + +LL++MDG +D
Sbjct: 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE----KDTA 154
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
I+++AATN P Q+L + G + ++D ++
Sbjct: 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 214
Query: 497 KMLEGYTGSD 506
K G+ G+D
Sbjct: 215 KRTPGFVGAD 224
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G GKT LA+AVA E F S S + G VR LFE
Sbjct: 59 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 102
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQED 538
D+ + M EGY+GSDIA + +DA M IR+ Q+ K++ ED
Sbjct: 27 DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI---QSATHFKDVSTED 71
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 482 EGVVIDV-NLDFHKISKMLEGYTGSDIANL-ARDAAMMSIRRKIMGQTPAQIKEIKQEDI 539
EG + V L +I K LEG G +IANL A + ++S RR+ + + ++KE + +
Sbjct: 126 EGAMAAVLKLPLEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLKERRARVV 185
Query: 540 DLPVTEKDFREAIARCRKSVTAHDLSK 566
LPV+ +A RK + A DL++
Sbjct: 186 FLPVSAPFHSSLMAPARKRL-AEDLAQ 211
>pdb|1TO6|A Chain A, Glycerate Kinase From Neisseria Meningitidis (Serogroup A)
pdb|1TO6|B Chain B, Glycerate Kinase From Neisseria Meningitidis (Serogroup A)
Length = 371
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 271 CGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAY 330
CG + N++S + ++Y+ + +R+L ++VS L G H T Y G G +T F
Sbjct: 162 CGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCG-HQGAT-YTFGKQKGLDSTMFEV 219
Query: 331 NKQILQ 336
Q +Q
Sbjct: 220 VDQAIQ 225
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 301 MVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKG-ALTTAPTRAENQESG 359
M V H + +++L+G+ +G + +N Q+L+ N + L +A + N
Sbjct: 214 MPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVS 273
Query: 360 PSIFSVMVDGLGKGPWSMVAVVATHFTWG 388
P +G W++ +++ HF G
Sbjct: 274 P-----------EGRWTIASLIPRHFQAG 291
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
Query: 200 EPSLIETLEKDILQNNP--------NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEAL 251
E LI TL +D +N P +++WNK+ + + +A+LQ + P + P +EAL
Sbjct: 576 EMDLIWTLRQDCRENFPQSLPKLLLSIKWNKLEDVAQLQALLQ---IWPKLPP---REAL 629
Query: 252 E 252
E
Sbjct: 630 E 630
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 419 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLL 477
+F E++ +C + DS+ + R AE ++Q L S L + I + +P +++
Sbjct: 83 LFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMI 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,002,061
Number of Sequences: 62578
Number of extensions: 617464
Number of successful extensions: 1663
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 98
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)