Query psy16204
Match_columns 577
No_of_seqs 310 out of 2574
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 23:28:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738|consensus 100.0 1E-59 2.2E-64 490.8 28.5 279 189-576 180-490 (491)
2 KOG0733|consensus 100.0 1.3E-49 2.8E-54 431.3 23.0 354 215-575 184-789 (802)
3 KOG0730|consensus 100.0 2.8E-47 6.1E-52 416.7 22.6 337 216-573 180-692 (693)
4 KOG0736|consensus 100.0 5E-45 1.1E-49 402.8 21.5 252 213-575 664-952 (953)
5 KOG0739|consensus 100.0 8.8E-45 1.9E-49 369.8 17.7 258 206-576 118-437 (439)
6 COG1222 RPT1 ATP-dependent 26S 100.0 4.3E-43 9.4E-48 364.0 18.9 218 210-557 140-394 (406)
7 TIGR01243 CDC48 AAA family ATP 100.0 7.4E-40 1.6E-44 369.3 27.6 358 215-576 172-731 (733)
8 KOG0737|consensus 100.0 8.7E-38 1.9E-42 325.3 20.4 249 216-576 87-382 (386)
9 KOG0740|consensus 100.0 3.8E-37 8.3E-42 327.7 18.3 264 197-576 129-425 (428)
10 COG0464 SpoVK ATPases of the A 100.0 4.6E-35 1E-39 315.6 20.6 224 211-570 232-492 (494)
11 KOG0734|consensus 100.0 8.4E-35 1.8E-39 312.8 17.8 210 215-555 298-541 (752)
12 KOG0728|consensus 100.0 5.5E-34 1.2E-38 286.1 17.3 231 210-570 136-403 (404)
13 KOG0735|consensus 100.0 9.2E-34 2E-38 311.8 19.6 236 217-574 663-935 (952)
14 KOG0731|consensus 100.0 1.5E-33 3.3E-38 315.5 17.8 211 215-556 305-554 (774)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 9.5E-33 2.1E-37 300.1 22.9 225 216-573 223-483 (489)
16 KOG0727|consensus 100.0 1.8E-33 3.9E-38 282.6 15.4 221 210-560 144-402 (408)
17 PTZ00454 26S protease regulato 100.0 1.1E-32 2.5E-37 292.8 19.4 219 210-558 134-389 (398)
18 KOG0729|consensus 100.0 2.4E-32 5.3E-37 276.0 16.2 219 209-557 165-420 (435)
19 COG1223 Predicted ATPase (AAA+ 100.0 1.9E-32 4E-37 276.0 15.3 216 213-559 113-359 (368)
20 KOG0726|consensus 100.0 1.7E-32 3.6E-37 279.6 14.9 214 211-555 175-426 (440)
21 COG0465 HflB ATP-dependent Zn 100.0 4.1E-32 8.8E-37 299.0 16.4 213 212-555 141-390 (596)
22 PRK03992 proteasome-activating 100.0 1.1E-31 2.3E-36 283.8 18.5 223 210-562 120-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 1.3E-30 2.9E-35 280.0 19.3 217 210-556 172-425 (438)
24 KOG0652|consensus 100.0 5.2E-31 1.1E-35 265.9 13.5 220 207-556 157-413 (424)
25 KOG0741|consensus 100.0 2.1E-30 4.5E-35 278.9 16.3 241 222-569 222-506 (744)
26 TIGR01241 FtsH_fam ATP-depende 100.0 4.6E-30 1E-34 278.2 18.6 215 211-556 45-296 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 5.8E-29 1.3E-33 259.4 18.0 216 210-555 111-363 (364)
28 TIGR03689 pup_AAA proteasome A 100.0 2E-28 4.4E-33 267.3 21.5 171 209-488 170-358 (512)
29 CHL00176 ftsH cell division pr 100.0 4.3E-28 9.2E-33 270.9 21.3 211 214-555 176-423 (638)
30 KOG0651|consensus 100.0 7.3E-28 1.6E-32 247.2 15.1 217 209-555 120-373 (388)
31 COG1220 HslU ATP-dependent pro 100.0 5.7E-28 1.2E-32 250.1 13.6 268 221-490 15-333 (444)
32 PRK10733 hflB ATP-dependent me 99.9 8E-27 1.7E-31 261.0 19.8 213 216-558 147-395 (644)
33 CHL00206 ycf2 Ycf2; Provisiona 99.9 3.2E-27 6.9E-32 280.4 16.3 128 404-556 1721-1878(2281)
34 KOG0733|consensus 99.9 1.1E-26 2.4E-31 253.5 16.8 253 320-574 185-523 (802)
35 KOG0732|consensus 99.9 8.4E-27 1.8E-31 267.4 13.9 237 210-561 254-531 (1080)
36 PLN00020 ribulose bisphosphate 99.9 5E-25 1.1E-29 232.1 16.6 169 217-490 111-295 (413)
37 TIGR00390 hslU ATP-dependent p 99.9 1.9E-22 4.2E-27 215.7 16.7 268 221-490 12-330 (441)
38 PRK05201 hslU ATP-dependent pr 99.9 3E-22 6.6E-27 214.3 16.2 267 221-490 15-332 (443)
39 COG0542 clpA ATP-binding subun 99.9 7E-22 1.5E-26 223.3 17.0 238 184-554 454-703 (786)
40 KOG2004|consensus 99.9 7E-22 1.5E-26 219.0 11.2 259 155-527 350-642 (906)
41 COG0466 Lon ATP-dependent Lon 99.9 1.3E-21 2.8E-26 217.5 11.7 258 183-554 290-583 (782)
42 PF00004 AAA: ATPase family as 99.8 1.2E-19 2.5E-24 158.7 13.1 124 250-486 1-126 (132)
43 TIGR02639 ClpA ATP-dependent C 99.8 1.3E-17 2.8E-22 189.5 19.3 183 182-475 415-606 (731)
44 PRK11034 clpA ATP-dependent Cl 99.8 9.9E-18 2.2E-22 191.1 17.9 181 182-473 419-608 (758)
45 KOG0730|consensus 99.8 4.7E-18 1E-22 187.9 14.7 219 325-572 184-444 (693)
46 PF05496 RuvB_N: Holliday junc 99.7 1.6E-17 3.5E-22 165.7 11.6 167 210-514 13-191 (233)
47 KOG0744|consensus 99.7 1.7E-17 3.7E-22 172.1 11.0 164 219-490 140-324 (423)
48 TIGR03345 VI_ClpV1 type VI sec 99.7 1E-16 2.3E-21 185.0 17.7 183 184-477 529-723 (852)
49 TIGR00763 lon ATP-dependent pr 99.7 8.9E-17 1.9E-21 183.8 15.2 159 219-486 318-486 (775)
50 TIGR02881 spore_V_K stage V sp 99.7 2.8E-16 6.1E-21 157.3 15.9 82 220-301 5-103 (261)
51 KOG0736|consensus 99.7 7.8E-16 1.7E-20 172.4 19.2 236 224-573 404-683 (953)
52 CHL00181 cbbX CbbX; Provisiona 99.7 1.6E-15 3.4E-20 155.5 19.1 82 220-301 22-120 (287)
53 CHL00095 clpC Clp protease ATP 99.7 9E-16 1.9E-20 176.6 19.3 186 182-478 470-667 (821)
54 TIGR01243 CDC48 AAA family ATP 99.7 3.1E-16 6.6E-21 178.1 14.2 235 320-559 173-439 (733)
55 PRK05342 clpX ATP-dependent pr 99.7 1.8E-15 3.9E-20 162.4 16.5 80 221-300 71-163 (412)
56 TIGR02880 cbbX_cfxQ probable R 99.6 1.1E-14 2.5E-19 148.6 19.5 81 221-301 22-119 (284)
57 TIGR02639 ClpA ATP-dependent C 99.6 1.2E-14 2.6E-19 165.4 19.9 236 209-574 170-452 (731)
58 KOG0742|consensus 99.6 1E-14 2.2E-19 155.1 17.6 180 217-512 351-586 (630)
59 COG2255 RuvB Holliday junction 99.6 9.2E-15 2E-19 150.0 16.3 165 213-515 18-194 (332)
60 TIGR03346 chaperone_ClpB ATP-d 99.6 1.1E-14 2.3E-19 168.4 18.7 182 183-475 527-720 (852)
61 KOG0735|consensus 99.6 1.3E-14 2.9E-19 161.7 17.6 210 221-558 408-651 (952)
62 PRK00080 ruvB Holliday junctio 99.6 3.8E-14 8.2E-19 146.4 20.0 71 211-281 15-85 (328)
63 TIGR00635 ruvB Holliday juncti 99.6 2.3E-14 5E-19 145.0 16.3 63 219-281 2-64 (305)
64 PRK10787 DNA-binding ATP-depen 99.6 7.4E-15 1.6E-19 168.5 13.8 180 217-516 318-507 (784)
65 TIGR00382 clpX endopeptidase C 99.6 1.6E-14 3.4E-19 155.3 15.4 149 219-472 75-247 (413)
66 KOG0743|consensus 99.6 1.4E-14 2.9E-19 155.7 13.4 167 218-503 198-386 (457)
67 PRK10865 protein disaggregatio 99.6 2.8E-14 6E-19 165.2 16.8 183 183-476 530-724 (857)
68 COG0464 SpoVK ATPases of the A 99.6 9.2E-14 2E-18 150.7 17.2 185 247-558 18-229 (494)
69 COG1219 ClpX ATP-dependent pro 99.5 5.7E-14 1.2E-18 145.9 11.9 83 219-301 59-153 (408)
70 COG2256 MGS1 ATPase related to 99.5 2E-14 4.4E-19 152.7 7.9 134 210-356 13-149 (436)
71 KOG2028|consensus 99.5 6E-14 1.3E-18 147.8 11.2 131 214-356 131-267 (554)
72 PRK14956 DNA polymerase III su 99.5 7.9E-13 1.7E-17 144.4 20.2 61 210-274 7-67 (484)
73 PRK14958 DNA polymerase III su 99.5 1.2E-12 2.6E-17 144.1 19.6 60 211-274 6-65 (509)
74 PRK14962 DNA polymerase III su 99.5 1.2E-12 2.7E-17 142.8 19.3 59 211-273 4-62 (472)
75 PRK12323 DNA polymerase III su 99.5 1.4E-12 2.9E-17 146.6 19.8 59 211-273 6-64 (700)
76 TIGR02902 spore_lonB ATP-depen 99.5 4.5E-13 9.7E-18 147.9 15.7 70 208-282 52-131 (531)
77 PRK14960 DNA polymerase III su 99.5 2.2E-12 4.7E-17 145.2 21.1 60 211-274 5-64 (702)
78 KOG1051|consensus 99.5 1.5E-13 3.3E-18 158.0 12.0 177 185-475 526-713 (898)
79 PRK07003 DNA polymerase III su 99.5 2E-12 4.3E-17 147.0 20.0 60 211-274 6-65 (830)
80 PRK14949 DNA polymerase III su 99.5 2.5E-12 5.5E-17 148.2 20.5 61 210-274 5-65 (944)
81 PRK14961 DNA polymerase III su 99.5 2.2E-12 4.7E-17 135.8 18.0 61 210-274 5-65 (363)
82 PRK13342 recombination factor 99.4 2.8E-12 6.1E-17 137.0 18.2 67 211-282 2-71 (413)
83 PRK14964 DNA polymerase III su 99.4 3.3E-12 7.3E-17 140.0 18.9 59 212-274 4-62 (491)
84 PF07724 AAA_2: AAA domain (Cd 99.4 3.4E-13 7.3E-18 128.9 9.3 60 418-478 71-135 (171)
85 PRK06645 DNA polymerase III su 99.4 3.9E-12 8.4E-17 140.1 18.9 61 210-274 10-70 (507)
86 PRK07764 DNA polymerase III su 99.4 1.7E-12 3.6E-17 149.8 16.4 60 211-274 5-64 (824)
87 PRK04195 replication factor C 99.4 2.3E-12 5E-17 140.3 16.2 74 210-284 3-76 (482)
88 PRK08691 DNA polymerase III su 99.4 4.7E-12 1E-16 143.2 18.2 60 211-274 6-65 (709)
89 PRK14965 DNA polymerase III su 99.4 3.6E-12 7.9E-17 142.1 17.2 59 212-274 7-65 (576)
90 PRK14959 DNA polymerase III su 99.4 6.9E-12 1.5E-16 140.7 19.3 61 210-274 5-65 (624)
91 CHL00095 clpC Clp protease ATP 99.4 5.2E-12 1.1E-16 145.8 18.8 89 208-301 166-266 (821)
92 PRK14951 DNA polymerase III su 99.4 9.8E-12 2.1E-16 139.7 19.8 59 211-273 6-64 (618)
93 PLN03025 replication factor C 99.4 8.7E-12 1.9E-16 128.6 17.8 68 210-282 2-74 (319)
94 PRK11034 clpA ATP-dependent Cl 99.4 5.9E-12 1.3E-16 144.3 18.1 86 211-301 176-273 (758)
95 TIGR03345 VI_ClpV1 type VI sec 99.4 1.3E-11 2.8E-16 143.2 19.6 89 208-301 174-274 (852)
96 PRK07994 DNA polymerase III su 99.4 1.4E-11 3E-16 139.0 19.0 60 211-274 6-65 (647)
97 PRK14957 DNA polymerase III su 99.4 1.5E-11 3.2E-16 136.6 18.8 60 210-273 5-64 (546)
98 KOG0989|consensus 99.4 1.8E-11 3.8E-16 127.0 18.0 59 210-273 25-83 (346)
99 TIGR02397 dnaX_nterm DNA polym 99.4 1.4E-11 3.1E-16 126.6 17.4 61 210-274 3-63 (355)
100 PRK14952 DNA polymerase III su 99.4 1.2E-11 2.7E-16 138.1 17.9 58 213-274 5-62 (584)
101 PRK05896 DNA polymerase III su 99.4 1.6E-11 3.5E-16 137.3 18.5 60 210-273 5-64 (605)
102 PRK10865 protein disaggregatio 99.4 4.9E-12 1.1E-16 146.7 14.4 88 209-301 166-265 (857)
103 PRK14963 DNA polymerase III su 99.4 1.9E-11 4.1E-16 134.6 18.0 58 212-273 5-62 (504)
104 PRK05563 DNA polymerase III su 99.4 1.6E-11 3.4E-16 136.6 17.6 59 212-274 7-65 (559)
105 PRK07940 DNA polymerase III su 99.4 1E-11 2.2E-16 132.9 15.4 56 219-274 3-63 (394)
106 PRK07133 DNA polymerase III su 99.4 1.8E-11 3.9E-16 139.2 17.8 61 210-274 7-67 (725)
107 PRK12402 replication factor C 99.3 2.5E-11 5.5E-16 123.5 17.0 70 210-284 4-78 (337)
108 PHA02544 44 clamp loader, smal 99.3 6.3E-12 1.4E-16 127.9 12.5 71 208-282 8-78 (316)
109 PRK06305 DNA polymerase III su 99.3 5.4E-11 1.2E-15 129.2 20.0 61 210-274 6-66 (451)
110 PRK14969 DNA polymerase III su 99.3 7.9E-11 1.7E-15 130.2 21.6 60 211-274 6-65 (527)
111 PRK14970 DNA polymerase III su 99.3 2.5E-11 5.3E-16 126.9 16.3 61 210-274 6-66 (367)
112 PRK00411 cdc6 cell division co 99.3 9.7E-11 2.1E-15 122.6 20.4 65 219-284 28-97 (394)
113 PRK14955 DNA polymerase III su 99.3 5.9E-11 1.3E-15 126.5 17.6 60 211-274 6-65 (397)
114 TIGR02928 orc1/cdc6 family rep 99.3 1.2E-10 2.7E-15 120.4 19.0 64 220-284 14-86 (365)
115 COG3829 RocR Transcriptional r 99.3 2.7E-11 5.9E-16 133.0 14.3 143 215-473 239-391 (560)
116 COG3604 FhlA Transcriptional r 99.3 5.4E-11 1.2E-15 129.6 15.9 141 217-473 219-368 (550)
117 PRK14948 DNA polymerase III su 99.3 6.3E-11 1.4E-15 133.3 17.1 61 210-274 5-65 (620)
118 TIGR03346 chaperone_ClpB ATP-d 99.3 2.5E-11 5.4E-16 140.8 14.2 87 210-301 162-260 (852)
119 COG2812 DnaX DNA polymerase II 99.3 4.2E-12 9.2E-17 139.7 7.4 181 211-502 6-190 (515)
120 PRK06647 DNA polymerase III su 99.3 1E-10 2.2E-15 130.4 18.3 59 212-274 7-65 (563)
121 PRK14954 DNA polymerase III su 99.3 1.6E-10 3.5E-15 130.0 19.4 60 211-274 6-65 (620)
122 PRK09111 DNA polymerase III su 99.3 1.2E-10 2.7E-15 130.5 17.8 62 210-275 13-74 (598)
123 cd00009 AAA The AAA+ (ATPases 99.3 7.6E-11 1.6E-15 101.8 12.6 57 224-285 1-60 (151)
124 PRK14950 DNA polymerase III su 99.3 1.4E-10 3E-15 129.6 17.9 60 211-274 6-65 (585)
125 PRK14953 DNA polymerase III su 99.3 1.7E-10 3.6E-15 126.6 18.1 60 210-273 5-64 (486)
126 PRK08451 DNA polymerase III su 99.3 3.4E-10 7.4E-15 125.5 20.4 59 211-273 4-62 (535)
127 KOG0745|consensus 99.2 2.2E-11 4.8E-16 130.8 9.8 54 248-301 227-282 (564)
128 PRK13341 recombination factor 99.2 2.5E-10 5.4E-15 130.6 17.5 67 210-281 17-86 (725)
129 PRK00440 rfc replication facto 99.2 1E-09 2.2E-14 110.9 19.5 59 209-272 5-63 (319)
130 TIGR02640 gas_vesic_GvpN gas v 99.2 9.5E-10 2.1E-14 111.0 19.1 35 248-282 22-56 (262)
131 COG2204 AtoC Response regulato 99.2 2.7E-10 5.9E-15 124.2 16.1 141 218-474 138-287 (464)
132 PF00158 Sigma54_activat: Sigm 99.2 1.2E-10 2.6E-15 111.1 11.0 58 223-283 1-61 (168)
133 PF07728 AAA_5: AAA domain (dy 99.2 8.3E-11 1.8E-15 106.0 9.1 37 249-285 1-37 (139)
134 PTZ00112 origin recognition co 99.2 3.7E-09 8E-14 121.9 24.2 64 220-284 754-828 (1164)
135 COG1221 PspF Transcriptional r 99.2 3.5E-10 7.6E-15 121.5 14.4 182 218-521 75-270 (403)
136 TIGR00362 DnaA chromosomal rep 99.2 8.9E-10 1.9E-14 117.2 17.0 65 217-284 106-178 (405)
137 PRK14971 DNA polymerase III su 99.2 1E-09 2.2E-14 123.6 18.0 60 211-274 7-66 (614)
138 PRK11331 5-methylcytosine-spec 99.1 7.1E-10 1.5E-14 120.7 15.7 47 220-273 174-220 (459)
139 PRK00149 dnaA chromosomal repl 99.1 7.2E-10 1.6E-14 119.7 15.6 65 217-284 118-190 (450)
140 COG0714 MoxR-like ATPases [Gen 99.1 2E-10 4.2E-15 119.1 8.7 57 221-284 24-80 (329)
141 TIGR02903 spore_lon_C ATP-depe 99.1 2.2E-09 4.7E-14 120.9 16.2 67 212-283 145-221 (615)
142 TIGR01817 nifA Nif-specific re 99.1 2.2E-09 4.7E-14 118.3 15.5 65 217-284 192-259 (534)
143 TIGR02974 phageshock_pspF psp 99.0 4.6E-09 1E-13 109.9 16.2 59 223-284 1-62 (329)
144 COG1474 CDC6 Cdc6-related prot 99.0 6.4E-09 1.4E-13 110.7 17.4 75 221-301 17-96 (366)
145 COG1224 TIP49 DNA helicase TIP 99.0 5.9E-09 1.3E-13 110.4 16.1 80 218-297 36-117 (450)
146 PRK14088 dnaA chromosomal repl 99.0 7.3E-09 1.6E-13 112.4 16.3 64 216-283 100-171 (440)
147 TIGR00764 lon_rel lon-related 99.0 1.5E-09 3.4E-14 122.0 11.2 84 214-304 11-104 (608)
148 KOG1969|consensus 99.0 4.2E-09 9E-14 118.9 13.8 86 209-301 259-374 (877)
149 PRK05564 DNA polymerase III su 99.0 8.8E-09 1.9E-13 106.1 15.1 51 219-273 2-52 (313)
150 PRK15424 propionate catabolism 99.0 1.3E-08 2.8E-13 113.3 17.3 63 219-284 217-290 (538)
151 TIGR01650 PD_CobS cobaltochela 99.0 2.3E-09 5.1E-14 112.6 10.4 38 248-285 65-102 (327)
152 TIGR03420 DnaA_homol_Hda DnaA 99.0 9.2E-09 2E-13 99.3 13.6 62 218-284 12-78 (226)
153 COG0470 HolB ATPase involved i 99.0 5.2E-09 1.1E-13 105.5 12.1 49 222-273 2-50 (325)
154 PRK12422 chromosomal replicati 99.0 1.3E-08 2.9E-13 110.7 16.1 68 216-283 106-180 (445)
155 PRK07471 DNA polymerase III su 98.9 5.1E-08 1.1E-12 103.8 19.6 54 216-273 14-67 (365)
156 PF07726 AAA_3: ATPase family 98.9 5.3E-10 1.1E-14 103.7 3.7 33 249-281 1-33 (131)
157 TIGR02329 propionate_PrpR prop 98.9 1.8E-08 3.9E-13 111.9 16.2 64 218-284 209-275 (526)
158 PRK11608 pspF phage shock prot 98.9 1.4E-08 2.9E-13 106.0 14.2 62 219-283 4-68 (326)
159 PRK05022 anaerobic nitric oxid 98.9 3.6E-08 7.8E-13 108.5 18.1 63 219-284 185-250 (509)
160 smart00382 AAA ATPases associa 98.9 8.3E-09 1.8E-13 87.7 10.0 38 248-285 3-43 (148)
161 PRK08903 DnaA regulatory inact 98.9 4.2E-08 9.1E-13 95.9 15.8 64 216-283 13-81 (227)
162 TIGR00678 holB DNA polymerase 98.9 2.1E-08 4.6E-13 95.4 12.6 53 415-485 96-148 (188)
163 PRK13407 bchI magnesium chelat 98.9 8.1E-09 1.8E-13 108.8 10.6 52 216-272 3-54 (334)
164 PF05673 DUF815: Protein of un 98.9 1.6E-08 3.4E-13 102.7 11.6 69 214-283 20-91 (249)
165 PRK10820 DNA-binding transcrip 98.9 4.4E-08 9.6E-13 108.3 16.0 66 216-284 199-267 (520)
166 PF06068 TIP49: TIP49 C-termin 98.9 2.4E-08 5.1E-13 106.6 13.1 81 220-301 23-105 (398)
167 PRK14086 dnaA chromosomal repl 98.9 3.4E-08 7.4E-13 111.1 15.0 67 216-285 283-357 (617)
168 PRK06893 DNA replication initi 98.9 6.1E-08 1.3E-12 96.1 15.1 53 215-271 10-63 (229)
169 PF01078 Mg_chelatase: Magnesi 98.8 5.6E-09 1.2E-13 103.5 7.7 46 219-271 1-46 (206)
170 PRK09112 DNA polymerase III su 98.8 2E-07 4.4E-12 98.8 19.7 54 216-273 18-71 (351)
171 PRK15429 formate hydrogenlyase 98.8 9.4E-08 2E-12 108.6 17.3 63 218-283 373-438 (686)
172 CHL00081 chlI Mg-protoporyphyr 98.8 2E-08 4.3E-13 106.5 10.9 51 217-272 13-63 (350)
173 PRK13531 regulatory ATPase Rav 98.8 3.6E-08 7.9E-13 108.4 13.3 55 220-281 19-75 (498)
174 smart00763 AAA_PrkA PrkA AAA d 98.8 2.7E-08 5.8E-13 105.9 11.4 83 219-301 48-143 (361)
175 TIGR02442 Cob-chelat-sub cobal 98.8 1.9E-08 4E-13 113.7 10.9 47 220-271 3-49 (633)
176 PRK11388 DNA-binding transcrip 98.8 5.6E-08 1.2E-12 109.3 14.6 65 217-284 321-388 (638)
177 COG0542 clpA ATP-binding subun 98.8 1.3E-07 2.8E-12 108.7 17.4 88 209-301 158-257 (786)
178 PRK13765 ATP-dependent proteas 98.8 2.9E-07 6.3E-12 104.4 19.6 54 213-273 23-76 (637)
179 PHA02244 ATPase-like protein 98.8 2.9E-07 6.2E-12 98.6 18.0 33 248-280 120-152 (383)
180 PRK10923 glnG nitrogen regulat 98.7 1.5E-07 3.3E-12 101.1 14.7 62 219-283 136-200 (469)
181 PF13177 DNA_pol3_delta2: DNA 98.7 1.1E-07 2.4E-12 89.9 11.3 45 225-273 1-45 (162)
182 COG0606 Predicted ATPase with 98.7 3.9E-07 8.4E-12 99.7 16.2 47 217-270 175-221 (490)
183 PRK15115 response regulator Gl 98.7 3.6E-07 7.8E-12 97.5 15.6 59 222-283 135-196 (444)
184 PRK08084 DNA replication initi 98.7 1.8E-06 4E-11 86.0 19.7 61 216-281 17-82 (235)
185 PRK08058 DNA polymerase III su 98.7 8.9E-08 1.9E-12 100.1 10.7 51 219-273 3-54 (329)
186 KOG1942|consensus 98.7 3.8E-07 8.3E-12 95.1 15.0 84 219-303 36-121 (456)
187 TIGR00368 Mg chelatase-related 98.7 1.3E-07 2.9E-12 104.4 12.4 95 415-521 295-422 (499)
188 PRK07399 DNA polymerase III su 98.7 9.5E-08 2.1E-12 99.7 10.7 52 219-274 2-53 (314)
189 TIGR02030 BchI-ChlI magnesium 98.7 9E-08 1.9E-12 101.1 10.5 47 220-271 3-49 (337)
190 PRK05642 DNA replication initi 98.7 8.1E-07 1.8E-11 88.6 16.5 37 248-284 46-85 (234)
191 TIGR02915 PEP_resp_reg putativ 98.6 5.4E-07 1.2E-11 96.2 15.4 62 219-283 137-201 (445)
192 TIGR03015 pepcterm_ATPase puta 98.6 2E-06 4.4E-11 85.2 18.4 24 249-272 45-68 (269)
193 PRK11361 acetoacetate metaboli 98.6 5.2E-07 1.1E-11 96.3 14.9 63 219-284 141-206 (457)
194 PRK14087 dnaA chromosomal repl 98.6 1.1E-06 2.3E-11 96.1 16.9 64 218-284 112-183 (450)
195 PRK04132 replication factor C 98.6 1.2E-06 2.7E-11 101.9 18.2 51 416-484 631-681 (846)
196 PF05621 TniB: Bacterial TniB 98.6 3.5E-06 7.6E-11 88.0 19.6 58 222-281 35-104 (302)
197 KOG0991|consensus 98.6 7.7E-08 1.7E-12 97.7 7.0 70 209-283 15-89 (333)
198 PRK05707 DNA polymerase III su 98.6 5E-07 1.1E-11 94.9 13.3 53 414-484 105-157 (328)
199 smart00350 MCM minichromosome 98.6 9.4E-07 2E-11 97.6 15.0 54 220-273 202-262 (509)
200 PRK08727 hypothetical protein; 98.5 4E-06 8.7E-11 83.5 17.6 60 217-281 15-78 (233)
201 PRK10365 transcriptional regul 98.5 1.5E-06 3.2E-11 92.3 15.1 60 222-284 140-202 (441)
202 TIGR01818 ntrC nitrogen regula 98.5 2.3E-06 5E-11 91.7 15.0 61 220-283 133-196 (463)
203 TIGR00602 rad24 checkpoint pro 98.5 6E-07 1.3E-11 101.9 10.9 70 208-277 71-140 (637)
204 COG2607 Predicted ATPase (AAA+ 98.5 1.7E-06 3.6E-11 88.3 12.8 69 214-283 53-124 (287)
205 KOG0741|consensus 98.5 1.6E-06 3.5E-11 95.8 13.7 148 248-513 539-699 (744)
206 PRK12377 putative replication 98.5 1.2E-06 2.7E-11 88.9 11.9 57 225-284 82-141 (248)
207 PF00308 Bac_DnaA: Bacterial d 98.4 1.8E-06 3.9E-11 85.5 12.1 66 216-284 3-76 (219)
208 PRK06620 hypothetical protein; 98.4 3.1E-06 6.6E-11 83.8 13.0 57 216-273 11-70 (214)
209 PF13401 AAA_22: AAA domain; P 98.4 2E-06 4.4E-11 75.8 10.5 36 248-283 5-48 (131)
210 TIGR02031 BchD-ChlD magnesium 98.4 8.8E-07 1.9E-11 99.7 9.3 61 415-487 84-154 (589)
211 PRK08116 hypothetical protein; 98.4 9.5E-07 2.1E-11 90.2 8.7 60 225-284 92-154 (268)
212 PRK09862 putative ATP-dependen 98.4 1.1E-05 2.4E-10 89.6 17.4 48 218-272 188-235 (506)
213 PRK06964 DNA polymerase III su 98.4 1.1E-06 2.4E-11 93.0 9.0 69 398-484 115-183 (342)
214 PF09336 Vps4_C: Vps4 C termin 98.4 2.8E-07 6.1E-12 75.4 3.4 35 541-575 28-62 (62)
215 PRK07952 DNA replication prote 98.4 2.4E-06 5.3E-11 86.6 10.7 64 218-284 69-139 (244)
216 COG1239 ChlI Mg-chelatase subu 98.3 1.2E-05 2.5E-10 87.2 16.0 50 218-272 14-63 (423)
217 PRK07993 DNA polymerase III su 98.3 1.1E-05 2.4E-10 85.1 14.7 52 414-483 107-158 (334)
218 PRK06871 DNA polymerase III su 98.3 5.7E-06 1.2E-10 87.2 12.2 52 414-483 106-157 (325)
219 PF13191 AAA_16: AAA ATPase do 98.3 1.3E-06 2.8E-11 80.9 6.5 59 223-283 2-63 (185)
220 cd01120 RecA-like_NTPases RecA 98.3 7.4E-06 1.6E-10 73.1 11.1 34 250-283 2-38 (165)
221 PF14532 Sigma54_activ_2: Sigm 98.3 8.5E-07 1.8E-11 80.9 4.4 56 224-282 1-59 (138)
222 KOG1514|consensus 98.3 3.9E-05 8.4E-10 87.3 18.2 65 221-285 396-470 (767)
223 PRK08181 transposase; Validate 98.2 3.1E-06 6.6E-11 87.0 8.7 36 248-283 107-145 (269)
224 PRK08769 DNA polymerase III su 98.2 1.2E-05 2.6E-10 84.5 13.4 44 226-273 9-52 (319)
225 KOG2680|consensus 98.2 1.8E-05 3.9E-10 83.1 14.2 77 219-296 38-117 (454)
226 KOG2227|consensus 98.2 0.00012 2.6E-09 80.5 20.9 65 220-285 149-218 (529)
227 PRK06526 transposase; Provisio 98.2 2.1E-06 4.5E-11 87.3 6.4 25 247-271 98-122 (254)
228 PRK08939 primosomal protein Dn 98.2 9.4E-06 2E-10 84.7 11.2 58 225-283 135-195 (306)
229 COG1484 DnaC DNA replication p 98.2 9.9E-06 2.2E-10 82.4 10.9 55 226-284 88-145 (254)
230 PF13173 AAA_14: AAA domain 98.2 7.7E-06 1.7E-10 73.7 8.9 36 248-283 3-40 (128)
231 PRK06835 DNA replication prote 98.2 1.2E-05 2.5E-10 85.0 10.9 55 227-284 166-223 (329)
232 PRK09183 transposase/IS protei 98.1 3.2E-06 7E-11 85.9 6.0 36 248-283 103-141 (259)
233 PRK09087 hypothetical protein; 98.1 2.2E-05 4.9E-10 78.3 11.8 53 216-274 16-71 (226)
234 PF00910 RNA_helicase: RNA hel 98.1 5.9E-06 1.3E-10 72.8 6.5 24 250-273 1-24 (107)
235 PRK06090 DNA polymerase III su 98.1 2.8E-05 6.1E-10 81.9 12.6 45 226-274 8-52 (319)
236 PTZ00111 DNA replication licen 98.1 1.2E-05 2.5E-10 94.2 10.6 51 221-271 450-516 (915)
237 KOG0990|consensus 98.1 7.3E-06 1.6E-10 86.3 7.8 60 210-274 30-89 (360)
238 COG4650 RtcR Sigma54-dependent 98.1 6E-06 1.3E-10 86.5 7.1 93 249-453 210-308 (531)
239 PF01695 IstB_IS21: IstB-like 98.1 6.9E-06 1.5E-10 79.2 6.2 38 247-284 47-87 (178)
240 PRK08699 DNA polymerase III su 98.1 1E-05 2.2E-10 85.0 8.0 52 414-483 112-163 (325)
241 COG0593 DnaA ATPase involved i 98.0 9.5E-05 2.1E-09 80.3 14.5 70 215-284 81-155 (408)
242 KOG2170|consensus 98.0 7.3E-05 1.6E-09 78.5 12.1 51 221-271 82-134 (344)
243 PF01637 Arch_ATPase: Archaeal 98.0 0.00014 3.1E-09 68.9 13.1 44 224-272 2-45 (234)
244 PF05729 NACHT: NACHT domain 97.9 0.00013 2.8E-09 65.9 11.6 24 249-272 2-25 (166)
245 cd01124 KaiC KaiC is a circadi 97.9 0.00023 4.9E-09 66.7 13.2 33 250-282 2-37 (187)
246 COG3283 TyrR Transcriptional r 97.9 0.00013 2.9E-09 78.2 12.3 66 216-285 199-268 (511)
247 PRK06921 hypothetical protein; 97.8 8.8E-05 1.9E-09 75.9 10.3 37 247-283 117-157 (266)
248 PF14516 AAA_35: AAA-like doma 97.8 0.00052 1.1E-08 72.1 16.1 67 224-296 14-83 (331)
249 PRK05917 DNA polymerase III su 97.8 0.00015 3.2E-09 75.7 11.8 50 415-482 95-144 (290)
250 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.6E-10 68.9 4.4 31 250-280 2-32 (121)
251 COG2256 MGS1 ATPase related to 97.8 3E-05 6.6E-10 83.7 6.2 109 359-486 48-157 (436)
252 KOG1970|consensus 97.8 0.00032 7E-09 78.4 13.5 72 208-279 69-142 (634)
253 PF03215 Rad17: Rad17 cell cyc 97.8 2.9E-05 6.3E-10 86.6 5.4 71 208-278 6-76 (519)
254 PF00931 NB-ARC: NB-ARC domain 97.7 0.00063 1.4E-08 67.9 14.1 41 227-270 2-42 (287)
255 COG3284 AcoR Transcriptional a 97.7 7.6E-05 1.6E-09 84.1 8.2 37 249-285 338-376 (606)
256 TIGR01618 phage_P_loop phage n 97.7 0.00013 2.9E-09 73.2 8.9 32 247-280 12-43 (220)
257 PF03969 AFG1_ATPase: AFG1-lik 97.7 0.00035 7.7E-09 74.8 11.9 30 244-273 59-88 (362)
258 PRK15455 PrkA family serine pr 97.7 7.2E-05 1.6E-09 84.4 6.7 62 219-280 74-137 (644)
259 PRK12723 flagellar biosynthesi 97.6 0.0018 3.8E-08 70.2 16.7 75 194-271 118-198 (388)
260 PRK11889 flhF flagellar biosyn 97.6 0.0021 4.5E-08 70.4 16.9 85 194-281 187-278 (436)
261 PHA00729 NTP-binding motif con 97.6 0.00074 1.6E-08 68.3 12.4 25 248-272 18-42 (226)
262 PRK00771 signal recognition pa 97.6 0.0035 7.5E-08 68.9 18.5 37 247-283 95-134 (437)
263 PRK07276 DNA polymerase III su 97.6 0.0021 4.6E-08 67.2 15.9 51 415-483 104-154 (290)
264 PRK13406 bchD magnesium chelat 97.6 0.00095 2.1E-08 75.7 13.8 66 414-491 92-167 (584)
265 PLN03210 Resistant to P. syrin 97.5 0.0055 1.2E-07 74.2 20.9 72 201-275 161-235 (1153)
266 PF06309 Torsin: Torsin; Inte 97.5 0.00034 7.4E-09 65.1 8.3 52 220-271 24-77 (127)
267 PRK14722 flhF flagellar biosyn 97.5 0.0016 3.4E-08 70.3 14.2 24 248-271 138-161 (374)
268 PRK07132 DNA polymerase III su 97.5 0.00074 1.6E-08 70.6 11.3 52 415-484 90-141 (299)
269 PRK08118 topology modulation p 97.5 0.00016 3.5E-09 68.8 5.8 34 248-281 2-35 (167)
270 TIGR02237 recomb_radB DNA repa 97.5 0.0004 8.7E-09 66.9 8.5 35 248-282 13-50 (209)
271 PF03266 NTPase_1: NTPase; In 97.5 0.00012 2.6E-09 70.2 4.7 27 249-275 1-30 (168)
272 COG5271 MDN1 AAA ATPase contai 97.5 0.00063 1.4E-08 83.2 11.3 40 246-285 1542-1581(4600)
273 PRK00131 aroK shikimate kinase 97.5 0.00011 2.4E-09 67.6 4.0 31 248-278 5-35 (175)
274 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00036 7.9E-09 70.4 8.1 38 248-285 33-70 (231)
275 PRK11823 DNA repair protein Ra 97.4 0.0012 2.6E-08 72.4 12.6 35 248-282 81-118 (446)
276 COG1618 Predicted nucleotide k 97.4 0.00054 1.2E-08 66.6 8.6 26 248-273 6-31 (179)
277 PRK09361 radB DNA repair and r 97.4 0.00085 1.8E-08 65.7 10.1 34 248-281 24-60 (225)
278 PRK13947 shikimate kinase; Pro 97.4 0.00012 2.7E-09 68.0 4.1 41 248-290 2-42 (171)
279 PF06745 KaiC: KaiC; InterPro 97.4 0.0014 3E-08 64.2 10.5 53 399-455 99-151 (226)
280 cd00464 SK Shikimate kinase (S 97.4 0.00018 3.8E-09 65.3 4.0 31 249-279 1-31 (154)
281 PRK03839 putative kinase; Prov 97.4 0.00017 3.6E-09 68.2 3.9 31 249-279 2-32 (180)
282 cd00984 DnaB_C DnaB helicase C 97.3 0.0041 8.8E-08 61.1 13.7 34 249-282 15-52 (242)
283 cd01121 Sms Sms (bacterial rad 97.3 0.0037 8.1E-08 67.3 14.4 34 248-281 83-119 (372)
284 PF13671 AAA_33: AAA domain; P 97.3 0.00021 4.4E-09 64.1 3.8 31 250-282 2-32 (143)
285 KOG2035|consensus 97.3 0.0044 9.4E-08 65.0 13.5 56 211-271 3-58 (351)
286 PRK14974 cell division protein 97.3 0.0073 1.6E-07 64.3 15.6 35 247-281 140-177 (336)
287 PF12775 AAA_7: P-loop contain 97.3 0.0005 1.1E-08 70.7 6.4 35 248-282 34-71 (272)
288 cd02020 CMPK Cytidine monophos 97.2 0.00027 5.8E-09 63.4 3.8 30 250-279 2-31 (147)
289 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.01 2.2E-07 59.2 15.1 35 248-282 22-59 (237)
290 PRK00625 shikimate kinase; Pro 97.2 0.0003 6.4E-09 67.9 4.1 31 249-279 2-32 (173)
291 PRK06067 flagellar accessory p 97.2 0.0075 1.6E-07 59.6 13.9 35 248-282 26-63 (234)
292 PRK07261 topology modulation p 97.2 0.00056 1.2E-08 65.2 5.7 35 249-283 2-36 (171)
293 PRK14532 adenylate kinase; Pro 97.2 0.00033 7.1E-09 66.6 4.1 35 249-285 2-36 (188)
294 PRK08533 flagellar accessory p 97.2 0.0061 1.3E-07 61.0 13.0 34 248-281 25-61 (230)
295 cd01122 GP4d_helicase GP4d_hel 97.2 0.0075 1.6E-07 60.5 13.7 34 249-282 32-69 (271)
296 PF13604 AAA_30: AAA domain; P 97.2 0.008 1.7E-07 58.6 13.3 33 249-281 20-55 (196)
297 cd02021 GntK Gluconate kinase 97.2 0.00039 8.5E-09 63.5 3.9 32 250-283 2-33 (150)
298 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00038 8.3E-09 65.5 4.0 34 250-285 2-35 (183)
299 PRK13949 shikimate kinase; Pro 97.1 0.00041 8.8E-09 66.2 3.8 32 248-279 2-33 (169)
300 PRK06217 hypothetical protein; 97.1 0.00047 1E-08 65.8 4.0 31 249-279 3-33 (183)
301 TIGR01425 SRP54_euk signal rec 97.1 0.024 5.2E-07 62.4 17.6 37 247-283 100-139 (429)
302 cd01428 ADK Adenylate kinase ( 97.1 0.00047 1E-08 65.0 3.9 33 250-284 2-34 (194)
303 PRK05818 DNA polymerase III su 97.1 0.002 4.2E-08 66.6 8.5 52 415-484 88-139 (261)
304 PRK10867 signal recognition pa 97.1 0.052 1.1E-06 59.9 20.0 37 247-283 100-140 (433)
305 cd01393 recA_like RecA is a b 97.1 0.0048 1E-07 60.0 10.9 35 248-282 20-63 (226)
306 cd03283 ABC_MutS-like MutS-lik 97.1 0.0059 1.3E-07 59.8 11.5 22 248-269 26-47 (199)
307 PRK03731 aroL shikimate kinase 97.0 0.00062 1.3E-08 63.6 4.2 32 248-279 3-34 (171)
308 cd03214 ABC_Iron-Siderophores_ 97.0 0.0081 1.8E-07 57.1 11.9 23 249-271 27-49 (180)
309 COG1485 Predicted ATPase [Gene 97.0 0.012 2.7E-07 63.1 14.2 30 244-273 62-91 (367)
310 TIGR01313 therm_gnt_kin carboh 97.0 0.00056 1.2E-08 63.4 3.7 32 250-283 1-32 (163)
311 cd00227 CPT Chloramphenicol (C 97.0 0.00046 1E-08 65.3 3.2 35 249-283 4-38 (175)
312 cd01394 radB RadB. The archaea 97.0 0.01 2.2E-07 57.7 12.6 33 249-281 21-56 (218)
313 PRK14530 adenylate kinase; Pro 97.0 0.00072 1.6E-08 66.2 4.4 30 249-278 5-34 (215)
314 TIGR02012 tigrfam_recA protein 97.0 0.0032 7E-08 66.7 9.5 35 248-282 56-93 (321)
315 cd01125 repA Hexameric Replica 97.0 0.021 4.5E-07 56.8 14.6 21 250-270 4-24 (239)
316 PF13481 AAA_25: AAA domain; P 97.0 0.0053 1.2E-07 58.0 9.9 62 403-472 128-190 (193)
317 PRK05800 cobU adenosylcobinami 97.0 0.0062 1.4E-07 58.6 10.4 34 249-282 3-36 (170)
318 PRK09376 rho transcription ter 97.0 0.0015 3.3E-08 71.1 6.9 25 249-273 171-195 (416)
319 PRK14531 adenylate kinase; Pro 97.0 0.00073 1.6E-08 64.6 4.0 34 249-284 4-37 (183)
320 cd00544 CobU Adenosylcobinamid 97.0 0.0092 2E-07 57.5 11.5 33 250-282 2-34 (169)
321 PF00493 MCM: MCM2/3/5 family 96.9 0.00023 5E-09 74.9 0.4 60 221-281 24-90 (331)
322 KOG2543|consensus 96.9 0.0066 1.4E-07 65.8 11.2 66 218-285 3-68 (438)
323 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0056 1.2E-07 61.3 10.0 32 250-281 2-36 (249)
324 COG1241 MCM2 Predicted ATPase 96.9 0.0012 2.6E-08 76.0 5.8 55 220-274 285-346 (682)
325 COG1126 GlnQ ABC-type polar am 96.9 0.0035 7.5E-08 63.6 8.4 42 403-455 142-183 (240)
326 PRK06762 hypothetical protein; 96.9 0.00081 1.8E-08 62.6 3.6 33 248-280 3-35 (166)
327 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.014 2.9E-07 57.9 12.4 22 248-269 30-51 (213)
328 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00095 2.1E-08 62.5 4.1 32 249-282 5-36 (188)
329 COG3854 SpoIIIAA ncharacterize 96.9 0.0018 3.9E-08 66.5 6.2 25 248-272 138-162 (308)
330 PRK05703 flhF flagellar biosyn 96.9 0.022 4.7E-07 62.4 15.0 82 194-282 170-261 (424)
331 TIGR02688 conserved hypothetic 96.9 0.0034 7.4E-08 69.0 8.8 65 182-270 168-232 (449)
332 PRK08154 anaerobic benzoate ca 96.9 0.0016 3.5E-08 67.8 6.1 37 243-279 129-165 (309)
333 COG0703 AroK Shikimate kinase 96.9 0.0007 1.5E-08 66.0 3.2 49 248-301 3-51 (172)
334 KOG3347|consensus 96.9 0.00077 1.7E-08 65.0 3.3 32 248-279 8-39 (176)
335 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0038 8.2E-08 61.1 8.2 34 249-282 21-63 (235)
336 PRK12726 flagellar biosynthesi 96.9 0.019 4.2E-07 62.6 14.2 87 194-283 151-245 (407)
337 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.043 9.3E-07 53.8 15.4 34 248-281 21-57 (229)
338 PRK13946 shikimate kinase; Pro 96.8 0.00089 1.9E-08 64.2 3.6 33 248-280 11-43 (184)
339 KOG2383|consensus 96.8 0.015 3.2E-07 63.6 13.0 27 244-270 111-137 (467)
340 COG1222 RPT1 ATP-dependent 26S 96.8 0.00039 8.4E-09 74.6 1.1 90 318-407 144-236 (406)
341 cd01128 rho_factor Transcripti 96.8 0.002 4.4E-08 65.7 6.2 26 248-273 17-42 (249)
342 PF13238 AAA_18: AAA domain; P 96.8 0.00097 2.1E-08 58.0 3.3 22 250-271 1-22 (129)
343 KOG0477|consensus 96.8 0.0012 2.6E-08 74.9 4.7 58 222-279 450-514 (854)
344 cd03115 SRP The signal recogni 96.8 0.016 3.6E-07 54.3 11.7 33 250-282 3-38 (173)
345 PF07693 KAP_NTPase: KAP famil 96.8 0.017 3.8E-07 59.0 12.8 53 229-283 4-62 (325)
346 PRK04328 hypothetical protein; 96.8 0.037 8.1E-07 55.9 15.0 35 248-282 24-61 (249)
347 PRK10536 hypothetical protein; 96.8 0.0053 1.2E-07 63.5 9.0 46 218-270 52-97 (262)
348 cd01131 PilT Pilus retraction 96.8 0.002 4.3E-08 62.8 5.5 23 250-272 4-26 (198)
349 PRK02496 adk adenylate kinase; 96.8 0.0012 2.6E-08 62.7 3.7 29 249-277 3-31 (184)
350 PRK14528 adenylate kinase; Pro 96.8 0.0013 2.8E-08 63.4 4.0 30 248-277 2-31 (186)
351 KOG1968|consensus 96.8 0.0022 4.7E-08 75.7 6.5 39 249-287 359-397 (871)
352 cd00983 recA RecA is a bacter 96.8 0.0062 1.3E-07 64.7 9.3 35 248-282 56-93 (325)
353 PRK05057 aroK shikimate kinase 96.8 0.0014 3E-08 62.6 4.0 33 248-280 5-37 (172)
354 KOG0652|consensus 96.8 0.00068 1.5E-08 70.5 2.0 90 318-407 164-256 (424)
355 PRK14737 gmk guanylate kinase; 96.7 0.01 2.3E-07 57.7 10.1 25 248-272 5-29 (186)
356 PTZ00088 adenylate kinase 1; P 96.7 0.0014 2.9E-08 66.1 3.9 33 249-283 8-40 (229)
357 TIGR01351 adk adenylate kinase 96.7 0.0013 2.9E-08 64.0 3.7 32 250-283 2-33 (210)
358 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.036 7.8E-07 54.3 13.7 35 248-282 17-54 (224)
359 PRK13808 adenylate kinase; Pro 96.7 0.0051 1.1E-07 65.6 8.2 34 249-284 2-35 (333)
360 PF00448 SRP54: SRP54-type pro 96.7 0.03 6.4E-07 55.1 13.0 34 248-281 2-38 (196)
361 PRK06696 uridine kinase; Valid 96.7 0.0042 9.1E-08 61.3 7.1 55 228-284 5-62 (223)
362 PRK04182 cytidylate kinase; Pr 96.7 0.0016 3.4E-08 60.5 3.8 29 249-277 2-30 (180)
363 PRK13948 shikimate kinase; Pro 96.7 0.0018 3.9E-08 63.1 4.3 42 246-289 9-50 (182)
364 PRK00279 adk adenylate kinase; 96.7 0.0015 3.4E-08 63.8 3.9 34 249-284 2-35 (215)
365 PLN02200 adenylate kinase fami 96.7 0.0022 4.9E-08 64.5 5.0 37 247-285 43-79 (234)
366 COG4088 Predicted nucleotide k 96.6 0.008 1.7E-07 61.0 8.6 23 250-272 4-26 (261)
367 TIGR00959 ffh signal recogniti 96.6 0.095 2.1E-06 57.7 17.6 37 247-283 99-139 (428)
368 cd03243 ABC_MutS_homologs The 96.6 0.031 6.8E-07 54.2 12.4 21 249-269 31-51 (202)
369 PRK06547 hypothetical protein; 96.6 0.0018 3.8E-08 62.4 3.7 33 247-279 15-47 (172)
370 TIGR02858 spore_III_AA stage I 96.6 0.013 2.8E-07 60.7 10.2 25 248-272 112-136 (270)
371 smart00534 MUTSac ATPase domai 96.6 0.026 5.6E-07 54.3 11.7 19 250-268 2-20 (185)
372 COG0194 Gmk Guanylate kinase [ 96.6 0.069 1.5E-06 53.1 14.7 32 249-281 6-37 (191)
373 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.032 6.9E-07 56.8 12.9 34 248-281 37-73 (259)
374 PRK04296 thymidine kinase; Pro 96.6 0.013 2.8E-07 56.8 9.6 31 249-279 4-37 (190)
375 PRK10416 signal recognition pa 96.6 0.1 2.2E-06 55.2 16.8 91 187-281 50-151 (318)
376 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.037 8E-07 53.7 12.5 21 249-269 30-50 (200)
377 TIGR00064 ftsY signal recognit 96.6 0.13 2.7E-06 53.2 17.1 36 247-282 72-110 (272)
378 PF00437 T2SE: Type II/IV secr 96.6 0.0028 6.2E-08 63.8 4.9 51 219-272 102-152 (270)
379 KOG0482|consensus 96.5 0.0035 7.6E-08 69.9 5.9 53 221-273 342-401 (721)
380 COG1102 Cmk Cytidylate kinase 96.5 0.0021 4.5E-08 62.7 3.6 28 250-277 3-30 (179)
381 KOG1051|consensus 96.5 0.024 5.3E-07 67.1 13.1 76 220-300 185-273 (898)
382 PRK04040 adenylate kinase; Pro 96.5 0.0027 5.8E-08 61.9 4.5 29 248-276 3-33 (188)
383 COG1117 PstB ABC-type phosphat 96.5 0.022 4.8E-07 58.1 11.0 160 250-473 36-209 (253)
384 PRK09302 circadian clock prote 96.5 0.044 9.6E-07 60.7 14.5 35 248-282 32-70 (509)
385 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0024 5.3E-08 58.9 3.8 28 250-277 3-30 (171)
386 TIGR02782 TrbB_P P-type conjug 96.5 0.011 2.4E-07 61.8 9.0 24 248-271 133-156 (299)
387 PF00406 ADK: Adenylate kinase 96.5 0.0019 4.1E-08 59.5 3.0 31 252-284 1-31 (151)
388 PRK06731 flhF flagellar biosyn 96.5 0.031 6.8E-07 57.9 12.0 34 248-281 76-112 (270)
389 cd03238 ABC_UvrA The excision 96.5 0.039 8.4E-07 53.5 11.9 21 249-269 23-43 (176)
390 PHA02530 pseT polynucleotide k 96.5 0.0028 6E-08 64.5 4.2 34 248-283 3-37 (300)
391 PRK08233 hypothetical protein; 96.5 0.0033 7.1E-08 58.6 4.3 32 249-280 5-37 (182)
392 TIGR03499 FlhF flagellar biosy 96.4 0.016 3.5E-07 59.7 9.7 79 195-282 144-234 (282)
393 cd03216 ABC_Carb_Monos_I This 96.4 0.02 4.4E-07 53.9 9.5 23 249-271 28-50 (163)
394 PRK14527 adenylate kinase; Pro 96.4 0.0021 4.6E-08 61.6 2.9 28 248-275 7-34 (191)
395 KOG0480|consensus 96.4 0.011 2.5E-07 67.3 9.0 57 218-274 342-405 (764)
396 PF13086 AAA_11: AAA domain; P 96.4 0.0039 8.6E-08 59.1 4.7 22 250-271 20-41 (236)
397 PRK01184 hypothetical protein; 96.4 0.003 6.4E-08 59.9 3.8 29 249-278 3-31 (184)
398 TIGR03575 selen_PSTK_euk L-ser 96.4 0.015 3.2E-07 62.3 9.3 35 250-284 2-40 (340)
399 COG0563 Adk Adenylate kinase a 96.4 0.0027 5.8E-08 61.7 3.5 33 249-283 2-34 (178)
400 cd01129 PulE-GspE PulE/GspE Th 96.4 0.018 3.9E-07 59.0 9.6 49 218-272 57-105 (264)
401 KOG0478|consensus 96.4 0.0055 1.2E-07 70.2 6.3 52 221-272 429-487 (804)
402 cd03247 ABCC_cytochrome_bd The 96.4 0.063 1.4E-06 50.9 12.6 23 249-271 30-52 (178)
403 PRK12724 flagellar biosynthesi 96.4 0.16 3.4E-06 56.2 17.2 85 195-282 165-262 (432)
404 PRK14721 flhF flagellar biosyn 96.4 0.056 1.2E-06 59.4 13.8 71 195-271 142-215 (420)
405 cd03233 ABC_PDR_domain1 The pl 96.4 0.007 1.5E-07 58.8 6.2 24 249-272 35-58 (202)
406 COG1131 CcmA ABC-type multidru 96.4 0.011 2.4E-07 61.4 7.9 63 404-481 143-205 (293)
407 PF13521 AAA_28: AAA domain; P 96.3 0.0031 6.7E-08 58.7 3.4 26 250-276 2-27 (163)
408 TIGR00416 sms DNA repair prote 96.3 0.061 1.3E-06 59.5 13.9 34 248-281 95-131 (454)
409 COG1936 Predicted nucleotide k 96.3 0.0025 5.4E-08 62.4 2.8 30 249-279 2-31 (180)
410 PF08433 KTI12: Chromatin asso 96.3 0.016 3.4E-07 60.0 8.7 51 250-300 4-61 (270)
411 COG3839 MalK ABC-type sugar tr 96.3 0.015 3.2E-07 62.3 8.6 21 250-270 32-52 (338)
412 PRK05973 replicative DNA helic 96.3 0.04 8.7E-07 56.2 11.4 34 248-281 65-101 (237)
413 COG0541 Ffh Signal recognition 96.3 0.38 8.3E-06 53.3 19.5 37 246-282 99-138 (451)
414 PRK12727 flagellar biosynthesi 96.3 0.097 2.1E-06 59.3 15.4 24 248-271 351-374 (559)
415 PRK09354 recA recombinase A; P 96.3 0.023 5E-07 61.0 10.1 35 248-282 61-98 (349)
416 cd03246 ABCC_Protease_Secretio 96.3 0.011 2.4E-07 55.9 6.9 23 249-271 30-52 (173)
417 cd03229 ABC_Class3 This class 96.3 0.012 2.6E-07 55.8 7.2 23 249-271 28-50 (178)
418 PRK04301 radA DNA repair and r 96.3 0.02 4.3E-07 59.7 9.4 35 248-282 103-146 (317)
419 PHA02624 large T antigen; Prov 96.2 0.0066 1.4E-07 69.3 6.0 35 248-282 432-466 (647)
420 TIGR02236 recomb_radA DNA repa 96.2 0.034 7.3E-07 57.6 10.8 35 248-282 96-139 (310)
421 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.011 2.4E-07 63.5 7.3 81 221-301 61-143 (358)
422 cd03278 ABC_SMC_barmotin Barmo 96.2 0.055 1.2E-06 52.9 11.6 24 249-272 24-47 (197)
423 PF08423 Rad51: Rad51; InterP 96.2 0.0074 1.6E-07 61.6 5.6 55 411-469 129-184 (256)
424 cd02027 APSK Adenosine 5'-phos 96.2 0.005 1.1E-07 57.4 4.1 32 250-281 2-36 (149)
425 PRK13900 type IV secretion sys 96.2 0.015 3.2E-07 61.8 7.9 43 223-272 143-185 (332)
426 cd03213 ABCG_EPDR ABCG transpo 96.2 0.01 2.2E-07 57.3 6.2 24 248-271 36-59 (194)
427 PF05707 Zot: Zonular occluden 96.2 0.014 3E-07 56.7 7.0 59 415-484 79-137 (193)
428 PTZ00035 Rad51 protein; Provis 96.1 0.039 8.4E-07 58.7 10.9 33 250-282 121-162 (337)
429 TIGR02655 circ_KaiC circadian 96.1 0.074 1.6E-06 59.0 13.5 35 248-282 264-301 (484)
430 PRK04220 2-phosphoglycerate ki 96.1 0.015 3.2E-07 61.3 7.6 30 246-275 91-120 (301)
431 PRK14526 adenylate kinase; Pro 96.1 0.005 1.1E-07 61.2 3.9 34 249-284 2-35 (211)
432 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.062 1.3E-06 49.7 10.9 23 249-271 27-49 (157)
433 TIGR01420 pilT_fam pilus retra 96.1 0.011 2.4E-07 62.6 6.5 25 248-272 123-147 (343)
434 COG4608 AppF ABC-type oligopep 96.1 0.058 1.3E-06 56.1 11.5 53 249-301 41-95 (268)
435 COG4619 ABC-type uncharacteriz 96.1 0.089 1.9E-06 52.3 12.1 23 249-271 31-53 (223)
436 PF05970 PIF1: PIF1-like helic 96.1 0.028 6E-07 60.0 9.5 27 247-273 22-48 (364)
437 cd03230 ABC_DR_subfamily_A Thi 96.1 0.012 2.7E-07 55.6 6.1 23 249-271 28-50 (173)
438 COG1120 FepC ABC-type cobalami 96.1 0.024 5.1E-07 58.7 8.5 35 250-284 31-67 (258)
439 cd03269 ABC_putative_ATPase Th 96.0 0.098 2.1E-06 50.6 12.3 23 249-271 28-50 (210)
440 TIGR00767 rho transcription te 96.0 0.014 3E-07 63.9 7.0 26 249-274 170-195 (415)
441 PLN03187 meiotic recombination 96.0 0.033 7.2E-07 59.6 9.7 33 250-282 129-170 (344)
442 PF01583 APS_kinase: Adenylyls 96.0 0.014 3.1E-07 56.0 6.3 57 249-305 4-70 (156)
443 KOG0058|consensus 96.0 0.027 5.9E-07 65.0 9.5 23 249-271 496-518 (716)
444 COG0467 RAD55 RecA-superfamily 96.0 0.095 2.1E-06 52.8 12.5 36 248-283 24-62 (260)
445 cd02019 NK Nucleoside/nucleoti 96.0 0.0083 1.8E-07 49.1 4.0 22 250-271 2-23 (69)
446 PLN02674 adenylate kinase 96.0 0.0088 1.9E-07 61.1 5.0 35 248-284 32-66 (244)
447 TIGR02238 recomb_DMC1 meiotic 96.0 0.032 6.9E-07 58.8 9.3 34 249-282 98-140 (313)
448 cd03226 ABC_cobalt_CbiO_domain 96.0 0.16 3.5E-06 49.0 13.5 23 249-271 28-50 (205)
449 COG2884 FtsE Predicted ATPase 96.0 0.11 2.4E-06 52.3 12.3 23 250-272 31-53 (223)
450 PF04851 ResIII: Type III rest 96.0 0.019 4E-07 52.6 6.6 52 226-281 8-59 (184)
451 PRK10078 ribose 1,5-bisphospho 96.0 0.0062 1.3E-07 58.3 3.5 28 249-276 4-31 (186)
452 PF01745 IPT: Isopentenyl tran 95.9 0.0086 1.9E-07 60.8 4.6 35 249-283 3-37 (233)
453 TIGR02655 circ_KaiC circadian 95.9 0.11 2.5E-06 57.5 13.7 34 248-281 22-59 (484)
454 cd03262 ABC_HisP_GlnQ_permease 95.9 0.11 2.4E-06 50.2 12.1 65 401-481 139-203 (213)
455 COG4178 ABC-type uncharacteriz 95.9 0.067 1.4E-06 61.2 12.1 24 248-271 420-443 (604)
456 cd03260 ABC_PstB_phosphate_tra 95.9 0.024 5.3E-07 55.4 7.6 23 249-271 28-50 (227)
457 PRK13543 cytochrome c biogenes 95.9 0.15 3.2E-06 49.9 13.0 66 401-482 141-206 (214)
458 cd03301 ABC_MalK_N The N-termi 95.9 0.1 2.2E-06 50.5 11.8 23 249-271 28-50 (213)
459 COG1124 DppF ABC-type dipeptid 95.9 0.06 1.3E-06 55.5 10.5 36 249-284 35-72 (252)
460 PRK12339 2-phosphoglycerate ki 95.9 0.008 1.7E-07 59.2 4.2 28 248-275 4-31 (197)
461 TIGR02525 plasmid_TraJ plasmid 95.9 0.016 3.5E-07 62.6 6.7 24 249-272 151-174 (372)
462 PRK11607 potG putrescine trans 95.9 0.13 2.8E-06 55.6 13.6 23 249-271 47-69 (377)
463 PRK09544 znuC high-affinity zi 95.9 0.12 2.5E-06 52.3 12.5 70 402-486 125-194 (251)
464 TIGR02673 FtsE cell division A 95.9 0.092 2E-06 50.8 11.4 64 401-480 141-204 (214)
465 PF13245 AAA_19: Part of AAA d 95.9 0.013 2.7E-07 49.6 4.7 31 250-280 13-50 (76)
466 TIGR00960 3a0501s02 Type II (G 95.9 0.14 3.1E-06 49.7 12.7 23 249-271 31-53 (216)
467 PRK09452 potA putrescine/sperm 95.9 0.12 2.6E-06 55.7 13.3 23 249-271 42-64 (375)
468 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.17 3.6E-06 49.4 13.1 23 249-271 32-54 (220)
469 COG1127 Ttg2A ABC-type transpo 95.9 0.063 1.4E-06 55.5 10.3 44 402-453 150-193 (263)
470 cd03228 ABCC_MRP_Like The MRP 95.9 0.023 4.9E-07 53.6 6.8 24 249-272 30-53 (171)
471 TIGR02322 phosphon_PhnN phosph 95.8 0.007 1.5E-07 57.0 3.3 25 249-273 3-27 (179)
472 cd03232 ABC_PDR_domain2 The pl 95.8 0.017 3.7E-07 55.6 6.0 22 249-270 35-56 (192)
473 PRK12608 transcription termina 95.8 0.011 2.5E-07 63.9 5.2 26 248-273 134-159 (380)
474 PRK13975 thymidylate kinase; P 95.8 0.01 2.2E-07 56.4 4.4 28 249-276 4-31 (196)
475 PRK11629 lolD lipoprotein tran 95.8 0.2 4.4E-06 49.4 13.6 23 249-271 37-59 (233)
476 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.8 0.096 2.1E-06 51.7 11.3 23 249-271 50-72 (224)
477 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.12 2.6E-06 51.1 12.0 21 249-269 31-51 (204)
478 PRK00889 adenylylsulfate kinas 95.8 0.012 2.6E-07 55.4 4.6 35 248-282 5-42 (175)
479 PRK05541 adenylylsulfate kinas 95.8 0.009 2E-07 56.3 3.8 25 248-272 8-32 (176)
480 cd03224 ABC_TM1139_LivF_branch 95.8 0.03 6.6E-07 54.4 7.5 65 402-482 137-201 (222)
481 TIGR00150 HI0065_YjeE ATPase, 95.8 0.019 4E-07 53.8 5.7 27 248-274 23-49 (133)
482 PRK11650 ugpC glycerol-3-phosp 95.8 0.15 3.2E-06 54.6 13.2 23 249-271 32-54 (356)
483 PRK05480 uridine/cytidine kina 95.8 0.013 2.8E-07 56.8 4.9 36 248-283 7-43 (209)
484 PRK13833 conjugal transfer pro 95.7 0.035 7.7E-07 58.9 8.4 34 231-271 135-168 (323)
485 PRK14529 adenylate kinase; Pro 95.7 0.0077 1.7E-07 60.7 3.3 35 249-285 2-36 (223)
486 PLN02199 shikimate kinase 95.7 0.0093 2E-07 62.9 4.0 32 248-279 103-134 (303)
487 TIGR02788 VirB11 P-type DNA tr 95.7 0.036 7.9E-07 57.8 8.4 25 248-272 145-169 (308)
488 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.071 1.5E-06 49.3 9.4 23 249-271 28-50 (144)
489 cd03258 ABC_MetN_methionine_tr 95.7 0.033 7.2E-07 54.7 7.6 23 249-271 33-55 (233)
490 cd03263 ABC_subfamily_A The AB 95.7 0.035 7.5E-07 54.0 7.7 65 401-482 137-201 (220)
491 COG1373 Predicted ATPase (AAA+ 95.7 0.022 4.7E-07 61.8 6.8 37 249-285 39-75 (398)
492 PRK04132 replication factor C 95.7 0.0063 1.4E-07 71.8 2.9 52 207-263 5-56 (846)
493 PRK14274 phosphate ABC transpo 95.7 0.12 2.5E-06 52.0 11.5 65 401-482 159-223 (259)
494 TIGR03411 urea_trans_UrtD urea 95.7 0.2 4.3E-06 49.6 13.0 67 401-484 147-213 (242)
495 PLN03186 DNA repair protein RA 95.7 0.042 9.1E-07 58.8 8.8 34 249-282 125-167 (342)
496 cd03215 ABC_Carb_Monos_II This 95.7 0.018 4E-07 54.8 5.5 24 249-272 28-51 (182)
497 cd03227 ABC_Class2 ABC-type Cl 95.7 0.11 2.4E-06 48.8 10.6 25 248-272 22-46 (162)
498 PRK11432 fbpC ferric transport 95.7 0.18 3.9E-06 53.8 13.5 23 249-271 34-56 (351)
499 cd03267 ABC_NatA_like Similar 95.7 0.14 2.9E-06 51.0 11.8 23 249-271 49-71 (236)
500 PRK00091 miaA tRNA delta(2)-is 95.7 0.01 2.2E-07 62.5 3.9 34 248-281 5-38 (307)
No 1
>KOG0738|consensus
Probab=100.00 E-value=1e-59 Score=490.76 Aligned_cols=279 Identities=59% Similarity=0.954 Sum_probs=265.4
Q ss_pred HHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChH
Q psy16204 189 IREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKT 261 (577)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT 261 (577)
-....|.+.|++..|.+.++.++++++|++.|+||.|+.+||+.|++++++|+..|++| +|||++||||||||
T Consensus 180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 35567888999999999999999999999999999999999999999999999999988 57899999999999
Q ss_pred HHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHh
Q psy16204 262 MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRV 341 (577)
Q Consensus 262 ~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (577)
+||||||.||+..||+|+++.+++||.|++|++||-||++
T Consensus 260 lLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFem---------------------------------------- 299 (491)
T KOG0738|consen 260 LLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEM---------------------------------------- 299 (491)
T ss_pred HHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999999999998
Q ss_pred hcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEE
Q psy16204 342 LKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFI 421 (577)
Q Consensus 342 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfI 421 (577)
|+.++|++|||
T Consensus 300 ---------------------------------------------------------------------ARfyAPStIFi 310 (491)
T KOG0738|consen 300 ---------------------------------------------------------------------ARFYAPSTIFI 310 (491)
T ss_pred ---------------------------------------------------------------------HHHhCCceeeh
Confidence 99999999999
Q ss_pred ccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc-----------------
Q psy16204 422 DEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV----------------- 484 (577)
Q Consensus 422 DEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~----------------- 484 (577)
||||.||+.||+.++|++++||+++||.+|||++......+.|+|+||||.||+||.+++||+
T Consensus 311 DEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~L 390 (491)
T KOG0738|consen 311 DEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSAL 390 (491)
T ss_pred hhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHH
Confidence 999999999999999999999999999999999987555577999999999999999999986
Q ss_pred --------ccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204 485 --------VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 485 --------~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ 556 (577)
..+.+++++.||+.++||||+||.++|++|+|+++||.+.+.++.+|..+..+....+|+.+||++|+.+++
T Consensus 391 i~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 391 IKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred HHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 233467899999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q psy16204 557 KSVTAHDLSKYDSWMNEFGS 576 (577)
Q Consensus 557 psv~~~~~~~~~~~~~~~~~ 576 (577)
|||++.++.+|++|+++|||
T Consensus 471 pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 471 PSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred cCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998
No 2
>KOG0733|consensus
Probab=100.00 E-value=1.3e-49 Score=431.25 Aligned_cols=354 Identities=27% Similarity=0.383 Sum_probs=305.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
.+++.+++|+|++.....|.+.+.. +.+|++| +||||+||||||||+||++||.++++||+.|++.++.++
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3478999999999999999999877 8888765 789999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHH------------------------------------------------------------------
Q psy16204 287 YRGESEKLVRLLFE------------------------------------------------------------------ 300 (577)
Q Consensus 287 ~~G~~e~~vr~lF~------------------------------------------------------------------ 300 (577)
+.|++|+.+|+||+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 99999999999998
Q ss_pred --------------------------------------------------------------------Hhhhhhcc----
Q psy16204 301 --------------------------------------------------------------------MVSFLVGL---- 308 (577)
Q Consensus 301 --------------------------------------------------------------------~a~~~~~~---- 308 (577)
...-+...
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 00000000
Q ss_pred -c-----------------------cCcc-------e-----------------------------------------ee
Q psy16204 309 -H-----------------------SNKT-------F-----------------------------------------YL 316 (577)
Q Consensus 309 -~-----------------------~~~~-------~-----------------------------------------~~ 316 (577)
+ ++-. + =|
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 0 0000 0 46
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccC-
Q psy16204 317 VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQS- 395 (577)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 395 (577)
+.|+++.|.++++.+....+++.+++++...+..+.++|...|+|+++++||||||+..+-+-++++.++|...++++.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --CCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCc
Q psy16204 396 --HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP 473 (577)
Q Consensus 396 --~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p 473 (577)
|+|++++.++.+|.+|+..+||||||||||.|++.|+.++ .....|++|+||..|||+... ..|+||||||+|
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R----~gV~viaATNRP 657 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER----RGVYVIAATNRP 657 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc----cceEEEeecCCC
Confidence 4999999999999999999999999999999999997655 677889999999999999853 789999999999
Q ss_pred hhhHHHhhcCccccc-----------------------------ccCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Q psy16204 474 YQLLTLCLEGVVIDV-----------------------------NLDFHKISKMLE--GYTGSDIANLARDAAMMSIRRK 522 (577)
Q Consensus 474 ~~L~~allrr~~i~~-----------------------------~vdl~~LA~~t~--G~sgsDI~~l~~~Aa~~airr~ 522 (577)
+-|+++++|+++++. +|||++||..+. ||||+||..||++|++.|+|+.
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999876543 569999999876 9999999999999999999997
Q ss_pred HhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q psy16204 523 IMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575 (577)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~ 575 (577)
+..+.... ..+........+|..||++|+++++|||++.|..+|+...+.+|
T Consensus 738 ~~~~~~~~-~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 738 LFEIDSSE-DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HhhccccC-cccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 64221100 00000001335899999999999999999999999999988876
No 3
>KOG0730|consensus
Probab=100.00 E-value=2.8e-47 Score=416.66 Aligned_cols=337 Identities=27% Similarity=0.382 Sum_probs=305.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~ 287 (577)
+.+. .+++|.......+++.+.+|++.+..+ +++|+|||||||||.+++++|++.++.++.+++.+++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 899999999999999999999998765 6799999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhhh-----------cccc----------------------Cc---c------------------
Q psy16204 288 RGESEKLVRLLFEMVSFLV-----------GLHS----------------------NK---T------------------ 313 (577)
Q Consensus 288 ~G~~e~~vr~lF~~a~~~~-----------~~~~----------------------~~---~------------------ 313 (577)
.|++++++|..|+.|.... ..++ .+ .
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 9999999999998443322 1111 00 0
Q ss_pred ---e----------------------------------------------------------------------------
Q psy16204 314 ---F---------------------------------------------------------------------------- 314 (577)
Q Consensus 314 ---~---------------------------------------------------------------------------- 314 (577)
|
T Consensus 339 RgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 339 RGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRP 418 (693)
T ss_pred cCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCc
Confidence 0
Q ss_pred -----eeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCC
Q psy16204 315 -----YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGK 389 (577)
Q Consensus 315 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (577)
++++.+|..|++++|++..+.++++.+.|+..+++.+.++|.+||.|++.|+||||||+..+.+...+++++|..
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCC---CCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEE
Q psy16204 390 KGTCQSH---EGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466 (577)
Q Consensus 390 ~~~~~~~---~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlI 466 (577)
.++++.| +|++++.+++.|++|+..+||||||||||.++..|++ +.+...+||+++||.+|||+... ++|+|
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~~~v~~RVlsqLLtEmDG~e~~----k~V~V 573 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SSSGVTDRVLSQLLTEMDGLEAL----KNVLV 573 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-CccchHHHHHHHHHHHccccccc----CcEEE
Confidence 9999966 9999999999999999999999999999999999974 34488899999999999999864 89999
Q ss_pred EEecCCchhhHHHhhcCcccc---------------------------cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy16204 467 LAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKISKMLEGYTGSDIANLARDAAMMSI 519 (577)
Q Consensus 467 IatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~ai 519 (577)
|||||+|+.||++|+|+++++ .++|+++||+.|+||||+||..+|++|++.++
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~ 653 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLAL 653 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 999999999999999966544 35699999999999999999999999999999
Q ss_pred HHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy16204 520 RRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNE 573 (577)
Q Consensus 520 rr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~ 573 (577)
++.+. -..|+.+||++|++..+++++..++++|++|.+.
T Consensus 654 ~e~i~---------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 654 RESIE---------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHhcc---------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 99873 2469999999999999999999999999999764
No 4
>KOG0736|consensus
Probab=100.00 E-value=5e-45 Score=402.84 Aligned_cols=252 Identities=37% Similarity=0.561 Sum_probs=226.1
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
.+.|+|.|+||+|++++|..|.+.|.+|+.+++++ .|||||||||||||.+|||+|.||...|+.|.+.+|++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 45789999999999999999999999999999987 48999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204 286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV 365 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (577)
.|+|++|++||++|+.
T Consensus 744 MYVGqSE~NVR~VFer---------------------------------------------------------------- 759 (953)
T KOG0736|consen 744 MYVGQSEENVREVFER---------------------------------------------------------------- 759 (953)
T ss_pred HHhcchHHHHHHHHHH----------------------------------------------------------------
Confidence 9999999999999997
Q ss_pred cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh-hHHHHHHH
Q psy16204 366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-HEASRRFK 444 (577)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~~~v~ 444 (577)
|+...||||||||+|+++++||..++ .....|++
T Consensus 760 ---------------------------------------------AR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV 794 (953)
T KOG0736|consen 760 ---------------------------------------------ARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV 794 (953)
T ss_pred ---------------------------------------------hhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence 89999999999999999999987554 45788999
Q ss_pred HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcc----------------------------cccccCHHHHH
Q psy16204 445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV----------------------------IDVNLDFHKIS 496 (577)
Q Consensus 445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~----------------------------i~~~vdl~~LA 496 (577)
++||.+||++... ..+.|+||+|||+||.||++++|+++ ++++||+.+||
T Consensus 795 SQLLAELDgls~~--~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiA 872 (953)
T KOG0736|consen 795 SQLLAELDGLSDS--SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIA 872 (953)
T ss_pred HHHHHHhhcccCC--CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHH
Confidence 9999999998854 45789999999999998777777654 45577999999
Q ss_pred HHcC-CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q psy16204 497 KMLE-GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575 (577)
Q Consensus 497 ~~t~-G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~ 575 (577)
+.|. .|||+|+-+||.+|++.|++|.+.+.....+.+..++.....|+++||.+|+++++||++..+|.+|+-.+..|.
T Consensus 873 k~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 873 KKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9995 799999999999999999999886555444444455556678999999999999999999999999999998883
No 5
>KOG0739|consensus
Probab=100.00 E-value=8.8e-45 Score=369.77 Aligned_cols=258 Identities=44% Similarity=0.716 Sum_probs=227.2
Q ss_pred HHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 206 TLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 206 ~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.+...++.+.|+|.|+||.|++.||+.|++++.+|+..|.+| ++|||||||||||++|||++|.+.+..||.|
T Consensus 118 ~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 118 ALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred HhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 344567788999999999999999999999999999999887 6899999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCC
Q psy16204 279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQES 358 (577)
Q Consensus 279 ~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 358 (577)
+.++|+++|.|++|++|+.+|++
T Consensus 198 SSSDLvSKWmGESEkLVknLFem--------------------------------------------------------- 220 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEM--------------------------------------------------------- 220 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhH
Q psy16204 359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHE 438 (577)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~ 438 (577)
|+.+.|+||||||||.+|..| ++++++
T Consensus 221 ----------------------------------------------------ARe~kPSIIFiDEiDslcg~r-~enEse 247 (439)
T KOG0739|consen 221 ----------------------------------------------------ARENKPSIIFIDEIDSLCGSR-SENESE 247 (439)
T ss_pred ----------------------------------------------------HHhcCCcEEEeehhhhhccCC-CCCchH
Confidence 999999999999999999877 456789
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc--------------------------cCH
Q psy16204 439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN--------------------------LDF 492 (577)
Q Consensus 439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~--------------------------vdl 492 (577)
+.+|+..+||.+|.|+.. ++..|+|++|||-||.|+.++.|||.-... -|+
T Consensus 248 asRRIKTEfLVQMqGVG~---d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~ 324 (439)
T KOG0739|consen 248 ASRRIKTEFLVQMQGVGN---DNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDF 324 (439)
T ss_pred HHHHHHHHHHHhhhcccc---CCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhH
Confidence 999999999999999986 457899999999999999999999843221 189
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcC---------ChhH---------------Hhh--h---hccCCCCCC
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQ---------TPAQ---------------IKE--I---KQEDIDLPV 543 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~---------~~~~---------------~~~--~---~~~~~~~~I 543 (577)
.+|+.+|+||||+||.-++++|.|..+|+..... .+.. ++. . .....+++|
T Consensus 325 ~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~v 404 (439)
T KOG0739|consen 325 KELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPV 404 (439)
T ss_pred HHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCc
Confidence 9999999999999999999999999999965321 0111 110 0 112246789
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204 544 TEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576 (577)
Q Consensus 544 t~~df~~Al~~~~psv~~~~~~~~~~~~~~~~~ 576 (577)
|+.||.++|.+.+|+|.++||.++++|.+.||.
T Consensus 405 t~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 405 TMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred cHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999995
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-43 Score=364.05 Aligned_cols=218 Identities=37% Similarity=0.558 Sum_probs=201.3
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+...+.|.+++++|+|+++.++.|++++.+|+.+|++| +|||||||||||||+||||+|++.++.|++|.+|
T Consensus 140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 55667899999999999999999999999999999876 8999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
+|..||.|+...+||++|++
T Consensus 220 ElVqKYiGEGaRlVRelF~l------------------------------------------------------------ 239 (406)
T COG1222 220 ELVQKYIGEGARLVRELFEL------------------------------------------------------------ 239 (406)
T ss_pred HHHHHHhccchHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~ 439 (577)
|+.++||||||||||+|+.+|... +.+..
T Consensus 240 -------------------------------------------------ArekaPsIIFiDEIDAIg~kR~d~~t~gDrE 270 (406)
T COG1222 240 -------------------------------------------------AREKAPSIIFIDEIDAIGAKRFDSGTSGDRE 270 (406)
T ss_pred -------------------------------------------------HhhcCCeEEEEechhhhhcccccCCCCchHH
Confidence 999999999999999999999543 44667
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl 492 (577)
..|.+-+||.+|||+... ++|=||||||+++.||++++|+++++. +|||
T Consensus 271 VQRTmleLL~qlDGFD~~----~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~ 346 (406)
T COG1222 271 VQRTMLELLNQLDGFDPR----GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL 346 (406)
T ss_pred HHHHHHHHHHhccCCCCC----CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH
Confidence 788899999999999964 889999999999999999999987765 4589
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 557 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p 557 (577)
+.||+.|+|+||+||+++|.+|.|.|+|+.. ..||++||.+|.+++..
T Consensus 347 e~la~~~~g~sGAdlkaictEAGm~AiR~~R-----------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 347 ELLARLTEGFSGADLKAICTEAGMFAIRERR-----------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----------------CeecHHHHHHHHHHHHh
Confidence 9999999999999999999999999999975 47999999999998754
No 7
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.4e-40 Score=369.25 Aligned_cols=358 Identities=28% Similarity=0.392 Sum_probs=275.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
.+.+.|++|+|++.+++.|.+++.+|+.+++.+ +++|||||||||||++|++||++++.+|+.+++.++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 367899999999999999999999998887653 689999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhh------------------------------------hccccCcceeeccccCC--------
Q psy16204 287 YRGESEKLVRLLFEMVSFL------------------------------------VGLHSNKTFYLVGVLNG-------- 322 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~a~~~------------------------------------~~~~~~~~~~~~~~~~~-------- 322 (577)
|.|+.+..++.+|+.|... .+...+..++++.-.|.
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al 331 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPAL 331 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHH
Confidence 9999999999999764211 11122223333321110
Q ss_pred --------------------------------------------------------------------------------
Q psy16204 323 -------------------------------------------------------------------------------- 322 (577)
Q Consensus 323 -------------------------------------------------------------------------------- 322 (577)
T Consensus 332 ~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~ 411 (733)
T TIGR01243 332 RRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAE 411 (733)
T ss_pred hCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence
Q ss_pred ---------------------------------------CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 323 ---------------------------------------EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 323 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
.|.++.|....+.++.+.+.++-..+......+..+|.+++
T Consensus 412 ~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giL 491 (733)
T TIGR01243 412 EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVL 491 (733)
T ss_pred cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEE
Confidence 00111111111111122222222222223344677889999
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEAS 440 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~ 440 (577)
.|+++|+||+..+.+......+++....+.+ .++|+.++.++.+|..|+...||||||||||.|++.|+.+......
T Consensus 492 L~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~ 571 (733)
T TIGR01243 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVT 571 (733)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHH
Confidence 9999999999997777777777777666554 4699999999999999999999999999999999998766556677
Q ss_pred HHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHH
Q psy16204 441 RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFH 493 (577)
Q Consensus 441 ~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~ 493 (577)
++++++||..||++.. ..+|+||||||+|+.|+++++|+.+++ .++|++
T Consensus 572 ~~~~~~lL~~ldg~~~----~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~ 647 (733)
T TIGR01243 572 DRIVNQLLTEMDGIQE----LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLE 647 (733)
T ss_pred HHHHHHHHHHhhcccC----CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHH
Confidence 8999999999999874 367999999999999999999844332 346899
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh-ccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy16204 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK-QEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMN 572 (577)
Q Consensus 494 ~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~-~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~ 572 (577)
.||+.|+||||+||.++|++|++.++++.........+.... ....+..|+.+||.+|+++++||++++++..|++|.+
T Consensus 648 ~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~ 727 (733)
T TIGR01243 648 ELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAK 727 (733)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999876432211111110 0112457999999999999999999999999999999
Q ss_pred hhCC
Q psy16204 573 EFGS 576 (577)
Q Consensus 573 ~~~~ 576 (577)
+||.
T Consensus 728 ~~~~ 731 (733)
T TIGR01243 728 ELKR 731 (733)
T ss_pred Hhcc
Confidence 9985
No 8
>KOG0737|consensus
Probab=100.00 E-value=8.7e-38 Score=325.35 Aligned_cols=249 Identities=39% Similarity=0.632 Sum_probs=215.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCcccc---------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF---------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~---------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
-.++|.||+|++.+++.|++.+.+|+++|++| +|||||||||||||++|+++|++.|++|+.|+.+.+++|
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 45899999999999999999999999999987 689999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204 287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 366 (577)
|+|+.+++++.+|..
T Consensus 167 WfgE~eKlv~AvFsl----------------------------------------------------------------- 181 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSL----------------------------------------------------------------- 181 (386)
T ss_pred hHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence 999999999999965
Q ss_pred ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHH
Q psy16204 367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAE 446 (577)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~ 446 (577)
|.+-.||||||||||.+...| ...+|+..+.+.++
T Consensus 182 --------------------------------------------AsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~e 216 (386)
T KOG0737|consen 182 --------------------------------------------ASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNE 216 (386)
T ss_pred --------------------------------------------hhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHH
Confidence 778899999999999999999 67889999999999
Q ss_pred HHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcc-------------------------cccccCHHHHHHHcCC
Q psy16204 447 LLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV-------------------------IDVNLDFHKISKMLEG 501 (577)
Q Consensus 447 LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~-------------------------i~~~vdl~~LA~~t~G 501 (577)
|....||+.++ +...|+|+||||+|.+||.+++||++ ++.++|+.++|.+|+|
T Consensus 217 FM~~WDGl~s~--~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~G 294 (386)
T KOG0737|consen 217 FMALWDGLSSK--DSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEG 294 (386)
T ss_pred HHHHhccccCC--CCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCC
Confidence 99999999986 55679999999999999999999863 3457799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC-ChhHHhh----hh------ccCCCCCCCHHHHHHHHHHhCCCCCHHH--HHHHH
Q psy16204 502 YTGSDIANLARDAAMMSIRRKIMGQ-TPAQIKE----IK------QEDIDLPVTEKDFREAIARCRKSVTAHD--LSKYD 568 (577)
Q Consensus 502 ~sgsDI~~l~~~Aa~~airr~~~~~-~~~~~~~----~~------~~~~~~~It~~df~~Al~~~~psv~~~~--~~~~~ 568 (577)
|||+||.++|+.|++.++|+.+... ...+.+. .. ....-++++++||.+|+.++-++++... ....+
T Consensus 295 ySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~ 374 (386)
T KOG0737|consen 295 YSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALK 374 (386)
T ss_pred CcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHH
Confidence 9999999999999999999987542 0001110 00 0112478999999999998888765543 45678
Q ss_pred HHHHhhCC
Q psy16204 569 SWMNEFGS 576 (577)
Q Consensus 569 ~~~~~~~~ 576 (577)
.|.+.||.
T Consensus 375 ~~~~~~~e 382 (386)
T KOG0737|consen 375 QWNELYGE 382 (386)
T ss_pred HHHhhhcc
Confidence 89998874
No 9
>KOG0740|consensus
Probab=100.00 E-value=3.8e-37 Score=327.67 Aligned_cols=264 Identities=47% Similarity=0.725 Sum_probs=233.6
Q ss_pred cCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHH
Q psy16204 197 TGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.+++...++...+++..+.+++.|++|.|++.+++.+.+++.+|..++..| +++||.||||+|||+|+++||.
T Consensus 129 ~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 129 KEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred ccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence 445666677777889999999999999999999999999999999988876 6799999999999999999999
Q ss_pred HhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCC
Q psy16204 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTA 349 (577)
Q Consensus 270 el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 349 (577)
|+++.|+.++++.|+++|+|+.|++||.||..
T Consensus 209 E~~atff~iSassLtsK~~Ge~eK~vralf~v------------------------------------------------ 240 (428)
T KOG0740|consen 209 ESGATFFNISASSLTSKYVGESEKLVRALFKV------------------------------------------------ 240 (428)
T ss_pred hhcceEeeccHHHhhhhccChHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999999986
Q ss_pred cccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEcccccccc
Q psy16204 350 PTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCS 429 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~ 429 (577)
|++.+|+||||||||++..
T Consensus 241 -------------------------------------------------------------Ar~~qPsvifidEidslls 259 (428)
T KOG0740|consen 241 -------------------------------------------------------------ARSLQPSVIFIDEIDSLLS 259 (428)
T ss_pred -------------------------------------------------------------HHhcCCeEEEechhHHHHh
Confidence 8999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc----------------------
Q psy16204 430 MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------- 487 (577)
Q Consensus 430 ~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------- 487 (577)
+| .+.+++..+++..++|.++++.... ..++|+||+|||+||.++.+++|+|.-.
T Consensus 260 ~R-s~~e~e~srr~ktefLiq~~~~~s~--~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 260 KR-SDNEHESSRRLKTEFLLQFDGKNSA--PDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred hc-CCcccccchhhhhHHHhhhccccCC--CCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 99 7888999999999999999998865 5568999999999999999999976221
Q ss_pred ----cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHH
Q psy16204 488 ----VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHD 563 (577)
Q Consensus 488 ----~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~ 563 (577)
.+.|++.||+.|+||+|+||.++|.+|++..+|..... ..+..+.. +.-++|+..||..|+..++|+++...
T Consensus 337 ~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~---~~~~~~~~-~~~r~i~~~df~~a~~~i~~~~s~~~ 412 (428)
T KOG0740|consen 337 PNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT---TDLEFIDA-DKIRPITYPDFKNAFKNIKPSVSLEG 412 (428)
T ss_pred CCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc---hhhhhcch-hccCCCCcchHHHHHHhhccccCccc
Confidence 12378999999999999999999999999998886421 01121221 22378999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q psy16204 564 LSKYDSWMNEFGS 576 (577)
Q Consensus 564 ~~~~~~~~~~~~~ 576 (577)
+.+|+.|..+||+
T Consensus 413 l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 413 LEKYEKWDKEFGS 425 (428)
T ss_pred cchhHHHhhhhcc
Confidence 9999999999997
No 10
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-35 Score=315.64 Aligned_cols=224 Identities=43% Similarity=0.649 Sum_probs=200.9
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.....+.+.|.+|+|++.+++.+++++.+|+.+++.+ +++|||||||||||+||+++|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 3345778999999999999999999999999998843 58999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204 283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI 362 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (577)
++++|+|++|++++.+|..
T Consensus 312 l~sk~vGesek~ir~~F~~------------------------------------------------------------- 330 (494)
T COG0464 312 LLSKWVGESEKNIRELFEK------------------------------------------------------------- 330 (494)
T ss_pred HhccccchHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999987
Q ss_pred ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204 363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR 442 (577)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~ 442 (577)
|++..||||||||||++++.|+.+. +...++
T Consensus 331 ------------------------------------------------A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r 361 (494)
T COG0464 331 ------------------------------------------------ARKLAPSIIFIDEIDSLASGRGPSE-DGSGRR 361 (494)
T ss_pred ------------------------------------------------HHcCCCcEEEEEchhhhhccCCCCC-chHHHH
Confidence 8889999999999999999986543 334479
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc-----------------------------cccCHH
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID-----------------------------VNLDFH 493 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~-----------------------------~~vdl~ 493 (577)
++++||.+|++.... .+|+||+|||+|+.|+++++|.++++ .+++++
T Consensus 362 ~~~~lL~~~d~~e~~----~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~ 437 (494)
T COG0464 362 VVGQLLTELDGIEKA----EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLE 437 (494)
T ss_pred HHHHHHHHhcCCCcc----CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHH
Confidence 999999999998854 67999999999999999999933222 256889
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy16204 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 570 (577)
Q Consensus 494 ~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~ 570 (577)
.+++.++||+|+||..+|++|++.++++.. ...||.+||.+|++..+|+++ |++|
T Consensus 438 ~l~~~t~~~sgadi~~i~~ea~~~~~~~~~----------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 438 ELAEITEGYSGADIAALVREAALEALREAR----------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhc----------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 999999999999999999999999999864 357999999999999999998 8888
No 11
>KOG0734|consensus
Probab=100.00 E-value=8.4e-35 Score=312.81 Aligned_cols=210 Identities=34% Similarity=0.471 Sum_probs=187.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHC---cC----CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVL---PT----IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~---pl----~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~ 287 (577)
..++.|+||-|.++||++|++.+.+ |. ...++|+||||.||||||||+||||+|.|.++|||+.+++++-+-|
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 3468999999999999999998754 22 2245679999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204 288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV 367 (577)
Q Consensus 288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
+|...+.||++|.+
T Consensus 378 VGvGArRVRdLF~a------------------------------------------------------------------ 391 (752)
T KOG0734|consen 378 VGVGARRVRDLFAA------------------------------------------------------------------ 391 (752)
T ss_pred hcccHHHHHHHHHH------------------------------------------------------------------
Confidence 99999999999987
Q ss_pred cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHH
Q psy16204 368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAEL 447 (577)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~L 447 (577)
|++.+||||||||||.++.+|.....+ ..+..+|+|
T Consensus 392 -------------------------------------------Ak~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQL 427 (752)
T KOG0734|consen 392 -------------------------------------------AKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQL 427 (752)
T ss_pred -------------------------------------------HHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHH
Confidence 899999999999999999999765555 888999999
Q ss_pred HHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHHHHHHcC
Q psy16204 448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHKISKMLE 500 (577)
Q Consensus 448 L~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~LA~~t~ 500 (577)
|..|||+..+ ..|+||+|||.|+.||++|.|+++|+. +||+.-||.-|.
T Consensus 428 LvEmDGF~qN----eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~ 503 (752)
T KOG0734|consen 428 LVEMDGFKQN----EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTP 503 (752)
T ss_pred HHHhcCcCcC----CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCC
Confidence 9999999965 689999999999999999999887764 458899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 501 G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
||+|+||++|++.||+.|..... ..||++||+.|-.++
T Consensus 504 GFsGAdLaNlVNqAAlkAa~dga-----------------~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 504 GFSGADLANLVNQAALKAAVDGA-----------------EMVTMKHLEFAKDRI 541 (752)
T ss_pred CCchHHHHHHHHHHHHHHHhcCc-----------------ccccHHHHhhhhhhe
Confidence 99999999999999998865542 469999999998876
No 12
>KOG0728|consensus
Probab=100.00 E-value=5.5e-34 Score=286.08 Aligned_cols=231 Identities=35% Similarity=0.527 Sum_probs=207.2
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+..++.|..+++-|+|++..+..+++.+.+|..+|++| +|+|||||||+|||.||+++|....|.|++|+++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 55677888899999999999999999999999999987 7899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++..+|.|+...+||++|.|
T Consensus 216 elvqk~igegsrmvrelfvm------------------------------------------------------------ 235 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVM------------------------------------------------------------ 235 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~ 439 (577)
|+.++|+|||+||||+|++.|.. .+.+..
T Consensus 236 -------------------------------------------------arehapsiifmdeidsigs~r~e~~~ggdse 266 (404)
T KOG0728|consen 236 -------------------------------------------------AREHAPSIIFMDEIDSIGSSRVESGSGGDSE 266 (404)
T ss_pred -------------------------------------------------HHhcCCceEeeecccccccccccCCCCccHH
Confidence 99999999999999999999843 344667
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc---------------------------CH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL---------------------------DF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v---------------------------dl 492 (577)
..+.+-+||.++||+... +++-||+|||+.+-|+++++|+.+++..+ ++
T Consensus 267 vqrtmlellnqldgfeat----knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l 342 (404)
T KOG0728|consen 267 VQRTMLELLNQLDGFEAT----KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL 342 (404)
T ss_pred HHHHHHHHHHhccccccc----cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH
Confidence 788889999999999964 88999999999999999999998877543 78
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 570 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~ 570 (577)
..+|+...|.||+++..+|.+|.|.|+|+.. ..+|.+||+-|+.++-..-+..+++--+-|
T Consensus 343 ~kiaekm~gasgaevk~vcteagm~alrerr-----------------vhvtqedfemav~kvm~k~~e~nms~~kl~ 403 (404)
T KOG0728|consen 343 RKIAEKMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 403 (404)
T ss_pred HHHHHhCCCCccchhhhhhhhhhHHHHHHhh-----------------ccccHHHHHHHHHHHHhccccccchHHHhh
Confidence 9999999999999999999999999999875 579999999999997665565555544444
No 13
>KOG0735|consensus
Probab=100.00 E-value=9.2e-34 Score=311.82 Aligned_cols=236 Identities=30% Similarity=0.489 Sum_probs=203.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccc
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR 288 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~ 288 (577)
...|.||+|+.++|+.|.+.+.||-+.|.+| .|||||||||||||.||-++|..++..|+.|.+.++++||.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 3799999999999999999999999998877 58999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccccc
Q psy16204 289 GESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVD 368 (577)
Q Consensus 289 G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 368 (577)
|.+|.+||++|+.
T Consensus 743 GaSEq~vR~lF~r------------------------------------------------------------------- 755 (952)
T KOG0735|consen 743 GASEQNVRDLFER------------------------------------------------------------------- 755 (952)
T ss_pred cccHHHHHHHHHH-------------------------------------------------------------------
Confidence 9999999999987
Q ss_pred CCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHH
Q psy16204 369 GLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL 448 (577)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL 448 (577)
|+...|||+||||+|+++++||-++ .....||+|+||
T Consensus 756 ------------------------------------------A~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlL 792 (952)
T KOG0735|consen 756 ------------------------------------------AQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLL 792 (952)
T ss_pred ------------------------------------------hhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHH
Confidence 8888999999999999999997665 355679999999
Q ss_pred HHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHHHHHHcCC
Q psy16204 449 IQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHKISKMLEG 501 (577)
Q Consensus 449 ~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~LA~~t~G 501 (577)
.+|||..+- +.|.|+|||.+|+.|+++++|+++++. ++||+.+|.+|+|
T Consensus 793 TelDG~Egl----~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 793 TELDGAEGL----DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDG 868 (952)
T ss_pred Hhhcccccc----ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCC
Confidence 999998864 789999999999999999999887764 4589999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHH--HhCCCCCHHHHHHHHHHHHhh
Q psy16204 502 YTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA--RCRKSVTAHDLSKYDSWMNEF 574 (577)
Q Consensus 502 ~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~--~~~psv~~~~~~~~~~~~~~~ 574 (577)
|||+||..|+-+|-+.++++... +..++.....++...+..... +-+|+.++-+-.++.+-.-+|
T Consensus 869 ~tgADlq~ll~~A~l~avh~~l~--------~~~~~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~ 935 (952)
T KOG0735|consen 869 FTGADLQSLLYNAQLAAVHEILK--------REDEEGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQF 935 (952)
T ss_pred CchhhHHHHHHHHHHHHHHHHHH--------hcCccccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhh
Confidence 99999999999999999999763 222333445566666655554 567888777666665554443
No 14
>KOG0731|consensus
Probab=100.00 E-value=1.5e-33 Score=315.52 Aligned_cols=211 Identities=38% Similarity=0.561 Sum_probs=188.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
...+.|+||.|.+++|+.|.|++.. +.+| ++|+|+||+||||||||+||||+|.|.|+||+.++++++.+.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3448999999999999999998855 4444 356899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204 287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 366 (577)
++|.....+|++|..
T Consensus 384 ~~g~~asrvr~lf~~----------------------------------------------------------------- 398 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPL----------------------------------------------------------------- 398 (774)
T ss_pred hcccchHHHHHHHHH-----------------------------------------------------------------
Confidence 999999999999986
Q ss_pred ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC---CCChhHHHHHH
Q psy16204 367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG---SDSEHEASRRF 443 (577)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~---~~~~~~~~~~v 443 (577)
|+.++||||||||||.++..|+ ..+.+...+..
T Consensus 399 --------------------------------------------ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~t 434 (774)
T KOG0731|consen 399 --------------------------------------------ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQT 434 (774)
T ss_pred --------------------------------------------hhccCCeEEEecccccccccccccccCCCChHHHHH
Confidence 8999999999999999999994 34556778899
Q ss_pred HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc----------------------------CHHHH
Q psy16204 444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL----------------------------DFHKI 495 (577)
Q Consensus 444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v----------------------------dl~~L 495 (577)
+|+||..|||+... +.|+|+|+||+|+.||++++|+++++..+ |+..|
T Consensus 435 lnQll~emDgf~~~----~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~ 510 (774)
T KOG0731|consen 435 LNQLLVEMDGFETS----KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKL 510 (774)
T ss_pred HHHHHHHhcCCcCC----CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHH
Confidence 99999999999864 78999999999999999999998887533 56779
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204 496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ 556 (577)
|.+|.||+|+||+++|.+|+..+.|+.. ..|+..||+.|+++..
T Consensus 511 a~~t~gf~gadl~n~~neaa~~a~r~~~-----------------~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 511 ASLTPGFSGADLANLCNEAALLAARKGL-----------------REIGTKDLEYAIERVI 554 (774)
T ss_pred HhcCCCCcHHHHHhhhhHHHHHHHHhcc-----------------CccchhhHHHHHHHHh
Confidence 9999999999999999999999999875 4699999999999653
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.5e-33 Score=300.08 Aligned_cols=225 Identities=21% Similarity=0.284 Sum_probs=192.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcC-----CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPT-----IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE 290 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl-----~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~ 290 (577)
+.+.|++|+|++.+|+.|.+...... ..-..++|+|||||||||||++||+||++++.+|+.++++.+.++|+|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE 302 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence 46789999999999999987542210 1123458999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCC
Q psy16204 291 SEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGL 370 (577)
Q Consensus 291 ~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (577)
++.+++.+|..
T Consensus 303 se~~l~~~f~~--------------------------------------------------------------------- 313 (489)
T CHL00195 303 SESRMRQMIRI--------------------------------------------------------------------- 313 (489)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 99999999976
Q ss_pred CCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHH
Q psy16204 371 GKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQ 450 (577)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~ 450 (577)
++...||||||||||+++..+...++.....++++.||..
T Consensus 314 ----------------------------------------A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~ 353 (489)
T CHL00195 314 ----------------------------------------AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITW 353 (489)
T ss_pred ----------------------------------------HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHH
Confidence 7778999999999999988765555567788999999999
Q ss_pred HhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc-----------------------------ccCHHHHHHHcCC
Q psy16204 451 MDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV-----------------------------NLDFHKISKMLEG 501 (577)
Q Consensus 451 mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~-----------------------------~vdl~~LA~~t~G 501 (577)
|+... .+|+||||||+++.|+++++|+.+++. ++|++.||+.|+|
T Consensus 354 l~~~~------~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G 427 (489)
T CHL00195 354 LSEKK------SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK 427 (489)
T ss_pred HhcCC------CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC
Confidence 98543 569999999999999999998554432 3478999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHh
Q psy16204 502 YTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS--VTAHDLSKYDSWMNE 573 (577)
Q Consensus 502 ~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps--v~~~~~~~~~~~~~~ 573 (577)
|||+||+++|.+|+..++.+. ..+|.+||..|++.++|+ +..+++..|.+|...
T Consensus 428 fSGAdI~~lv~eA~~~A~~~~------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 428 FSGAEIEQSIIEAMYIAFYEK------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred CCHHHHHHHHHHHHHHHHHcC------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 999999999999998887552 469999999999999998 577899999999875
No 16
>KOG0727|consensus
Probab=100.00 E-value=1.8e-33 Score=282.61 Aligned_cols=221 Identities=32% Similarity=0.490 Sum_probs=196.3
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
......|.+++.||+|++-.|+.+++++.+|+.+.+++ +|||+|||||||||+|||++|+...+.|++|.++
T Consensus 144 l~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgs 223 (408)
T KOG0727|consen 144 LGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223 (408)
T ss_pred cCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH
Confidence 34456788999999999999999999999999887654 7899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++..+|.|+...+||++|..
T Consensus 224 efvqkylgegprmvrdvfrl------------------------------------------------------------ 243 (408)
T KOG0727|consen 224 EFVQKYLGEGPRMVRDVFRL------------------------------------------------------------ 243 (408)
T ss_pred HHHHHHhccCcHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999986
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~ 439 (577)
|+.++|+||||||||.|+.+|-. .+.+..
T Consensus 244 -------------------------------------------------akenapsiifideidaiatkrfdaqtgadre 274 (408)
T KOG0727|consen 244 -------------------------------------------------AKENAPSIIFIDEIDAIATKRFDAQTGADRE 274 (408)
T ss_pred -------------------------------------------------HhccCCcEEEeehhhhHhhhhccccccccHH
Confidence 89999999999999999999843 344667
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl 492 (577)
..+++-+||.+|||+... .||-||+|||+.+.|+++++|+++++. ++|+
T Consensus 275 vqril~ellnqmdgfdq~----~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl 350 (408)
T KOG0727|consen 275 VQRILIELLNQMDGFDQT----TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL 350 (408)
T ss_pred HHHHHHHHHHhccCcCcc----cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH
Confidence 788999999999999864 789999999999999999999876654 3478
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh-CCCCC
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC-RKSVT 560 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~-~psv~ 560 (577)
+.+..+-+-.||+||..+|++|.|.++|+.. -.|..+||++|.+.. ++..+
T Consensus 351 e~~v~rpdkis~adi~aicqeagm~avr~nr-----------------yvvl~kd~e~ay~~~vk~~~~ 402 (408)
T KOG0727|consen 351 EDLVARPDKISGADINAICQEAGMLAVRENR-----------------YVVLQKDFEKAYKTVVKKDET 402 (408)
T ss_pred HHHhcCccccchhhHHHHHHHHhHHHHHhcc-----------------eeeeHHHHHHHHHhhcCCccc
Confidence 8888888999999999999999999999975 468899999999874 44433
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=292.81 Aligned_cols=219 Identities=34% Similarity=0.486 Sum_probs=190.0
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
..+.+.|.++|+||+|++.+++.|++++.+|+.+++. ++++|||||||||||++|+++|++++.+|+.+.++
T Consensus 134 ~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s 213 (398)
T PTZ00454 134 LQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGS 213 (398)
T ss_pred hcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 3445688999999999999999999999999988765 37899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++..+|.|+.+..++++|..
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~------------------------------------------------------------ 233 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRL------------------------------------------------------------ 233 (398)
T ss_pred HHHHHhcchhHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999988876
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~ 439 (577)
++...||||||||||.++..|.+. +.+..
T Consensus 234 -------------------------------------------------A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~ 264 (398)
T PTZ00454 234 -------------------------------------------------ARENAPSIIFIDEVDSIATKRFDAQTGADRE 264 (398)
T ss_pred -------------------------------------------------HHhcCCeEEEEECHhhhccccccccCCccHH
Confidence 778899999999999999877432 22345
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl 492 (577)
..+++..||..||++... .+|+||+|||+|+.|+++++|+.+++ .++|+
T Consensus 265 ~~r~l~~LL~~ld~~~~~----~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~ 340 (398)
T PTZ00454 265 VQRILLELLNQMDGFDQT----TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL 340 (398)
T ss_pred HHHHHHHHHHHhhccCCC----CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH
Confidence 668889999999987643 56999999999999999998854432 24588
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
..+|..++||+|+||.++|++|++.|+|+.. ..|+.+||.+|+.++...
T Consensus 341 ~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~-----------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 341 EDFVSRPEKISAADIAAICQEAGMQAVRKNR-----------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998853 479999999999997554
No 18
>KOG0729|consensus
Probab=100.00 E-value=2.4e-32 Score=276.05 Aligned_cols=219 Identities=35% Similarity=0.508 Sum_probs=195.6
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
-+.+++.|.++++||+|..+.++.|++.+.+|+.+|+.| +|||+|||||||||.+||++|+..++.|++|-+
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvig 244 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIG 244 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehh
Confidence 355678899999999999999999999999999999865 899999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCC
Q psy16204 281 STLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP 360 (577)
Q Consensus 281 s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (577)
+++..+|+|+...+||++|+|
T Consensus 245 selvqkyvgegarmvrelf~m----------------------------------------------------------- 265 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEM----------------------------------------------------------- 265 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999998
Q ss_pred ccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhH
Q psy16204 361 SIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHE 438 (577)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~ 438 (577)
|+...-|||||||||.++..|-.+ +.+.
T Consensus 266 --------------------------------------------------artkkaciiffdeidaiggarfddg~ggdn 295 (435)
T KOG0729|consen 266 --------------------------------------------------ARTKKACIIFFDEIDAIGGARFDDGAGGDN 295 (435)
T ss_pred --------------------------------------------------hcccceEEEEeeccccccCccccCCCCCcH
Confidence 666677999999999999998443 4456
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc---------------------------cC
Q psy16204 439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN---------------------------LD 491 (577)
Q Consensus 439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~---------------------------vd 491 (577)
...+.+-+|+.++||+... .|+-|++|||+|+.|+++++|+.+++.. +-
T Consensus 296 evqrtmleli~qldgfdpr----gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir 371 (435)
T KOG0729|consen 296 EVQRTMLELINQLDGFDPR----GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR 371 (435)
T ss_pred HHHHHHHHHHHhccCCCCC----CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh
Confidence 6778888899999998854 8899999999999999999998876653 35
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 557 (577)
Q Consensus 492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p 557 (577)
|+-||..|.+-+|++|.++|.+|.|.|+|... ...|++||.+|+.++-+
T Consensus 372 ~ellarlcpnstgaeirsvcteagmfairarr-----------------k~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 372 FELLARLCPNSTGAEIRSVCTEAGMFAIRARR-----------------KVATEKDFLDAVNKVVK 420 (435)
T ss_pred HHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-----------------hhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999998765 36899999999998643
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=276.02 Aligned_cols=216 Identities=27% Similarity=0.352 Sum_probs=182.2
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-----cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-----FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-----~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~ 287 (577)
...++++++||+||++||+..+-.+.+ +..|+. +++||||||||||||++||+||+++..||+.+.+.+++.+|
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 345678999999999999977655533 344444 38999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204 288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV 367 (577)
Q Consensus 288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
+|+....++++|+.
T Consensus 192 VGdgar~Ihely~r------------------------------------------------------------------ 205 (368)
T COG1223 192 VGDGARRIHELYER------------------------------------------------------------------ 205 (368)
T ss_pred hhhHHHHHHHHHHH------------------------------------------------------------------
Confidence 99999999999987
Q ss_pred cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHH
Q psy16204 368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAEL 447 (577)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~L 447 (577)
|++.+|||+||||+|.|+-.|.-+.-......++|+|
T Consensus 206 -------------------------------------------A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNAL 242 (368)
T COG1223 206 -------------------------------------------ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNAL 242 (368)
T ss_pred -------------------------------------------HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHH
Confidence 8899999999999999999875444444455789999
Q ss_pred HHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc-------------------------ccccccCHHHHHHHcCCC
Q psy16204 448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV-------------------------VIDVNLDFHKISKMLEGY 502 (577)
Q Consensus 448 L~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~-------------------------~i~~~vdl~~LA~~t~G~ 502 (577)
|..|||+..+ ..|+.|||||+|+.|++++..|| ++..+.+++.+++.+.|+
T Consensus 243 LTelDgi~en----eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 243 LTELDGIKEN----EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred HHhccCcccC----CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence 9999999964 77999999999999888887765 444456899999999999
Q ss_pred CHHHH-HHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCC
Q psy16204 503 TGSDI-ANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 559 (577)
Q Consensus 503 sgsDI-~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv 559 (577)
||.|| +.++..|...|+++.. ..|+.+||+.|+++-++.-
T Consensus 319 SgRdikekvlK~aLh~Ai~ed~-----------------e~v~~edie~al~k~r~~r 359 (368)
T COG1223 319 SGRDIKEKVLKTALHRAIAEDR-----------------EKVEREDIEKALKKERKRR 359 (368)
T ss_pred CchhHHHHHHHHHHHHHHHhch-----------------hhhhHHHHHHHHHhhcccc
Confidence 99999 5667777778877753 3699999999999877653
No 20
>KOG0726|consensus
Probab=99.98 E-value=1.7e-32 Score=279.61 Aligned_cols=214 Identities=33% Similarity=0.511 Sum_probs=191.1
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.+.+.|..++.||+|++..++.+++.+.+|+.+|+.+ +||+|||+||||||.||||+|+...+.|+++-+++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 4456778899999999999999999999999999865 89999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204 283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI 362 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (577)
++.+|.|+..++||++|..
T Consensus 255 LiQkylGdGpklvRqlF~v------------------------------------------------------------- 273 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRV------------------------------------------------------------- 273 (440)
T ss_pred HHHHHhccchHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999987
Q ss_pred ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC---CCChhHH
Q psy16204 363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG---SDSEHEA 439 (577)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~---~~~~~~~ 439 (577)
|..++|+|+||||||.++.+|- +++ ...
T Consensus 274 ------------------------------------------------A~e~apSIvFiDEIdAiGtKRyds~Sgg-erE 304 (440)
T KOG0726|consen 274 ------------------------------------------------AEEHAPSIVFIDEIDAIGTKRYDSNSGG-ERE 304 (440)
T ss_pred ------------------------------------------------HHhcCCceEEeehhhhhccccccCCCcc-HHH
Confidence 8889999999999999999983 233 334
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc---------------------------CH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL---------------------------DF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v---------------------------dl 492 (577)
+.+.+-+||.++||+.+. ..|-||+|||+.+.|++++.|+.+++..+ ++
T Consensus 305 iQrtmLELLNQldGFdsr----gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl 380 (440)
T KOG0726|consen 305 IQRTMLELLNQLDGFDSR----GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL 380 (440)
T ss_pred HHHHHHHHHHhccCcccc----CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH
Confidence 556666899999999864 67999999999999999999998776533 56
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
+.+...-+.+||+||+++|.+|.+.|+|+..+ .+|++||.+|.+.+
T Consensus 381 e~li~~kddlSGAdIkAictEaGllAlRerRm-----------------~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 381 EELIMTKDDLSGADIKAICTEAGLLALRERRM-----------------KVTMEDFKKAKEKV 426 (440)
T ss_pred HHHhhcccccccccHHHHHHHHhHHHHHHHHh-----------------hccHHHHHHHHHHH
Confidence 77777778999999999999999999999874 79999999999875
No 21
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.1e-32 Score=298.97 Aligned_cols=213 Identities=37% Similarity=0.552 Sum_probs=191.3
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
......+.+.|+.|.+++|+.|.+.+.. ++.| +.++|+||+||||||||+|||++|.+.++||+.++++++
T Consensus 141 ~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~F 219 (596)
T COG0465 141 LEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 219 (596)
T ss_pred cccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhh
Confidence 3346678999999999999999998754 3322 456899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
.+-|+|-..+.+|++|++
T Consensus 220 VemfVGvGAsRVRdLF~q-------------------------------------------------------------- 237 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQ-------------------------------------------------------------- 237 (596)
T ss_pred hhhhcCCCcHHHHHHHHH--------------------------------------------------------------
Confidence 999999999999999987
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASR 441 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~ 441 (577)
|++++||||||||||.+...|+. ++.+..++
T Consensus 238 -----------------------------------------------Akk~aP~IIFIDEiDAvGr~Rg~g~GggnderE 270 (596)
T COG0465 238 -----------------------------------------------AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDERE 270 (596)
T ss_pred -----------------------------------------------hhccCCCeEEEehhhhcccccCCCCCCCchHHH
Confidence 99999999999999999999963 45577788
Q ss_pred HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHH
Q psy16204 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHK 494 (577)
Q Consensus 442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~ 494 (577)
..+|+||.+|||+..+ ..|+|||+||+|+.+|++|+|+.+++. ++|+..
T Consensus 271 QTLNQlLvEmDGF~~~----~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~ 346 (596)
T COG0465 271 QTLNQLLVEMDGFGGN----EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK 346 (596)
T ss_pred HHHHHHHhhhccCCCC----CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH
Confidence 8999999999999954 779999999999999999999887765 348899
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
+|+.|.||+|+|+++++++|++.+.|+.. ..|++.||.+|+.++
T Consensus 347 iAr~tpGfsGAdL~nl~NEAal~aar~n~-----------------~~i~~~~i~ea~drv 390 (596)
T COG0465 347 IARGTPGFSGADLANLLNEAALLAARRNK-----------------KEITMRDIEEAIDRV 390 (596)
T ss_pred HhhhCCCcccchHhhhHHHHHHHHHHhcC-----------------eeEeccchHHHHHHH
Confidence 99999999999999999999999999974 479999999999986
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=1.1e-31 Score=283.80 Aligned_cols=223 Identities=36% Similarity=0.503 Sum_probs=190.7
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
..+...|.+.|++|+|++++++.|.+++.+|+.+++. +++||||||||||||++|+++|++++.+|+.++++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 3456678899999999999999999999999988754 46899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++..+|.|+++..++.+|+.
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~------------------------------------------------------------ 219 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFEL------------------------------------------------------------ 219 (389)
T ss_pred HHhHhhccchHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999976
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh--hHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE--HEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~--~~~ 439 (577)
++.+.||||||||||.++..+++++. +..
T Consensus 220 -------------------------------------------------a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~ 250 (389)
T PRK03992 220 -------------------------------------------------AREKAPSIIFIDEIDAIAAKRTDSGTSGDRE 250 (389)
T ss_pred -------------------------------------------------HHhcCCeEEEEechhhhhcccccCCCCccHH
Confidence 77788999999999999988754332 234
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl 492 (577)
..+.+..||..++++... .+|+||||||+++.|+++++|+.++ ..++++
T Consensus 251 ~~~~l~~lL~~ld~~~~~----~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~ 326 (389)
T PRK03992 251 VQRTLMQLLAEMDGFDPR----GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL 326 (389)
T ss_pred HHHHHHHHHHhccccCCC----CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH
Confidence 566777888888887642 5799999999999999999874332 224689
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAH 562 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~ 562 (577)
..||..|+||+|+||.++|++|++.++++.. ..|+.+||.+|+.+++++...+
T Consensus 327 ~~la~~t~g~sgadl~~l~~eA~~~a~~~~~-----------------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 327 EELAELTEGASGADLKAICTEAGMFAIRDDR-----------------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999998742 4699999999999999875443
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=280.03 Aligned_cols=217 Identities=33% Similarity=0.474 Sum_probs=186.9
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+.+...|.++|+||+|++.+++.|.+++.+|+.+++. ++++|||||||||||++|+++|.+++.+|+.+.++
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence 4456788899999999999999999999999988764 36899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++..+|.|+.+..++.+|..
T Consensus 252 eL~~k~~Ge~~~~vr~lF~~------------------------------------------------------------ 271 (438)
T PTZ00361 252 ELIQKYLGDGPKLVRELFRV------------------------------------------------------------ 271 (438)
T ss_pred hhhhhhcchHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999876
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~ 439 (577)
|+.+.||||||||||.++..|... +.+..
T Consensus 272 -------------------------------------------------A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e 302 (438)
T PTZ00361 272 -------------------------------------------------AEENAPSIVFIDEIDAIGTKRYDATSGGEKE 302 (438)
T ss_pred -------------------------------------------------HHhCCCcEEeHHHHHHHhccCCCCCCcccHH
Confidence 677789999999999999877432 22334
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl 492 (577)
..+.+..||..+|++... .+|.||+|||+++.|+++++|+.++ ..++++
T Consensus 303 ~qr~ll~LL~~Ldg~~~~----~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl 378 (438)
T PTZ00361 303 IQRTMLELLNQLDGFDSR----GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL 378 (438)
T ss_pred HHHHHHHHHHHHhhhccc----CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH
Confidence 556778899999987642 5699999999999999999875433 235688
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ 556 (577)
..++..++||+|+||.++|++|++.|+|+.. ..|+.+||++|+.++.
T Consensus 379 ~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r-----------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 379 EEFIMAKDELSGADIKAICTEAGLLALRERR-----------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC-----------------CccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999863 3699999999999973
No 24
>KOG0652|consensus
Probab=99.97 E-value=5.2e-31 Score=265.85 Aligned_cols=220 Identities=31% Similarity=0.485 Sum_probs=188.7
Q ss_pred HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
...+.+...|..+++||+|++..++.|.+++++|..+++.| +|+|+|||||||||++||+.|...+..|+.+
T Consensus 157 VkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL 236 (424)
T KOG0652|consen 157 VKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL 236 (424)
T ss_pred cceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh
Confidence 33455677888999999999999999999999999998764 7899999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCC
Q psy16204 279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQES 358 (577)
Q Consensus 279 ~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 358 (577)
-+..+..-|.|...++||+.|..
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaL--------------------------------------------------------- 259 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFAL--------------------------------------------------------- 259 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHH---------------------------------------------------------
Confidence 88887777777777777766654
Q ss_pred CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--Ch
Q psy16204 359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SE 436 (577)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~ 436 (577)
|+..+|+||||||+|.|+.+|... ..
T Consensus 260 ----------------------------------------------------AKEkaP~IIFIDElDAIGtKRfDSek~G 287 (424)
T KOG0652|consen 260 ----------------------------------------------------AKEKAPTIIFIDELDAIGTKRFDSEKAG 287 (424)
T ss_pred ----------------------------------------------------hhccCCeEEEEechhhhccccccccccc
Confidence 888999999999999999988432 12
Q ss_pred hHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------c
Q psy16204 437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------N 489 (577)
Q Consensus 437 ~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~ 489 (577)
+....|.+-+||.++||+.++ ..|-||||||+.+.|+++++|.++++. +
T Consensus 288 DREVQRTMLELLNQLDGFss~----~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~D 363 (424)
T KOG0652|consen 288 DREVQRTMLELLNQLDGFSSD----DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDD 363 (424)
T ss_pred cHHHHHHHHHHHHhhcCCCCc----cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCC
Confidence 345567777899999999965 779999999999999999998765543 5
Q ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204 490 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 490 vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ 556 (577)
++|++||.-|++|.|++.+++|-+|.|.++||.. ..|+.+||.++|..++
T Consensus 364 vNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 364 VNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHEDFMEGILEVQ 413 (424)
T ss_pred CCHHHHhhcccccCchhheeeehhhhHHHHhccc-----------------ccccHHHHHHHHHHHH
Confidence 5899999999999999999999999999999963 4699999999998764
No 25
>KOG0741|consensus
Probab=99.97 E-value=2.1e-30 Score=278.88 Aligned_cols=241 Identities=23% Similarity=0.367 Sum_probs=191.0
Q ss_pred cccCcHHHHHHHH-HHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCC-eEEEEecCccccccccch
Q psy16204 222 KVAGLTEAKAILQ-EAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGT-TFFNVSSSTLTSKYRGES 291 (577)
Q Consensus 222 dIiG~~~ak~~L~-e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~-~fv~v~~s~l~~k~~G~~ 291 (577)
.|+|++.....+- ++.....-.|++. +|+|||||||||||.+||.|.+-+++ .--.|++.++++||+|++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS 301 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence 6899998887654 4444444344432 79999999999999999999999984 667899999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCC
Q psy16204 292 EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLG 371 (577)
Q Consensus 292 e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (577)
|++||.+|..|+...+.+
T Consensus 302 E~NvR~LFaDAEeE~r~~-------------------------------------------------------------- 319 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRL-------------------------------------------------------------- 319 (744)
T ss_pred HHHHHHHHHhHHHHHHhh--------------------------------------------------------------
Confidence 999999998765332211
Q ss_pred CCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh-hHHHHHHHHHHHHH
Q psy16204 372 KGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-HEASRRFKAELLIQ 450 (577)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~~~v~~~LL~~ 450 (577)
| .+..--||+|||||.||.+||+... ......|+|+||..
T Consensus 320 -------------------g--------------------~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsK 360 (744)
T KOG0741|consen 320 -------------------G--------------------ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSK 360 (744)
T ss_pred -------------------C--------------------ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHh
Confidence 1 1112249999999999999986433 55677899999999
Q ss_pred HhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc-------------------------------ccCHHHHHHHc
Q psy16204 451 MDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV-------------------------------NLDFHKISKML 499 (577)
Q Consensus 451 mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~-------------------------------~vdl~~LA~~t 499 (577)
|||...- .||+||+.||+.+.||.+|+|+++++. +||+++||.+|
T Consensus 361 mDGVeqL----NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 361 MDGVEQL----NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT 436 (744)
T ss_pred cccHHhh----hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence 9998853 789999999999999999999875532 56999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHH
Q psy16204 500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS--VTAHDLSKYDS 569 (577)
Q Consensus 500 ~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps--v~~~~~~~~~~ 569 (577)
.+|||++|+.|++.|...|+.|++............ .....|+++||..||.+++|. ++.++++.|..
T Consensus 437 KNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~--~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 437 KNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVA--IENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred cCCchhHHHHHHHHHHHHHHHhhhccCcceecCchh--hhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 999999999999999999999988644222111111 123579999999999999999 68888887754
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=4.6e-30 Score=278.15 Aligned_cols=215 Identities=35% Similarity=0.542 Sum_probs=182.7
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.....+.++|++|+|++++++.|.+.+.. +.++ ..++++||+||||||||++|++||.+++.+|+.+++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 33456789999999999999999987764 3332 34579999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204 283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI 362 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (577)
+.+.+.|..++.++.+|+.
T Consensus 124 ~~~~~~g~~~~~l~~~f~~------------------------------------------------------------- 142 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQ------------------------------------------------------------- 142 (495)
T ss_pred HHHHHhcccHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999988876
Q ss_pred ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHH
Q psy16204 363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEAS 440 (577)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~ 440 (577)
++.+.||||||||||.++..++.+ +.+...
T Consensus 143 ------------------------------------------------a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~ 174 (495)
T TIGR01241 143 ------------------------------------------------AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDER 174 (495)
T ss_pred ------------------------------------------------HHhcCCCEEEEechhhhhhccccCcCCccHHH
Confidence 777889999999999999887542 334566
Q ss_pred HHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHH
Q psy16204 441 RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFH 493 (577)
Q Consensus 441 ~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~ 493 (577)
.++++.||..||++... .+|+||+|||+|+.|+++++|+.+++. ++++.
T Consensus 175 ~~~~~~lL~~~d~~~~~----~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~ 250 (495)
T TIGR01241 175 EQTLNQLLVEMDGFGTN----TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLK 250 (495)
T ss_pred HHHHHHHHhhhccccCC----CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHH
Confidence 78999999999998753 569999999999999999998544432 34788
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 494 ~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ 556 (577)
.+|..+.||+++||.++|++|+..++++.. ..|+.+||.+|+.++.
T Consensus 251 ~la~~t~G~sgadl~~l~~eA~~~a~~~~~-----------------~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 251 AVARRTPGFSGADLANLLNEAALLAARKNK-----------------TEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHh
Confidence 999999999999999999999988877642 4799999999999874
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.8e-29 Score=259.45 Aligned_cols=216 Identities=38% Similarity=0.547 Sum_probs=181.7
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
..+...|.+.|++|+|++++++.|.+++.+|+.+++. ++++|||||||||||++|+++|++++.+|+.+.++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 3445678899999999999999999999999888754 47899999999999999999999999999999998
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++..+|.|+....++.+|..
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~------------------------------------------------------------ 210 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFEL------------------------------------------------------------ 210 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHH------------------------------------------------------------
Confidence 88888888888888877765
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~ 439 (577)
++...|+||||||||.++..+..+. .+..
T Consensus 211 -------------------------------------------------a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~ 241 (364)
T TIGR01242 211 -------------------------------------------------AKEKAPSIIFIDEIDAIAAKRTDSGTSGDRE 241 (364)
T ss_pred -------------------------------------------------HHhcCCcEEEhhhhhhhccccccCCCCccHH
Confidence 7777899999999999988764322 2334
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl 492 (577)
..+.+..||..++++... .+|.||+|||+++.|+++++++.+++ .++++
T Consensus 242 ~~~~l~~ll~~ld~~~~~----~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~ 317 (364)
T TIGR01242 242 VQRTLMQLLAELDGFDPR----GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL 317 (364)
T ss_pred HHHHHHHHHHHhhCCCCC----CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH
Confidence 456678888888886532 56999999999999999988744332 24689
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
..+|..++||+|+||.++|++|++.|+++.. ..|+.+||.+|+.++
T Consensus 318 ~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~-----------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 318 EAIAKMTEGASGADLKAICTEAGMFAIREER-----------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CccCHHHHHHHHHHh
Confidence 9999999999999999999999999998842 479999999999875
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2e-28 Score=267.32 Aligned_cols=171 Identities=30% Similarity=0.509 Sum_probs=145.0
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCe------
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTT------ 274 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~------ 274 (577)
...+...|.++|++|+|++.+++.|++++.+|+.+++.+ +++|||||||||||++|+++|++++.+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 345677899999999999999999999999998887653 689999999999999999999998644
Q ss_pred ----EEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCc
Q psy16204 275 ----FFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAP 350 (577)
Q Consensus 275 ----fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 350 (577)
|+.+.++++.++|.|+++..++.+|+.|..
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~---------------------------------------------- 283 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRARE---------------------------------------------- 283 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHH----------------------------------------------
Confidence 777888899999999999999999986321
Q ss_pred ccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccC
Q psy16204 351 TRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSM 430 (577)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~ 430 (577)
.+....||||||||||.++..
T Consensus 284 -----------------------------------------------------------~a~~g~p~IIfIDEiD~L~~~ 304 (512)
T TIGR03689 284 -----------------------------------------------------------KASDGRPVIVFFDEMDSIFRT 304 (512)
T ss_pred -----------------------------------------------------------HhhcCCCceEEEehhhhhhcc
Confidence 134457999999999999998
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc
Q psy16204 431 RGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV 488 (577)
Q Consensus 431 r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~ 488 (577)
|+.+..+...++++++||..||++... .+|+||+|||+++.|+++++|+.+++.
T Consensus 305 R~~~~s~d~e~~il~~LL~~LDgl~~~----~~ViVI~ATN~~d~LDpALlRpGRfD~ 358 (512)
T TIGR03689 305 RGSGVSSDVETTVVPQLLSELDGVESL----DNVIVIGASNREDMIDPAILRPGRLDV 358 (512)
T ss_pred cCCCccchHHHHHHHHHHHHhcccccC----CceEEEeccCChhhCCHhhcCccccce
Confidence 876555555678899999999998753 579999999999999999999666554
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=4.3e-28 Score=270.94 Aligned_cols=211 Identities=33% Similarity=0.506 Sum_probs=178.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
....++|+||+|++++++.|.+.+.. +..++ .++++||+||||||||++|+++|.+++.||+.++++++.+
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34568999999999999999998744 33333 3579999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204 286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV 365 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (577)
.+.|.....++.+|..
T Consensus 255 ~~~g~~~~~vr~lF~~---------------------------------------------------------------- 270 (638)
T CHL00176 255 MFVGVGAARVRDLFKK---------------------------------------------------------------- 270 (638)
T ss_pred HhhhhhHHHHHHHHHH----------------------------------------------------------------
Confidence 8888777777777766
Q ss_pred cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHH
Q psy16204 366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRF 443 (577)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v 443 (577)
++.+.||||||||||.++..|+. ++.+.....+
T Consensus 271 ---------------------------------------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 305 (638)
T CHL00176 271 ---------------------------------------------AKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQT 305 (638)
T ss_pred ---------------------------------------------HhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHH
Confidence 77889999999999999987753 2345566788
Q ss_pred HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHHHH
Q psy16204 444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHKIS 496 (577)
Q Consensus 444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~LA 496 (577)
++.||..||++..+ .+|+||+|||+++.|+++++|+.+++. ++++..+|
T Consensus 306 L~~LL~~~dg~~~~----~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA 381 (638)
T CHL00176 306 LNQLLTEMDGFKGN----KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA 381 (638)
T ss_pred HHHHHhhhccccCC----CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 99999999988743 679999999999999999998665442 34678999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
..+.||+|+||.++|++|+..+.|+.. ..||.+||++|+.++
T Consensus 382 ~~t~G~sgaDL~~lvneAal~a~r~~~-----------------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 382 RRTPGFSGADLANLLNEAAILTARRKK-----------------ATITMKEIDTAIDRV 423 (638)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCcCHHHHHHHHHHH
Confidence 999999999999999999999887742 469999999999987
No 30
>KOG0651|consensus
Probab=99.95 E-value=7.3e-28 Score=247.23 Aligned_cols=217 Identities=35% Similarity=0.506 Sum_probs=188.7
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
+...+...+++++.|+|.......+.+.+.+|+..|.++ +++|||||||+|||.+|+++|..+++.|+.+.+
T Consensus 120 ~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s 199 (388)
T KOG0651|consen 120 NMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS 199 (388)
T ss_pred HhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH
Confidence 344455567899999999999999999999999988765 689999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCC
Q psy16204 281 STLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP 360 (577)
Q Consensus 281 s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (577)
+.+.++|.||+..++|+.|..
T Consensus 200 s~lv~kyiGEsaRlIRemf~y----------------------------------------------------------- 220 (388)
T KOG0651|consen 200 SALVDKYIGESARLIRDMFRY----------------------------------------------------------- 220 (388)
T ss_pred hhhhhhhcccHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999987
Q ss_pred ccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhH
Q psy16204 361 SIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHE 438 (577)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~ 438 (577)
|+.+.||||||||||.++..+.+. ..+.
T Consensus 221 --------------------------------------------------A~~~~pciifmdeiDAigGRr~se~Ts~dr 250 (388)
T KOG0651|consen 221 --------------------------------------------------AREVIPCIIFMDEIDAIGGRRFSEGTSSDR 250 (388)
T ss_pred --------------------------------------------------HhhhCceEEeehhhhhhccEEeccccchhH
Confidence 888999999999999999887432 3455
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccC
Q psy16204 439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLD 491 (577)
Q Consensus 439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vd 491 (577)
...+.+-+||.+||++... ..|-+|+|||+|+.|+++|+|..+++. .+|
T Consensus 251 eiqrTLMeLlnqmdgfd~l----~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid 326 (388)
T KOG0651|consen 251 EIQRTLMELLNQMDGFDTL----HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID 326 (388)
T ss_pred HHHHHHHHHHHhhccchhc----ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc
Confidence 6777788888899988754 679999999999999999999876654 347
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
.+++.+..+||.|+|+.+.|++|.+.+++... ..+-.|||.+++.++
T Consensus 327 ~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-----------------~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 327 DEAILKLVDGFNGADLRNVCTEAGMFAIPEER-----------------DEVLHEDFMKLVRKQ 373 (388)
T ss_pred HHHHHHHHhccChHHHhhhcccccccccchhh-----------------HHHhHHHHHHHHHHH
Confidence 89999999999999999999999999988754 245678888888764
No 31
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.7e-28 Score=250.15 Aligned_cols=268 Identities=21% Similarity=0.234 Sum_probs=227.6
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCcc---------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPE---------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGE 290 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~---------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~ 290 (577)
.-|+||++||..+.-++....++.. .|++||+.||+|||||.+||.||+-.+.||+.|.+..+++ +|+|.
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 4579999999999999976444432 3589999999999999999999999999999999999998 99998
Q ss_pred h-HHHHHHHHHHhhhhhccccCcce--------------eeccccCCCCCc---cchhhHHHHHHHHHhhcccccCCccc
Q psy16204 291 S-EKLVRLLFEMVSFLVGLHSNKTF--------------YLVGVLNGEPTT---TFAYNKQILQMNRRVLKGALTTAPTR 352 (577)
Q Consensus 291 ~-e~~vr~lF~~a~~~~~~~~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~ 352 (577)
+ ++++|++.+.|.++++....+++ .||+...-+|.. ...+......|++.+..|.+...-.+
T Consensus 95 DVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIe 174 (444)
T COG1220 95 DVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIE 174 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEE
Confidence 8 89999999998888877776666 667765433322 33556778999999999999999999
Q ss_pred ccccCCCCcccccc-ccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCCe
Q psy16204 353 AENQESGPSIFSVM-VDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAPS 417 (577)
Q Consensus 353 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p~ 417 (577)
..+.+.++..+.++ ++|+...-..++.|+...+..+++++.... +.|++.+..+++..+.+++
T Consensus 175 iev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~G-- 252 (444)
T COG1220 175 IEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNG-- 252 (444)
T ss_pred EEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcC--
Confidence 99988766666666 789988888999999999999888887754 7899999999999999888
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEe----cCCchhhHHHhhcCcccccc
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAA----TNHPYQLLTLCLEGVVIDVN 489 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIat----TN~p~~L~~allrr~~i~~~ 489 (577)
||||||||+++...+.++.+.+.+.|+..||..++|...++ .+.+|+++||+ ...|.+|++.|+.||++..+
T Consensus 253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVE 332 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVE 332 (444)
T ss_pred eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEE
Confidence 99999999999977655558899999999999999976543 47789999999 67899999999999999654
Q ss_pred c
Q psy16204 490 L 490 (577)
Q Consensus 490 v 490 (577)
+
T Consensus 333 L 333 (444)
T COG1220 333 L 333 (444)
T ss_pred c
Confidence 4
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=8e-27 Score=261.03 Aligned_cols=213 Identities=32% Similarity=0.445 Sum_probs=181.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCC-------CccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTI-------MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR 288 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~-------~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~ 288 (577)
....|+++.|.+.+++.|.+.+.+... ....++++||+||||||||++|+++|.+++.+|+.++++++.+.+.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 346799999999999999998865322 1234578999999999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccccc
Q psy16204 289 GESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVD 368 (577)
Q Consensus 289 G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 368 (577)
|..+..++.+|..
T Consensus 227 g~~~~~~~~~f~~------------------------------------------------------------------- 239 (644)
T PRK10733 227 GVGASRVRDMFEQ------------------------------------------------------------------- 239 (644)
T ss_pred cccHHHHHHHHHH-------------------------------------------------------------------
Confidence 9888888888876
Q ss_pred CCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHHHH
Q psy16204 369 GLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAE 446 (577)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~~~ 446 (577)
++...||||||||||.++..|+. ++.+...+++++.
T Consensus 240 ------------------------------------------a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~ 277 (644)
T PRK10733 240 ------------------------------------------AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 277 (644)
T ss_pred ------------------------------------------HHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHH
Confidence 77788999999999999988854 3445667789999
Q ss_pred HHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHHHHHc
Q psy16204 447 LLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKISKML 499 (577)
Q Consensus 447 LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA~~t 499 (577)
||..||++..+ ..|+||||||+|+.|+++++|+.+++ .++|+..+|+.+
T Consensus 278 lL~~mdg~~~~----~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t 353 (644)
T PRK10733 278 MLVEMDGFEGN----EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT 353 (644)
T ss_pred HHHhhhcccCC----CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhC
Confidence 99999998753 67999999999999999998854443 345788999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 500 ~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
.||+|+||.++|++|+..++|+.. ..|+..||++|+.++.+.
T Consensus 354 ~G~sgadl~~l~~eAa~~a~r~~~-----------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 354 PGFSGADLANLVNEAALFAARGNK-----------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC-----------------CcccHHHHHHHHHHHhcc
Confidence 999999999999999999987742 469999999999987553
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=3.2e-27 Score=280.45 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=105.6
Q ss_pred hhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204 404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG 483 (577)
Q Consensus 404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr 483 (577)
++.+|.+|+..+||||||||||.|+... .....++.||..||+.... ....+|+||||||+|+.||+|++|+
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~d-------s~~ltL~qLLneLDg~~~~-~s~~~VIVIAATNRPD~LDPALLRP 1792 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNE-------SNYLSLGLLVNSLSRDCER-CSTRNILVIASTHIPQKVDPALIAP 1792 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCc-------cceehHHHHHHHhcccccc-CCCCCEEEEEeCCCcccCCHhHcCC
Confidence 7889999999999999999999998742 1112478999999986432 1346799999999999999999997
Q ss_pred cccccc------------------------------cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy16204 484 VVIDVN------------------------------LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 533 (577)
Q Consensus 484 ~~i~~~------------------------------vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~ 533 (577)
++++.. +|++.+|..|.||+|+||++||++|++.|+++..
T Consensus 1793 GRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~k---------- 1862 (2281)
T CHL00206 1793 NKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKK---------- 1862 (2281)
T ss_pred CCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------
Confidence 655431 3678999999999999999999999999999863
Q ss_pred hhccCCCCCCCHHHHHHHHHHhC
Q psy16204 534 IKQEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 534 ~~~~~~~~~It~~df~~Al~~~~ 556 (577)
..|+.+||+.|+.++.
T Consensus 1863 -------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1863 -------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred -------CccCHHHHHHHHHHHH
Confidence 3688999999998763
No 34
>KOG0733|consensus
Probab=99.94 E-value=1.1e-26 Score=253.46 Aligned_cols=253 Identities=23% Similarity=0.321 Sum_probs=210.4
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCC---
Q psy16204 320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSH--- 396 (577)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 396 (577)
.|.+..+++|.-+...++-+.+.- -.+++.+..+|..||.|.+.-+||||||+..+-+-..+..++|.....++..
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 355556667777777777776665 7889999999999999999999999999999888888888899888888744
Q ss_pred CCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh
Q psy16204 397 EGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL 476 (577)
Q Consensus 397 ~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L 476 (577)
-|++++.++++|.+|..+.||||||||||.|.++|.. ...++.+|++.+||..||++.......+.|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 7899999999999999999999999999999999976 456788999999999999998776666889999999999999
Q ss_pred HHHhhcCcccccc---------------------------cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCC--
Q psy16204 477 LTLCLEGVVIDVN---------------------------LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT-- 527 (577)
Q Consensus 477 ~~allrr~~i~~~---------------------------vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~-- 527 (577)
+++|.|.++|+.+ +|+..||+.|.||.|+||.+||.+|+..|++|.+....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 9999988777653 48999999999999999999999999999999875221
Q ss_pred ----h------------hH--Hh---------hh---h-------------ccCCCCCCCHHHHHHHHHHhCCC------
Q psy16204 528 ----P------------AQ--IK---------EI---K-------------QEDIDLPVTEKDFREAIARCRKS------ 558 (577)
Q Consensus 528 ----~------------~~--~~---------~~---~-------------~~~~~~~It~~df~~Al~~~~ps------ 558 (577)
+ ++ ++ .+ . ++...+.|..+||++|+..++||
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 0 01 11 00 0 11124569999999999999865
Q ss_pred -----CCHHHHHHHHHHHHhh
Q psy16204 559 -----VTAHDLSKYDSWMNEF 574 (577)
Q Consensus 559 -----v~~~~~~~~~~~~~~~ 574 (577)
|+++|+..+++.+.++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL 523 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLEL 523 (802)
T ss_pred eecCCCChhhcccHHHHHHHH
Confidence 7888888888777664
No 35
>KOG0732|consensus
Probab=99.94 E-value=8.4e-27 Score=267.43 Aligned_cols=237 Identities=32% Similarity=0.497 Sum_probs=198.5
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhC-----CeEE
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECG-----TTFF 276 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv 276 (577)
+.+.....+.|++|+|++..++.|++.+..|+.+|++| +||||+||||||||+.|+++|..|. ..|+
T Consensus 254 dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisff 333 (1080)
T KOG0732|consen 254 DPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFF 333 (1080)
T ss_pred CchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchh
Confidence 44555667899999999999999999999999999876 6899999999999999999999995 6788
Q ss_pred EEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204 277 NVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ 356 (577)
Q Consensus 277 ~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (577)
.-.+++..++|+|+.|..++.+|+.
T Consensus 334 mrkgaD~lskwvgEaERqlrllFee------------------------------------------------------- 358 (1080)
T KOG0732|consen 334 MRKGADCLSKWVGEAERQLRLLFEE------------------------------------------------------- 358 (1080)
T ss_pred hhcCchhhccccCcHHHHHHHHHHH-------------------------------------------------------
Confidence 8899999999999999999999987
Q ss_pred CCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh
Q psy16204 357 ESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE 436 (577)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~ 436 (577)
|++..|+|||+||||.|++.|.+-.
T Consensus 359 ------------------------------------------------------A~k~qPSIIffdeIdGlapvrSskq- 383 (1080)
T KOG0732|consen 359 ------------------------------------------------------AQKTQPSIIFFDEIDGLAPVRSSKQ- 383 (1080)
T ss_pred ------------------------------------------------------HhccCceEEeccccccccccccchH-
Confidence 8999999999999999999985433
Q ss_pred hHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc--------------------------
Q psy16204 437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL-------------------------- 490 (577)
Q Consensus 437 ~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v-------------------------- 490 (577)
......++..||..|||+.+. ..|+||+|||+|+.+++++.|+++|+..+
T Consensus 384 Eqih~SIvSTLLaLmdGldsR----gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 384 EQIHASIVSTLLALMDGLDSR----GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred HHhhhhHHHHHHHhccCCCCC----CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 344567899999999999964 77999999999999999999999887654
Q ss_pred --CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCH
Q psy16204 491 --DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA 561 (577)
Q Consensus 491 --dl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~ 561 (577)
-+..||+.+.||.|+||+.||.+|++.++++....+-... ..+........|..+||..|+.+..|+-..
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~-~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSS-DKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeeccc-ccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 2479999999999999999999999999998653211100 000001112348889999999998877554
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=5e-25 Score=232.09 Aligned_cols=169 Identities=17% Similarity=0.139 Sum_probs=129.2
Q ss_pred CCCcccc-cCcHHHHHHHHHHHHC------cCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204 217 NVQWNKV-AGLTEAKAILQEAMVL------PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289 (577)
Q Consensus 217 ~v~~~dI-iG~~~ak~~L~e~l~~------pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G 289 (577)
..+++++ +|..-++.-+.+++.. .+..-+++.++|||||||||||++|++||+++|++|+.++++++.++|+|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 3466777 5555444444433311 11223567899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204 290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG 369 (577)
Q Consensus 290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (577)
++|++||++|..|..+
T Consensus 191 EsEk~IR~~F~~A~~~---------------------------------------------------------------- 206 (413)
T PLN00020 191 EPGKLIRQRYREAADI---------------------------------------------------------------- 206 (413)
T ss_pred cHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 9999999999874311
Q ss_pred CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHH-HhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHH
Q psy16204 370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQA-RCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL 448 (577)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a-~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL 448 (577)
+ .+.+||||||||||++++.++++......+.+..+||
T Consensus 207 -----------------------------------------a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLL 245 (413)
T PLN00020 207 -----------------------------------------IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLM 245 (413)
T ss_pred -----------------------------------------hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHH
Confidence 2 3457999999999999999875443444455568999
Q ss_pred HHHhCCCC--------CcCCCceEEEEEecCCchhhHHHhhcCccccccc
Q psy16204 449 IQMDGLNS--------SLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL 490 (577)
Q Consensus 449 ~~mD~~~~--------~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v 490 (577)
.+||+... .......|+||+|||+|+.|+++|+|..+++..+
T Consensus 246 nl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i 295 (413)
T PLN00020 246 NIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 295 (413)
T ss_pred HHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee
Confidence 99997421 1123567999999999999999999987776533
No 37
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.89 E-value=1.9e-22 Score=215.67 Aligned_cols=268 Identities=19% Similarity=0.209 Sum_probs=195.5
Q ss_pred ccccCcHHHHHHHHHHHHCcCCC---------ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cccc-
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIM---------PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG- 289 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~---------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G- 289 (577)
+-|+||+++|..|..++....++ ...+++|||+||||||||++|++||+.++.+|+.+++..+++ +|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 56899999999999988754222 223479999999999999999999999999999999999885 8999
Q ss_pred chHHHHHHHHHHhhhhhcc---ccCc---------ce--eecccc-CC--CCCccchhhHHHHHHHHHhhcccccCCccc
Q psy16204 290 ESEKLVRLLFEMVSFLVGL---HSNK---------TF--YLVGVL-NG--EPTTTFAYNKQILQMNRRVLKGALTTAPTR 352 (577)
Q Consensus 290 ~~e~~vr~lF~~a~~~~~~---~~~~---------~~--~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 352 (577)
+.+..++.+|+.|...... ++.+ .+ .|++.. +. ..............+.+.+..|.+.....+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 5689999999987332211 0000 00 233211 11 000011122457888999999999887777
Q ss_pred ccccCCCCcccccc-ccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCCe
Q psy16204 353 AENQESGPSIFSVM-VDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAPS 417 (577)
Q Consensus 353 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p~ 417 (577)
....+.+...+.++ ++|++.....+..|+...|+..+++..... +.|++.+.++++..+..++
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~G-- 249 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSG-- 249 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC--
Confidence 77665544434433 344444444677888877776666655433 6789999999988888777
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCC----cCCCceEEEEEec----CCchhhHHHhhcCcccccc
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS----LYEDKIIMILAAT----NHPYQLLTLCLEGVVIDVN 489 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~----~~~~~~VlIIatT----N~p~~L~~allrr~~i~~~ 489 (577)
||||||||+|+...++.+.+.+...|++.||..|+|...+ ..+..||++||+- ..|.+|++.|..|+++...
T Consensus 250 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~ 329 (441)
T TIGR00390 250 IIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVE 329 (441)
T ss_pred EEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEE
Confidence 9999999999987755666788889999999999985433 2466899999994 5788899999999998544
Q ss_pred c
Q psy16204 490 L 490 (577)
Q Consensus 490 v 490 (577)
+
T Consensus 330 L 330 (441)
T TIGR00390 330 L 330 (441)
T ss_pred C
Confidence 3
No 38
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.88 E-value=3e-22 Score=214.30 Aligned_cols=267 Identities=19% Similarity=0.228 Sum_probs=191.8
Q ss_pred ccccCcHHHHHHHHHHHHCcCCC---------ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cccc-
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIM---------PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG- 289 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~---------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G- 289 (577)
..|+||+++|..|..++....++ ...++++||+||||||||++|++||+.++.+|+.++++.+++ +|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 45999999999999998652211 122478999999999999999999999999999999999986 7999
Q ss_pred chHHHHHHHHHHhhhhhccccCcce--------------eeccccCCC---CCccchhhHHHHHHHHHhhcccccCCccc
Q psy16204 290 ESEKLVRLLFEMVSFLVGLHSNKTF--------------YLVGVLNGE---PTTTFAYNKQILQMNRRVLKGALTTAPTR 352 (577)
Q Consensus 290 ~~e~~vr~lF~~a~~~~~~~~~~~~--------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 352 (577)
..+..++.+|+.|...........+ .+++..... .............+.+.+..|.+.....+
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 4589999999987433322111111 222211000 01111234558889999999998887777
Q ss_pred ccccCCCCcccc-ccccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCCe
Q psy16204 353 AENQESGPSIFS-VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAPS 417 (577)
Q Consensus 353 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p~ 417 (577)
....+..+ .+. +.++|++.....+..|+...|+..+++..... +.|++.+.++++..+..++
T Consensus 175 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G-- 251 (443)
T PRK05201 175 IEVAEAAP-MMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG-- 251 (443)
T ss_pred EEecCCCC-cccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC--
Confidence 66655322 122 22345544445677777776665555544432 6689999999988887777
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEe----cCCchhhHHHhhcCcccccc
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAA----TNHPYQLLTLCLEGVVIDVN 489 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIat----TN~p~~L~~allrr~~i~~~ 489 (577)
||||||||+|+...++.+.+.+.+.|++.||..|+|...+. .+.+||++||+ ...|.+|++.|..|+++...
T Consensus 252 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~ 331 (443)
T PRK05201 252 IVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVE 331 (443)
T ss_pred EEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEE
Confidence 99999999999876555567888899999999999855432 46689999999 45788899999999998544
Q ss_pred c
Q psy16204 490 L 490 (577)
Q Consensus 490 v 490 (577)
+
T Consensus 332 L 332 (443)
T PRK05201 332 L 332 (443)
T ss_pred C
Confidence 3
No 39
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7e-22 Score=223.30 Aligned_cols=238 Identities=21% Similarity=0.193 Sum_probs=187.5
Q ss_pred CChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCcccc-ceeEEecCCCCC
Q psy16204 184 VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFF-KEALERHSHGTG 259 (577)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~-k~ILL~GPpGtG 259 (577)
|..+++.+.+...+|+|..-....+...+.+.+...-+.|+||++|...|.+++.. .+..+..| .++||.||+|||
T Consensus 454 v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVG 533 (786)
T COG0542 454 VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVG 533 (786)
T ss_pred cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCccc
Confidence 77888999999999999998877888888888888999999999999999999954 66666666 468999999999
Q ss_pred hHHHHHHHHHHhC---CeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHH
Q psy16204 260 KTMLAKAVATECG---TTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQ 336 (577)
Q Consensus 260 KT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (577)
||.|||+||..+. ..++++++|++++++. |+.++|+|+||+||
T Consensus 534 KTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs----------------------------VSrLIGaPPGYVGy------ 579 (786)
T COG0542 534 KTELAKALAEALFGDEQALIRIDMSEYMEKHS----------------------------VSRLIGAPPGYVGY------ 579 (786)
T ss_pred HHHHHHHHHHHhcCCCccceeechHHHHHHHH----------------------------HHHHhCCCCCCcee------
Confidence 9999999999997 7999999999987643 67889999999999
Q ss_pred HHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCC
Q psy16204 337 MNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP 416 (577)
Q Consensus 337 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p 416 (577)
+.++.++++ .+.+++
T Consensus 580 --------------------------------------------------------------eeGG~LTEa---VRr~Py 594 (786)
T COG0542 580 --------------------------------------------------------------EEGGQLTEA---VRRKPY 594 (786)
T ss_pred --------------------------------------------------------------ccccchhHh---hhcCCC
Confidence 456667777 788888
Q ss_pred eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC-----CCCCcCCCceEEEEEecCCchhhHHHhhcCcccccccC
Q psy16204 417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLD 491 (577)
Q Consensus 417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~-----~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~vd 491 (577)
|||+||||++.++ +|++.|||.||. ..+...+.+|++||+|||--.....
T Consensus 595 SViLlDEIEKAHp------------dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~------------- 649 (786)
T COG0542 595 SVILLDEIEKAHP------------DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEIL------------- 649 (786)
T ss_pred eEEEechhhhcCH------------HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHH-------------
Confidence 9999999999998 899999999984 3445578899999999996443322
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554 (577)
Q Consensus 492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~ 554 (577)
+.+.+ .......-+++..+..+++.. .|+.+.++.......+++.+++.+-+..
T Consensus 650 -----~~~~~-~~~~~~~~~~~~v~~~l~~~F---~PEFLNRid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 650 -----RDADG-DDFADKEALKEAVMEELKKHF---RPEFLNRIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred -----hhccc-cccchhhhHHHHHHHHHHhhC---CHHHHhhcccEEeccCCCHHHHHHHHHH
Confidence 22111 111223344555556666654 5777777776666677777777766554
No 40
>KOG2004|consensus
Probab=99.86 E-value=7e-22 Score=218.96 Aligned_cols=259 Identities=18% Similarity=0.131 Sum_probs=195.1
Q ss_pred cCCCccccchhcccccccccchhhhccCCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHH
Q psy16204 155 LGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQ 234 (577)
Q Consensus 155 ~~~~p~~~~lI~d~~se~~i~~ea~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~ 234 (577)
.+....+.+++.++..............+++++.+++...-+||-. +.++.-+.....+.-+|..|++++|+++.
T Consensus 350 ~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~-----S~En~dl~~Ak~iLdeDHYgm~dVKeRIL 424 (906)
T KOG2004|consen 350 LKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKS-----STENLDLARAKEILDEDHYGMEDVKERIL 424 (906)
T ss_pred ccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCC-----ChhhhhHHHHHHhhcccccchHHHHHHHH
Confidence 5666677778877777777777777778899999999999999843 33344455556678899999999999999
Q ss_pred HHHHCcCCCcccc-ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcc
Q psy16204 235 EAMVLPTIMPEFF-KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKT 313 (577)
Q Consensus 235 e~l~~pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~ 313 (577)
+++.....++..- +-++|+||||||||++||.||..++..||+++...+.+-
T Consensus 425 EfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv--------------------------- 477 (906)
T KOG2004|consen 425 EFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV--------------------------- 477 (906)
T ss_pred HHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH---------------------------
Confidence 9997765554443 568999999999999999999999999999999877541
Q ss_pred eeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcc
Q psy16204 314 FYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC 393 (577)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (577)
.|+++|+.+|+|.++|+-...++.+-+.+
T Consensus 478 ------------------------------------------AeIkGHRRTYVGAMPGkiIq~LK~v~t~N--------- 506 (906)
T KOG2004|consen 478 ------------------------------------------AEIKGHRRTYVGAMPGKIIQCLKKVKTEN--------- 506 (906)
T ss_pred ------------------------------------------HhhcccceeeeccCChHHHHHHHhhCCCC---------
Confidence 24678899999999998888775555433
Q ss_pred cCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc---------CCCceE
Q psy16204 394 QSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKII 464 (577)
Q Consensus 394 ~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~---------~~~~~V 464 (577)
.+++|||||++++.-.+++ .++||+.+|.-++.. ++-..|
T Consensus 507 -----------------------PliLiDEvDKlG~g~qGDP--------asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 507 -----------------------PLILIDEVDKLGSGHQGDP--------ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred -----------------------ceEEeehhhhhCCCCCCCh--------HHHHHHhcChhhccchhhhccccccchhhe
Confidence 4999999999995433333 568999998644432 355779
Q ss_pred EEEEecCCchhhHHHhhcCccccc---cc----------CHHHHHHHcCCCCHH-----------HHHHHHHHHHHHHHH
Q psy16204 465 MILAATNHPYQLLTLCLEGVVIDV---NL----------DFHKISKMLEGYTGS-----------DIANLARDAAMMSIR 520 (577)
Q Consensus 465 lIIatTN~p~~L~~allrr~~i~~---~v----------dl~~LA~~t~G~sgs-----------DI~~l~~~Aa~~air 520 (577)
++|||+|..+.|.++|++|+.+.. .+ .|-.-+..-.|++.. =|+..|++|..+.+.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLq 635 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQ 635 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999997632 11 111122223455543 278889999999998
Q ss_pred HHHhcCC
Q psy16204 521 RKIMGQT 527 (577)
Q Consensus 521 r~~~~~~ 527 (577)
+++....
T Consensus 636 k~iekI~ 642 (906)
T KOG2004|consen 636 KQIEKIC 642 (906)
T ss_pred HHHHHHH
Confidence 8875543
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=217.48 Aligned_cols=258 Identities=19% Similarity=0.189 Sum_probs=182.9
Q ss_pred CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-ceeEEecCCCCChH
Q psy16204 183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-KEALERHSHGTGKT 261 (577)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-k~ILL~GPpGtGKT 261 (577)
.+++..+++.+.-+|+.... ++.-+.+...+.-.|..|++++|+++.+++....+.++.. .-+||+||||||||
T Consensus 290 ~ViRnYlDwll~lPW~~~sk-----~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKT 364 (782)
T COG0466 290 TVIRNYLDWLLDLPWGKRSK-----DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKT 364 (782)
T ss_pred HHHHHHHHHHHhCCCccccc-----hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCch
Confidence 45566677777767764422 2222334445677899999999999999997766555544 34789999999999
Q ss_pred HHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHh
Q psy16204 262 MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRV 341 (577)
Q Consensus 262 ~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (577)
+|++.||+.++..|++++...+.+ |.
T Consensus 365 SLgkSIA~al~RkfvR~sLGGvrD------EA------------------------------------------------ 390 (782)
T COG0466 365 SLGKSIAKALGRKFVRISLGGVRD------EA------------------------------------------------ 390 (782)
T ss_pred hHHHHHHHHhCCCEEEEecCcccc------HH------------------------------------------------
Confidence 999999999999999999987633 22
Q ss_pred hcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEE
Q psy16204 342 LKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFI 421 (577)
Q Consensus 342 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfI 421 (577)
|..+|+.+|+|.++|+-.++|+.+-+. + .|++|
T Consensus 391 ---------------EIRGHRRTYIGamPGrIiQ~mkka~~~-------------------------------N-Pv~LL 423 (782)
T COG0466 391 ---------------EIRGHRRTYIGAMPGKIIQGMKKAGVK-------------------------------N-PVFLL 423 (782)
T ss_pred ---------------HhccccccccccCChHHHHHHHHhCCc-------------------------------C-CeEEe
Confidence 345788999999999998887544432 2 49999
Q ss_pred ccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc---------CCCceEEEEEecCCchhhHHHhhcCccccc---c
Q psy16204 422 DEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKIIMILAATNHPYQLLTLCLEGVVIDV---N 489 (577)
Q Consensus 422 DEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~---------~~~~~VlIIatTN~p~~L~~allrr~~i~~---~ 489 (577)
||||++.+.-.+++ .++||+.+|.-+++. ++-.+|++|||+|..+.|+.+|++|+.+-. .
T Consensus 424 DEIDKm~ss~rGDP--------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgY 495 (782)
T COG0466 424 DEIDKMGSSFRGDP--------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGY 495 (782)
T ss_pred echhhccCCCCCCh--------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCC
Confidence 99999998655544 578999999655443 456789999999999999999999997632 1
Q ss_pred cCH--HHHHHH--------cCCCCH-------HH----HHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCC--CCCCHH
Q psy16204 490 LDF--HKISKM--------LEGYTG-------SD----IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID--LPVTEK 546 (577)
Q Consensus 490 vdl--~~LA~~--------t~G~sg-------sD----I~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~--~~It~~ 546 (577)
.+. -.||+. -.|+.. +- |....++|..+.+.|.+.......+.++-..... ..|+..
T Consensus 496 t~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~ 575 (782)
T COG0466 496 TEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEK 575 (782)
T ss_pred ChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHH
Confidence 122 233332 134432 22 5777888999999998865554444444333322 246666
Q ss_pred HHHHHHHH
Q psy16204 547 DFREAIAR 554 (577)
Q Consensus 547 df~~Al~~ 554 (577)
++.+.|-.
T Consensus 576 ~l~~yLG~ 583 (782)
T COG0466 576 NLKKYLGV 583 (782)
T ss_pred HHHHHhCC
Confidence 77666653
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=1.2e-19 Score=158.68 Aligned_cols=124 Identities=33% Similarity=0.471 Sum_probs=108.0
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccch
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFA 329 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (577)
|||+||||||||++|+.+|+.++.+|+++++.++.+.+.+..+..++.+|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~---------------------------- 52 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKK---------------------------- 52 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHH----------------------------
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccc----------------------------
Confidence 6999999999999999999999999999999999988889999999888876
Q ss_pred hhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHH
Q psy16204 330 YNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLF 409 (577)
Q Consensus 330 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 409 (577)
T Consensus 53 -------------------------------------------------------------------------------- 52 (132)
T PF00004_consen 53 -------------------------------------------------------------------------------- 52 (132)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcC-CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh-cCccc
Q psy16204 410 QARCYA-PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL-EGVVI 486 (577)
Q Consensus 410 ~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all-rr~~i 486 (577)
+.... |+||||||+|.+.... ..........+++.|+..++..... ..+++||+|||.++.|++.+. ++|..
T Consensus 53 -~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~---~~~~~vI~ttn~~~~i~~~l~~~rf~~ 126 (132)
T PF00004_consen 53 -AKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSK---NSRVIVIATTNSPDKIDPALLRSRFDR 126 (132)
T ss_dssp -HHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTT---SSSEEEEEEESSGGGSCHHHHSTTSEE
T ss_pred -ccccccceeeeeccchhccccc-ccccccccccccceeeecccccccc---cccceeEEeeCChhhCCHhHHhCCCcE
Confidence 55555 8999999999999977 4445667778999999999987753 356999999999999999999 55543
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=1.3e-17 Score=189.48 Aligned_cols=183 Identities=20% Similarity=0.189 Sum_probs=138.6
Q ss_pred CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCccccc-eeEEecCCC
Q psy16204 182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFFK-EALERHSHG 257 (577)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~k-~ILL~GPpG 257 (577)
..+..+++...+...+|+|...+...+...+.+......+.|+||+.+++.|.+++.. .+..+..+. .+||+||||
T Consensus 415 ~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~G 494 (731)
T TIGR02639 415 ANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTG 494 (731)
T ss_pred cccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCC
Confidence 4577899999999999999887776666777777777889999999999999999864 333444454 589999999
Q ss_pred CChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHH
Q psy16204 258 TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM 337 (577)
Q Consensus 258 tGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (577)
||||++|++||+.++.+++.++++++.+++. +..+.+++++|+|+
T Consensus 495 vGKT~lA~~la~~l~~~~~~~d~se~~~~~~----------------------------~~~lig~~~gyvg~------- 539 (731)
T TIGR02639 495 VGKTELAKQLAEALGVHLERFDMSEYMEKHT----------------------------VSRLIGAPPGYVGF------- 539 (731)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCchhhhccc----------------------------HHHHhcCCCCCccc-------
Confidence 9999999999999999999999998765421 12334556666665
Q ss_pred HHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCe
Q psy16204 338 NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS 417 (577)
Q Consensus 338 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~ 417 (577)
+.++.+.+. ++.+..+
T Consensus 540 -------------------------------------------------------------~~~~~l~~~---~~~~p~~ 555 (731)
T TIGR02639 540 -------------------------------------------------------------EQGGLLTEA---VRKHPHC 555 (731)
T ss_pred -------------------------------------------------------------chhhHHHHH---HHhCCCe
Confidence 122223333 4556679
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCchh
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPYQ 475 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p~~ 475 (577)
||||||||++++ .+++.||+.||.- .+...+..+++||+|||....
T Consensus 556 VvllDEieka~~------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~ 606 (731)
T TIGR02639 556 VLLLDEIEKAHP------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS 606 (731)
T ss_pred EEEEechhhcCH------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence 999999999976 6799999999852 122345678999999997543
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=9.9e-18 Score=191.12 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=136.1
Q ss_pred CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCcccc-ceeEEecCCC
Q psy16204 182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFF-KEALERHSHG 257 (577)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~-k~ILL~GPpG 257 (577)
..+...++.+.+...+|+|...+...+...+.+.....-..|+||+++++.|.+++.. .+..+..+ .++||+||||
T Consensus 419 ~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~G 498 (758)
T PRK11034 419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTG 498 (758)
T ss_pred cccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCC
Confidence 3467788999999999999998877777777777777888999999999999999864 23333334 4699999999
Q ss_pred CChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHH
Q psy16204 258 TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM 337 (577)
Q Consensus 258 tGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (577)
||||++|++||+.++.+|+.++|+++.+.+ .+. .+.|.+++|.|+
T Consensus 499 vGKT~lAk~LA~~l~~~~i~id~se~~~~~------~~~----------------------~LiG~~~gyvg~------- 543 (758)
T PRK11034 499 VGKTEVTVQLSKALGIELLRFDMSEYMERH------TVS----------------------RLIGAPPGYVGF------- 543 (758)
T ss_pred CCHHHHHHHHHHHhCCCcEEeechhhcccc------cHH----------------------HHcCCCCCcccc-------
Confidence 999999999999999999999998875431 112 223445555554
Q ss_pred HHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCe
Q psy16204 338 NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS 417 (577)
Q Consensus 338 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~ 417 (577)
+.++.+.++ .+.+..+
T Consensus 544 -------------------------------------------------------------~~~g~L~~~---v~~~p~s 559 (758)
T PRK11034 544 -------------------------------------------------------------DQGGLLTDA---VIKHPHA 559 (758)
T ss_pred -------------------------------------------------------------cccchHHHH---HHhCCCc
Confidence 122233333 4456679
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCc
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHP 473 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p 473 (577)
||||||||++++ .+++.||+.||.- .+...+..+++||+|||.-
T Consensus 560 VlllDEieka~~------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g 608 (758)
T PRK11034 560 VLLLDEIEKAHP------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_pred EEEeccHhhhhH------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence 999999999976 6899999999842 1223455789999999944
No 45
>KOG0730|consensus
Probab=99.76 E-value=4.7e-18 Score=187.89 Aligned_cols=219 Identities=24% Similarity=0.296 Sum_probs=178.8
Q ss_pred CccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcch
Q psy16204 325 TTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSG 401 (577)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~ 401 (577)
....|...+...+.+.+..+-..++-+...+.-+|.+++.|+++|+|++-...+=+......+..-.+++ ++.|+.+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 5667778888899999999999999999999999999999999999999885544444444444444443 5589999
Q ss_pred hhhhhhHHHHHhcC-CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 402 RINKNSLFQARCYA-PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 402 ~~~~~~~~~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
..++.+|.++.+++ |++|||||+|.+|++|..... ..+++..+|+..||+.... .+++||+|||+|+.|++++
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~----~~vivl~atnrp~sld~al 337 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPD----AKVIVLAATNRPDSLDPAL 337 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCc----CcEEEEEecCCccccChhh
Confidence 99999999999999 999999999999999865443 6789999999999999843 6799999999999999999
Q ss_pred hcCccccc---------------------------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy16204 481 LEGVVIDV---------------------------NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 533 (577)
Q Consensus 481 lrr~~i~~---------------------------~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~ 533 (577)
.| ++++. ++++..+|..|+||+|+|+..+|++|++.++|+
T Consensus 338 RR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------ 404 (693)
T KOG0730|consen 338 RR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------ 404 (693)
T ss_pred hc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------
Confidence 98 44433 237899999999999999999999999999988
Q ss_pred hhccCCCCCCCHHHHHHHHHHhC-----------CCCCHHHHHHHHHHHH
Q psy16204 534 IKQEDIDLPVTEKDFREAIARCR-----------KSVTAHDLSKYDSWMN 572 (577)
Q Consensus 534 ~~~~~~~~~It~~df~~Al~~~~-----------psv~~~~~~~~~~~~~ 572 (577)
++++|+.|+..++ |.|+++|+..+++...
T Consensus 405 ----------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~ 444 (693)
T KOG0730|consen 405 ----------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKR 444 (693)
T ss_pred ----------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHH
Confidence 3455555555555 4467777766665544
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=1.6e-17 Score=165.73 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G 289 (577)
.......+..+++++||+..+..+.-++..-..+.+.+.++|||||||+|||+||+.||++++.+|..+++..+...
T Consensus 13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~--- 89 (233)
T PF05496_consen 13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA--- 89 (233)
T ss_dssp -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC---
T ss_pred hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH---
Confidence 44456777899999999999999998886655566677899999999999999999999999999999888643110
Q ss_pred chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204 290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG 369 (577)
Q Consensus 290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (577)
.-+..++..
T Consensus 90 ---~dl~~il~~-------------------------------------------------------------------- 98 (233)
T PF05496_consen 90 ---GDLAAILTN-------------------------------------------------------------------- 98 (233)
T ss_dssp ---HHHHHHHHT--------------------------------------------------------------------
T ss_pred ---HHHHHHHHh--------------------------------------------------------------------
Confidence 111111110
Q ss_pred CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204 370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI 449 (577)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~ 449 (577)
. ....|||||||+.+.. .++..|+.
T Consensus 99 -----------------------------------------l--~~~~ILFIDEIHRlnk------------~~qe~Llp 123 (233)
T PF05496_consen 99 -----------------------------------------L--KEGDILFIDEIHRLNK------------AQQEILLP 123 (233)
T ss_dssp ---------------------------------------------TT-EEEECTCCC--H------------HHHHHHHH
T ss_pred -----------------------------------------c--CCCcEEEEechhhccH------------HHHHHHHH
Confidence 1 2346999999999976 56788999
Q ss_pred HHhCCCCCc------------CCCceEEEEEecCCchhhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHH
Q psy16204 450 QMDGLNSSL------------YEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA 514 (577)
Q Consensus 450 ~mD~~~~~~------------~~~~~VlIIatTN~p~~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~A 514 (577)
.|+...-.. .+-.+.-+|+||++...|...+..||.+...+++ |+..||..++..+
T Consensus 124 amEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~---------Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 124 AMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF---------YSEEELAKIVKRS 191 (233)
T ss_dssp HHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE-------------THHHHHHHHHHC
T ss_pred HhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc---------CCHHHHHHHHHHH
Confidence 998633110 1224578999999999999999999998766666 8888888887654
No 47
>KOG0744|consensus
Probab=99.72 E-value=1.7e-17 Score=172.08 Aligned_cols=164 Identities=28% Similarity=0.310 Sum_probs=127.8
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccc------c---ceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEec
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEF------F---KEALERHSHGTGKTMLAKAVATECG---------TTFFNVSS 280 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~------~---k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~ 280 (577)
.|+.++=-...|+.|..|+...+...+. . +-||++||||||||+|+|+||+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 6888888889999999887554333221 1 3489999999999999999999985 47899999
Q ss_pred CccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCC
Q psy16204 281 STLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP 360 (577)
Q Consensus 281 s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (577)
..+.+||++++.++|..+|+....+. .
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv-----------------------------------~------------------ 246 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELV-----------------------------------E------------------ 246 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHH-----------------------------------h------------------
Confidence 99999999999999999998722111 0
Q ss_pred ccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC---CCChh
Q psy16204 361 SIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG---SDSEH 437 (577)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~---~~~~~ 437 (577)
....--.++|||++.|+..|. +..+.
T Consensus 247 ---------------------------------------------------d~~~lVfvLIDEVESLa~aR~s~~S~~Ep 275 (423)
T KOG0744|consen 247 ---------------------------------------------------DRGNLVFVLIDEVESLAAARTSASSRNEP 275 (423)
T ss_pred ---------------------------------------------------CCCcEEEEEeHHHHHHHHHHHhhhcCCCC
Confidence 001113678999999998873 23344
Q ss_pred HHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc
Q psy16204 438 EASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL 490 (577)
Q Consensus 438 ~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v 490 (577)
...-|++|+||.+||.+... .||+|+||+|-.+.||.++.+|..+...|
T Consensus 276 sDaIRvVNalLTQlDrlK~~----~NvliL~TSNl~~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 276 SDAIRVVNALLTQLDRLKRY----PNVLILATSNLTDSIDVAFVDRADIVFYV 324 (423)
T ss_pred chHHHHHHHHHHHHHHhccC----CCEEEEeccchHHHHHHHhhhHhhheeec
Confidence 44558999999999999854 78999999999999999999987654433
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=1e-16 Score=184.98 Aligned_cols=183 Identities=21% Similarity=0.176 Sum_probs=142.7
Q ss_pred CChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCccccce-eEEecCCCCC
Q psy16204 184 VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFFKE-ALERHSHGTG 259 (577)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~k~-ILL~GPpGtG 259 (577)
+..+++.+.++..+|+|...+...+...+.+.....-+.|+||+.+++.|.+++... +..+..+.+ +||+||||||
T Consensus 529 v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvG 608 (852)
T TIGR03345 529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVG 608 (852)
T ss_pred ecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCC
Confidence 678899999999999999988887777777777788899999999999999998653 444555655 8999999999
Q ss_pred hHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHH
Q psy16204 260 KTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQ 336 (577)
Q Consensus 260 KT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (577)
||++|++||+.+ ...|+.++++++.+.+. +..+.|.+++|+|+
T Consensus 609 KT~lA~~La~~l~~~~~~~~~~dmse~~~~~~----------------------------~~~l~g~~~gyvg~------ 654 (852)
T TIGR03345 609 KTETALALAELLYGGEQNLITINMSEFQEAHT----------------------------VSRLKGSPPGYVGY------ 654 (852)
T ss_pred HHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh----------------------------hccccCCCCCcccc------
Confidence 999999999998 45889999987754311 34566778888777
Q ss_pred HHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCC
Q psy16204 337 MNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP 416 (577)
Q Consensus 337 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p 416 (577)
+.++.+.+. .+.+.+
T Consensus 655 --------------------------------------------------------------~~~g~L~~~---v~~~p~ 669 (852)
T TIGR03345 655 --------------------------------------------------------------GEGGVLTEA---VRRKPY 669 (852)
T ss_pred --------------------------------------------------------------cccchHHHH---HHhCCC
Confidence 122333333 455777
Q ss_pred eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCchhhH
Q psy16204 417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPYQLL 477 (577)
Q Consensus 417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p~~L~ 477 (577)
+||+|||||++++ .+++.|++.+|.- .+...+..+.+||+|||.....+
T Consensus 670 svvllDEieka~~------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~ 723 (852)
T TIGR03345 670 SVVLLDEVEKAHP------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLI 723 (852)
T ss_pred cEEEEechhhcCH------------HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHH
Confidence 9999999999876 6788999999842 22334567899999999876644
No 49
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=8.9e-17 Score=183.79 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=109.2
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccc-cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHH
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEF-FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRL 297 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~-~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~ 297 (577)
.-++++|++++++.|.+++..+...... ...+||+||||||||++|++||++++.+|+.++++.+... .+
T Consensus 318 l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~---------~~ 388 (775)
T TIGR00763 318 LDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDE---------AE 388 (775)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccH---------HH
Confidence 4457999999999999988765433322 2369999999999999999999999999999998654210 00
Q ss_pred HHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204 298 LFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM 377 (577)
Q Consensus 298 lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (577)
+.. .
T Consensus 389 i~g----------------------~------------------------------------------------------ 392 (775)
T TIGR00763 389 IRG----------------------H------------------------------------------------------ 392 (775)
T ss_pred HcC----------------------C------------------------------------------------------
Confidence 000 0
Q ss_pred hhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCC
Q psy16204 378 VAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457 (577)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~ 457 (577)
...++|.+.+.+.+.+..+....| ||||||||++++...++ ..+.||+.||.....
T Consensus 393 ---------------~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~ 448 (775)
T TIGR00763 393 ---------------RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNN 448 (775)
T ss_pred ---------------CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcC
Confidence 011223333333444555554455 89999999998743222 256788888742111
Q ss_pred ---------cCCCceEEEEEecCCchhhHHHhhcCccc
Q psy16204 458 ---------LYEDKIIMILAATNHPYQLLTLCLEGVVI 486 (577)
Q Consensus 458 ---------~~~~~~VlIIatTN~p~~L~~allrr~~i 486 (577)
.++..++++|+|||.++.|++++++|+.+
T Consensus 449 ~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~v 486 (775)
T TIGR00763 449 AFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEV 486 (775)
T ss_pred ccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeE
Confidence 12346799999999999999999999854
No 50
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.70 E-value=2.8e-16 Score=157.34 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=66.8
Q ss_pred cccccCcHHHHHHHHHHHHCcCCC----------ccccceeEEecCCCCChHHHHHHHHHHh-------CCeEEEEecCc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIM----------PEFFKEALERHSHGTGKTMLAKAVATEC-------GTTFFNVSSST 282 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~----------~~~~k~ILL~GPpGtGKT~LAkaLA~el-------~~~fv~v~~s~ 282 (577)
+++++|++.+|+.|++++.++... +....++||+||||||||++|+++|+.+ ..+++++++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 578999999999999887664221 2223579999999999999999999875 24789999999
Q ss_pred cccccccchHHHHHHHHHH
Q psy16204 283 LTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~ 301 (577)
+..+|+|+.+..++++|+.
T Consensus 85 l~~~~~g~~~~~~~~~~~~ 103 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKK 103 (261)
T ss_pred hhhhhccchHHHHHHHHHh
Confidence 9999999988888877764
No 51
>KOG0736|consensus
Probab=99.69 E-value=7.8e-16 Score=172.44 Aligned_cols=236 Identities=19% Similarity=0.298 Sum_probs=169.2
Q ss_pred cCcHHHHHHHHHHHHCcCCCc----cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHH
Q psy16204 224 AGLTEAKAILQEAMVLPTIMP----EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~----~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF 299 (577)
-+++.....+..++.-++... .+...+||+|+||||||++++++|+++|.+++.++|.++.....+.+|..+...|
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f 483 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIF 483 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHH
Confidence 344444444555543222111 2334689999999999999999999999999999999998888888888888777
Q ss_pred HHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhh
Q psy16204 300 EMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVA 379 (577)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (577)
.+
T Consensus 484 ~~------------------------------------------------------------------------------ 485 (953)
T KOG0736|consen 484 SR------------------------------------------------------------------------------ 485 (953)
T ss_pred HH------------------------------------------------------------------------------
Confidence 76
Q ss_pred hhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcC
Q psy16204 380 VVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY 459 (577)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~ 459 (577)
|+++.|+||||-.+|.+...+.+ +++.....+++.++. +|... .
T Consensus 486 -------------------------------a~~~~pavifl~~~dvl~id~dg-ged~rl~~~i~~~ls-~e~~~---~ 529 (953)
T KOG0736|consen 486 -------------------------------ARRCSPAVLFLRNLDVLGIDQDG-GEDARLLKVIRHLLS-NEDFK---F 529 (953)
T ss_pred -------------------------------HhhcCceEEEEeccceeeecCCC-chhHHHHHHHHHHHh-ccccc---C
Confidence 88999999999999999965543 445545555555555 33333 2
Q ss_pred CCceEEEEEecCCchh-------------------------hHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHH
Q psy16204 460 EDKIIMILAATNHPYQ-------------------------LLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA 514 (577)
Q Consensus 460 ~~~~VlIIatTN~p~~-------------------------L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~A 514 (577)
...+++|||+|+..+. |++.+.-+..++.++.++.+|..|.||+-+|+..++..+
T Consensus 530 ~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 530 SCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred CCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence 4578999999988766 455555566677778899999999999999999999887
Q ss_pred HHHHHHHHHhcCChhHHhhhhcc-C--CCCCCCHHHHHHHHHHhC------------CCCCHHHHHHHHHHHHh
Q psy16204 515 AMMSIRRKIMGQTPAQIKEIKQE-D--IDLPVTEKDFREAIARCR------------KSVTAHDLSKYDSWMNE 573 (577)
Q Consensus 515 a~~airr~~~~~~~~~~~~~~~~-~--~~~~It~~df~~Al~~~~------------psv~~~~~~~~~~~~~~ 573 (577)
...+.-+...+.......+.+.. . ....++++||.+|+.++| |.|+++|+..+++-+.+
T Consensus 610 s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 610 SLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred hHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHH
Confidence 44444333221111111111111 1 246799999999999775 88999999888877654
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=99.68 E-value=1.6e-15 Score=155.50 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=63.0
Q ss_pred cccccCcHHHHHHHHHHHHCc----------CCCccccceeEEecCCCCChHHHHHHHHHHhC-------CeEEEEecCc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLP----------TIMPEFFKEALERHSHGTGKTMLAKAVATECG-------TTFFNVSSST 282 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~p----------l~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-------~~fv~v~~s~ 282 (577)
+++++|++++|+.|.+.+.+. +..+....++||+||||||||++|+++|+.+. .+|+.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 568999999999998886441 11122223589999999999999999999862 3689999998
Q ss_pred cccccccchHHHHHHHHHH
Q psy16204 283 LTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~ 301 (577)
+..+|+|.++..++.+|+.
T Consensus 102 l~~~~~g~~~~~~~~~l~~ 120 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKK 120 (287)
T ss_pred HHHHHhccchHHHHHHHHH
Confidence 8888888877666666643
No 53
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=9e-16 Score=176.58 Aligned_cols=186 Identities=22% Similarity=0.212 Sum_probs=140.0
Q ss_pred CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCccccc-eeEEecCCC
Q psy16204 182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFFK-EALERHSHG 257 (577)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~k-~ILL~GPpG 257 (577)
..+..+++.+.+...+|+|...+...+...+.+.....-+.|+||+.+++.|..++.. .+..+..+. .+||+||+|
T Consensus 470 ~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~G 549 (821)
T CHL00095 470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTG 549 (821)
T ss_pred CccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCC
Confidence 4578899999999999999998887777777777777789999999999999999853 344455554 589999999
Q ss_pred CChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHH
Q psy16204 258 TGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQI 334 (577)
Q Consensus 258 tGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (577)
||||+||++||+.+ +.++++++++++.+.+. +..+.|++++|+|+.
T Consensus 550 vGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~----------------------------~~~l~g~~~gyvg~~--- 598 (821)
T CHL00095 550 VGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT----------------------------VSKLIGSPPGYVGYN--- 598 (821)
T ss_pred CcHHHHHHHHHHHhcCCccceEEEEchhcccccc----------------------------HHHhcCCCCcccCcC---
Confidence 99999999999997 36899999988755321 122345666666661
Q ss_pred HHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhc
Q psy16204 335 LQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCY 414 (577)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~ 414 (577)
.++.+.+. ++.+
T Consensus 599 -----------------------------------------------------------------~~~~l~~~---~~~~ 610 (821)
T CHL00095 599 -----------------------------------------------------------------EGGQLTEA---VRKK 610 (821)
T ss_pred -----------------------------------------------------------------ccchHHHH---HHhC
Confidence 11222222 4555
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCchhhHH
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPYQLLT 478 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~~L~~ 478 (577)
..+||||||||++++ .+++.||+.||.-. +...+.++.+||+|||....+..
T Consensus 611 p~~VvllDeieka~~------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~ 667 (821)
T CHL00095 611 PYTVVLFDEIEKAHP------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIE 667 (821)
T ss_pred CCeEEEECChhhCCH------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHH
Confidence 669999999999976 68999999998521 22345578999999998776544
No 54
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=3.1e-16 Score=178.14 Aligned_cols=235 Identities=24% Similarity=0.245 Sum_probs=176.7
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcc---cCC
Q psy16204 320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC---QSH 396 (577)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 396 (577)
.+..++++.|....+.++++.+..+-.++......+..+|.+++.|+++|+||+.............+...... ..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45667778888888889988887776777777788899999999999999999987544333322223222211 234
Q ss_pred CCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh
Q psy16204 397 EGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL 476 (577)
Q Consensus 397 ~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L 476 (577)
.|+....++..|..+..+.|+||||||||.++..++.. ..+...++++.|+..|+++... ..|+||+|||+++.|
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~~----~~vivI~atn~~~~l 327 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKGR----GRVIVIGATNRPDAL 327 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhccccC----CCEEEEeecCChhhc
Confidence 67788889999999999999999999999999877543 2344568899999999988643 569999999999999
Q ss_pred HHHhhcCccc---------------------------ccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy16204 477 LTLCLEGVVI---------------------------DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA 529 (577)
Q Consensus 477 ~~allrr~~i---------------------------~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~ 529 (577)
++++.+..++ ..++++..+++.++||+++||..+|++|++.++++.......+
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~ 407 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN 407 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 8888774332 2245789999999999999999999999999999876421110
Q ss_pred -HHhhhhc-cCCCCCCCHHHHHHHHHHhCCCC
Q psy16204 530 -QIKEIKQ-EDIDLPVTEKDFREAIARCRKSV 559 (577)
Q Consensus 530 -~~~~~~~-~~~~~~It~~df~~Al~~~~psv 559 (577)
....+.. ......++.+||..|+..++|+.
T Consensus 408 ~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 408 FEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred cccccccchhcccccccHHHHHHHHhhccccc
Confidence 0111111 11235699999999999998875
No 55
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=1.8e-15 Score=162.38 Aligned_cols=80 Identities=29% Similarity=0.300 Sum_probs=61.2
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCc----------c-ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMP----------E-FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYR 288 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~----------~-~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~ 288 (577)
+.|+||+.+++.|..++..+..+. . ...++||+||||||||++|++||+.++.+|+.++++.+.. .|+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV 150 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence 349999999999988774321111 1 1257999999999999999999999999999999998875 688
Q ss_pred cchH-HHHHHHHH
Q psy16204 289 GESE-KLVRLLFE 300 (577)
Q Consensus 289 G~~e-~~vr~lF~ 300 (577)
|.+. ..+..++.
T Consensus 151 G~d~e~~l~~l~~ 163 (412)
T PRK05342 151 GEDVENILLKLLQ 163 (412)
T ss_pred cchHHHHHHHHHH
Confidence 8763 33444443
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.64 E-value=1.1e-14 Score=148.61 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=62.6
Q ss_pred ccccCcHHHHHHHHHHHHCc----------CCCccccceeEEecCCCCChHHHHHHHHHHhC-------CeEEEEecCcc
Q psy16204 221 NKVAGLTEAKAILQEAMVLP----------TIMPEFFKEALERHSHGTGKTMLAKAVATECG-------TTFFNVSSSTL 283 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~p----------l~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-------~~fv~v~~s~l 283 (577)
.+++|++++|+.|.+.+.+. +.......++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 46899999999998876541 11111123799999999999999999998873 37999999988
Q ss_pred ccccccchHHHHHHHHHH
Q psy16204 284 TSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~ 301 (577)
...|.|.++..++.+|+.
T Consensus 102 ~~~~~g~~~~~~~~~~~~ 119 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKR 119 (284)
T ss_pred hHhhcccchHHHHHHHHH
Confidence 888888877777666654
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=1.2e-14 Score=165.45 Aligned_cols=236 Identities=16% Similarity=0.199 Sum_probs=154.2
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEE
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNV 278 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v 278 (577)
.+..+...+-.++.++|+++.++.+.+.+... ...++||+||||||||++|++||+.+ +..++.+
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~-----~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRR-----KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34444455667899999999999988877443 23589999999999999999999997 7789999
Q ss_pred ecCccc--cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204 279 SSSTLT--SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ 356 (577)
Q Consensus 279 ~~s~l~--~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (577)
+++.+. .+|.|+.+..++.+|+.
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~------------------------------------------------------- 269 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSE------------------------------------------------------- 269 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHH-------------------------------------------------------
Confidence 998887 47889999999888876
Q ss_pred CCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh
Q psy16204 357 ESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE 436 (577)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~ 436 (577)
+..+.++||||||||.|+......+.
T Consensus 270 ------------------------------------------------------~~~~~~~ILfiDEih~l~~~g~~~~~ 295 (731)
T TIGR02639 270 ------------------------------------------------------IEKEPNAILFIDEIHTIVGAGATSGG 295 (731)
T ss_pred ------------------------------------------------------HhccCCeEEEEecHHHHhccCCCCCc
Confidence 55566899999999999875422111
Q ss_pred hHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCch-----hhHHHhhcCccccccc---CHHH-------HHHHcC-
Q psy16204 437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPY-----QLLTLCLEGVVIDVNL---DFHK-------ISKMLE- 500 (577)
Q Consensus 437 ~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~-----~L~~allrr~~i~~~v---dl~~-------LA~~t~- 500 (577)
...+.+.|+..+.. ..+.+|+|||..+ .+++++.+||... .+ +.+. +....+
T Consensus 296 ---~~~~~~~L~~~l~~--------g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i-~v~~p~~~~~~~il~~~~~~~e~ 363 (731)
T TIGR02639 296 ---SMDASNLLKPALSS--------GKLRCIGSTTYEEYKNHFEKDRALSRRFQKI-DVGEPSIEETVKILKGLKEKYEE 363 (731)
T ss_pred ---cHHHHHHHHHHHhC--------CCeEEEEecCHHHHHHHhhhhHHHHHhCceE-EeCCCCHHHHHHHHHHHHHHHHh
Confidence 11234555555542 4488899988643 4799999988642 22 2221 222211
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHhcCChh-HHhhhh---------cc-CCCCCCCHHHHHHHHHHhC--C--CCCH
Q psy16204 501 ----GYTGSDIANLARDAAMMSIRRKIMGQTPA-QIKEIK---------QE-DIDLPVTEKDFREAIARCR--K--SVTA 561 (577)
Q Consensus 501 ----G~sgsDI~~l~~~Aa~~airr~~~~~~~~-~~~~~~---------~~-~~~~~It~~df~~Al~~~~--p--sv~~ 561 (577)
.++...|..++.-+....-.|. .|+ .+.-++ .. .....|+.+|+..+++... | .++.
T Consensus 364 ~~~v~i~~~al~~~~~ls~ryi~~r~----~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~ 439 (731)
T TIGR02639 364 FHHVKYSDEALEAAVELSARYINDRF----LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSV 439 (731)
T ss_pred ccCcccCHHHHHHHHHhhhccccccc----CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhh
Confidence 2566666666654433211111 111 111110 00 1124599999999999874 2 3456
Q ss_pred HHHHHHHHHHHhh
Q psy16204 562 HDLSKYDSWMNEF 574 (577)
Q Consensus 562 ~~~~~~~~~~~~~ 574 (577)
.+..++....+.+
T Consensus 440 ~~~~~l~~l~~~l 452 (731)
T TIGR02639 440 DDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHHHHHHHH
Confidence 6666776655544
No 58
>KOG0742|consensus
Probab=99.62 E-value=1e-14 Score=155.13 Aligned_cols=180 Identities=24% Similarity=0.306 Sum_probs=134.2
Q ss_pred CCCcccccCcHHHHHHHHHHH---HCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc-hH
Q psy16204 217 NVQWNKVAGLTEAKAILQEAM---VLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE-SE 292 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l---~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~-~e 292 (577)
+.-+++||-.-....+|.+.. ..-..+..+|++||||||||||||+.||.||...|..+-.+.+.++.- .|. .-
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP--lG~qaV 428 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP--LGAQAV 428 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc--cchHHH
Confidence 345888888777777776654 345556677899999999999999999999999999988888877632 232 24
Q ss_pred HHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCC
Q psy16204 293 KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGK 372 (577)
Q Consensus 293 ~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (577)
..++++|++|
T Consensus 429 TkiH~lFDWa---------------------------------------------------------------------- 438 (630)
T KOG0742|consen 429 TKIHKLFDWA---------------------------------------------------------------------- 438 (630)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 5577777762
Q ss_pred CCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh
Q psy16204 373 GPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 452 (577)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD 452 (577)
+|. +..-+|||||.|.+...|.....++..+..+|.||---
T Consensus 439 ----------------kkS----------------------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT- 479 (630)
T KOG0742|consen 439 ----------------KKS----------------------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT- 479 (630)
T ss_pred ----------------hhc----------------------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh-
Confidence 111 22359999999999999999888999999999998432
Q ss_pred CCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc-------------------------------------------
Q psy16204 453 GLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN------------------------------------------- 489 (577)
Q Consensus 453 ~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~------------------------------------------- 489 (577)
|.. .+.++++.+||+|.++|.++-+|+.-..+
T Consensus 480 Gdq-----SrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~ 554 (630)
T KOG0742|consen 480 GDQ-----SRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQR 554 (630)
T ss_pred ccc-----ccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhhe
Confidence 222 25588899999999987777766411000
Q ss_pred c---------CHHHHHHHcCCCCHHHHHHHHH
Q psy16204 490 L---------DFHKISKMLEGYTGSDIANLAR 512 (577)
Q Consensus 490 v---------dl~~LA~~t~G~sgsDI~~l~~ 512 (577)
| -+.+.|+.|+||||.+|..|+-
T Consensus 555 i~l~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 555 IKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred eeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 0 1367889999999999999974
No 59
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.62 E-value=9.2e-15 Score=149.95 Aligned_cols=165 Identities=22% Similarity=0.256 Sum_probs=125.4
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchH
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 292 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e 292 (577)
....+..|++.+||+++|++|.-++.....+.+.+.++|||||||.|||+||..||+|+|..+...++.-+- +
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-K------ 90 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-K------ 90 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-C------
Confidence 345577899999999999999999998888889999999999999999999999999999998777776441 1
Q ss_pred HHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCC
Q psy16204 293 KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGK 372 (577)
Q Consensus 293 ~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (577)
T Consensus 91 -------------------------------------------------------------------------------- 90 (332)
T COG2255 91 -------------------------------------------------------------------------------- 90 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh
Q psy16204 373 GPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 452 (577)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD 452 (577)
+.+++++++. -...+|+|||||+.+.+ .+-..|...|+
T Consensus 91 -~gDlaaiLt~-----------------------------Le~~DVLFIDEIHrl~~------------~vEE~LYpaME 128 (332)
T COG2255 91 -PGDLAAILTN-----------------------------LEEGDVLFIDEIHRLSP------------AVEEVLYPAME 128 (332)
T ss_pred -hhhHHHHHhc-----------------------------CCcCCeEEEehhhhcCh------------hHHHHhhhhhh
Confidence 1122222221 12237999999999977 23344556666
Q ss_pred CCCC----------Cc--CCCceEEEEEecCCchhhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16204 453 GLNS----------SL--YEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAA 515 (577)
Q Consensus 453 ~~~~----------~~--~~~~~VlIIatTN~p~~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa 515 (577)
.+.- .. .+-.+.-+|+||.+...|-..|..||.+...+++ |+..||+.++.+++
T Consensus 129 Df~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlef---------Y~~~eL~~Iv~r~a 194 (332)
T COG2255 129 DFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEF---------YTVEELEEIVKRSA 194 (332)
T ss_pred heeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeec---------CCHHHHHHHHHHHH
Confidence 4321 11 2345678999999999999999999998777766 88888888877654
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.62 E-value=1.1e-14 Score=168.41 Aligned_cols=182 Identities=24% Similarity=0.215 Sum_probs=135.9
Q ss_pred CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCC
Q psy16204 183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGT 258 (577)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGt 258 (577)
.+..+++...+...+|+|...+...+...+.+......+.|+||+.+++.|.+++... +..+..+ ..+||+||+||
T Consensus 527 ~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~Gv 606 (852)
T TIGR03346 527 EVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGV 606 (852)
T ss_pred CcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCC
Confidence 4778999999999999999887777777777776677889999999999999999653 3344444 45899999999
Q ss_pred ChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHH
Q psy16204 259 GKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQIL 335 (577)
Q Consensus 259 GKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (577)
|||++|++||+.+ +.+|++++++++.+.+. +..+.|++++|+|+..
T Consensus 607 GKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~----------------------------~~~l~g~~~g~~g~~~--- 655 (852)
T TIGR03346 607 GKTELAKALAEFLFDDEDAMVRIDMSEYMEKHS----------------------------VARLIGAPPGYVGYEE--- 655 (852)
T ss_pred CHHHHHHHHHHHhcCCCCcEEEEechhhcccch----------------------------HHHhcCCCCCccCccc---
Confidence 9999999999987 46899999998754321 2234466777777611
Q ss_pred HHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcC
Q psy16204 336 QMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYA 415 (577)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 415 (577)
++.+.+. .+...
T Consensus 656 -----------------------------------------------------------------~g~l~~~---v~~~p 667 (852)
T TIGR03346 656 -----------------------------------------------------------------GGQLTEA---VRRKP 667 (852)
T ss_pred -----------------------------------------------------------------ccHHHHH---HHcCC
Confidence 1122222 34455
Q ss_pred CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCchh
Q psy16204 416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPYQ 475 (577)
Q Consensus 416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~~ 475 (577)
.+||||||||++++ .+++.||+.++.-. +...+..+.+||+|||....
T Consensus 668 ~~vlllDeieka~~------------~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~ 720 (852)
T TIGR03346 668 YSVVLFDEVEKAHP------------DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQ 720 (852)
T ss_pred CcEEEEeccccCCH------------HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchH
Confidence 68999999999976 77999999997421 22234578999999998554
No 61
>KOG0735|consensus
Probab=99.61 E-value=1.3e-14 Score=161.68 Aligned_cols=210 Identities=20% Similarity=0.207 Sum_probs=147.4
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCccccccccchHHHHH
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTLTSKYRGESEKLVR 296 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l~~k~~G~~e~~vr 296 (577)
.+++-...+|+...+....|..++ .+|||+||+|+|||.||+++++++. +.+..++|+.+-.+.....
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~---~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~i----- 479 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRH---GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKI----- 479 (952)
T ss_pred Cceeecchhhhhhhhhhccccccc---ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHH-----
Confidence 466777777777776665553332 6899999999999999999999986 6788899998744322111
Q ss_pred HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcc
Q psy16204 297 LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWS 376 (577)
Q Consensus 297 ~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (577)
T Consensus 480 -------------------------------------------------------------------------------- 479 (952)
T KOG0735|consen 480 -------------------------------------------------------------------------------- 479 (952)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC-CCChhHHHHHHHHHHH-HHHhCC
Q psy16204 377 MVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG-SDSEHEASRRFKAELL-IQMDGL 454 (577)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~-~~~~~~~~~~v~~~LL-~~mD~~ 454 (577)
.+.+.++|.++.+++|+||++|++|.|++..+ .++++......++.+| +.++.+
T Consensus 480 ------------------------Qk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y 535 (952)
T KOG0735|consen 480 ------------------------QKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY 535 (952)
T ss_pred ------------------------HHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH
Confidence 22345566669999999999999999998432 2233333333444455 555554
Q ss_pred CCCcCCCceEEEEEecCCchhhHHHhhcCccccc----------------------------ccCHHHHHHHcCCCCHHH
Q psy16204 455 NSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV----------------------------NLDFHKISKMLEGYTGSD 506 (577)
Q Consensus 455 ~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~----------------------------~vdl~~LA~~t~G~sgsD 506 (577)
.. .+..+.+||+.+....|.+.|.....++. .-|++-++..|+||...|
T Consensus 536 ~~---~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~D 612 (952)
T KOG0735|consen 536 LK---RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATD 612 (952)
T ss_pred Hc---cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchh
Confidence 43 23568999998877775555444332211 115566999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 507 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 507 I~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
+..++.+|...++++.+.. ....+|.++|.++|..+.|.
T Consensus 613 L~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 613 LVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChH
Confidence 9999999999998665421 12369999999999998764
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=3.8e-14 Score=146.38 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=58.9
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+...+.+.+|++++|+++.++.|..++.........+.++|||||||||||++|+++|++++..+..+++.
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~ 85 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP 85 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc
Confidence 34566778999999999999999998865433345567899999999999999999999999888776654
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.59 E-value=2.3e-14 Score=144.97 Aligned_cols=63 Identities=25% Similarity=0.243 Sum_probs=53.7
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+|++++|++++++.|..++......+..+.+++|+||||||||+||+++|++++..+..+.+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~ 64 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGP 64 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccc
Confidence 689999999999999999865554555567899999999999999999999999887666544
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=7.4e-15 Score=168.47 Aligned_cols=180 Identities=18% Similarity=0.216 Sum_probs=120.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHH
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLV 295 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~v 295 (577)
.+.-+++.|++.+|+++.+++.......+ ....++|+||||||||++++.+|+.++.+|+.++++...+. ..+
T Consensus 318 ~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~------~~i 391 (784)
T PRK10787 318 EILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE------AEI 391 (784)
T ss_pred HHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCH------HHh
Confidence 34556899999999999998865333222 22468999999999999999999999999999997754321 111
Q ss_pred HHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCc
Q psy16204 296 RLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPW 375 (577)
Q Consensus 296 r~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (577)
+ ++...|
T Consensus 392 ~---------------------------------------------------------------g~~~~~---------- 398 (784)
T PRK10787 392 R---------------------------------------------------------------GHRRTY---------- 398 (784)
T ss_pred c---------------------------------------------------------------cchhcc----------
Confidence 0 001111
Q ss_pred chhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204 376 SMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455 (577)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~ 455 (577)
+|.+.+.+...+..+.... .||||||||++.....++ ..+.||+.+|.-.
T Consensus 399 ---------------------~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g~--------~~~aLlevld~~~ 448 (784)
T PRK10787 399 ---------------------IGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRGD--------PASALLEVLDPEQ 448 (784)
T ss_pred ---------------------CCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCCC--------HHHHHHHHhcccc
Confidence 1222222222222233233 489999999998753322 3678999888532
Q ss_pred CCc---------CCCceEEEEEecCCchhhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16204 456 SSL---------YEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAM 516 (577)
Q Consensus 456 ~~~---------~~~~~VlIIatTN~p~~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~ 516 (577)
+.. ++..+|++|||+|.. .|.++++.|+.+ +. ..+|+..++..+++....
T Consensus 449 ~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~i---i~-------~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 449 NVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEV---IR-------LSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceee---ee-------cCCCCHHHHHHHHHHhhh
Confidence 211 344789999999987 599999999975 22 377888888888777654
No 65
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.59 E-value=1.6e-14 Score=155.28 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=104.8
Q ss_pred CcccccCcHHHHHHHHHHHHC---cCCC-------cc--c-cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVL---PTIM-------PE--F-FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~---pl~~-------~~--~-~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
.-+.|+||++++..|..++.. .+.. +. . ..++||+||||||||++|++||+.++.+|..+++..+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 345689999999999887732 1111 10 1 257999999999999999999999999999999988764
Q ss_pred -ccccch-HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 286 -KYRGES-EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 286 -k~~G~~-e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
+|+|.+ +..+..++..+.
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~------------------------------------------------------------ 174 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAAD------------------------------------------------------------ 174 (413)
T ss_pred cccccccHHHHHHHHHHhCc------------------------------------------------------------
Confidence 688875 343444433200
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASR 441 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~ 441 (577)
.......++||||||||+++..+... ..+....
T Consensus 175 ---------------------------------------------~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 175 ---------------------------------------------YDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred ---------------------------------------------ccHHhcccceEEecccchhchhhccccccccccch
Confidence 00344567899999999999854321 1233344
Q ss_pred HHHHHHHHHHhCCCC-------CcCCCceEEEEEecCC
Q psy16204 442 RFKAELLIQMDGLNS-------SLYEDKIIMILAATNH 472 (577)
Q Consensus 442 ~v~~~LL~~mD~~~~-------~~~~~~~VlIIatTN~ 472 (577)
.+++.||+.|+|... ......+.++|+|+|-
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 789999999987432 2234567899999996
No 66
>KOG0743|consensus
Probab=99.58 E-value=1.4e-14 Score=155.67 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=123.2
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G 289 (577)
-+++-++-..+.|+.|.+-+..-+.+++.+ +|.|||||||||||++.-|+|+.++..++.++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 578888888888888888776555554444 68999999999999999999999999999888876522
Q ss_pred chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204 290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG 369 (577)
Q Consensus 290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (577)
+.. ++.|.-.
T Consensus 274 -n~d-Lr~LL~~-------------------------------------------------------------------- 283 (457)
T KOG0743|consen 274 -DSD-LRHLLLA-------------------------------------------------------------------- 283 (457)
T ss_pred -cHH-HHHHHHh--------------------------------------------------------------------
Confidence 212 4443321
Q ss_pred CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh-----h-HHHHHH
Q psy16204 370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-----H-EASRRF 443 (577)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-----~-~~~~~v 443 (577)
....+||+|.+||+-...++.... + ....-.
T Consensus 284 -------------------------------------------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VT 320 (457)
T KOG0743|consen 284 -------------------------------------------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVT 320 (457)
T ss_pred -------------------------------------------CCCCcEEEEeecccccccccccccccccccCCcceee
Confidence 123479999999988765532221 1 112235
Q ss_pred HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc--------CHHHHHHHcCCCC
Q psy16204 444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL--------DFHKISKMLEGYT 503 (577)
Q Consensus 444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v--------dl~~LA~~t~G~s 503 (577)
++-||..+||+.+... +--+||+|||+++.||+||+|+++++..+ .|..||...-|..
T Consensus 321 lSGLLNfiDGlwSscg--~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 321 LSGLLNFLDGLWSSCG--DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred hHHhhhhhccccccCC--CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 7789999999998632 34689999999999999999999988665 4677777776664
No 67
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=2.8e-14 Score=165.19 Aligned_cols=183 Identities=23% Similarity=0.211 Sum_probs=133.9
Q ss_pred CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCC
Q psy16204 183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGT 258 (577)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGt 258 (577)
.+..+++...++..+|+|...+...+...+.+......+.|+|++.+++.|...+... +..+..+ ..+||+||+||
T Consensus 530 ~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~ 609 (857)
T PRK10865 530 KVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGV 609 (857)
T ss_pred ccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCC
Confidence 3678889999999999999987777777777777788899999999999999998642 3344444 36899999999
Q ss_pred ChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHH
Q psy16204 259 GKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQIL 335 (577)
Q Consensus 259 GKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (577)
|||++|++||+.+ +.+|+.++|+++.+.+ .+ ..+.|++++|+|+..
T Consensus 610 GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~------~~----------------------~~LiG~~pgy~g~~~--- 658 (857)
T PRK10865 610 GKTELCKALANFMFDSDDAMVRIDMSEFMEKH------SV----------------------SRLVGAPPGYVGYEE--- 658 (857)
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh------hH----------------------HHHhCCCCcccccch---
Confidence 9999999999987 4579999998764321 11 123355666666521
Q ss_pred HHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcC
Q psy16204 336 QMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYA 415 (577)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 415 (577)
++.+.+. .+...
T Consensus 659 -----------------------------------------------------------------~g~l~~~---v~~~p 670 (857)
T PRK10865 659 -----------------------------------------------------------------GGYLTEA---VRRRP 670 (857)
T ss_pred -----------------------------------------------------------------hHHHHHH---HHhCC
Confidence 1122222 33445
Q ss_pred CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCchhh
Q psy16204 416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPYQL 476 (577)
Q Consensus 416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p~~L 476 (577)
.+|||||||+++.+ .+++.|++.++.- .+...+..+.+||+|||.....
T Consensus 671 ~~vLllDEieka~~------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHP------------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDL 724 (857)
T ss_pred CCeEEEeehhhCCH------------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHH
Confidence 58999999999876 6789999998742 1222455778999999986443
No 68
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.2e-14 Score=150.73 Aligned_cols=185 Identities=39% Similarity=0.522 Sum_probs=158.0
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTT 326 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~ 326 (577)
+++++++||||+|||++++++|.+ +..++.+++.....+|.|.++..++.+|+.
T Consensus 18 ~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 71 (494)
T COG0464 18 PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEE------------------------- 71 (494)
T ss_pred CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHH-------------------------
Confidence 478999999999999999999999 777788999999999999999999999987
Q ss_pred cchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhh
Q psy16204 327 TFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKN 406 (577)
Q Consensus 327 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 406 (577)
T Consensus 72 -------------------------------------------------------------------------------- 71 (494)
T COG0464 72 -------------------------------------------------------------------------------- 71 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc
Q psy16204 407 SLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI 486 (577)
Q Consensus 407 ~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i 486 (577)
++.+.|+++++||+|.+++.+.. ......+++.+.|+..++++. ... ++++++||.+..++.++.+...+
T Consensus 72 ----a~~~~~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~----~~~-v~~~~~~~~~~~~~~a~~~~~~~ 141 (494)
T COG0464 72 ----AEKLAPSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK----RGQ-VIVIGATNRPDGLDPAKRRPGRF 141 (494)
T ss_pred ----HHHhCCCeEeechhhhcccCccc-cccchhhHHHHHHHHhccccc----CCc-eEEEeecCCccccChhHhCcccc
Confidence 77888899999999999999877 556677899999999999998 335 99999999999988888876544
Q ss_pred cc---------------------------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCC
Q psy16204 487 DV---------------------------NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDI 539 (577)
Q Consensus 487 ~~---------------------------~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~ 539 (577)
+. +.++..++..+.||+++|+..++.++.+.++++.. .....
T Consensus 142 ~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~ 210 (494)
T COG0464 142 DREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGE 210 (494)
T ss_pred ceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcc
Confidence 43 33678999999999999999999999999999963 00112
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q psy16204 540 DLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 540 ~~~It~~df~~Al~~~~ps 558 (577)
...++.+||.++++.+.|+
T Consensus 211 ~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 211 YIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred cccccHHHHHHHHHhcCcc
Confidence 3469999999999998664
No 69
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.7e-14 Score=145.95 Aligned_cols=83 Identities=28% Similarity=0.288 Sum_probs=64.1
Q ss_pred CcccccCcHHHHHHHHHHHHCc---CCC------cccc-ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLP---TIM------PEFF-KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KY 287 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~p---l~~------~~~~-k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~ 287 (577)
.-+-|+||+.+|..|.-++-.. +.. -++. .+|||.||+|+|||.||+-||+-++.||..-++..|++ +|
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred hhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 3456899999999886555221 111 1122 57999999999999999999999999999999999998 89
Q ss_pred ccchH-HHHHHHHHH
Q psy16204 288 RGESE-KLVRLLFEM 301 (577)
Q Consensus 288 ~G~~e-~~vr~lF~~ 301 (577)
+|++- ..+..+...
T Consensus 139 VGEDVENillkLlqa 153 (408)
T COG1219 139 VGEDVENILLKLLQA 153 (408)
T ss_pred cchhHHHHHHHHHHH
Confidence 99994 445566654
No 70
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.51 E-value=2e-14 Score=152.68 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=114.6
Q ss_pred hhhhcCCCCCcccccCcHHHH---HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAK---AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak---~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
+......+.++++++||+... ..|.+++.. ....+++||||||||||+||+.||...++.|..+++-.-
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-----~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--- 84 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-----GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--- 84 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc-----CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc---
Confidence 344456678899999999876 345555532 223589999999999999999999999999999998643
Q ss_pred cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204 287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ 356 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (577)
.-+-+|++|+.|....+. +++|||||++++++..+-++...+..|-+..++.|++|++|++..|.
T Consensus 85 ----gvkdlr~i~e~a~~~~~~-gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 85 ----GVKDLREIIEEARKNRLL-GRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNP 149 (436)
T ss_pred ----cHHHHHHHHHHHHHHHhc-CCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecH
Confidence 347899999999888777 99999999999999999999999999999999999999999999977
No 71
>KOG2028|consensus
Probab=99.51 E-value=6e-14 Score=147.83 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=107.4
Q ss_pred cCCCCCcccccCcHHHHHH---HHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe---EEEEecCcccccc
Q psy16204 214 NNPNVQWNKVAGLTEAKAI---LQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT---FFNVSSSTLTSKY 287 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~---L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~---fv~v~~s~l~~k~ 287 (577)
...+..++|.+||+..... |+.++. .....+++||||||||||+|||.|+.....+ |+.+++..-
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a---- 201 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA---- 201 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc----
Confidence 4455667777777665543 333332 2233589999999999999999999998766 777776532
Q ss_pred ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204 288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ 356 (577)
Q Consensus 288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (577)
..+-+|++|++|.+...+++++||||++++++|+..-++-..+..+-+-.+++|++|++|++..|.
T Consensus 202 ---~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 202 ---KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred ---chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhH
Confidence 346799999999999999999999999999999999999999999999999999999999999976
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=7.9e-13 Score=144.40 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=52.5
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+..++.+..|++|+||+.+...|..++... .+...+||+||+|||||++|+++|+.+++.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSG----KIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4556788899999999999999999988543 345679999999999999999999998863
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.2e-12 Score=144.06 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=52.3
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+.+|++|+|++.+++.|..++.. ..++..+||+||+|||||++|+++|+.++|.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~----~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ----QYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh----CCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45678899999999999999999999854 3445678999999999999999999999864
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.2e-12 Score=142.82 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=51.2
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..++.+.+|++|+|++.+++.|..++..+ .++.++|||||||||||++|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN----SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 446788899999999999999999887543 45567999999999999999999999875
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.4e-12 Score=146.61 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=52.0
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..++.+.+|++|+|++.+++.|.+++... ++...+||+||+|||||++|++||+.+.|
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g----RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ----RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456788899999999999999999998543 45567899999999999999999999887
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=4.5e-13 Score=147.94 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=58.0
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEE
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFN 277 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~ 277 (577)
.+++.+.+.+..|++|+|++.+++.|..++..+ ...++||+||||||||++|+++++.+ +.+|+.
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~-----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP-----NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 446777888899999999999999999876433 23589999999999999999998764 368999
Q ss_pred EecCc
Q psy16204 278 VSSST 282 (577)
Q Consensus 278 v~~s~ 282 (577)
++|..
T Consensus 127 id~~~ 131 (531)
T TIGR02902 127 IDATT 131 (531)
T ss_pred Ecccc
Confidence 99874
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.2e-12 Score=145.20 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=52.1
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+..|++|+|++.+++.|..++.. ..+...+||+||+|||||++|+++|+.++|.
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~----grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALER----GRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44577889999999999999999999853 3455789999999999999999999999873
No 78
>KOG1051|consensus
Probab=99.48 E-value=1.5e-13 Score=158.04 Aligned_cols=177 Identities=21% Similarity=0.185 Sum_probs=139.5
Q ss_pred ChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcC---CCccccceeEEecCCCCChH
Q psy16204 185 FRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT---IMPEFFKEALERHSHGTGKT 261 (577)
Q Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl---~~~~~~k~ILL~GPpGtGKT 261 (577)
...++.+.++..+|++.......+...+.......-+.|+||++|...|.++|.... .+++..-.+||.||.|||||
T Consensus 526 ~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt 605 (898)
T KOG1051|consen 526 GESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKT 605 (898)
T ss_pred CccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHH
Confidence 566788899999999988887777777777777788999999999999999996643 33323346899999999999
Q ss_pred HHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHH
Q psy16204 262 MLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMN 338 (577)
Q Consensus 262 ~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (577)
.||++||..+ .-.|+.++++++.+ |+.++++|++|.|+
T Consensus 606 ~lAkaLA~~~Fgse~~~IriDmse~~e-------------------------------vskligsp~gyvG~-------- 646 (898)
T KOG1051|consen 606 ELAKALAEYVFGSEENFIRLDMSEFQE-------------------------------VSKLIGSPPGYVGK-------- 646 (898)
T ss_pred HHHHHHHHHHcCCccceEEechhhhhh-------------------------------hhhccCCCcccccc--------
Confidence 9999999987 25788999987633 35678899999998
Q ss_pred HHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeE
Q psy16204 339 RRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPST 418 (577)
Q Consensus 339 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~I 418 (577)
++++.+.++ .+....+|
T Consensus 647 ------------------------------------------------------------e~gg~Ltea---vrrrP~sV 663 (898)
T KOG1051|consen 647 ------------------------------------------------------------EEGGQLTEA---VKRRPYSV 663 (898)
T ss_pred ------------------------------------------------------------hhHHHHHHH---HhcCCceE
Confidence 233334444 56667799
Q ss_pred EEEccccccccCCCCCChhHHHHHHHHHHHHHHhC-----CCCCcCCCceEEEEEecCCchh
Q psy16204 419 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPYQ 475 (577)
Q Consensus 419 IfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~-----~~~~~~~~~~VlIIatTN~p~~ 475 (577)
|||||||+.++ .+++.|++.+|. ..+...+.+|++||+|+|.-..
T Consensus 664 VLfdeIEkAh~------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~ 713 (898)
T KOG1051|consen 664 VLFEEIEKAHP------------DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSS 713 (898)
T ss_pred EEEechhhcCH------------HHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchH
Confidence 99999999987 789999999985 2334467789999999887444
No 79
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=2e-12 Score=146.99 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=52.1
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+.++|.+.+|++|+|++.+++.|..++.. ..+...+||+||+|||||++|++||+.++|.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~----gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG----GRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44678899999999999999999999853 3455678999999999999999999999864
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.5e-12 Score=148.20 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=52.5
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+..++.+.+|++|+|++.++..|+.++.. .++...+||+||||||||++||++|+.+++.
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~----~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQ----QRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHh----CCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 345678889999999999999999998854 2455678999999999999999999998875
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.2e-12 Score=135.82 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=52.5
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+.+++.+.+|++|+|++.+++.|..++.. ..++..+||+||||+|||++|+++|+++.+.
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~----~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSL----GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHc----CCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 345678889999999999999999998854 2455678999999999999999999998764
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.44 E-value=2.8e-12 Score=136.97 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=56.5
Q ss_pred hhhcCCCCCcccccCcHHHHHH---HHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAI---LQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~---L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+.+.+.+.++++++|++.+... |...+... ...++||+||||||||++|++||+.++..|+.+++..
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~-----~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG-----RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcC-----CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4556778899999999999766 88887442 2358999999999999999999999999999998864
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.3e-12 Score=140.05 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=51.2
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..++.+.+|++|+||+.+++.|..++.. ..++.++||+||+|+|||++|+++|+.++|.
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~----~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL----NKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3577889999999999999999988854 3456789999999999999999999998763
No 84
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.44 E-value=3.4e-13 Score=128.87 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=47.8
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCchhhHH
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPYQLLT 478 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~~L~~ 478 (577)
|||||||||+++. .+.+.+.....|++.||+.||+-. +...+.++++||+|+|.-.....
T Consensus 71 VVllDEidKa~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~ 135 (171)
T PF07724_consen 71 VVLLDEIDKAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEII 135 (171)
T ss_dssp EEEEETGGGCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHH
T ss_pred hhhhHHHhhcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhh
Confidence 9999999999986 566778888999999999998522 22345688999999997665433
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=3.9e-12 Score=140.06 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=53.0
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+..++.+.+|++++|++.+++.|..++.. ..++.++||+||||||||++|+++|+.+++.
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~----~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILN----DRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456778899999999999999999988744 3455789999999999999999999999874
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.7e-12 Score=149.81 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=52.2
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..+|.+.+|++|+|++.+++.|+.++.. ..+...+||+||+|||||++|++||+.+.|.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~----~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS----GRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh----CCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 44678899999999999999999999854 3455678999999999999999999999874
No 87
>PRK04195 replication factor C large subunit; Provisional
Probab=99.43 E-value=2.3e-12 Score=140.27 Aligned_cols=74 Identities=24% Similarity=0.185 Sum_probs=64.3
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
.|.+++.+.++++|+|++++++.|...+..-. ....++++||+||||||||++|++||++++..++.+++++..
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~-~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL-KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 57889999999999999999999999885422 223367899999999999999999999999999999998753
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.7e-12 Score=143.19 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=52.7
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+.+|++|+|++.+++.|..++.. ..+..++||+||+|||||++|+++|+.+++.
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~----~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE----GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 45678889999999999999999999864 3455789999999999999999999998764
No 89
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.6e-12 Score=142.05 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=51.4
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..++.+..|++|+|++.+++.|..++.. ..+...+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~----~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT----GRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4567889999999999999999999854 3456788999999999999999999998763
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.9e-12 Score=140.70 Aligned_cols=61 Identities=25% Similarity=0.251 Sum_probs=53.0
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+..++.+.+|++|+|++.+++.|..++.. ..+..++||+||+|||||++|+++|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~----~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQE----NRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 456778899999999999999999999854 2445689999999999999999999998763
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=5.2e-12 Score=145.81 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=71.6
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEE
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFN 277 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~ 277 (577)
..++......-.++.|+|.++.++.+.+.+... ..+++||+||||||||++|+.||..+ +..++.
T Consensus 166 ~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~-----~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 166 GTNLTKEAIDGNLDPVIGREKEIERVIQILGRR-----TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred HHHHHHHHHcCCCCCCCCcHHHHHHHHHHHccc-----ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 334444445567899999999999999998543 33589999999999999999999987 378899
Q ss_pred EecCccc--cccccchHHHHHHHHHH
Q psy16204 278 VSSSTLT--SKYRGESEKLVRLLFEM 301 (577)
Q Consensus 278 v~~s~l~--~k~~G~~e~~vr~lF~~ 301 (577)
++++.+. .+|.|+.|..++.+|+.
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~ 266 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDE 266 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHH
Confidence 9988776 47888888888888876
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=9.8e-12 Score=139.66 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=51.7
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..++.+.+|++|+|++.+++.|..++... .+...+||+||+|||||++|+++|+.++|
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ----RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456788899999999999999999998543 45567899999999999999999999876
No 93
>PLN03025 replication factor C subunit; Provisional
Probab=99.40 E-value=8.7e-12 Score=128.62 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=55.2
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSST 282 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~ 282 (577)
+|.+++.+.++++++|++++++.|+.++..+ . ..++|||||||||||++|+++|+++.+ .++.+++++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~----~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG----N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC----C-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 4778999999999999999999999887542 2 236999999999999999999999743 345555544
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=5.9e-12 Score=144.31 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=60.3
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEec
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSS 280 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~ 280 (577)
.......-.++.++|.++..+.+.+.+... ...++||+||||||||.+|+++|..+ ++.++.++.
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~-----~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 333334456788999999999999988552 23578999999999999999999875 344555554
Q ss_pred Cccc--cccccchHHHHHHHHHH
Q psy16204 281 STLT--SKYRGESEKLVRLLFEM 301 (577)
Q Consensus 281 s~l~--~k~~G~~e~~vr~lF~~ 301 (577)
..+. .+|.|+.+..++.+|..
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~ 273 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQ 273 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHH
Confidence 4444 34566666666655544
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.38 E-value=1.3e-11 Score=143.16 Aligned_cols=89 Identities=13% Similarity=0.220 Sum_probs=68.8
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----------CeEEE
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----------TTFFN 277 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----------~~fv~ 277 (577)
..+......+-.++.++|++..+..+.+.+... ...++||+||||||||++|+.||+.+. ..++.
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~-----~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRR-----RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcC-----CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 334445556678899999999988888776432 235899999999999999999999863 45777
Q ss_pred EecCcccc--ccccchHHHHHHHHHH
Q psy16204 278 VSSSTLTS--KYRGESEKLVRLLFEM 301 (577)
Q Consensus 278 v~~s~l~~--k~~G~~e~~vr~lF~~ 301 (577)
++.+.+.. +|.|+.+..++.+|+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e 274 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDE 274 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHH
Confidence 77777653 6888888888888875
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.4e-11 Score=138.97 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=51.6
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+.+|++|+|++.++..|..++.. ..+...+||+||+|||||++|+++|+.++|.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~----~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDL----GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 34567889999999999999999998854 2455678999999999999999999998874
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.5e-11 Score=136.61 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=51.6
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.+..++.+..|++|+|++.+++.|..++... .+...+||+||+|||||++|+++|+.+.+
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQ----KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556788899999999999999999988542 44567899999999999999999999876
No 98
>KOG0989|consensus
Probab=99.38 E-value=1.8e-11 Score=127.03 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=52.2
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.|.++|.+.+++++.||+.+.+.|..++.. .....+|||||||||||+.|+++|.++.+
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-----cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 477889999999999999999999999954 12248999999999999999999999986
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=1.4e-11 Score=126.60 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=52.6
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
++..++++..|++|+|++.+++.|.+.+.. ..++..+|||||||+|||++|+++|+.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~----~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN----GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456778889999999999999999998854 3455679999999999999999999998654
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=138.14 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=50.9
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.++.+.+|++|+|++.+++.|+.++.. ..++..+||+||+|||||++|+++|+.+.|.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~----~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA----GRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 567889999999999999999999854 3455678999999999999999999998863
No 101
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.6e-11 Score=137.25 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=52.7
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.|.+++.+..|++|+|++.+++.|..++.. ..++.++||+||+|||||++|+++|+.+.|
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~----~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN----NKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567788999999999999999999998843 244578999999999999999999999865
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.36 E-value=4.9e-12 Score=146.70 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=71.2
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEE
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNV 278 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v 278 (577)
.+......+-.++.|+|++..++.+.+.+... ...++||+||||||||++|++||..+ +.+++.+
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~-----~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcC-----CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34445555667899999999988888887442 23578999999999999999999998 6788999
Q ss_pred ecCccc--cccccchHHHHHHHHHH
Q psy16204 279 SSSTLT--SKYRGESEKLVRLLFEM 301 (577)
Q Consensus 279 ~~s~l~--~k~~G~~e~~vr~lF~~ 301 (577)
+.+.+. .+|.|+.+..++.+|+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~ 265 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLND 265 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHH
Confidence 888876 46888888888888865
No 103
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.9e-11 Score=134.62 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=50.4
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..++.+..|++|+|++.+++.|..++.. ..++..+||+||||||||++|+++|+.+.+
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ----GRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3578889999999999999999999854 234566799999999999999999999865
No 104
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.6e-11 Score=136.61 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=51.1
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..++.+.+|++|+|++.+++.|+.++.. ..+...+||+||+|||||++|+.+|+++.|.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~----~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ----GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3567889999999999999999999864 2345679999999999999999999998764
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1e-11 Score=132.94 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=47.6
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCC-----ccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIM-----PEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~-----~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.|++|+|++.+++.|+.++..+... ..++.++||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999999999775421 1256789999999999999999999997764
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.8e-11 Score=139.22 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=53.5
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+..++++..|++|+|++.+++.|...+.. ..+...+||+||+|||||++|+++|+.+.|.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~----~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS----NKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 456788899999999999999999999854 3456789999999999999999999998774
No 107
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.35 E-value=2.5e-11 Score=123.53 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=58.8
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEecCccc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSSSTLT 284 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~s~l~ 284 (577)
.|.+++.+.++++++|++.+++.|..++..+. ..++||+||||||||++|+++++++. .++++++++++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~-----~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPN-----LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 57788899999999999999999999886531 23699999999999999999999984 356788887653
No 108
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=6.3e-12 Score=127.89 Aligned_cols=71 Identities=24% Similarity=0.178 Sum_probs=61.9
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+-.|..++.+..+++++|++++++.|...+.. ...+..+||+||||+|||++|++++++++.+++++++++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK----GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc----CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 44788899999999999999999999999853 344566777999999999999999999999999998875
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=5.4e-11 Score=129.24 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=52.2
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+.+++.+.+|++|+|++.++..|...+.. ..++.++|||||+|+|||++|+++|+.+.+.
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~----~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRF----NRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 345677889999999999999999999854 3455789999999999999999999998764
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=7.9e-11 Score=130.25 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=51.5
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+..|++|+|++.+++.|..++.. ..+...+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~----~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ----QRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc----CCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44567788999999999999999998854 3445678999999999999999999998864
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.5e-11 Score=126.95 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=52.8
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+.+++.+.+|++|+|++.+++.+...+.. ..++.++|||||||+|||++|+++|+.+.++
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~----~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN----NHLAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456788899999999999999999999854 3455789999999999999999999998653
No 112
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=9.7e-11 Score=122.56 Aligned_cols=65 Identities=18% Similarity=0.029 Sum_probs=53.0
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT 284 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~ 284 (577)
..+.++|.++..+.|...+...+. ...+.+++++||||||||++++.+++++ ++.+++++|....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 446899999999999998854433 2334679999999999999999999887 5789999998654
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=5.9e-11 Score=126.51 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=52.0
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
....+.+..|++|+|++.++..|+.++.. ..++.++||+||||||||++|+++|+.+.+.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~----~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM----GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh----CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34577889999999999999999998854 3456789999999999999999999999874
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=1.2e-10 Score=120.36 Aligned_cols=64 Identities=20% Similarity=0.101 Sum_probs=51.4
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCccc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSSTLT 284 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~l~ 284 (577)
.++++|.++.++.|..++...+. ...+.+++++||||||||++++++++++. +.+++++|....
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 35899999999999998854332 23446799999999999999999998763 578999997653
No 115
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-11 Score=133.00 Aligned_cols=143 Identities=23% Similarity=0.299 Sum_probs=106.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccccccccch
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTSKYRGES 291 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~ 291 (577)
....++++|+|...+...+.+.+..- ......||+.|.+||||..+|++|.+... .||+.++|..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~---A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP------- 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI---AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP------- 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh---cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-------
Confidence 34568999999999988888877432 23336899999999999999999998874 799999999874
Q ss_pred HHHHH-HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccc-ccccCCCCccccccccC
Q psy16204 292 EKLVR-LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTR-AENQESGPSIFSVMVDG 369 (577)
Q Consensus 292 e~~vr-~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 369 (577)
+.++. ++|.. .+|||||+... ..|.
T Consensus 309 e~LlESELFGy----------------------------------------e~GAFTGA~~~GK~Gl------------- 335 (560)
T COG3829 309 ETLLESELFGY----------------------------------------EKGAFTGASKGGKPGL------------- 335 (560)
T ss_pred HHHHHHHHhCc----------------------------------------CCccccccccCCCCcc-------------
Confidence 34443 55543 57999998754 4433
Q ss_pred CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204 370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI 449 (577)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~ 449 (577)
|+.+.. ..||+|||..|.. .++..||.
T Consensus 336 ---------------fE~A~g--------------------------GTLFLDEIgempl------------~LQaKLLR 362 (560)
T COG3829 336 ---------------FELANG--------------------------GTLFLDEIGEMPL------------PLQAKLLR 362 (560)
T ss_pred ---------------eeeccC--------------------------CeEEehhhccCCH------------HHHHHHHH
Confidence 344444 4999999988865 56888888
Q ss_pred HHh-----CCCCCcCCCceEEEEEecCCc
Q psy16204 450 QMD-----GLNSSLYEDKIIMILAATNHP 473 (577)
Q Consensus 450 ~mD-----~~~~~~~~~~~VlIIatTN~p 473 (577)
.+. .+.+...-.-.|-||||||+.
T Consensus 363 VLQEkei~rvG~t~~~~vDVRIIAATN~n 391 (560)
T COG3829 363 VLQEKEIERVGGTKPIPVDVRIIAATNRN 391 (560)
T ss_pred HHhhceEEecCCCCceeeEEEEEeccCcC
Confidence 876 355544445679999999975
No 116
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=5.4e-11 Score=129.58 Aligned_cols=141 Identities=25% Similarity=0.340 Sum_probs=109.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccccccccchHH
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTSKYRGESEK 293 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~e~ 293 (577)
......|||+..+...+.+.+..-.... ..|||.|.+||||-.+||+|.+... .||++++|+.+-+ .
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd---~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe-------s 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD---STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE-------S 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC---CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch-------H
Confidence 4577899999999999999885522211 4799999999999999999998875 6999999998743 3
Q ss_pred HHH-HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCC
Q psy16204 294 LVR-LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGK 372 (577)
Q Consensus 294 ~vr-~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (577)
.+. ++|.. .+||||++-..+.|.
T Consensus 289 LlESELFGH----------------------------------------eKGAFTGA~~~r~Gr---------------- 312 (550)
T COG3604 289 LLESELFGH----------------------------------------EKGAFTGAINTRRGR---------------- 312 (550)
T ss_pred HHHHHHhcc----------------------------------------cccccccchhccCcc----------------
Confidence 443 56654 689999999888866
Q ss_pred CCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh
Q psy16204 373 GPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 452 (577)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD 452 (577)
|+.+.+| .||+|||..|.. .++..||..+.
T Consensus 313 ------------FElAdGG--------------------------TLFLDEIGelPL------------~lQaKLLRvLQ 342 (550)
T COG3604 313 ------------FELADGG--------------------------TLFLDEIGELPL------------ALQAKLLRVLQ 342 (550)
T ss_pred ------------eeecCCC--------------------------eEechhhccCCH------------HHHHHHHHHHh
Confidence 6666666 999999998876 56777777664
Q ss_pred -----CCCCCcCCCceEEEEEecCCc
Q psy16204 453 -----GLNSSLYEDKIIMILAATNHP 473 (577)
Q Consensus 453 -----~~~~~~~~~~~VlIIatTN~p 473 (577)
.+.++....-.|-||||||+-
T Consensus 343 egEieRvG~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 343 EGEIERVGGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred hcceeecCCCceeEEEEEEEeccchh
Confidence 455543344569999999974
No 117
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=6.3e-11 Score=133.34 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=53.1
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
++..++.+..|++|+|++.+++.|..++... .+..++||+||+|+|||++|+++|+.+.+.
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISN----RIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4556788899999999999999999998653 344689999999999999999999999874
No 118
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=2.5e-11 Score=140.75 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=68.2
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS 279 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~ 279 (577)
+..+...+-.++.++|++..++.+.+.+... ...++||+||||||||++|+++|..+ +.+++.++
T Consensus 162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~-----~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcC-----CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 4445555667899999999988888887442 23578999999999999999999986 56788888
Q ss_pred cCccc--cccccchHHHHHHHHHH
Q psy16204 280 SSTLT--SKYRGESEKLVRLLFEM 301 (577)
Q Consensus 280 ~s~l~--~k~~G~~e~~vr~lF~~ 301 (577)
.+.+. .+|.|+.+..++.+|..
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~ 260 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNE 260 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHH
Confidence 77765 46778878777777765
No 119
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.28 E-value=4.2e-12 Score=139.66 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=119.0
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeE--EEEecCccccccc
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTF--FNVSSSTLTSKYR 288 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f--v~v~~s~l~~k~~ 288 (577)
...++.+..|++++||+.+...|..++... ++..+.||.||.|||||++||.+|+.++|.- ..-.|.+... ..
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~-Ck 80 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG----RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS-CK 80 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-hH
Confidence 446788899999999999999999998653 4456899999999999999999999998752 1111111100 00
Q ss_pred cchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccccc
Q psy16204 289 GESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVD 368 (577)
Q Consensus 289 G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 368 (577)
+-.+...-++.+
T Consensus 81 ~I~~g~~~DviE-------------------------------------------------------------------- 92 (515)
T COG2812 81 EINEGSLIDVIE-------------------------------------------------------------------- 92 (515)
T ss_pred hhhcCCcccchh--------------------------------------------------------------------
Confidence 000000001111
Q ss_pred CCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHH
Q psy16204 369 GLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL 448 (577)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL 448 (577)
-..+++ ..++|...+++++.+......+.|++|||++.|.. ..+|.||
T Consensus 93 ----------iDaASn----------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------------~afNALL 140 (515)
T COG2812 93 ----------IDAASN----------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------------QAFNALL 140 (515)
T ss_pred ----------hhhhhc----------cChHHHHHHHHHhccCCccccceEEEEecHHhhhH------------HHHHHHh
Confidence 111111 13566677777776666677778999999998865 5699999
Q ss_pred HHHhCCCCCcCCCceEEEEEecCCchhhHHH-hhcCcccc-cccCHHHHHHHcCCC
Q psy16204 449 IQMDGLNSSLYEDKIIMILAATNHPYQLLTL-CLEGVVID-VNLDFHKISKMLEGY 502 (577)
Q Consensus 449 ~~mD~~~~~~~~~~~VlIIatTN~p~~L~~a-llrr~~i~-~~vdl~~LA~~t~G~ 502 (577)
..++.-. .||++|.||..|..|+.. +.|+-.++ ..++.+.|+.+...+
T Consensus 141 KTLEEPP------~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i 190 (515)
T COG2812 141 KTLEEPP------SHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAI 190 (515)
T ss_pred cccccCc------cCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHH
Confidence 9999765 457777777777775444 44444443 457777777766433
No 120
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1e-10 Score=130.37 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=51.3
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..++.+..|++|+|++.+++.|...+.. ..++..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIES----NKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 3567888999999999999999999854 3455789999999999999999999998763
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.6e-10 Score=130.04 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=52.3
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..+++.+.+|++|+|++.++..|+.++.. ..++.++||+||+|||||++|+++|+.+.|.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~----~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRM----DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34577889999999999999999998743 3556789999999999999999999999874
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.2e-10 Score=130.53 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=53.6
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
.+..++.+..|++|+|++.+++.|..++.. ..++.++||+||+|+|||++|+++|+.+.|..
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~----gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET----GRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 345678889999999999999999998854 34567899999999999999999999998753
No 123
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=7.6e-11 Score=101.79 Aligned_cols=57 Identities=42% Similarity=0.521 Sum_probs=46.1
Q ss_pred cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204 224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS 285 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~ 285 (577)
+|.+.+.+.+..++..+ ....++++||||||||++++.++..+ +.+++.+++.+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-----~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELP-----PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 36777788888877442 23579999999999999999999998 88999999876543
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.4e-10 Score=129.59 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=51.4
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+.+++.+.+|++|+|++.+++.|...+... .+...+||+||+|+|||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG----RVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 346788899999999999999999988542 345678999999999999999999998753
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-10 Score=126.65 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=52.0
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.+..++.+..|++|+|++.+...|...+.. ..+...+|||||+|+|||++|+++|+.+.+
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~----~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKL----QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 466778889999999999999999999854 234567899999999999999999999876
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=3.4e-10 Score=125.51 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=51.3
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..++.+.+|++|+|++.+++.|...+.. ..++..+|||||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~----grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN----NRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 45678889999999999999999999853 345667899999999999999999999854
No 127
>KOG0745|consensus
Probab=99.24 E-value=2.2e-11 Score=130.76 Aligned_cols=54 Identities=31% Similarity=0.455 Sum_probs=48.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccch-HHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGES-EKLVRLLFEM 301 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~~-e~~vr~lF~~ 301 (577)
.+|||.||+|+|||+||+-||+.+++||...+|..|+. +|+|++ |..+..|+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~ 282 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQE 282 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999986 899999 6667777765
No 128
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.22 E-value=2.5e-10 Score=130.57 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=55.5
Q ss_pred hhhhcCCCCCcccccCcHHHHH---HHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKA---ILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~---~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
++..++.+.++++++|++.... .|.+++.. ....++|||||||||||++|+++|+.++.+|+.+++.
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 5666778889999999999885 56666643 2235799999999999999999999999999888875
No 129
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=1e-09 Score=110.87 Aligned_cols=59 Identities=22% Similarity=0.153 Sum_probs=51.1
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..|.+++.+.+|++++|++++++.|..++..+- ..++||+||||||||++|+++++++.
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~-----~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKN-----MPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 368889999999999999999999999985421 23589999999999999999999974
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.20 E-value=9.5e-10 Score=111.03 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=32.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
..+||+||||||||++|++||+.+|.+|+.++|..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 47999999999999999999999999999999875
No 131
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.20 E-value=2.7e-10 Score=124.17 Aligned_cols=141 Identities=25% Similarity=0.312 Sum_probs=107.5
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccccccccchHHH
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTSKYRGESEKL 294 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~e~~ 294 (577)
....+++|...+.+.|.+.+..- . ..--.||++|++||||-.+||+|.+... .||+.|+|..+.. .+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-A--~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-------~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-A--PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-------NL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-h--CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-------HH
Confidence 45779999999999999988321 1 1124699999999999999999998875 5999999998743 34
Q ss_pred HH-HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCC
Q psy16204 295 VR-LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG 373 (577)
Q Consensus 295 vr-~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (577)
+. ++|.. .+|+||++.....|.
T Consensus 208 ~ESELFGh----------------------------------------ekGAFTGA~~~r~G~----------------- 230 (464)
T COG2204 208 LESELFGH----------------------------------------EKGAFTGAITRRIGR----------------- 230 (464)
T ss_pred HHHHhhcc----------------------------------------cccCcCCcccccCcc-----------------
Confidence 43 46653 479999999888866
Q ss_pred CcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh-
Q psy16204 374 PWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD- 452 (577)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD- 452 (577)
|+.+.+| +||||||..+.. .++..||..+.
T Consensus 231 -----------fE~A~GG--------------------------TLfLDEI~~mpl------------~~Q~kLLRvLqe 261 (464)
T COG2204 231 -----------FEQANGG--------------------------TLFLDEIGEMPL------------ELQVKLLRVLQE 261 (464)
T ss_pred -----------eeEcCCc--------------------------eEEeeccccCCH------------HHHHHHHHHHHc
Confidence 4444444 999999998876 67888888876
Q ss_pred ----CCCCCcCCCceEEEEEecCCch
Q psy16204 453 ----GLNSSLYEDKIIMILAATNHPY 474 (577)
Q Consensus 453 ----~~~~~~~~~~~VlIIatTN~p~ 474 (577)
.+.++..-.-+|-||+|||..-
T Consensus 262 ~~~~rvG~~~~i~vdvRiIaaT~~dL 287 (464)
T COG2204 262 REFERVGGNKPIKVDVRIIAATNRDL 287 (464)
T ss_pred CeeEecCCCcccceeeEEEeecCcCH
Confidence 3555443445799999999763
No 132
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.19 E-value=1.2e-10 Score=111.06 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=42.3
Q ss_pred ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
|+|.+.+.+.+.+.+..-...+ ..|||+|++||||+.+|++|.+... .||+.|+|+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~---~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD---LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST---S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHHhCCC---CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 5677777777776664322222 6799999999999999999998764 79999999977
No 133
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.18 E-value=8.3e-11 Score=105.97 Aligned_cols=37 Identities=32% Similarity=0.387 Sum_probs=32.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+|||+||||||||++|+.+|+.++.+++.+.++..++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 5899999999999999999999999999999986543
No 134
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.18 E-value=3.7e-09 Score=121.93 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=50.2
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccce-eEEecCCCCChHHHHHHHHHHhC----------CeEEEEecCccc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKE-ALERHSHGTGKTMLAKAVATECG----------TTFFNVSSSTLT 284 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~-ILL~GPpGtGKT~LAkaLA~el~----------~~fv~v~~s~l~ 284 (577)
-+.|.|.++.++.|..+|.--+... .+.+ ++++|+||||||.+++.+.+++. +.+++|+|..+.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 3689999999999999986555432 2334 46999999999999999987762 567899997653
No 135
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.16 E-value=3.5e-10 Score=121.49 Aligned_cols=182 Identities=20% Similarity=0.219 Sum_probs=128.4
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCccccccccchHH
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTLTSKYRGESEK 293 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l~~k~~G~~e~ 293 (577)
..+.+++|.+...+.+.+.+.. .+..-..||++|++||||+.+|++|+... +.||+.|+|+.+.+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~------ 145 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL------ 145 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH------
Confidence 4678999999988888888854 22233579999999999999999998554 4699999999986542
Q ss_pred HHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCC
Q psy16204 294 LVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG 373 (577)
Q Consensus 294 ~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (577)
..-++|.. .+|+||++.....|.
T Consensus 146 ~~~eLFG~----------------------------------------~kGaftGa~~~k~Gl----------------- 168 (403)
T COG1221 146 QEAELFGH----------------------------------------EKGAFTGAQGGKAGL----------------- 168 (403)
T ss_pred HHHHHhcc----------------------------------------ccceeecccCCcCch-----------------
Confidence 12236654 579999987777765
Q ss_pred CcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204 374 PWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG 453 (577)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~ 453 (577)
|+++.+| +||+|||..+.. ..+..||..||.
T Consensus 169 -----------fe~A~GG--------------------------tLfLDEI~~LP~------------~~Q~kLl~~le~ 199 (403)
T COG1221 169 -----------FEQANGG--------------------------TLFLDEIHRLPP------------EGQEKLLRVLEE 199 (403)
T ss_pred -----------heecCCC--------------------------EEehhhhhhCCH------------hHHHHHHHHHHc
Confidence 4444444 999999999987 457788888885
Q ss_pred -----CCCCcCCCceEEEEEecCCc--hhhHH--Hhhc-CcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy16204 454 -----LNSSLYEDKIIMILAATNHP--YQLLT--LCLE-GVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRR 521 (577)
Q Consensus 454 -----~~~~~~~~~~VlIIatTN~p--~~L~~--allr-r~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr 521 (577)
+++......+|.+|+|||.. +.+.. -+.+ +..+ .|.+..|.++ ..||..++..=.....++
T Consensus 200 g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~--~I~LPpLrER-----~~Di~~L~e~Fl~~~~~~ 270 (403)
T COG1221 200 GEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL--TITLPPLRER-----KEDILLLAEHFLKSEARR 270 (403)
T ss_pred CceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc--eecCCChhhc-----hhhHHHHHHHHHHHHHHH
Confidence 44444455679999998743 23444 4444 4333 5677777775 467777776554444444
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.16 E-value=8.9e-10 Score=117.15 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=46.2
Q ss_pred CCCccc-ccCcHH--HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204 217 NVQWNK-VAGLTE--AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT 284 (577)
Q Consensus 217 ~v~~~d-IiG~~~--ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~ 284 (577)
..++++ ++|... +...+.++...| ...+..++||||+|+|||+|++++++++ +..++++++.++.
T Consensus 106 ~~tfd~fi~g~~n~~a~~~~~~~~~~~---~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 106 KYTFDNFVVGKSNRLAHAAALAVAENP---GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCcccccccCCcHHHHHHHHHHHHhCc---CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 346666 445433 455555555543 2345679999999999999999999987 5778888876653
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1e-09 Score=123.65 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=52.2
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+.+|++|+|++.+++.|..++.. ..+...+|||||+|+|||++|+++|+.+.|.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678889999999999999999999854 3455779999999999999999999998764
No 138
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.14 E-value=7.1e-10 Score=120.70 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=39.7
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
++++.+.++..+.+...+.. .++++|+||||||||++|+.+|..+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~-------~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI-------KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56788888888888887753 268999999999999999999998753
No 139
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.14 E-value=7.2e-10 Score=119.72 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=46.7
Q ss_pred CCCcccc-cCc--HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204 217 NVQWNKV-AGL--TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT 284 (577)
Q Consensus 217 ~v~~~dI-iG~--~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~ 284 (577)
..+|++. +|. ..+...+.+....| ...++.++||||+|+|||+|++++++++ +..++++++.+++
T Consensus 118 ~~tfd~fv~g~~n~~a~~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 118 KYTFDNFVVGKSNRLAHAAALAVAENP---GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CCcccccccCCCcHHHHHHHHHHHhCc---CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 3456663 343 33666666666554 2345679999999999999999999997 5668888887654
No 140
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.10 E-value=2e-10 Score=119.13 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=48.5
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
..++|.++++..+..++... ..+||.||||||||++|+.+|+.++.+|+++.|..-+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~-------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG-------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC-------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 33788888888877777443 5799999999999999999999999999999998543
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.07 E-value=2.2e-09 Score=120.91 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=54.1
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecC
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSS 281 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s 281 (577)
.....+..+++|+|++.+...+...+..+ .+..+||+||||||||++|++++..+ +.+|+.++|.
T Consensus 145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~-----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 145 QSLLRPRAFSEIVGQERAIKALLAKVASP-----FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred hhhcCcCcHHhceeCcHHHHHHHHHHhcC-----CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 34456678999999999999888777443 23579999999999999999998765 3578999987
Q ss_pred cc
Q psy16204 282 TL 283 (577)
Q Consensus 282 ~l 283 (577)
.+
T Consensus 220 ~l 221 (615)
T TIGR02903 220 TL 221 (615)
T ss_pred hc
Confidence 65
No 142
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.06 E-value=2.2e-09 Score=118.30 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
...+++++|...+.+.+.+.+..-.. ....|||+|++||||+++|++|+... +.||+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR---SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 35788999999999988888744221 22479999999999999999999885 4799999999773
No 143
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.04 E-value=4.6e-09 Score=109.91 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=44.2
Q ss_pred ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
|+|...+.+.+.+.+..-. ..-..|||+|++||||+++|++|..... .||+.|+|..+.
T Consensus 1 liG~S~~m~~~~~~~~~~a---~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA---PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 4666666666666653311 1225799999999999999999987764 799999999763
No 144
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.4e-09 Score=110.67 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=57.6
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe-----EEEEecCccccccccchHHHH
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT-----FFNVSSSTLTSKYRGESEKLV 295 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~-----fv~v~~s~l~~k~~G~~e~~v 295 (577)
+++.+.++.++.|..++.- ......+.++++||+||||||.+++-+++++.-. +++|+|-.+.+.| ..+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~-~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~-----~i~ 90 (366)
T COG1474 17 EELPHREEEINQLASFLAP-ALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY-----QVL 90 (366)
T ss_pred ccccccHHHHHHHHHHHHH-HhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH-----HHH
Confidence 4589999999999998754 4444556679999999999999999999998644 8999998764432 344
Q ss_pred HHHHHH
Q psy16204 296 RLLFEM 301 (577)
Q Consensus 296 r~lF~~ 301 (577)
..++.+
T Consensus 91 ~~i~~~ 96 (366)
T COG1474 91 SKILNK 96 (366)
T ss_pred HHHHHH
Confidence 455543
No 145
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.03 E-value=5.9e-09 Score=110.43 Aligned_cols=80 Identities=25% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHH
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLV 295 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~v 295 (577)
..-+-++||.+|.+..--.+..-.....--++|||.||||||||.||-+||+++| .||+.++++++.+.-+..+|.+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~ 115 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALT 115 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHH
Confidence 3457889999998865444433222222237999999999999999999999998 89999999999776666666554
Q ss_pred HH
Q psy16204 296 RL 297 (577)
Q Consensus 296 r~ 297 (577)
+.
T Consensus 116 qa 117 (450)
T COG1224 116 QA 117 (450)
T ss_pred HH
Confidence 43
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.00 E-value=7.3e-09 Score=112.39 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCCccccc-CcHH--HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204 216 PNVQWNKVA-GLTE--AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL 283 (577)
Q Consensus 216 ~~v~~~dIi-G~~~--ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l 283 (577)
+..+|++.+ |... +...+.+....| ..++.++||||+|+|||.|++++|+++ +..++++++.++
T Consensus 100 ~~~tFdnFv~g~~n~~a~~~~~~~~~~~----~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 100 PDYTFENFVVGPGNSFAYHAALEVAKNP----GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CCCcccccccCCchHHHHHHHHHHHhCc----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 445677766 5433 334444444332 235689999999999999999999986 457788887654
No 147
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.00 E-value=1.5e-09 Score=122.01 Aligned_cols=84 Identities=24% Similarity=0.237 Sum_probs=65.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe----EEEEecCc------c
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT----FFNVSSST------L 283 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~----fv~v~~s~------l 283 (577)
+.|...+++|+|+++++..|..++..+ .+++|+||||||||++|+++|+.++.. ++++.-+. +
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~-------~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~ 83 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQK-------RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRI 83 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcC-------CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHH
Confidence 345578999999999999999988653 389999999999999999999999754 22333222 2
Q ss_pred ccccccchHHHHHHHHHHhhh
Q psy16204 284 TSKYRGESEKLVRLLFEMVSF 304 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~a~~ 304 (577)
...+.|..++.++..|..|..
T Consensus 84 ~~v~~~~g~~~~~~~~~~~~~ 104 (608)
T TIGR00764 84 VEVPAGEGREIVEDYKKKAFK 104 (608)
T ss_pred HHHHHhhchHHHHHHHHHhhc
Confidence 335667888999999987643
No 148
>KOG1969|consensus
Probab=98.99 E-value=4.2e-09 Score=118.89 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=64.8
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHC------------------------------cCCCccccceeEEecCCCC
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVL------------------------------PTIMPEFFKEALERHSHGT 258 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~------------------------------pl~~~~~~k~ILL~GPpGt 258 (577)
+.|+.++.+..|.|+.|-+.+-+++.-.|.. |..+| ..+-+||+||||-
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP-~kKilLL~GppGl 337 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRP-PKKILLLCGPPGL 337 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCC-ccceEEeecCCCC
Confidence 4788899999999999988888777665521 11111 0145799999999
Q ss_pred ChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHH
Q psy16204 259 GKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 259 GKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~ 301 (577)
|||+||+.||+.+|..+++|++++-. +...|++..+.
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~ 374 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIEN 374 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHH
Confidence 99999999999999999999999863 34555554443
No 149
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=8.8e-09 Score=106.07 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=44.3
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.|++|+|++.+++.|...+.. ..++..+||+||+|+|||++|+++|+.+-|
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~----~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK----NRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc----CCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 589999999999999998843 355578899999999999999999998754
No 150
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.98 E-value=1.3e-08 Score=113.30 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=51.7
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH-----------hCCeEEEEecCccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE-----------CGTTFFNVSSSTLT 284 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e-----------l~~~fv~v~~s~l~ 284 (577)
.+++|+|...+.+.+.+.+..-- .....|||+|++||||+++|++|... .+.||+.++|..+.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A---~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA---RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh---CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 57889999999998888874311 12257999999999999999999987 45799999999874
No 151
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.97 E-value=2.3e-09 Score=112.59 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+.|||.||||||||++|+.||+.++.++++|++...++
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~ 102 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVS 102 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 57999999999999999999999999999999987655
No 152
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.96 E-value=9.2e-09 Score=99.34 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCccccc--CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 218 VQWNKVA--GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 218 v~~~dIi--G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
.++++++ +.+.+++.+++.+.. .....++|+||+|||||++|+++++++ +.++++++|..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-----KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3455554 567788888887632 234689999999999999999999887 4688888887653
No 153
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.96 E-value=5.2e-09 Score=105.52 Aligned_cols=49 Identities=24% Similarity=0.093 Sum_probs=39.0
Q ss_pred cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+++|.+.+...+...+.. ..+.+..+||+||||+|||++|.++|+++.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~---~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---SGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHh---cCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 577888888887777742 2234457999999999999999999999873
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.96 E-value=1.3e-08 Score=110.69 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCCCccccc-CcH--HHHHHHHHHHHCcCCC-ccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 216 PNVQWNKVA-GLT--EAKAILQEAMVLPTIM-PEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 216 ~~v~~~dIi-G~~--~ak~~L~e~l~~pl~~-~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+..+|++.+ |.. .+...+.++...+-.. ...++.++||||+|+|||+|++++++++ +..++++++.++
T Consensus 106 ~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 106 PLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred ccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 445677665 433 2334555554433211 2345789999999999999999999886 577788877654
No 155
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=5.1e-08 Score=103.77 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=47.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.+..+++|+|++.+++.|.+++... .++.++||+||+|+||+++|.++|+.+-|
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG----RLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4568999999999999999998553 45578999999999999999999999754
No 156
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.94 E-value=5.3e-10 Score=103.69 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=24.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+|||+|+||+|||++|+++|+.++..|.+|.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 489999999999999999999999999999885
No 157
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.93 E-value=1.8e-08 Score=111.86 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=52.2
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
..+++|+|...+.+.+.+.+..-- .....|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A---~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA---RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh---CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 458899999999998888874311 122579999999999999999999875 4799999999774
No 158
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.93 E-value=1.4e-08 Score=106.03 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=49.5
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
.+++++|...+.+.+.+.+..-. .....|||+|++||||+.+|++|..... .||+.++|..+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a---~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA---PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC
Confidence 35678999988888888774422 1225799999999999999999997654 69999999976
No 159
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.92 E-value=3.6e-08 Score=108.48 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=52.0
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
...+|+|...+.+.+.+.+..-- .....|||+|++||||+.+|++|.... +.+|+.|+|..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a---~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA---ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh---CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 56789999999998888885421 223579999999999999999999885 4799999999774
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=8.3e-09 Score=87.67 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=32.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCe---EEEEecCcccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTT---FFNVSSSTLTS 285 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~---fv~v~~s~l~~ 285 (577)
..++|+||||||||++++.+|..+... ++++++.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 468999999999999999999999875 88888876543
No 161
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.90 E-value=4.2e-08 Score=95.86 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCCCccccc--CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 216 PNVQWNKVA--GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 216 ~~v~~~dIi--G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
++.++++++ +.+.+...+++.... ......++|+||+|||||+||+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~----~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG----PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 345677766 446777777776642 1223579999999999999999999876 567888887653
No 162
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.88 E-value=2.1e-08 Score=95.39 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcc
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV 485 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~ 485 (577)
...||||||+|.+.. ..++.||..|+... +++++|.+||.++.|++++..+..
T Consensus 96 ~~kviiide~~~l~~------------~~~~~Ll~~le~~~------~~~~~il~~~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 96 GRRVVIIEDAERMNE------------AAANALLKTLEEPP------PNTLFILITPSPEKLLPTIRSRCQ 148 (188)
T ss_pred CeEEEEEechhhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChHhChHHHHhhcE
Confidence 456999999999865 34678999998744 345677777888889888887664
No 163
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.88 E-value=8.1e-09 Score=108.76 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=43.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
....|++|+|++++++.|.-++..+- ..++||+|+||||||++||++|.-+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~-----~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPG-----IGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccC-----CCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 34679999999999998887664321 14799999999999999999999983
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.86 E-value=1.6e-08 Score=102.73 Aligned_cols=69 Identities=25% Similarity=0.270 Sum_probs=55.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
....+.+++++|.+..|+.|.+-...-+. .....++||||++|||||+++|++..++ |..++.|...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~-G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ-GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc-CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 44568899999999999999887754332 3345789999999999999999999876 567788877665
No 165
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.86 E-value=4.4e-08 Score=108.27 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=51.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
....+++++|...+.+.+.+.+..- ......|||+|++||||+++|+++..... .||+.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~---A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL---AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH---hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4568999999998877777666321 11224699999999999999999987653 699999999764
No 166
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.85 E-value=2.4e-08 Score=106.56 Aligned_cols=81 Identities=25% Similarity=0.219 Sum_probs=56.5
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHHHH
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRL 297 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~vr~ 297 (577)
-+.++||.+|++..--.+.+-....---+++||.||||||||.||-++|+++| +||+.++++++.+.-+..+|. +.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~q 101 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQ 101 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHH
Confidence 46899999999877665544222222237899999999999999999999998 899999999997765555554 445
Q ss_pred HHHH
Q psy16204 298 LFEM 301 (577)
Q Consensus 298 lF~~ 301 (577)
.|..
T Consensus 102 a~Rr 105 (398)
T PF06068_consen 102 AFRR 105 (398)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5653
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=3.4e-08 Score=111.15 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=45.4
Q ss_pred CCCCccccc-CcHH--HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcccc
Q psy16204 216 PNVQWNKVA-GLTE--AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLTS 285 (577)
Q Consensus 216 ~~v~~~dIi-G~~~--ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~~ 285 (577)
+..+|++++ |... +...+..++..+ ...++.++|||++|+|||.|+.+|++++ +..++++++.++.+
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~ 357 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN 357 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 345677765 4332 333444444332 2234569999999999999999999987 46788888876643
No 168
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=6.1e-08 Score=96.06 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=34.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+..++++++|..... .+..+..... ... ..++||||||||||.|+.++|+++
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFI---DLQQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhh---ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456888888765432 1221111111 112 357999999999999999999986
No 169
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.85 E-value=5.6e-09 Score=103.50 Aligned_cols=46 Identities=33% Similarity=0.368 Sum_probs=38.6
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+|++|+||+.+|..|.-+.... .++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~-------h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG-------HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC---------EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcCC-------CCeEEECCCCCCHHHHHHHHHHhC
Confidence 4789999999999999998763 599999999999999999999764
No 170
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2e-07 Score=98.79 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.+..+++|+|++++++.|..++... ..+..+||+||+|+|||++|+.+|+.+.+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g----rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG----KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC----CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4467899999999999999998543 45578999999999999999999999876
No 171
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.82 E-value=9.4e-08 Score=108.60 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=51.3
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
..+++++|...+.+.+.+.+..-. .....|||+|++|||||++|++|.... +.+|+.++|..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a---~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA---QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 438 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh---CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccC
Confidence 567899999999998887775321 122479999999999999999999865 479999999876
No 172
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.81 E-value=2e-08 Score=106.54 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
...|++|+||+++|..|.-.+..|. ..++||.|++|||||++||++++.+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~-----~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPK-----IGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCC-----CCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3479999999999999998887653 25899999999999999999988774
No 173
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.81 E-value=3.6e-08 Score=108.41 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=44.0
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC--eEEEEecC
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT--TFFNVSSS 281 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s 281 (577)
-+.|+|++++++.+..++... .+|||+||||||||++|++||..++. +|..+.+.
T Consensus 19 ~~~i~gre~vI~lll~aalag-------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ 75 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 75 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC-------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence 367899999999988888432 47999999999999999999998753 55555443
No 174
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.80 E-value=2.7e-08 Score=105.88 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=67.5
Q ss_pred Ccc-cccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHhCC-------eEEEEec----Ccccc
Q psy16204 219 QWN-KVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATECGT-------TFFNVSS----STLTS 285 (577)
Q Consensus 219 ~~~-dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el~~-------~fv~v~~----s~l~~ 285 (577)
-|+ +++|++++++.|.+++........ ..+.++|+||||+|||+||++||+.++. +++.+.. |...+
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 355 899999999999999865443222 2356899999999999999999999986 9999998 77777
Q ss_pred ccccchHHHHHHHHHH
Q psy16204 286 KYRGESEKLVRLLFEM 301 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~ 301 (577)
...+.....+|..|..
T Consensus 128 ~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 128 DPLHLFPDELREDLED 143 (361)
T ss_pred CCcccCCHHHHHHHHH
Confidence 7777777888877754
No 175
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.80 E-value=1.9e-08 Score=113.74 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=41.0
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
|.+|+||+.++..|.-++..|- ..+|||+|++|||||++|++|++.+
T Consensus 3 f~~ivGq~~~~~al~~~av~~~-----~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPR-----IGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCC-----CCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 6799999999998887776552 1479999999999999999999987
No 176
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.80 E-value=5.6e-08 Score=109.28 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=51.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
...+++++|.+.+.+.+.+.+..-.. ....|||+|++||||+++|++|..... .||+.|+|..+.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK---SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 45689999999888877776643221 224699999999999999999998764 799999999763
No 177
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-07 Score=108.65 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=68.3
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEE
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNV 278 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v 278 (577)
.+..+....-.++-|||.++.++++.+.|..... ++-+|.|+||||||.++..+|... +..++.+
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K-----NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK-----NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC-----CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3444555667899999999999999999865432 466899999999999999999775 3567777
Q ss_pred ecCcccc--ccccchHHHHHHHHHH
Q psy16204 279 SSSTLTS--KYRGESEKLVRLLFEM 301 (577)
Q Consensus 279 ~~s~l~~--k~~G~~e~~vr~lF~~ 301 (577)
+.+.+.. +|.|++|..++.+.+.
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~e 257 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKE 257 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHH
Confidence 7777654 7888888777766665
No 178
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.79 E-value=2.9e-07 Score=104.43 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=46.7
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
...++..|++|+|++++++.|..++..+ ..+||+||||||||++|+++++.+.+
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~~-------~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQR-------RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHhC-------CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3456689999999999999999988653 37999999999999999999998763
No 179
>PHA02244 ATPase-like protein
Probab=98.77 E-value=2.9e-07 Score=98.61 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=30.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
..|||+||||||||++|++||..++.+|+.++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 479999999999999999999999999999873
No 180
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.73 E-value=1.5e-07 Score=101.14 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=48.6
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
.+.+++|...+.+.+.+.+..-. .....+|+.|++|||||++|++|+.... .+|+.++|+.+
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~---~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS---RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI 200 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh---ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC
Confidence 35678998888877777664211 1124699999999999999999998864 69999999877
No 181
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=1.1e-07 Score=89.90 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
|++++++.|...+.. ..++..+||+||+|+||+++|+++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~----~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~ 45 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS----GRLPHALLFHGPSGSGKKTLALAFARALLC 45 (162)
T ss_dssp S-HHHHHHHHHHHHC----TC--SEEEEECSTTSSHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHc----CCcceeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999998854 356678999999999999999999998754
No 182
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.9e-07 Score=99.65 Aligned_cols=47 Identities=32% Similarity=0.310 Sum_probs=41.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..++.||+||+.+|+.|..+.... +++||+||||||||+||+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg-------HnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG-------HNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC-------CcEEEecCCCCchHHhhhhhccc
Confidence 458999999999999999998654 68999999999999999988754
No 183
>PRK15115 response regulator GlrR; Provisional
Probab=98.69 E-value=3.6e-07 Score=97.50 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=42.4
Q ss_pred cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
.++|.......+.+.+..-. ..-..++++|++|||||++|+++..... .+|+.++|..+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a---~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~ 196 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA---QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGAL 196 (444)
T ss_pred cccccCHHHHHHHHHHHhhc---cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCC
Confidence 46666655554444432211 1123689999999999999999998864 79999999976
No 184
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.68 E-value=1.8e-06 Score=86.02 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=42.0
Q ss_pred CCCCccccc--CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecC
Q psy16204 216 PNVQWNKVA--GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSS 281 (577)
Q Consensus 216 ~~v~~~dIi--G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s 281 (577)
+..++++.+ +...+...+......+- ...++||||+|||||+|++++++++. ..+.+++..
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~~-----~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQEH-----SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 344667666 45667777777654331 24799999999999999999998764 334454443
No 185
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=8.9e-08 Score=100.08 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=43.4
Q ss_pred CcccccC-cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 219 QWNKVAG-LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 219 ~~~dIiG-~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.|+.|+| ++.+++.|...+.. ..++..+||+||+|+|||++|+++|+.+-+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK----NRLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4788888 88899999998843 456678899999999999999999999755
No 186
>KOG1942|consensus
Probab=98.68 E-value=3.8e-07 Score=95.09 Aligned_cols=84 Identities=24% Similarity=0.150 Sum_probs=57.9
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHHH
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVR 296 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~vr 296 (577)
.-..++||..|.+..--.+.+-.....--+++||.||||||||.||-+|++++| .||.-+.++++.+.-+-.+|-+ -
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-m 114 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-M 114 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-H
Confidence 456789999998865444332111122236899999999999999999999997 7999888988866544444433 3
Q ss_pred HHHHHhh
Q psy16204 297 LLFEMVS 303 (577)
Q Consensus 297 ~lF~~a~ 303 (577)
+-|..|+
T Consensus 115 enfRRaI 121 (456)
T KOG1942|consen 115 ENFRRAI 121 (456)
T ss_pred HHHHHHh
Confidence 3444443
No 187
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.68 E-value=1.3e-07 Score=104.45 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-------CCcCCCceEEEEEecCCc------h-------
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLYEDKIIMILAATNHP------Y------- 474 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-------~~~~~~~~VlIIatTN~p------~------- 474 (577)
...|||||||+.+.. .++..|++.|+.-. .......++.+|+|+|.- +
T Consensus 295 ~~GvLfLDEi~e~~~------------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c 362 (499)
T TIGR00368 295 HNGVLFLDELPEFKR------------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRC 362 (499)
T ss_pred CCCeEecCChhhCCH------------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccC
Confidence 446999999998754 56777887776422 111123568999999852 1
Q ss_pred ----------hhHHHhhcCccccc---ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy16204 475 ----------QLLTLCLEGVVIDV---NLDFHKISKMLEGYTGSDIANLARDAAMMSIRR 521 (577)
Q Consensus 475 ----------~L~~allrr~~i~~---~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr 521 (577)
.|-..+++||.+.. +++...|.+...|-+-+++..-+..|-.....|
T Consensus 363 ~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R 422 (499)
T TIGR00368 363 SPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIR 422 (499)
T ss_pred CHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 26777888887653 345667776667778888888877775555555
No 188
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=9.5e-08 Score=99.74 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=45.4
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.|++|+|++.+++.|..++... .++.++||+||+|+||+.+|+++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5889999999999999998543 455799999999999999999999997553
No 189
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.68 E-value=9e-08 Score=101.05 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=40.7
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
|..|+|++++|..|.-.+..|- ..++||.|++|+|||+++|+++..+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~-----~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK-----IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC-----CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 6789999999998877775542 2479999999999999999999887
No 190
>PRK05642 DNA replication initiation factor; Validated
Probab=98.67 E-value=8.1e-07 Score=88.60 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
..++||||+|||||.|++++++++ +..++++++.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 678999999999999999999765 4667777776553
No 191
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.64 E-value=5.4e-07 Score=96.20 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=48.0
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
.+.+++|.....+.+.+.+..- . .....++++|++||||+.+|+++..... .+|+.++|..+
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-a--~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~ 201 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-A--PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAI 201 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-h--CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCC
Confidence 3457888888888777766421 1 1124689999999999999999998764 69999999976
No 192
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.64 E-value=2e-06 Score=85.24 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=22.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.++|+||+|+|||++++.++..+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999999876
No 193
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.63 E-value=5.2e-07 Score=96.34 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=45.9
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
.+..++|.......+.+.+..-. ..-..+|++|++||||+++|+++.... +.+|+.++|..+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a---~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA---LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc---CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 34567887766666655542211 112479999999999999999998875 4799999999763
No 194
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.61 E-value=1.1e-06 Score=96.10 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=43.2
Q ss_pred CCccccc-Cc--HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204 218 VQWNKVA-GL--TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT 284 (577)
Q Consensus 218 v~~~dIi-G~--~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~ 284 (577)
.+|++.+ |. ..+...+..+...| ...++.++|||++|+|||.|++++++++ +..++++++.++.
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~---~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNP---GISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCc---CcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4555554 33 22444555544332 2345679999999999999999999965 3677888887654
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=98.61 E-value=1.2e-06 Score=101.92 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204 416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV 484 (577)
Q Consensus 416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~ 484 (577)
..||||||+|.|.. ..++.|+..|+... .++.+|++||.+..|++.+..|.
T Consensus 631 ~KVvIIDEaD~Lt~------------~AQnALLk~lEep~------~~~~FILi~N~~~kIi~tIrSRC 681 (846)
T PRK04132 631 FKIIFLDEADALTQ------------DAQQALRRTMEMFS------SNVRFILSCNYSSKIIEPIQSRC 681 (846)
T ss_pred CEEEEEECcccCCH------------HHHHHHHHHhhCCC------CCeEEEEEeCChhhCchHHhhhc
Confidence 35999999999965 45899999999765 34789999999999887766554
No 196
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.60 E-value=3.5e-06 Score=88.02 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=39.6
Q ss_pred cccCcHHHHH---HHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecC
Q psy16204 222 KVAGLTEAKA---ILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSS 281 (577)
Q Consensus 222 dIiG~~~ak~---~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s 281 (577)
.-||...+++ .|.+.+..|. .....++||+|++|.|||++++..+.... +|++.+.+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~--~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPK--RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCc--ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3466665555 4555555552 23346899999999999999999997653 455666554
No 197
>KOG0991|consensus
Probab=98.60 E-value=7.7e-08 Score=97.66 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=56.6
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCcc
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSSTL 283 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~l 283 (577)
..|+.+|.++.+.||+|.++..+.|.-...-. -..+++|.||||||||+-+.+||.++=. .++++++++-
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~g-----nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEG-----NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcC-----CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 35889999999999999999999998877432 1237999999999999999999999732 3456666653
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=5e-07 Score=94.95 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=42.3
Q ss_pred cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204 414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV 484 (577)
Q Consensus 414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~ 484 (577)
....|++|||+|++.. ...|.||..|+.-. .++++|.+|+.++.|++.++.|.
T Consensus 105 ~~~kv~iI~~a~~m~~------------~aaNaLLK~LEEPp------~~~~fiL~t~~~~~ll~TI~SRc 157 (328)
T PRK05707 105 GGRKVVLIEPAEAMNR------------NAANALLKSLEEPS------GDTVLLLISHQPSRLLPTIKSRC 157 (328)
T ss_pred CCCeEEEECChhhCCH------------HHHHHHHHHHhCCC------CCeEEEEEECChhhCcHHHHhhc
Confidence 3456999999999976 56899999999865 34788899999999887766543
No 199
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.56 E-value=9.4e-07 Score=97.63 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=40.4
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCc----ccc---ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMP----EFF---KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~----~~~---k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
--.|.|++.+|..|.-.+....... ... .+|||+|+||+|||++||++++....
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r 262 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR 262 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc
Confidence 3468999999988877775542111 011 26999999999999999999998653
No 200
>PRK08727 hypothetical protein; Validated
Probab=98.55 E-value=4e-06 Score=83.52 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=37.8
Q ss_pred CCCccccc-CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 217 NVQWNKVA-GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 217 ~v~~~dIi-G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
..++++.+ |...+...+..... ......++||||+|||||.|+.+++.++ +...++++..
T Consensus 15 ~~~f~~f~~~~~n~~~~~~~~~~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 15 DQRFDSYIAAPDGLLAQLQALAA-----GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred cCChhhccCCcHHHHHHHHHHHh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 34566654 44444444443322 1223569999999999999999998775 3455556543
No 201
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.54 E-value=1.5e-06 Score=92.29 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=43.7
Q ss_pred cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
.++|.......+...+..- ......++++|.+||||+.+|+++..... .+|+.++|..+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~---~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~ 202 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV---APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN 202 (441)
T ss_pred ceEecCHHHHHHHHHHhhc---cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC
Confidence 4666666666665554321 11225799999999999999999987654 799999999763
No 202
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.48 E-value=2.3e-06 Score=91.68 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=47.0
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
...++|...+...+.+.+.. +. .....+++.|.+||||+++|+++.... +.+|+.++|..+
T Consensus 133 ~~~lig~s~~~~~v~~~i~~-~a--~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGR-LS--RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI 196 (463)
T ss_pred ccceeecCHHHHHHHHHHHH-Hh--CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC
Confidence 34688888877777776643 11 112468999999999999999999875 469999999876
No 203
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=6e-07 Score=101.89 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=55.8
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..+|.+++.+..+++|+|+++.++.|+.++..-......-+.++|+||||||||++++.+|++++..+.+
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 3479999999999999999999999998875432211112348999999999999999999998865533
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.48 E-value=1.7e-06 Score=88.25 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=54.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
..+.+.+.+|+|.+.+++.|.+-... +.....-++|||||..|+||++|+||+-.+.+ ..+++|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~-F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQ-FAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHH-HHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 34557899999999999998876533 22223347899999999999999999998874 56778877765
No 205
>KOG0741|consensus
Probab=98.48 E-value=1.6e-06 Score=95.79 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=96.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchH----HHHHHHHHHhhhhhccccCcceeeccccCCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE----KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGE 323 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e----~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~ 323 (577)
.++||.||||+|||.||-.+|...+.||+.+=+.+-+ +|-+| ..++.+|+.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~D---------------------- 593 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFED---------------------- 593 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHH----------------------
Confidence 3689999999999999999999999999998766543 33333 235556654
Q ss_pred CCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhh
Q psy16204 324 PTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRI 403 (577)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 403 (577)
T Consensus 594 -------------------------------------------------------------------------------- 593 (744)
T KOG0741|consen 594 -------------------------------------------------------------------------------- 593 (744)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh-----HH
Q psy16204 404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL-----LT 478 (577)
Q Consensus 404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L-----~~ 478 (577)
|.+..-+||++|+|+.|..--.-++ -.++-++..|+..+..... ...+.+|++||+....| ..
T Consensus 594 -------AYkS~lsiivvDdiErLiD~vpIGP--RfSN~vlQaL~VllK~~pp---kg~kLli~~TTS~~~vL~~m~i~~ 661 (744)
T KOG0741|consen 594 -------AYKSPLSIIVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKQPP---KGRKLLIFGTTSRREVLQEMGILD 661 (744)
T ss_pred -------hhcCcceEEEEcchhhhhcccccCc--hhhHHHHHHHHHHhccCCC---CCceEEEEecccHHHHHHHcCHHH
Confidence 6666778999999998875321111 2344566666666665543 34678888888876543 22
Q ss_pred HhhcCccccccc----CHHHHHHHcCCCCHHHHHHHHHH
Q psy16204 479 LCLEGVVIDVNL----DFHKISKMLEGYTGSDIANLARD 513 (577)
Q Consensus 479 allrr~~i~~~v----dl~~LA~~t~G~sgsDI~~l~~~ 513 (577)
.+.....+. ++ ++.++-..+.-|+..++..+...
T Consensus 662 ~F~~~i~Vp-nl~~~~~~~~vl~~~n~fsd~~~~~~~~~ 699 (744)
T KOG0741|consen 662 CFSSTIHVP-NLTTGEQLLEVLEELNIFSDDEVRAIAEQ 699 (744)
T ss_pred hhhheeecC-ccCchHHHHHHHHHccCCCcchhHHHHHH
Confidence 222222111 11 45566666677887777666544
No 206
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=88.89 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
|+..++..+..++..-.. -..+++|+||||||||.||.+||+++ +..++++...+++
T Consensus 82 ~~~~a~~~a~~~a~~~~~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 82 GQRYALSQAKSIADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred hHHHHHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 555566666666543211 23689999999999999999999987 4566667666543
No 207
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.45 E-value=1.8e-06 Score=85.53 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=45.6
Q ss_pred CCCCccccc-C--cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204 216 PNVQWNKVA-G--LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT 284 (577)
Q Consensus 216 ~~v~~~dIi-G--~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~ 284 (577)
++-+|++.+ | .+.+...+......+- ..+..++||||+|+|||.|..++++++ +..++++++.++.
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI 76 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence 456777774 5 4555555555554432 244678999999999999999999875 4678888887654
No 208
>PRK06620 hypothetical protein; Validated
Probab=98.42 E-value=3.1e-06 Score=83.80 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=36.9
Q ss_pred CCCCcccccCc---HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 216 PNVQWNKVAGL---TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 216 ~~v~~~dIiG~---~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..++++++-- ..+...+++....+-.. .....++||||||||||+|++++++..+.
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~-~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCGFGVN-PYKFTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHccccC-CCcceEEEECCCCCCHHHHHHHHHhccCC
Confidence 44466665433 34555666554322111 11257999999999999999999988765
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=2e-06 Score=75.76 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=29.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh--------CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC--------GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el--------~~~fv~v~~s~l 283 (577)
+.++++|++|+|||++++.+++.+ ..+++.+++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 458999999999999999999998 788888888754
No 210
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.39 E-value=8.8e-07 Score=99.69 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=45.1
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-------CCcCCCceEEEEEecCCch---hhHHHhhcCc
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLYEDKIIMILAATNHPY---QLLTLCLEGV 484 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-------~~~~~~~~VlIIatTN~p~---~L~~allrr~ 484 (577)
+..|||||||+.+.+ .+++.|++.|+.-. .......++.||||+|..+ .|...++.||
T Consensus 84 ~~GvL~lDEi~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf 151 (589)
T TIGR02031 84 PRGVLYVDMANLLDD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRL 151 (589)
T ss_pred CCCcEeccchhhCCH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhc
Confidence 346999999999976 67888999887422 1112335688999999876 5888899988
Q ss_pred ccc
Q psy16204 485 VID 487 (577)
Q Consensus 485 ~i~ 487 (577)
.+.
T Consensus 152 ~l~ 154 (589)
T TIGR02031 152 ALH 154 (589)
T ss_pred cCe
Confidence 773
No 211
>PRK08116 hypothetical protein; Validated
Probab=98.39 E-value=9.5e-07 Score=90.21 Aligned_cols=60 Identities=30% Similarity=0.211 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
+...++..+.+++..-........+++|||++|||||.||.+||+++ +.++++++..+++
T Consensus 92 ~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 92 GSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 34445566666654211111122479999999999999999999986 6788888876653
No 212
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.38 E-value=1.1e-05 Score=89.62 Aligned_cols=48 Identities=27% Similarity=0.177 Sum_probs=38.3
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..+.++.|+..+++.+.-.+.. -..++|+||||+|||++++.|+..+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~-------G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAG-------GHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred cCeEEEECcHHHHhhhheeccC-------CcEEEEECCCCCcHHHHHHHHhccCC
Confidence 4788999999888876544421 25799999999999999999997653
No 213
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.1e-06 Score=93.05 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=48.8
Q ss_pred CcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhH
Q psy16204 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLL 477 (577)
Q Consensus 398 ~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~ 477 (577)
++...+.+.+-........-|++||++|.+.. ...|.||..++.-. .++++|.+|+.|+.|+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~LL 176 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------AAANALLKTLEEPP------PGTVFLLVSARIDRLL 176 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCH------------HHHHHHHHHhcCCC------cCcEEEEEECChhhCc
Confidence 33344443332223334557999999999976 55899999999755 4588999999999988
Q ss_pred HHhhcCc
Q psy16204 478 TLCLEGV 484 (577)
Q Consensus 478 ~allrr~ 484 (577)
+.++.|.
T Consensus 177 pTI~SRc 183 (342)
T PRK06964 177 PTILSRC 183 (342)
T ss_pred HHHHhcC
Confidence 7766553
No 214
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.36 E-value=2.8e-07 Score=75.40 Aligned_cols=35 Identities=46% Similarity=0.923 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q psy16204 541 LPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575 (577)
Q Consensus 541 ~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~ 575 (577)
.+|+.+||.+||++++|||+.+||.+|++|+++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999999
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.35 E-value=2.4e-06 Score=86.57 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCccccc----CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 218 VQWNKVA----GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 218 v~~~dIi----G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
.+|++.. ++..++..+.+++... .....+++|+|+||||||+||.+||.++ +..++.++..++.
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~---~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEF---DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhh---ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 4455443 3445666666665321 1123589999999999999999999998 6677777766553
No 216
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.34 E-value=1.2e-05 Score=87.20 Aligned_cols=50 Identities=28% Similarity=0.297 Sum_probs=40.9
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..+.-|.|++..|..|--..+.|. ..++|+.|+.|+|||+++|+||.-|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~-----iggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ-----IGGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc-----cceeEEecCCCccHHHHHHHHHHhCC
Confidence 458899999999987765544432 25899999999999999999999885
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.1e-05 Score=85.10 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=41.0
Q ss_pred cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204 414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG 483 (577)
Q Consensus 414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr 483 (577)
...-|++||++|+|.. ...|.||+.|+.-. .++++|..|+.++.|++.+..|
T Consensus 107 g~~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 107 GGAKVVWLPDAALLTD------------AAANALLKTLEEPP------ENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred CCceEEEEcchHhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChhhChHHHHhc
Confidence 3456999999999976 55899999999865 4578888888898877665443
No 218
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=5.7e-06 Score=87.22 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=40.9
Q ss_pred cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204 414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG 483 (577)
Q Consensus 414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr 483 (577)
...-|++||++|+|.. ...|.||..++.-. .++++|.+|+.++.|++.++.|
T Consensus 106 g~~KV~iI~~a~~m~~------------~AaNaLLKtLEEPp------~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 106 GGNKVVYIQGAERLTE------------AAANALLKTLEEPR------PNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred CCceEEEEechhhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChHhCchHHHhh
Confidence 3446999999999976 55899999999866 4578888888898887665543
No 219
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=1.3e-06 Score=80.91 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=40.7
Q ss_pred ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe---EEEEecCcc
Q psy16204 223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT---FFNVSSSTL 283 (577)
Q Consensus 223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~---fv~v~~s~l 283 (577)
++|.++..+.|..++. .......+.++++|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~--~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD--AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG--GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH--HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6899999999999985 2333444789999999999999999888777543 777777655
No 220
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=7.4e-06 Score=73.15 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=28.4
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
++++|+||+|||+++..++..+ +.++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 6899999999999999999887 467777777543
No 221
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.26 E-value=8.5e-07 Score=80.89 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=35.1
Q ss_pred cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC---eEEEEecCc
Q psy16204 224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT---TFFNVSSST 282 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~---~fv~v~~s~ 282 (577)
+|...+.+.+.+.+..-. .....|||+|++||||+++|++|+...+. +|+.++|..
T Consensus 1 vG~S~~~~~l~~~l~~~a---~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA---KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH---CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC
T ss_pred CCCCHHHHHHHHHHHHHh---CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh
Confidence 355555666666553211 12246999999999999999999987653 555555543
No 222
>KOG1514|consensus
Probab=98.26 E-value=3.9e-05 Score=87.31 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=46.1
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----------CeEEEEecCcccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----------TTFFNVSSSTLTS 285 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----------~~fv~v~~s~l~~ 285 (577)
+.+-+.+...+.|..++..-+........+.+.|.||||||.+++.+-+++. ..|+.|++-.+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 4456667777777777755443322234578899999999999999998774 4677788776643
No 223
>PRK08181 transposase; Validated
Probab=98.25 E-value=3.1e-06 Score=86.99 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=29.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
.+++|+||||||||.||.+|+.++ |..+++++..++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 589999999999999999999765 566777776554
No 224
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.2e-05 Score=84.53 Aligned_cols=44 Identities=20% Similarity=0.061 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
++.+.+.|...+. ...++.++||+||+|+||+++|.++|+.+-|
T Consensus 9 ~~~~~~~l~~~~~----~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 9 QQRAYDQTVAALD----AGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred HHHHHHHHHHHHH----cCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 5667777777764 3356678999999999999999999999866
No 225
>KOG2680|consensus
Probab=98.24 E-value=1.8e-05 Score=83.12 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=54.4
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHH
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLV 295 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~v 295 (577)
.-+..+||-.|.+..--.+.. ++..+ --+.+|+.|+||+|||.+|-.+++.+| .||..+.++++.+--...+|.+.
T Consensus 38 ~s~GmVGQ~~AR~Aagvi~km-i~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAlt 116 (454)
T KOG2680|consen 38 VSEGMVGQVKARKAAGVILKM-IREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALT 116 (454)
T ss_pred ccccchhhHHHHHHhHHHHHH-HHcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHHH
Confidence 345678887777643332221 11122 126799999999999999999999998 69999999998765555555544
Q ss_pred H
Q psy16204 296 R 296 (577)
Q Consensus 296 r 296 (577)
+
T Consensus 117 Q 117 (454)
T KOG2680|consen 117 Q 117 (454)
T ss_pred H
Confidence 3
No 226
>KOG2227|consensus
Probab=98.24 E-value=0.00012 Score=80.46 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=50.5
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----C-eEEEEecCcccc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----T-TFFNVSSSTLTS 285 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----~-~fv~v~~s~l~~ 285 (577)
-..+.|.+...+.+++++..++.. +...++.+.|-||+|||.+...+-..+. . ..++++|..+..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~-~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL-NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc-ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 467899999999999999887643 2335789999999999999887765553 2 458899987643
No 227
>PRK06526 transposase; Provisional
Probab=98.21 E-value=2.1e-06 Score=87.33 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.7
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..+++|+||||||||.||.+|+.++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3689999999999999999999875
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.20 E-value=9.4e-06 Score=84.72 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+...+.....+++..... ....+|++|+||+|||||.||.+||+++ |..+..+...++
T Consensus 135 ~~~~~~~~~~~fi~~~~~-~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP-GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 344444444455432111 1234799999999999999999999998 567777776654
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.19 E-value=9.9e-06 Score=82.35 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
...+...+..+..+-- ...+++|+||||||||.||-||+.++ |..++.+...+++
T Consensus 88 ~~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~ 145 (254)
T COG1484 88 DKKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL 145 (254)
T ss_pred hHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4444555555542211 34799999999999999999999987 5777888877664
No 230
>PF13173 AAA_14: AAA domain
Probab=98.18 E-value=7.7e-06 Score=73.69 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=31.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l 283 (577)
+.++|+||+|||||++++.+++.+. -.++++++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 3579999999999999999999887 78888888765
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.16 E-value=1.2e-05 Score=84.98 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 227 TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 227 ~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
..+++....++..... ...+++|+||+|||||.||.+||+++ |..+++++..++.
T Consensus 166 ~~~~~~~~~f~~~f~~---~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~ 223 (329)
T PRK06835 166 EKILEKCKNFIENFDK---NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI 223 (329)
T ss_pred HHHHHHHHHHHHHHhc---cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH
Confidence 3445555555543211 22689999999999999999999987 6778888877653
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=98.14 E-value=3.2e-06 Score=85.88 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=28.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
.+++|+||||||||+||.+|+.++ |..+.++++.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 579999999999999999998664 556666665543
No 233
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=2.2e-05 Score=78.30 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=34.9
Q ss_pred CCCCcccccC---cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 216 PNVQWNKVAG---LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 216 ~~v~~~dIiG---~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++++.+. ...+...+.+. + ... ...++||||+|+|||+|++++++..+..
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~~---~-~~~--~~~l~l~G~~GsGKThLl~~~~~~~~~~ 71 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDHW---P-NWP--SPVVVLAGPVGSGKTHLASIWREKSDAL 71 (226)
T ss_pred CCCChhceeecCchHHHHHHHHhc---c-cCC--CCeEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 4457888774 23344433332 2 111 2348999999999999999999886654
No 234
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.11 E-value=5.9e-06 Score=72.84 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.2
Q ss_pred eEEecCCCCChHHHHHHHHHHhCC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
|.|+||||+|||++|+.||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999987653
No 235
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2.8e-05 Score=81.86 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
++...+.|...+. ...++.++||+||.|+||+.+|+++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~----~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~ 52 (319)
T PRK06090 8 LVPVWQNWKAGLD----AGRIPGALLLQSDEGLGVESLVELFSRALLCQ 52 (319)
T ss_pred HHHHHHHHHHHHH----cCCcceeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4566777777663 34566799999999999999999999998653
No 236
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.11 E-value=1.2e-05 Score=94.22 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=38.6
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCc-------------ccc---ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMP-------------EFF---KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~-------------~~~---k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-.|.|.+.+|..|.-.+....... ... .+|||+|.||||||.+|+++++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ls 516 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS 516 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhC
Confidence 468999999998877775543210 011 269999999999999999999864
No 237
>KOG0990|consensus
Probab=98.10 E-value=7.3e-06 Score=86.30 Aligned_cols=60 Identities=17% Similarity=0.018 Sum_probs=51.3
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+|.+.+++..+.+++++++....+.++...+ .. .+.|+|||||+|||....+.|..+-++
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~----~l-Ph~L~YgPPGtGktsti~a~a~~ly~~ 89 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMP----GL-PHLLFYGPPGTGKTSTILANARDFYSP 89 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCC----CC-CcccccCCCCCCCCCchhhhhhhhcCC
Confidence 6788899999999999999999999986433 22 289999999999999999999987664
No 238
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.10 E-value=6e-06 Score=86.48 Aligned_cols=93 Identities=28% Similarity=0.403 Sum_probs=71.4
Q ss_pred eeEEecCCCCChHHHHHHHH------HHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCC
Q psy16204 249 EALERHSHGTGKTMLAKAVA------TECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNG 322 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA------~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~ 322 (577)
.+||.||+|.||+.||+.|- ..+..+|++|+|..+.. . ..+..+|..
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg----d--~amsalfgh--------------------- 262 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG----D--TAMSALFGH--------------------- 262 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC----c--hHHHHHHhh---------------------
Confidence 58999999999999999886 34568999999998743 2 344556654
Q ss_pred CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchh
Q psy16204 323 EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGR 402 (577)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 402 (577)
++|+||++...+.|.
T Consensus 263 -------------------vkgaftga~~~r~gl---------------------------------------------- 277 (531)
T COG4650 263 -------------------VKGAFTGARESREGL---------------------------------------------- 277 (531)
T ss_pred -------------------hccccccchhhhhhh----------------------------------------------
Confidence 689999988777766
Q ss_pred hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204 403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG 453 (577)
Q Consensus 403 ~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~ 453 (577)
.+.....++|+|||..++.. -+.-||..|+.
T Consensus 278 --------lrsadggmlfldeigelgad------------eqamllkaiee 308 (531)
T COG4650 278 --------LRSADGGMLFLDEIGELGAD------------EQAMLLKAIEE 308 (531)
T ss_pred --------hccCCCceEehHhhhhcCcc------------HHHHHHHHHHh
Confidence 66667789999999988651 14567777763
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.05 E-value=6.9e-06 Score=79.15 Aligned_cols=38 Identities=34% Similarity=0.395 Sum_probs=29.3
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
..+++|+||+|||||.||-++++++ |.++.+++..+++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 3689999999999999999999876 6777777776553
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=1e-05 Score=85.05 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=38.7
Q ss_pred cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204 414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG 483 (577)
Q Consensus 414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr 483 (577)
....|++||+++.+.. ...+.||..|+.... ++.+|.+|+.++.+++.+..|
T Consensus 112 ~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~~------~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 112 GGLRVILIHPAESMNL------------QAANSLLKVLEEPPP------QVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred CCceEEEEechhhCCH------------HHHHHHHHHHHhCcC------CCEEEEEeCChHhChHHHHHH
Confidence 4456999999999865 458889999987642 255667888888877665544
No 241
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.01 E-value=9.5e-05 Score=80.33 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=43.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEecCccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSSSTLT 284 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~s~l~ 284 (577)
.+..++++++.-..-......+..++-.....+.-++|||+.|.|||.|++|++++.. ..++++...+++
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence 3445677765433322222222222222222457799999999999999999998874 356777766553
No 242
>KOG2170|consensus
Probab=97.96 E-value=7.3e-05 Score=78.48 Aligned_cols=51 Identities=24% Similarity=0.170 Sum_probs=41.4
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccce--eEEecCCCCChHHHHHHHHHHh
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKE--ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~--ILL~GPpGtGKT~LAkaLA~el 271 (577)
..+.||.-+++.+..++..-+..+..-|. +=|+|++||||..+++.||+.+
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 46799999999999998766555543343 4589999999999999999874
No 243
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.95 E-value=0.00014 Score=68.93 Aligned_cols=44 Identities=25% Similarity=0.179 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+|.++..+.|.+.+... ....++++||.|+|||+|++.+...+.
T Consensus 2 ~gR~~el~~l~~~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 2 FGREKELEKLKELLESG-----PSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 67788888888877432 235799999999999999999999984
No 244
>PF05729 NACHT: NACHT domain
Probab=97.92 E-value=0.00013 Score=65.91 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-++++|+||+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 378999999999999999997763
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.90 E-value=0.00023 Score=66.68 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=26.8
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
+|++||||+|||+++..++.+. |.++++++..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6899999999999999887654 56777777653
No 246
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.87 E-value=0.00013 Score=78.22 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=47.5
Q ss_pred CCCCcccccCcHHHHHHHHHHH-HCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAM-VLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS 285 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l-~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~ 285 (577)
....|+.|++.....+.+.+.. ... .+-..+|+.|.+||||-.+||+..... ..||+-++|..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLA----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhh----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 3456788888777666555443 221 111358999999999999999887665 47999999998754
No 247
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=8.8e-05 Score=75.92 Aligned_cols=37 Identities=24% Similarity=0.160 Sum_probs=30.3
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL 283 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l 283 (577)
..+++|+|+||+|||.||.+||+++ +..++++...++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 4689999999999999999999986 456677766443
No 248
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.00052 Score=72.15 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=45.9
Q ss_pred cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHH
Q psy16204 224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVR 296 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr 296 (577)
+....+-+.+.+.+..| ..-+.+.||..+|||+|..++.+.+ |...+++++..+-.......+..++
T Consensus 14 i~R~~~e~~~~~~i~~~------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred cCchHHHHHHHHHHhcC------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHH
Confidence 34445667777776442 1357899999999999999887665 6888899998764433333344444
No 249
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00015 Score=75.75 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=39.1
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE 482 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr 482 (577)
...|++||++|++.. ...|.||..++.-. .++++|..|+.++.|++.+..
T Consensus 95 ~~kv~ii~~ad~mt~------------~AaNaLLK~LEEPp------~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 95 PYKIYIIHEADRMTL------------DAISAFLKVLEDPP------QHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred CceEEEEechhhcCH------------HHHHHHHHHhhcCC------CCeEEEEEeCChhhCcHHHHh
Confidence 346999999999976 55899999999866 447788888888887755443
No 250
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=2.1e-05 Score=68.85 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.2
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
|++.|+||||||++|+.||+.++++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999998876665
No 251
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.80 E-value=3e-05 Score=83.71 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=72.8
Q ss_pred CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhH
Q psy16204 359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHE 438 (577)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~ 438 (577)
-++-+.|+|||+||+..+.....++...|.+-....+.+-|...+++++-.........|||||||+.+....
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q------- 120 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ------- 120 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------
Confidence 4667789999999999988888887777766655555554544444444222222335899999999997632
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchh-hHHHhhcCccc
Q psy16204 439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ-LLTLCLEGVVI 486 (577)
Q Consensus 439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~-L~~allrr~~i 486 (577)
+..||..|+.- ..++|-|||..|.- |-.+++.|..+
T Consensus 121 -----QD~lLp~vE~G-------~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 121 -----QDALLPHVENG-------TIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred -----hhhhhhhhcCC-------eEEEEeccCCCCCeeecHHHhhhhhe
Confidence 66788888742 22444455666654 77788777655
No 252
>KOG1970|consensus
Probab=97.76 E-value=0.00032 Score=78.40 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=52.8
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHC-cCCCcccc-ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVL-PTIMPEFF-KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~-pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.+.|..++.+.+.+++.=...=+..|+..+.. -...+++. +-+||+||+|||||+.++.|++++|..+.+-.
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34788888888888887766666666666640 01122232 34789999999999999999999999887755
No 253
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.76 E-value=2.9e-05 Score=86.58 Aligned_cols=71 Identities=14% Similarity=0.023 Sum_probs=56.6
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
...|.+++.+.+.+++.-...-.+.|+..+..-+......+-+||+||+|||||++++.||+++|..+.+-
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 45789999999999999988777777777754333322234578999999999999999999999888764
No 254
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.73 E-value=0.00063 Score=67.91 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204 227 TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 227 ~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
+..++.|.+.+...- .-.+-|.++|++|+|||+||+.+++.
T Consensus 2 e~~~~~l~~~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS---NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHHHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhCCC---CCeEEEEEEcCCcCCcceeeeecccc
Confidence 456677777775422 33357899999999999999999987
No 255
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.73 E-value=7.6e-05 Score=84.10 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=33.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~ 285 (577)
.+|+.|.|||||-.+||+|.+..+ .||+-|+|..+.+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~ 376 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE 376 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH
Confidence 589999999999999999998765 7999999998754
No 256
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=0.00013 Score=73.20 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=24.0
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
+..+||||+||+|||++|+.++. ...++..+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 35699999999999999999962 244444444
No 257
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.67 E-value=0.00035 Score=74.79 Aligned_cols=30 Identities=27% Similarity=0.150 Sum_probs=26.0
Q ss_pred ccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 244 PEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
...++|+.|||++|+|||+|.-.....+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 345799999999999999999999887654
No 258
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.66 E-value=7.2e-05 Score=84.44 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=48.0
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCC-ccccceeEEecCCCCChHHHHHHHHHHhC-CeEEEEec
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIM-PEFFKEALERHSHGTGKTMLAKAVATECG-TTFFNVSS 280 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~-~~~~k~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~ 280 (577)
-|+++.|++++++++.+++...... ...-..++|.||||+|||+||++||+.+. .+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4779999999999999988322111 12224689999999999999999999886 57777665
No 259
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.0018 Score=70.23 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=43.8
Q ss_pred hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHH----HC--cCCCccccceeEEecCCCCChHHHHHHH
Q psy16204 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAM----VL--PTIMPEFFKEALERHSHGTGKTMLAKAV 267 (577)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l----~~--pl~~~~~~k~ILL~GPpGtGKT~LAkaL 267 (577)
....++.+.+++.+-....... ..+++...+.+++.|.+.+ .. |......+..++|+||+|+|||+++.-|
T Consensus 118 L~~~dv~~~~~~~i~~~~~~~~---~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKL 194 (388)
T PRK12723 118 LRENDFSESYIKDINEFIKKEF---SLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKL 194 (388)
T ss_pred HHHCCCCHHHHHHHHHHHHHHh---hhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3457788877776655443322 2223333444554444333 21 1111122356899999999999999999
Q ss_pred HHHh
Q psy16204 268 ATEC 271 (577)
Q Consensus 268 A~el 271 (577)
|..+
T Consensus 195 A~~~ 198 (388)
T PRK12723 195 AAIY 198 (388)
T ss_pred HHHH
Confidence 8765
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0021 Score=70.35 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=50.8
Q ss_pred hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCC----ccccceeEEecCCCCChHHHHHHHHH
Q psy16204 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIM----PEFFKEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~----~~~~k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
....++.+.++..+-+........ ........+++.+.+.+...+.. ...++.|+|.||+|+|||+++..||.
T Consensus 187 L~~~dV~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 187 LEQNDVEQYFIHAYAEKLKVKFEN---ATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred HHHCCCCHHHHHHHHHHHHhhhcc---cccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHH
Confidence 445778888877665544332221 12233355666666555321211 12235689999999999999999997
Q ss_pred HhC---CeEEEEecC
Q psy16204 270 ECG---TTFFNVSSS 281 (577)
Q Consensus 270 el~---~~fv~v~~s 281 (577)
.+. ..+..+++.
T Consensus 264 ~L~~~GkkVglI~aD 278 (436)
T PRK11889 264 QFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHcCCcEEEEecC
Confidence 763 344455554
No 261
>PHA00729 NTP-binding motif containing protein
Probab=97.61 E-value=0.00074 Score=68.32 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=23.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+++|+|+||||||+||.+||.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999876
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.60 E-value=0.0035 Score=68.95 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+..++|+|++|+|||+++..||..+ |..+..+++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4678999999999999999999776 456666666543
No 263
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0021 Score=67.17 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG 483 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr 483 (577)
...|++||++|.+.. ...|.||..++.-.. ++++|.+|+.++.|++.+..|
T Consensus 104 ~~kV~II~~ad~m~~------------~AaNaLLKtLEEPp~------~t~~iL~t~~~~~lLpTI~SR 154 (290)
T PRK07276 104 KQQVFIIKDADKMHV------------NAANSLLKVIEEPQS------EIYIFLLTNDENKVLPTIKSR 154 (290)
T ss_pred CcEEEEeehhhhcCH------------HHHHHHHHHhcCCCC------CeEEEEEECChhhCchHHHHc
Confidence 346999999999976 458999999998663 467778887788766666554
No 264
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.56 E-value=0.00095 Score=75.68 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=46.3
Q ss_pred cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-------CCCcCCCceEEEEEecCCc---hhhHHHhhcC
Q psy16204 414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-------NSSLYEDKIIMILAATNHP---YQLLTLCLEG 483 (577)
Q Consensus 414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-------~~~~~~~~~VlIIatTN~p---~~L~~allrr 483 (577)
.+..||||||+..+.+ .+++.|++-|+.- ........++++||+-|.. +.|..++++|
T Consensus 92 Ah~GvL~lDe~n~~~~------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDR 159 (584)
T PRK13406 92 ADGGVLVLAMAERLEP------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADR 159 (584)
T ss_pred ccCCEEEecCcccCCH------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhh
Confidence 3456999999988865 7899999999852 1112234568888874433 2388889999
Q ss_pred cccccccC
Q psy16204 484 VVIDVNLD 491 (577)
Q Consensus 484 ~~i~~~vd 491 (577)
|.+..+++
T Consensus 160 f~l~v~v~ 167 (584)
T PRK13406 160 LAFHLDLD 167 (584)
T ss_pred eEEEEEcC
Confidence 98865553
No 265
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.55 E-value=0.0055 Score=74.23 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=51.9
Q ss_pred chhhhHHHhhhhhcC---CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 201 PSLIETLEKDILQNN---PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 201 ~~~~~~~~~~~~~~~---~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
..+|+..-+++.... +...+++++|.+...+.|...+.... +-.+-|-++|++|+|||+||++++..+...|
T Consensus 161 ~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~---~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 161 AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES---EEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred HHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc---CceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 344555555554443 33467899999999999998875432 2235678999999999999999998875443
No 266
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.54 E-value=0.00034 Score=65.12 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=42.5
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccce--eEEecCCCCChHHHHHHHHHHh
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKE--ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~--ILL~GPpGtGKT~LAkaLA~el 271 (577)
-.++.||.-|.+.|..++..-+..+...+. +-|+|+||||||.+++.||+.+
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 457899999999999998776655443344 5599999999999999999985
No 267
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0016 Score=70.31 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..++|.||+|||||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999764
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00074 Score=70.63 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV 484 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~ 484 (577)
..-|++||++|++.. ...+.||..|+.... ++++|.+|+.++.|++.+..|.
T Consensus 90 ~~KvvII~~~e~m~~------------~a~NaLLK~LEEPp~------~t~~il~~~~~~kll~TI~SRc 141 (299)
T PRK07132 90 QKKILIIKNIEKTSN------------SLLNALLKTIEEPPK------DTYFLLTTKNINKVLPTIVSRC 141 (299)
T ss_pred CceEEEEecccccCH------------HHHHHHHHHhhCCCC------CeEEEEEeCChHhChHHHHhCe
Confidence 446999999988854 457899999998664 4677777778888887655443
No 269
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=0.00016 Score=68.81 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+.|++.||||+|||++|+.|++.++.+++.++.-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 3589999999999999999999999999888754
No 270
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.50 E-value=0.0004 Score=66.93 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++++||||+|||+++..++.+. +...++++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 347999999999999999988654 56788888864
No 271
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.48 E-value=0.00012 Score=70.22 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=22.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeE
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTF 275 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~f 275 (577)
.++|.|+||+|||++++.+.+.+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 47999999999999999999998 5554
No 272
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.47 E-value=0.00063 Score=83.18 Aligned_cols=40 Identities=33% Similarity=0.347 Sum_probs=36.4
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+.+++||-|.||+|||+|..+||+..|-.+++++.++.++
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTd 1581 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTD 1581 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccch
Confidence 3478999999999999999999999999999999997654
No 273
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.46 E-value=0.00011 Score=67.59 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=28.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
..|+|+|+||||||++|+.||+.++.+|+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4789999999999999999999999988753
No 274
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.46 E-value=0.00036 Score=70.36 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=32.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
.+..++||+|||||+++|.+|+.+|.+++.++|++.++
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~ 70 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD 70 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc
Confidence 36678999999999999999999999999999998654
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.45 E-value=0.0012 Score=72.37 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-+|++|+||+|||+|+..+|... +.++++++..+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 357999999999999999998765 56788887643
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00054 Score=66.63 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..+.+.|+||+|||+++.-||..+.-
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 36899999999999999999988753
No 277
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.44 E-value=0.00085 Score=65.65 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=28.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
.-++++|+||+|||++|..+|.++ +..++++++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 347999999999999999999755 6778888775
No 278
>PRK13947 shikimate kinase; Provisional
Probab=97.43 E-value=0.00012 Score=68.03 Aligned_cols=41 Identities=32% Similarity=0.318 Sum_probs=32.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE 290 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~ 290 (577)
++|+|.|+||||||++|+.||+.++.+|+..+ .+.....|.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~ 42 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGM 42 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCC
Confidence 36899999999999999999999999986544 344444443
No 279
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.36 E-value=0.0014 Score=64.25 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=35.7
Q ss_pred cchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204 399 HSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455 (577)
Q Consensus 399 d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~ 455 (577)
+...+...+...++...+.+++||-+..+.. . ......++++..|...+....
T Consensus 99 ~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~---~~~~~~r~~l~~l~~~l~~~~ 151 (226)
T PF06745_consen 99 DLEELLSKIREAIEELKPDRVVIDSLSALLL-Y---DDPEELRRFLRALIKFLKSRG 151 (226)
T ss_dssp CHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-S---SSGGGHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-c---CCHHHHHHHHHHHHHHHHHCC
Confidence 4455555555557778889999999999922 1 223445677788888776544
No 280
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.36 E-value=0.00018 Score=65.35 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
+|+|+|+||+|||++|+.||+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999999877544
No 281
>PRK03839 putative kinase; Provisional
Probab=97.35 E-value=0.00017 Score=68.24 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=28.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|+|.|+||+|||++++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999999987654
No 282
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.35 E-value=0.0041 Score=61.12 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~ 282 (577)
-+++.|+||+|||+++..++..+ +.+++++++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 47999999999999999887654 67888888754
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.34 E-value=0.0037 Score=67.28 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
.-+|++|+||+|||+|+..+|..+ +.++++++..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 357999999999999999998765 3567777764
No 284
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.31 E-value=0.00021 Score=64.12 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=25.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
|++.||||+|||++|+.+++.++ +..++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHH
Confidence 68999999999999999999999 44455443
No 285
>KOG2035|consensus
Probab=97.28 E-value=0.0044 Score=65.04 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=47.2
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
|+..+.+.+++.+++..+....|..... ..-+.++|+|||+|+||-+.+.+|-+++
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-----~~d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSS-----TGDFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcc-----cCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 6677888889999999999998888763 2334589999999999999999999887
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.0073 Score=64.34 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=26.4
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
+.-++|.|++|+|||+++..+|..+ +..+..+.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3568999999999999888888765 3455555544
No 287
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=0.0005 Score=70.73 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=25.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC-e--EEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT-T--FFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~-~--fv~v~~s~ 282 (577)
+.+||+||+|||||.+++.+-..+.- . ...+.++.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~ 71 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA 71 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC
Confidence 57999999999999999987665542 2 33455543
No 288
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.24 E-value=0.00027 Score=63.35 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=28.0
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
|++.|+||||||++|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999988776
No 289
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.22 E-value=0.01 Score=59.23 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~ 282 (577)
..+|++||||+|||.+|-.++.+ .|-+.++++..+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 56899999999999999877654 266788888754
No 290
>PRK00625 shikimate kinase; Provisional
Probab=97.22 E-value=0.0003 Score=67.86 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=28.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|+|.|.||+|||++++.||+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999987765
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.20 E-value=0.0075 Score=59.58 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=28.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
..++++|+||+|||+++.+++.+. +.++++++..+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 458999999999999999997653 67888888753
No 292
>PRK07261 topology modulation protein; Provisional
Probab=97.20 E-value=0.00056 Score=65.22 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=30.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
-|++.|+||+|||+||+.|+..++.+++.++.-..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999999999999887765433
No 293
>PRK14532 adenylate kinase; Provisional
Probab=97.20 E-value=0.00033 Score=66.58 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=28.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
.|+|.||||+|||++|+.||+.+|+++ ++..+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHH
Confidence 489999999999999999999998655 55655544
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.18 E-value=0.0061 Score=61.04 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=25.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
..+++.|+||||||++|..++..+ |...+++...
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 358999999999999986655443 4566777754
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.17 E-value=0.0075 Score=60.47 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~ 282 (577)
-++|.|+||+|||+++..+|..+ +.++++++...
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 47899999999999999887664 66777777653
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.16 E-value=0.008 Score=58.65 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=23.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
-+++.|+||||||++++.++..+ +..++.+...
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 46789999999999999988665 4455555443
No 297
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.15 E-value=0.00039 Score=63.48 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=26.8
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
++|.|+||+|||++|+.|++.++..++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.00038 Score=65.45 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
|++.|+||+|||++|+.||+.+++ ..++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 689999999999999999999985 5666666543
No 299
>PRK13949 shikimate kinase; Provisional
Probab=97.11 E-value=0.00041 Score=66.22 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=29.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
+.|+|.|+||+|||++++.||+.++.+|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46899999999999999999999999987765
No 300
>PRK06217 hypothetical protein; Validated
Probab=97.09 E-value=0.00047 Score=65.82 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=28.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|+|.|++|+|||++|++|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999877655
No 301
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.09 E-value=0.024 Score=62.39 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=29.1
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+.-|+|+|++|+|||+++..||..+ |..+..+++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 3458999999999999999999776 566666666543
No 302
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.09 E-value=0.00047 Score=65.04 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
|++.|+||+|||++|+.||+.+++.+ ++..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHH
Confidence 78999999999999999999988765 4455443
No 303
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.002 Score=66.59 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV 484 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~ 484 (577)
+.-|++||++|++.. ...|.||..++.-. .++++|..|+.++.|++.+..|.
T Consensus 88 ~~KV~II~~ae~m~~------------~AaNaLLK~LEEPp------~~t~fiLit~~~~~lLpTI~SRC 139 (261)
T PRK05818 88 GKKIYIIYGIEKLNK------------QSANSLLKLIEEPP------KNTYGIFTTRNENNILNTILSRC 139 (261)
T ss_pred CCEEEEeccHhhhCH------------HHHHHHHHhhcCCC------CCeEEEEEECChHhCchHhhhhe
Confidence 356999999999976 56899999999865 45788888888888777666653
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=97.07 E-value=0.052 Score=59.87 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=28.6
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL 283 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l 283 (577)
+.-++|+|++|+|||+++-.||..+ |..+..+++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4568999999999999777777654 566777777654
No 305
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.07 E-value=0.0048 Score=59.99 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=27.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---C------CeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---G------TTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~------~~fv~v~~s~ 282 (577)
.-++|+||||+|||++|..+|..+ + ..+++++..+
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 347899999999999999998764 2 5667777653
No 306
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.07 E-value=0.0059 Score=59.84 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
+-++|.||.|+|||+++|.|+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 4578999999999999999984
No 307
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.05 E-value=0.00062 Score=63.64 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
+.++|+|++|+|||++|+.||+.+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35889999999999999999999999987554
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.04 E-value=0.0081 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 309
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.03 E-value=0.012 Score=63.14 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=25.2
Q ss_pred ccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 244 PEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..++|+.|||+-|+|||+|.-..-..+-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 456699999999999999999888776543
No 310
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.02 E-value=0.00056 Score=63.42 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=26.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
|+|.||+|+|||++|+.|++.++..++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999997665 44444
No 311
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.02 E-value=0.00046 Score=65.31 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=30.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
-|+|.|+||+|||++|+.|++.++.+++.++...+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 58999999999999999999999888877665543
No 312
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.02 E-value=0.01 Score=57.68 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
-++++|+||+|||++|..+|.++ +.++++++..
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 48999999999999999999776 4677778764
No 313
>PRK14530 adenylate kinase; Provisional
Probab=97.00 E-value=0.00072 Score=66.16 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.|+|.||||+|||++|+.||+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999998766533
No 314
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.99 E-value=0.0032 Score=66.67 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=27.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++++||||+|||+||-.++.++ +.+++++++..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 357899999999999998777655 46677777654
No 315
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.98 E-value=0.021 Score=56.82 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=18.8
Q ss_pred eEEecCCCCChHHHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~e 270 (577)
.+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999988865
No 316
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.97 E-value=0.0053 Score=57.99 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=29.2
Q ss_pred hhhhhHHHHHh-cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCC
Q psy16204 403 INKNSLFQARC-YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 472 (577)
Q Consensus 403 ~~~~~~~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~ 472 (577)
.++.+...+.. +.+.+|+||-+..+... +.+. ......+++.|....+..+ -.|+++.-+|+
T Consensus 128 ~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~~~-~~~~~~~~~~l~~la~~~~------~~vi~v~H~~K 190 (193)
T PF13481_consen 128 DLEELEAALKELYGPDLVVIDPLQSLHDG-DENS-NSAVAQLMQELKRLAKEYG------VAVILVHHTNK 190 (193)
T ss_dssp HHHHHHHHHTT----SEEEEE-GGGG--S--TT--HHHHHHHHHHHHHHHHHH--------EEEEEEEE--
T ss_pred HHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CCCC-HHHHHHHHHHHHHHHHHcC------CEEEEEECCCC
Confidence 34455555666 67899999999999985 2222 2222455555554444333 23666665654
No 317
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.97 E-value=0.0062 Score=58.56 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.+|+.|+||+|||++|..++.+++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4799999999999999999999988877776654
No 318
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.96 E-value=0.0015 Score=71.09 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-.|++||||||||+|++.|++....
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3799999999999999999998754
No 319
>PRK14531 adenylate kinase; Provisional
Probab=96.96 E-value=0.00073 Score=64.62 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=28.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
.|++.||||+|||++++.||+.+|.++ +++.+++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~--is~gd~l 37 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRH--LSTGDLL 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe--EecccHH
Confidence 589999999999999999999998765 4555543
No 320
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.96 E-value=0.0092 Score=57.48 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=28.8
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+|++|++|+|||++|..++...+.+.+++....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 589999999999999999998888888886554
No 321
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.94 E-value=0.00023 Score=74.89 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=34.5
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccc----c---ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEF----F---KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~----~---k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
-.|.|.+.+|..|.=.+..+...... . -++||.|.||+|||.|.+.+++-.... +++++.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~ 90 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGK 90 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCC
Confidence 36788888776554444333222110 1 369999999999999999876544333 344443
No 322
>KOG2543|consensus
Probab=96.93 E-value=0.0066 Score=65.84 Aligned_cols=66 Identities=14% Similarity=-0.014 Sum_probs=53.8
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+....+.+.+.++..|...+-. ... ..+..+.|||-.|||||.+.|.+-+.++.+.+.++|-+...
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~-~~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft 68 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGN-NSC-TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFT 68 (438)
T ss_pred ccccCccchHHHHHHHHHHhCC-CCc-ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhcc
Confidence 3456788899999999988732 222 35667899999999999999999999999999999987643
No 323
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.91 E-value=0.0056 Score=61.26 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=26.5
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
|+|.|+||+|||++|+.|++.+ +..++.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 6899999999999999999987 4556666553
No 324
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0012 Score=75.97 Aligned_cols=55 Identities=18% Similarity=0.024 Sum_probs=41.0
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccc----c---ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEF----F---KEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~----~---k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.-.|.|.+.+|..|.=.+..+...... . -+|||.|.||||||.|.|.+++.+-..
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~ 346 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG 346 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce
Confidence 456899999999887777543322111 1 369999999999999999999887544
No 325
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0035 Score=63.65 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=29.9
Q ss_pred hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204 403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455 (577)
Q Consensus 403 ~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~ 455 (577)
.-+-+|.+|-+..|.|++|||.-+... -.+..+.|..|..+.
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALD-----------PElv~EVL~vm~~LA 183 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALD-----------PELVGEVLDVMKDLA 183 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCC-----------HHHHHHHHHHHHHHH
Confidence 445567778889999999999876543 145666676766655
No 326
>PRK06762 hypothetical protein; Provisional
Probab=96.90 E-value=0.00081 Score=62.55 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=27.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
.-|+|.|+||+|||++|+.|++.++..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 347899999999999999999999655666654
No 327
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.90 E-value=0.014 Score=57.91 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.9
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
+.++|.||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999983
No 328
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.89 E-value=0.00095 Score=62.54 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
-+++.|+||+|||++|+.|++.+|... +++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~ 36 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGD 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHH
Confidence 578999999999999999999988654 44443
No 329
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.0018 Score=66.51 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|+.||||||||++.|-||..+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 330
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.022 Score=62.44 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=47.6
Q ss_pred hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC--cCCCccc---cceeEEecCCCCChHHHHHHHH
Q psy16204 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL--PTIMPEF---FKEALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~--pl~~~~~---~k~ILL~GPpGtGKT~LAkaLA 268 (577)
....|+.+.+++.+-............ .+.+.+.+.+.. +...... .+.++|.||+|||||+++..||
T Consensus 170 L~~~gv~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 170 LKRSGLSPEIAEKLLKLLLEHMPPRER-------TAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred HHHCCCCHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHH
Confidence 346788888887766655433221111 234444444322 1111111 2468999999999999988887
Q ss_pred HHh-----CCeEEEEecCc
Q psy16204 269 TEC-----GTTFFNVSSST 282 (577)
Q Consensus 269 ~el-----~~~fv~v~~s~ 282 (577)
..+ +..+..+++..
T Consensus 243 ~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 243 ARYALLYGKKKVALITLDT 261 (424)
T ss_pred HHHHHhcCCCeEEEEECCc
Confidence 654 24566666654
No 331
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.88 E-value=0.0034 Score=68.98 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=43.1
Q ss_pred CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChH
Q psy16204 182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKT 261 (577)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT 261 (577)
..-+.+++...+..+.|++|+..+ .......|...+.+ . +...++++.||+|||||
T Consensus 168 ~~FT~dEWid~LlrSiG~~P~~~~--------------------~r~k~~~L~rl~~f--v--e~~~Nli~lGp~GTGKT 223 (449)
T TIGR02688 168 KEFTLEEWIDVLIRSIGYEPEGFE--------------------ARQKLLLLARLLPL--V--EPNYNLIELGPKGTGKS 223 (449)
T ss_pred hhcCHHHHHHHHHHhcCCCcccCC--------------------hHHHHHHHHhhHHH--H--hcCCcEEEECCCCCCHH
Confidence 345577888888899999876432 12222233332211 1 12258999999999999
Q ss_pred HHHHHHHHH
Q psy16204 262 MLAKAVATE 270 (577)
Q Consensus 262 ~LAkaLA~e 270 (577)
.||.+|+..
T Consensus 224 hla~~l~~~ 232 (449)
T TIGR02688 224 YIYNNLSPY 232 (449)
T ss_pred HHHHHHhHH
Confidence 999998876
No 332
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.88 E-value=0.0016 Score=67.85 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=31.3
Q ss_pred CccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 243 MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 243 ~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.......|.|.|++|||||++++.||+.+|++|+.++
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3344467999999999999999999999999998443
No 333
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0007 Score=65.96 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=38.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~ 301 (577)
.+|.|.|++|+|||++.|+||+.++.+|+-.+. ++++..| ..+.++|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~Ie~~~g---~sI~eIF~~ 51 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--EIEKRTG---MSIAEIFEE 51 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--HHHHHHC---cCHHHHHHH
Confidence 468999999999999999999999999976553 4554444 446666664
No 334
>KOG3347|consensus
Probab=96.88 E-value=0.00077 Score=64.99 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=28.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.+||+.|.||||||+++.+||...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999998876554
No 335
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.87 E-value=0.0038 Score=61.07 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=26.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
-+.|+||||+|||++|..++..+ +...++++..+
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 47899999999999999998553 24667777654
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.019 Score=62.60 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=56.6
Q ss_pred hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc-----cccceeEEecCCCCChHHHHHHHH
Q psy16204 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP-----EFFKEALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~-----~~~k~ILL~GPpGtGKT~LAkaLA 268 (577)
....|+.+..+..+-+......+.... .+.+++...+.+.+..-+..+ ...+.++|.||+|||||+++..||
T Consensus 151 L~~~gV~~~~~~~l~~~~~~~~~~~~~---~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 151 LKGRGISDTYVADFMQAGRKQFKQVET---AHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHH
Confidence 345777877777776666555444332 335778888888775422111 112458999999999999999998
Q ss_pred HHh---CCeEEEEecCcc
Q psy16204 269 TEC---GTTFFNVSSSTL 283 (577)
Q Consensus 269 ~el---~~~fv~v~~s~l 283 (577)
..+ +..+..+++..+
T Consensus 228 ~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 228 WQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHcCCeEEEEeCCcc
Confidence 765 445555666543
No 337
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.85 E-value=0.043 Score=53.81 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
..++++|+||+|||+++..++.+. +.+.++++..
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 468999999999999999877543 5567777764
No 338
>PRK13946 shikimate kinase; Provisional
Probab=96.85 E-value=0.00089 Score=64.20 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=29.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
+.|+|.|.+|||||++++.||+.+|.+|+..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 579999999999999999999999999876653
No 339
>KOG2383|consensus
Probab=96.84 E-value=0.015 Score=63.62 Aligned_cols=27 Identities=33% Similarity=0.222 Sum_probs=22.8
Q ss_pred ccccceeEEecCCCCChHHHHHHHHHH
Q psy16204 244 PEFFKEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 244 ~~~~k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
+..++|+.|||.-|||||+|.-..-.+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhc
Confidence 455799999999999999998876544
No 340
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00039 Score=74.60 Aligned_cols=90 Identities=11% Similarity=-0.001 Sum_probs=75.7
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCccc---
Q psy16204 318 GVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ--- 394 (577)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 394 (577)
+.+.+.-.+++|-..++.++++++.-+-+++.-++..|++||.|.++|++||+||+..+.+-+..+..+|....+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34557777888899999999999999999999999999999999999999999999998888888888888777654
Q ss_pred CCCCcchhhhhhh
Q psy16204 395 SHEGHSGRINKNS 407 (577)
Q Consensus 395 ~~~~d~~~~~~~~ 407 (577)
.|+|+.-++.+++
T Consensus 224 KYiGEGaRlVRel 236 (406)
T COG1222 224 KYIGEGARLVREL 236 (406)
T ss_pred HHhccchHHHHHH
Confidence 3466655555555
No 341
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.83 E-value=0.002 Score=65.72 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..++|.||+|||||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35899999999999999999998765
No 342
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.83 E-value=0.00097 Score=58.02 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
|+|.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 343
>KOG0477|consensus
Probab=96.82 E-value=0.0012 Score=74.87 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=45.1
Q ss_pred cccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|.|...+|..+.-++..+..+..-- -++||+|.|||||+.+.|.+++.....++...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTG 514 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTG 514 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEecc
Confidence 68999999999998886644332111 35999999999999999999998877665543
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.81 E-value=0.016 Score=54.28 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=27.7
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
+++.|+||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6899999999999999998876 56677777764
No 345
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.81 E-value=0.017 Score=58.95 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=37.8
Q ss_pred HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe------EEEEecCcc
Q psy16204 229 AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT------FFNVSSSTL 283 (577)
Q Consensus 229 ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~------fv~v~~s~l 283 (577)
..+.|.+++..+-. ..+..|.|+|+=|+|||++.+.+-+++.-. ++++++-.+
T Consensus 4 ~a~~la~~I~~~~~--~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 4 YAKALAEIIKNPDS--DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred HHHHHHHHHhccCC--CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccC
Confidence 34556666654321 334578999999999999999999888644 666766543
No 346
>PRK04328 hypothetical protein; Provisional
Probab=96.81 E-value=0.037 Score=55.94 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=27.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~ 282 (577)
..+|++|+||+|||.+|-.++.+ .|-+.++++..+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 45899999999999999876654 256777777654
No 347
>PRK10536 hypothetical protein; Provisional
Probab=96.81 E-value=0.0053 Score=63.49 Aligned_cols=46 Identities=24% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..+.-|-+.......+..++.. ..-+++.||+|||||+||.++|.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566777888777777776632 136889999999999999999985
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.79 E-value=0.002 Score=62.78 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+++.||+|+|||+++++++..+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999988764
No 349
>PRK02496 adk adenylate kinase; Provisional
Probab=96.77 E-value=0.0012 Score=62.70 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=25.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
-+++.||||+|||++|+.||+.++++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48899999999999999999999876543
No 350
>PRK14528 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=63.42 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
+.+++.||||+|||++|+.||+.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 468999999999999999999999977644
No 351
>KOG1968|consensus
Probab=96.76 E-value=0.0022 Score=75.71 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=35.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~ 287 (577)
.+|++||||+|||+.|..+|+++|..++++++++..+++
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~ 397 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKK 397 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCcccccccc
Confidence 369999999999999999999999999999999886654
No 352
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.76 E-value=0.0062 Score=64.71 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++++||||+|||+||-.++.++ +...++++...
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 347899999999999999887654 56777888754
No 353
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.75 E-value=0.0014 Score=62.63 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=29.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
+.|+|.|++|+|||++++.||..++.+|+..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 468999999999999999999999999877664
No 354
>KOG0652|consensus
Probab=96.75 E-value=0.00068 Score=70.53 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=80.9
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccC--
Q psy16204 318 GVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQS-- 395 (577)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 395 (577)
+.+....++++|..+++.++.++++-+-.+...++..|+.||-|.+.|+|||+|++.++.+-...++.+|++--++|.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 445677888899999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred -CCCcchhhhhhh
Q psy16204 396 -HEGHSGRINKNS 407 (577)
Q Consensus 396 -~~~d~~~~~~~~ 407 (577)
|+||.-++.+++
T Consensus 244 MfIGdGAkLVRDA 256 (424)
T KOG0652|consen 244 MFIGDGAKLVRDA 256 (424)
T ss_pred hhhcchHHHHHHH
Confidence 477777777766
No 355
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.74 E-value=0.01 Score=57.66 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+-++|.||+|+|||+|++.|.+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4588999999999999999988753
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.72 E-value=0.0014 Score=66.08 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
.|+|.||||+|||++|+.||+.++++++ +..++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdl 40 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNI 40 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChH
Confidence 4899999999999999999999987654 44444
No 357
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.71 E-value=0.0013 Score=64.04 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
|++.||||+|||++|+.||+.+|++.+ ++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHH
Confidence 789999999999999999999987654 44444
No 358
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.70 E-value=0.036 Score=54.34 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
..+++.|+||+|||.+|..++.+. +.+.++++..+
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 458999999999999999887553 67788887764
No 359
>PRK13808 adenylate kinase; Provisional
Probab=96.70 E-value=0.0051 Score=65.55 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
.|||+||||+|||++++.||+.++++ .++..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 37999999999999999999999874 45555554
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.70 E-value=0.03 Score=55.10 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=23.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
+-++|.||+|||||+.+--||..+ +..+--+.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 568999999999999888787665 3444444443
No 361
>PRK06696 uridine kinase; Validated
Probab=96.69 E-value=0.0042 Score=61.33 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 228 EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 228 ~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
+.++.|.+.+.-. ....+.-|.+.|++|+|||++|+.|+..+ |.+++.++..++.
T Consensus 5 ~~~~~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 5 QLIKELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4455555555321 12233468899999999999999999999 6788888887763
No 362
>PRK04182 cytidylate kinase; Provisional
Probab=96.68 E-value=0.0016 Score=60.48 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=26.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|+|.|++|+|||++|+.||+.+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988754
No 363
>PRK13948 shikimate kinase; Provisional
Probab=96.68 E-value=0.0018 Score=63.10 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=33.8
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G 289 (577)
.+..|+|.|.+|+|||++++.||+.++.+|+..+ .+..+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 3467999999999999999999999999998544 45444444
No 364
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.68 E-value=0.0015 Score=63.83 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=27.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
-|++.||||+|||++|+.||+.++++. ++..++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~--is~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPH--ISTGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EECCccH
Confidence 379999999999999999999998654 4555553
No 365
>PLN02200 adenylate kinase family protein
Probab=96.66 E-value=0.0022 Score=64.49 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=30.8
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+.-|++.|+||+|||++|+.||+.+|++ .++++++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 3568999999999999999999999865 577776643
No 366
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.008 Score=60.95 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.8
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
|+|.|+||+|||++|+.||+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999985
No 367
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.63 E-value=0.095 Score=57.71 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=29.2
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL 283 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l 283 (577)
+.-++|.|++|+|||++|..+|..+ |..+..++|..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4568999999999999988887663 467777777653
No 368
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.62 E-value=0.031 Score=54.21 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-++|.||.|+|||++.+.|+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999994
No 369
>PRK06547 hypothetical protein; Provisional
Probab=96.61 E-value=0.0018 Score=62.44 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=28.3
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
..-|++.|++|+|||++|+.|++.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 356889999999999999999999988876543
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.61 E-value=0.013 Score=60.65 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=23.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
++++++||+|+|||++.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998875
No 371
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.61 E-value=0.026 Score=54.32 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=18.0
Q ss_pred eEEecCCCCChHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA 268 (577)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 372
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.069 Score=53.08 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=24.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
-++|.||+|+||++|+++|-+.. --.+.|+..
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~T 37 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSAT 37 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEec
Confidence 36789999999999999999887 333445544
No 373
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.60 E-value=0.032 Score=56.80 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=26.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
..+|++|+||+|||++|-.+|.+. |-+.++++..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 358999999999999999887653 4566666653
No 374
>PRK04296 thymidine kinase; Provisional
Probab=96.59 E-value=0.013 Score=56.84 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=24.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~ 279 (577)
-+|++||+|+|||+++..++..+ +..++.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36899999999999999888776 44555553
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.57 E-value=0.1 Score=55.20 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=50.6
Q ss_pred hHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCC-------C-ccccceeEEecCCCC
Q psy16204 187 QDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTI-------M-PEFFKEALERHSHGT 258 (577)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~-------~-~~~~k~ILL~GPpGt 258 (577)
+++++.+ ...++.+++.+.+-+.+...... .++...+.+++.|.+.+..-+. . ...+.-++|.||+|+
T Consensus 50 ~~l~~~L-~~~dv~~~~a~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGs 125 (318)
T PRK10416 50 EELEELL-IEADVGVETTEEIIEELRERVKR---KNLKDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGV 125 (318)
T ss_pred HHHHHHH-HHCCCCHHHHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCC
Confidence 3443333 45677777766655544333211 1222334455555554432111 1 112345889999999
Q ss_pred ChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 259 GKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 259 GKT~LAkaLA~el---~~~fv~v~~s 281 (577)
|||+++..||..+ +..+..+++.
T Consensus 126 GKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 126 GKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 9999999999876 3445555543
No 376
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.56 E-value=0.037 Score=53.69 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.++|.||.|+|||++.|.|+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 489999999999999999983
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.56 E-value=0.13 Score=53.23 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=27.6
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
++-++|.||+|+|||+++..||..+ |..+.-+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3568889999999999999888766 45566666553
No 378
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.56 E-value=0.0028 Score=63.76 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=35.4
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
++++++-.....+.+.+++....+ ...++|+.|++|+|||++++++...+.
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~---~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVR---GRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHH---TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cHhhccCchhhHHHHHHHHhhccc---cceEEEEECCCccccchHHHHHhhhcc
Confidence 455555544444556666544321 226899999999999999999998864
No 379
>KOG0482|consensus
Probab=96.55 E-value=0.0035 Score=69.93 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=40.6
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCcc----cc---ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPE----FF---KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~----~~---k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-+|.|..++|..|.-.++....+.. .. -+|||.|.||+-|+.|.+.|.+-.-.
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR 401 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR 401 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc
Confidence 4789999999999888866432211 11 25899999999999999999876543
No 380
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0021 Score=62.68 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
|-+.||||||||++|+.||+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999865
No 381
>KOG1051|consensus
Probab=96.54 E-value=0.024 Score=67.10 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=48.7
Q ss_pred cccccCc-HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----------CeEEEEecCcccc--c
Q psy16204 220 WNKVAGL-TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----------TTFFNVSSSTLTS--K 286 (577)
Q Consensus 220 ~~dIiG~-~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----------~~fv~v~~s~l~~--k 286 (577)
++-++|. ++..+++.+.+..... ++-+|.|.||+|||.++.-+|+... ..++.++...+.. +
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk-----~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~ 259 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTK-----NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAK 259 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCC-----CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcc
Confidence 5667777 7777777777744222 5779999999999999999997752 2344444443332 4
Q ss_pred cccchHHHHHHHHH
Q psy16204 287 YRGESEKLVRLLFE 300 (577)
Q Consensus 287 ~~G~~e~~vr~lF~ 300 (577)
+.|+.|..++.+..
T Consensus 260 ~rge~E~rlk~l~k 273 (898)
T KOG1051|consen 260 RRGEFEERLKELLK 273 (898)
T ss_pred cchHHHHHHHHHHH
Confidence 44455555444443
No 382
>PRK04040 adenylate kinase; Provisional
Probab=96.54 E-value=0.0027 Score=61.88 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=25.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh--CCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC--GTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el--~~~fv 276 (577)
+-|+++|+||||||++++.+++.+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468999999999999999999999 55554
No 383
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.022 Score=58.08 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=83.1
Q ss_pred eEEecCCCCChHHHHHHHHHHhC-CeE------EEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG-TTF------FNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNG 322 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~-~~f------v~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~ 322 (577)
.-|.||+|||||++.|.+-.-.. .+- +.+++.++.+. .-+-..+|.-..| +.-.+|-
T Consensus 36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~--~~d~~~lRr~vGM--------------VFQkPnP 99 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP--KVDVVELRRRVGM--------------VFQKPNP 99 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC--CCCHHHHHHHhee--------------eccCCCC
Confidence 46889999999999999865433 222 23334444332 1122334433332 3345788
Q ss_pred CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcc----hhhhhhhhcccCCCCccc--CC
Q psy16204 323 EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWS----MVAVVATHFTWGKKGTCQ--SH 396 (577)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~ 396 (577)
||-++.+| +.|++---|...-. +...+..-.=|.+.+..+ +-
T Consensus 100 Fp~SIydN--------------------------------VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa 147 (253)
T COG1117 100 FPMSIYDN--------------------------------VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSA 147 (253)
T ss_pred CCchHHHH--------------------------------HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCc
Confidence 88888776 11111111111111 111222222344444333 22
Q ss_pred CCcchh-hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCc
Q psy16204 397 EGHSGR-INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP 473 (577)
Q Consensus 397 ~~d~~~-~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p 473 (577)
.+-+|+ .-+=++.++-...|.||++||--+... .....-+.+|+..+.. +-.+||.|-|..
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALD--------PIsT~kIEeLi~eLk~--------~yTIviVTHnmq 209 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD--------PISTLKIEELITELKK--------KYTIVIVTHNMQ 209 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccC--------chhHHHHHHHHHHHHh--------ccEEEEEeCCHH
Confidence 443333 445578888889999999999754432 1222335566665552 224777776643
No 384
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.53 E-value=0.044 Score=60.71 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~ 282 (577)
..+|++|+||+|||++|..++.+. |-+.++++..+
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 458999999999999999877542 56788887764
No 385
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.51 E-value=0.0024 Score=58.90 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=25.6
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
|.+.|++|+|||++|+.||+.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 6899999999999999999999988654
No 386
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.51 E-value=0.011 Score=61.76 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=22.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+++|+.|++|+|||+++++|...+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999886
No 387
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.50 E-value=0.0019 Score=59.51 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=25.6
Q ss_pred EecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 252 ERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 252 L~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
+.||||+|||++|+.||+.+|. +.++..+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999975 456665554
No 388
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.031 Score=57.90 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=26.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
..++|+|++|+|||++++.|+..+ +.....+++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D 112 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 468999999999999999998876 2344445443
No 389
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.47 E-value=0.039 Score=53.49 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.7
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-+.|.||.|+|||+|.+++..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 378999999999999999864
No 390
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.45 E-value=0.0028 Score=64.47 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=26.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v~~s~l 283 (577)
.-++|.|+||||||++|+.|++.+ +..+ ++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~--l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVN--VNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEE--EeccHH
Confidence 357899999999999999999998 5544 444433
No 391
>PRK08233 hypothetical protein; Provisional
Probab=96.45 E-value=0.0033 Score=58.64 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=25.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC-CeEEEEec
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG-TTFFNVSS 280 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~ 280 (577)
-|.+.|+||+|||++|+.|+..++ ..++.++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 467889999999999999999986 44544443
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.43 E-value=0.016 Score=59.75 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=47.0
Q ss_pred hhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCC----Cc---cccceeEEecCCCCChHHHHHHH
Q psy16204 195 YSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTI----MP---EFFKEALERHSHGTGKTMLAKAV 267 (577)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~----~~---~~~k~ILL~GPpGtGKT~LAkaL 267 (577)
...|+++.+++.+.+.+... ...+.+...+.+.|..-+. .. .....++|.||+|+|||+++..|
T Consensus 144 ~~~gv~~~la~~L~~~l~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 144 LRAGVSPELARELLEKLPER---------ADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred HHCCCCHHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHH
Confidence 35678887777666544321 2233344444444422111 11 12246889999999999999999
Q ss_pred HHHh----C-CeEEEEecCc
Q psy16204 268 ATEC----G-TTFFNVSSST 282 (577)
Q Consensus 268 A~el----~-~~fv~v~~s~ 282 (577)
|..+ + ..+..+.+..
T Consensus 215 a~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 215 AARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHcCCCeEEEEECCc
Confidence 8765 3 5666666554
No 393
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.43 E-value=0.02 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.||.|+|||+|.+.|+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999654
No 394
>PRK14527 adenylate kinase; Provisional
Probab=96.42 E-value=0.0021 Score=61.64 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=25.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
.-+++.||||+|||++|+.||+.++...
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 4589999999999999999999988654
No 395
>KOG0480|consensus
Probab=96.41 E-value=0.011 Score=67.31 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=42.1
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccc----c---ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEF----F---KEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~----~---k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
-.+-.|.|.+.+|.-|.=.+-.+...... . -+||+.|.||+||+.+.++++.-+-..
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~ 405 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS 405 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc
Confidence 45678999999999877766543322111 1 369999999999999999998766544
No 396
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.41 E-value=0.0039 Score=59.07 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=17.2
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7999999999998766666665
No 397
>PRK01184 hypothetical protein; Provisional
Probab=96.40 E-value=0.003 Score=59.88 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
-|+|.|+||+|||++++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999998 788999877544
No 398
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.40 E-value=0.015 Score=62.26 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=29.5
Q ss_pred eEEecCCCCChHHHHHHHHHHh----CCeEEEEecCccc
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTLT 284 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l~ 284 (577)
+.|.|+||+|||+++++|+..+ |..+..++..+++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 4689999999999999999665 4678888888876
No 399
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0027 Score=61.67 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=26.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
.|+|.||||+|||++|+.||+. .++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 4799999999999999999999 44555655443
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.39 E-value=0.018 Score=59.04 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..+++++-.....+.|.+++..+ ...+|+.||+|+|||++++++...+.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~------~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKP------HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC------CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 45677776777777777776432 12489999999999999999987763
No 401
>KOG0478|consensus
Probab=96.38 E-value=0.0055 Score=70.24 Aligned_cols=52 Identities=19% Similarity=0.059 Sum_probs=38.2
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCcc----cc---ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPE----FF---KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~----~~---k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-.|.|++++|.-|.=.|....+... .+ -+|||+|.||||||.|.+.+++-+-
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p 487 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP 487 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC
Confidence 3678889988877666644432211 12 3699999999999999999998754
No 402
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.38 E-value=0.063 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.+.||.|+|||+|++.|+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999764
No 403
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.16 Score=56.22 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=46.7
Q ss_pred hhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcC--CCc-------cccceeEEecCCCCChHHHHH
Q psy16204 195 YSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT--IMP-------EFFKEALERHSHGTGKTMLAK 265 (577)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl--~~~-------~~~k~ILL~GPpGtGKT~LAk 265 (577)
...|+.+.+++.+-.......... +....+++...|.+.+...+ ... ....-++|.||+|||||+++.
T Consensus 165 l~~gV~~~la~~Li~~l~~~~~~~---~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 165 VREGMSQSYVEEMASKLEERLSPV---DQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred HHCCCCHHHHHHHHHHHHHhhccc---cccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHH
Confidence 457778776665544433222111 11223444555555443211 110 012348899999999999999
Q ss_pred HHHHHh----CCeEEEEecCc
Q psy16204 266 AVATEC----GTTFFNVSSST 282 (577)
Q Consensus 266 aLA~el----~~~fv~v~~s~ 282 (577)
.||..+ |..+..+++..
T Consensus 242 KLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 242 KLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred HHHHHHHHhcCCeEEEecccc
Confidence 999754 34455555543
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.056 Score=59.38 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=40.7
Q ss_pred hhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc---cceeEEecCCCCChHHHHHHHHHHh
Q psy16204 195 YSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF---FKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~---~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
...|+.+.+...+-........ .+ -..+.+++.|.+.+.. +..... ..-+.|.||+|+|||++++.||..+
T Consensus 142 ~~~~v~~~la~~l~~~~~~~~~---~~--~~~~~~~~~l~~~l~~-~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 142 LSAGFSPLLSRHLLEKLPADRD---FE--QSLKKTISLLTLNLRT-IGGDEIIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred HHCCCCHHHHHHHHHHHHHHhh---hh--hHHHHHHHHHHHHHHh-cCCccccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467777776655443322111 11 1244455555555432 111111 2358999999999999999998764
No 405
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.007 Score=58.78 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+.|.||.|+|||+|++.|+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 478999999999999999998753
No 406
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.35 E-value=0.011 Score=61.43 Aligned_cols=63 Identities=27% Similarity=0.216 Sum_probs=40.2
Q ss_pred hhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh
Q psy16204 404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL 481 (577)
Q Consensus 404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all 481 (577)
.+-.+.+|-.+.|.++|+||--. +-+...+..+.++|..+..-. ++.|+.+|..++.+...|-
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~--------GLDp~~~~~~~~~l~~l~~~g-------~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTS--------GLDPESRREIWELLRELAKEG-------GVTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCc--------CCCHHHHHHHHHHHHHHHhCC-------CcEEEEeCCcHHHHHHhCC
Confidence 34445567889999999999532 233444444555555444322 2578889999988877733
No 407
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.33 E-value=0.0031 Score=58.72 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
|.|.|+||||||+|++.|++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999998 87765
No 408
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.33 E-value=0.061 Score=59.48 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=27.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
.-+|+.|+||+|||+|+..+|..+ +.++++++..
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 347999999999999999998765 3467777764
No 409
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0025 Score=62.45 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|++.|.||||||++++.|+ ++|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998876655
No 410
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.30 E-value=0.016 Score=59.95 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=31.1
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc-c--cc-ccchHHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT-S--KY-RGESEKLVRLLFE 300 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~-~--k~-~G~~e~~vr~lF~ 300 (577)
|+|+|.||+|||++|+.|++.+ +..+..++...+. . .| ....|+.+|..+.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~ 61 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLK 61 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHH
Confidence 6899999999999999999875 4667777755443 1 12 2234666665544
No 411
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.015 Score=62.27 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred eEEecCCCCChHHHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~e 270 (577)
+.|.||+|||||++.|.||--
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999943
No 412
>PRK05973 replicative DNA helicase; Provisional
Probab=96.30 E-value=0.04 Score=56.17 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=27.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
.-+|+.|+||+|||+++-.++.+. |.+.++++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 348999999999999999887654 6677777664
No 413
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.38 Score=53.25 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=28.5
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.+.-||+.|--|+|||+.|--||..+ +.....|.|..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~ 138 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT 138 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc
Confidence 34568999999999999988888776 45666666654
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.097 Score=59.35 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..+.|+||+|+|||+++..||..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999988764
No 415
>PRK09354 recA recombinase A; Provisional
Probab=96.29 E-value=0.023 Score=60.99 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=28.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++++||+|||||+||-.++.++ |...++++...
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 347899999999999999777554 56778888764
No 416
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.29 E-value=0.011 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999765
No 417
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.012 Score=55.82 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|+++|+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999654
No 418
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.27 E-value=0.02 Score=59.72 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=28.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
.-++++||||+|||.++-.+|..+ +...++++..+
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 347899999999999999998764 23678888754
No 419
>PHA02624 large T antigen; Provisional
Probab=96.24 E-value=0.0066 Score=69.26 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=31.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+.+||+||||||||+++.+|++.++...+.|+++.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 46899999999999999999999987777788664
No 420
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.24 E-value=0.034 Score=57.55 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=28.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~ 282 (577)
.-++++||||+|||+++-.+|..+. ...++|+..+
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3478999999999999999987742 3678887754
No 421
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.22 E-value=0.011 Score=63.48 Aligned_cols=81 Identities=17% Similarity=0.091 Sum_probs=56.4
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCcccc-ceeEEecCCCCChHHHHHHHHHHhC-CeEEEEecCccccccccchHHHHHHH
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFF-KEALERHSHGTGKTMLAKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLL 298 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~s~l~~k~~G~~e~~vr~l 298 (577)
+++.|+++++++|.+++...-.+.+.- +-++|.||+|+|||+|++.|.+-+. .+++.+..|-.-+.-.+..-..+|..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~ 140 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRRE 140 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHH
Confidence 489999999999999986543333333 4578999999999999999998885 45666655544443333334445555
Q ss_pred HHH
Q psy16204 299 FEM 301 (577)
Q Consensus 299 F~~ 301 (577)
|..
T Consensus 141 ~~~ 143 (358)
T PF08298_consen 141 FED 143 (358)
T ss_pred HHH
Confidence 543
No 422
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.22 E-value=0.055 Score=52.88 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-++|+||.|+|||+|+++|+-.++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999999999999987653
No 423
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.20 E-value=0.0074 Score=61.56 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=32.9
Q ss_pred HHhcCCeEEEEccccccccCCC-CCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEe
Q psy16204 411 ARCYAPSTIFIDEVDSLCSMRG-SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA 469 (577)
Q Consensus 411 a~~~~p~IIfIDEID~l~~~r~-~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIat 469 (577)
.....-.+|+||-|-.+....- +.++.......+..++..|..+... .++.||.|
T Consensus 129 l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~----~~iaVvvT 184 (256)
T PF08423_consen 129 LSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARK----YNIAVVVT 184 (256)
T ss_dssp HHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHH----TT-EEEEE
T ss_pred ccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHh----CCceEEee
Confidence 3445668999999999876432 2223344456677777667665532 33556555
No 424
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.20 E-value=0.005 Score=57.38 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=27.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
++|.|+||+|||++|+.|+..+ +...+.++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d 36 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGD 36 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 6899999999999999999998 6666666543
No 425
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.18 E-value=0.015 Score=61.77 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=31.5
Q ss_pred ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
++......+-|..++... +++|+.|++|+|||+++++|.....
T Consensus 143 ~~~~~~~~~~L~~~v~~~-------~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 143 LLAEKKIKEFLEHAVISK-------KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred hhhhHHHHHHHHHHHHcC-------CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 344444455555555332 6899999999999999999998875
No 426
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.17 E-value=0.01 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..+.|.||.|+|||+|.+.|+...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999765
No 427
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.17 E-value=0.014 Score=56.66 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=32.6
Q ss_pred CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV 484 (577)
Q Consensus 415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~ 484 (577)
..++|+|||+....+.+...+. . ....++.+.... ..++-||.+|-.|..|++.+++..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~--~----~~~~~~~l~~hR-----h~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGK--K----VPEIIEFLAQHR-----HYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----------HHHHGGGGCC-----CTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccc--c----chHHHHHHHHhC-----cCCcEEEEEeCCHHHHhHHHHHHH
Confidence 4589999999999998765211 0 122233333322 134678899999999999887643
No 428
>PTZ00035 Rad51 protein; Provisional
Probab=96.15 E-value=0.039 Score=58.70 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~ 282 (577)
+.++|+||+|||+++..++-.+. ...++++...
T Consensus 121 teI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 121 TELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred EEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 68999999999999999886543 3456666543
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.15 E-value=0.074 Score=58.95 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
..+|+.||||+|||+|+-.++.+. |-+.++++..+
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 458999999999999999888765 55777777654
No 430
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.14 E-value=0.015 Score=61.32 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=26.6
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
.+-.||+.|++|||||++|..||..++.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345689999999999999999999998873
No 431
>PRK14526 adenylate kinase; Provisional
Probab=96.14 E-value=0.005 Score=61.23 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
.++|.||||+|||++++.||+.++.++ +++.+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 378999999999999999999988654 5555553
No 432
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.062 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.++|.|+.|+|||+|+++|+..+
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 433
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.11 E-value=0.011 Score=62.59 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..+|+.||+|+|||++++++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4589999999999999999998764
No 434
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.10 E-value=0.058 Score=56.14 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=32.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCccccccccchHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTLTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l~~k~~G~~e~~vr~lF~~ 301 (577)
.+-|.|.+|||||+++|.|..-..-. -+.+++.++......+-...+.++.+.
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~ 95 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEK 95 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHH
Confidence 46799999999999999999765421 244454444332211223445555554
No 435
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.09 E-value=0.089 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+++.||+||||++|.|++|.-.
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 48999999999999999999764
No 436
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.09 E-value=0.028 Score=59.98 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.5
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+..+.+.|+.|||||++.++|...+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 357889999999999999999988753
No 437
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.012 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.+.||.|+|||+|++.|+..+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.07 E-value=0.024 Score=58.66 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=27.6
Q ss_pred eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCccc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTLT 284 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l~ 284 (577)
+.+.||.|||||+|.|+|+.-+.. --+.++..++.
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 679999999999999999987752 34666666553
No 439
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.098 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999654
No 440
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.03 E-value=0.014 Score=63.93 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
-+++.||+|+|||+|++.|++.....
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhccc
Confidence 48999999999999999999986543
No 441
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.02 E-value=0.033 Score=59.63 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=25.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~ 282 (577)
..|+|+||||||.|+..+|-.+. ...++++...
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 68999999999999998875432 4667777643
No 442
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.02 E-value=0.014 Score=55.98 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=40.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccccccc---ch----HHHHHHHHHHhhhh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRG---ES----EKLVRLLFEMVSFL 305 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G---~~----e~~vr~lF~~a~~~ 305 (577)
-|.|.|.+|+|||+||++|.+.+ |.+.+.+++..+...+.. -+ ..+++.+.+.|..+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll 70 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLL 70 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999887 689999998877654321 11 35556555555444
No 443
>KOG0058|consensus
Probab=96.02 E-value=0.027 Score=65.04 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+-|.||.|.|||++|..|-+-.
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999998765
No 444
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.02 E-value=0.095 Score=52.80 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=29.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+.+|++|+||||||.++..++.+. |-++++|+..+.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 568999999999999999877554 678888887643
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.01 E-value=0.0083 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.+.|++|+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999996
No 446
>PLN02674 adenylate kinase
Probab=96.00 E-value=0.0088 Score=61.14 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=29.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
..|+|.||||+||+++|+.||+.+++ ..++..+++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~--~his~Gdll 66 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDML 66 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHH
Confidence 56999999999999999999999885 455666553
No 447
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.99 E-value=0.032 Score=58.82 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
-++++|+||+|||.++..+|-.+ +...++++...
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 46899999999999999887533 34677777653
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.98 E-value=0.16 Score=49.00 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 449
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.96 E-value=0.11 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.+.||+|.|||++.|.|..+..
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 67899999999999999998764
No 450
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.96 E-value=0.019 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
|.++.+.+.+.+... ...+.+||.+|+|+|||.++-.++.++..+++.+-..
T Consensus 8 Q~~ai~~i~~~~~~~----~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~ 59 (184)
T PF04851_consen 8 QQEAIARIINSLENK----KEERRVLLNAPTGSGKTIIALALILELARKVLIVAPN 59 (184)
T ss_dssp HHHHHHHHHHHHHTT----SGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESS
T ss_pred HHHHHHHHHHHHHhc----CCCCCEEEEECCCCCcChhhhhhhhccccceeEecCH
Confidence 566677777766443 2236899999999999999998777776677776543
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.96 E-value=0.0062 Score=58.32 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=24.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
.++|.||+|+|||+|++.|+..++..|+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 4789999999999999999998876543
No 452
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.95 E-value=0.0086 Score=60.76 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=28.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
-++++||+|||||.+|-++|+..|.|++..+.-.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 46899999999999999999999999999887654
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.94 E-value=0.11 Score=57.50 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=27.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHH----hCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE----CGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e----l~~~fv~v~~s 281 (577)
..+|+.|+||||||++|..++.+ .|-+.++|...
T Consensus 22 ~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 22 RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 56899999999999999988543 25788888875
No 454
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.94 E-value=0.11 Score=50.20 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=38.4
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
|...+-++.++-...|.++++||-..- .+...+..+..+|..+.... ..||.+|..++.+...+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~--------LD~~~~~~l~~~l~~~~~~~--------~tvi~~sh~~~~~~~~~ 202 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSA--------LDPELVGEVLDVMKDLAEEG--------MTMVVVTHEMGFAREVA 202 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccC--------CCHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHHhC
Confidence 334455566677889999999996432 23333444445555443211 24667778777765544
Q ss_pred h
Q psy16204 481 L 481 (577)
Q Consensus 481 l 481 (577)
-
T Consensus 203 d 203 (213)
T cd03262 203 D 203 (213)
T ss_pred C
Confidence 3
No 455
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.94 E-value=0.067 Score=61.19 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..+|+.|++|||||+|.|+||.-.
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999999653
No 456
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.93 E-value=0.024 Score=55.42 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=21.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999876
No 457
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.93 E-value=0.15 Score=49.91 Aligned_cols=66 Identities=11% Similarity=0.001 Sum_probs=40.3
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
+...+-++.++-...|.++++||-..- -+...++.+.++|..+..-. ..||.+|...+.+...+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~--------LD~~~~~~l~~~l~~~~~~~--------~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 141 GQKKRLALARLWLSPAPLWLLDEPYAN--------LDLEGITLVNRMISAHLRGG--------GAALVTTHGAYAAPPVR 204 (214)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccc--------CCHHHHHHHHHHHHHHHhCC--------CEEEEEecChhhhhhhc
Confidence 344555666777889999999997532 23333444555555443211 24667888887777665
Q ss_pred hc
Q psy16204 481 LE 482 (577)
Q Consensus 481 lr 482 (577)
-+
T Consensus 205 ~~ 206 (214)
T PRK13543 205 TR 206 (214)
T ss_pred ce
Confidence 44
No 458
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.92 E-value=0.1 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.||.|+|||+|++.|+..+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999765
No 459
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.06 Score=55.49 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=25.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLT 284 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~ 284 (577)
.+=+.|++|||||+|+|+||.-.. .--+.+++..+.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 356999999999999999996543 223455554443
No 460
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.008 Score=59.22 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=25.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
.-+++.|+||+|||++|+.||..++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3578999999999999999999988754
No 461
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.90 E-value=0.016 Score=62.58 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+|+.||+|+|||++++++...+.
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 462
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.13 Score=55.56 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||+|||||+|.|.||.-.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999654
No 463
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.90 E-value=0.12 Score=52.30 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=40.2
Q ss_pred hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh
Q psy16204 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL 481 (577)
Q Consensus 402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all 481 (577)
...+-++..+-...|.+|++||-..-. +...+..+..+|..+-.-. ..-||.+|..++.+...+-
T Consensus 125 q~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~L~~~~~~~-------g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 125 ETQRVLLARALLNRPQLLVLDEPTQGV--------DVNGQVALYDLIDQLRREL-------DCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHHhc-------CCEEEEEecCHHHHHHhCC
Confidence 344445666777899999999975332 2333333444444332111 1357778888887776665
Q ss_pred cCccc
Q psy16204 482 EGVVI 486 (577)
Q Consensus 482 rr~~i 486 (577)
+-+.+
T Consensus 190 ~i~~l 194 (251)
T PRK09544 190 EVLCL 194 (251)
T ss_pred EEEEE
Confidence 54433
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.90 E-value=0.092 Score=50.84 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=38.1
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
|...+-++.++-...|.+|++||-..-. +...+..+..+|..+.... ..||.+|..++.+...+
T Consensus 141 G~~qrl~la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~~--------~tii~~tH~~~~~~~~~ 204 (214)
T TIGR02673 141 GEQQRVAIARAIVNSPPLLLADEPTGNL--------DPDLSERILDLLKRLNKRG--------TTVIVATHDLSLVDRVA 204 (214)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHHhc
Confidence 3445556666778899999999974332 3333444445554442211 35667777777666544
No 465
>PF13245 AAA_19: Part of AAA domain
Probab=95.89 E-value=0.013 Score=49.58 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEecCCCCChH-HHHHHHHHHh------CCeEEEEec
Q psy16204 250 ALERHSHGTGKT-MLAKAVATEC------GTTFFNVSS 280 (577)
Q Consensus 250 ILL~GPpGtGKT-~LAkaLA~el------~~~fv~v~~ 280 (577)
+++.|||||||| +++..++..+ +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 5666666665 344555544
No 466
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.88 E-value=0.14 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 467
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.88 E-value=0.12 Score=55.72 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||+|||||+|.+.||...
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999754
No 468
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.17 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.||.|+|||+|++.|+...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 469
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.85 E-value=0.063 Score=55.48 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=30.5
Q ss_pred hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG 453 (577)
Q Consensus 402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~ 453 (577)
=.++.++.+|-...|.+||+||=.. +.+.....++.+|+..+..
T Consensus 150 M~KRvaLARAialdPell~~DEPts--------GLDPI~a~~~~~LI~~L~~ 193 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPTS--------GLDPISAGVIDELIRELND 193 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCC--------CCCcchHHHHHHHHHHHHH
Confidence 3567788889999999999999532 2233444667777766653
No 470
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.023 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+.+.||.|+|||+|.+.|+....
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999998753
No 471
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.84 E-value=0.007 Score=56.97 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-+++.||+|+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3689999999999999999998753
No 472
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.017 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-+.|.||.|+|||+|++.|+..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999953
No 473
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.83 E-value=0.011 Score=63.95 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..+|+.||||||||+|++.+++.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999998743
No 474
>PRK13975 thymidylate kinase; Provisional
Probab=95.82 E-value=0.01 Score=56.44 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
-|.|.|++|+|||++++.||+.++..+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~~ 31 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAFWT 31 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4789999999999999999999986443
No 475
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.2 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+..+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 476
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.81 E-value=0.096 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.||.|+|||+|++.|+...
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 477
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.81 E-value=0.12 Score=51.06 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=19.0
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-++|.||.|+|||++.+.++.
T Consensus 31 ~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999873
No 478
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.012 Score=55.43 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=27.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-+.|.|+||+|||++|+.|+..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 357899999999999999999987 34566666543
No 479
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.78 E-value=0.009 Score=56.31 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=23.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.-|+|.|++|+|||++|+.|+..+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999986
No 480
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.77 E-value=0.03 Score=54.37 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=38.0
Q ss_pred hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh
Q psy16204 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL 481 (577)
Q Consensus 402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all 481 (577)
...+-++.++-...|.+|++||--.-. +...+..+..+|..+.. . ...||.+|..++.+...+-
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-------~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGL--------APKIVEEIFEAIRELRD-E-------GVTILLVEQNARFALEIAD 200 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccC--------CHHHHHHHHHHHHHHHH-C-------CCEEEEEeCCHHHHHHhcc
Confidence 344555666777899999999974322 33333444444444432 1 1357777777776665444
Q ss_pred c
Q psy16204 482 E 482 (577)
Q Consensus 482 r 482 (577)
+
T Consensus 201 ~ 201 (222)
T cd03224 201 R 201 (222)
T ss_pred E
Confidence 3
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.77 E-value=0.019 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.-++|.|+.|+|||+++|.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 358899999999999999999999864
No 482
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.15 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||+|+|||+|.+.||...
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 36799999999999999999764
No 483
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.75 E-value=0.013 Score=56.82 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC-CeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG-TTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~s~l 283 (577)
.-|.|.|++|||||+|+++|++.++ ..+..++..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 4588999999999999999999984 34555555544
No 484
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.75 E-value=0.035 Score=58.93 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 231 AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 231 ~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|..++... +++|+.|++|+|||+++++|...+
T Consensus 135 ~~L~~~v~~~-------~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 135 SVIRSAIDSR-------LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHcC-------CeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555432 589999999999999999999876
No 485
>PRK14529 adenylate kinase; Provisional
Probab=95.74 E-value=0.0077 Score=60.72 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=28.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
.|+|.||||+|||++++.||+.++.+. ++..+++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhh
Confidence 478999999999999999999998765 44455543
No 486
>PLN02199 shikimate kinase
Probab=95.73 E-value=0.0093 Score=62.87 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=29.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
++|+|.|.+|+|||++++.||+.+|++|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 48999999999999999999999999987655
No 487
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.73 E-value=0.036 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.++++.||+|+|||+++++++..+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 5899999999999999999997753
No 488
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.72 E-value=0.071 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.+.||.|+|||+|+++|+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998764
No 489
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.033 Score=54.71 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.||.|+|||+|++.|+..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999765
No 490
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.72 E-value=0.035 Score=54.02 Aligned_cols=65 Identities=29% Similarity=0.263 Sum_probs=39.2
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
|...+-++.++-...|.+|++||-..-. +......+..+|..+.. . ..||.+|..++.+...+
T Consensus 137 G~~qrv~la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~--------~-~tii~~sH~~~~~~~~~ 199 (220)
T cd03263 137 GMKRKLSLAIALIGGPSVLLLDEPTSGL--------DPASRRAIWDLILEVRK--------G-RSIILTTHSMDEAEALC 199 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCC--------CHHHHHHHHHHHHHHhc--------C-CEEEEEcCCHHHHHHhc
Confidence 3445556667778899999999975433 22233333344443322 1 36788888888776654
Q ss_pred hc
Q psy16204 481 LE 482 (577)
Q Consensus 481 lr 482 (577)
-+
T Consensus 200 d~ 201 (220)
T cd03263 200 DR 201 (220)
T ss_pred CE
Confidence 43
No 491
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.71 E-value=0.022 Score=61.78 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=31.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
.++++||.+||||++++.+.+...-.+++++.++...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~ 75 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRL 75 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhc
Confidence 7899999999999999999988766577777777643
No 492
>PRK04132 replication factor C small subunit; Provisional
Probab=95.70 E-value=0.0063 Score=71.77 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=43.7
Q ss_pred HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHH
Q psy16204 207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTML 263 (577)
Q Consensus 207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~L 263 (577)
++++|..++.+..|+||+|++.+++.|+.++... ...++||+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~-----~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEECCCCCCcccc
Confidence 4568889999999999999999999999999652 234588999999999643
No 493
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.12 Score=52.00 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
|...+-++.++-...|.|+++||-..-. +...+..+..+|..+.. . ..||.+|++++.+...+
T Consensus 159 Gq~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~--------~tiiivtH~~~~~~~~~ 221 (259)
T PRK14274 159 GQQQRLCIARALATNPDVLLMDEPTSAL--------DPVSTRKIEELILKLKE-K--------YTIVIVTHNMQQAARVS 221 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHhc-C--------CEEEEEEcCHHHHHHhC
Confidence 3344555666778899999999975433 22333334444444421 1 35777788877766654
Q ss_pred hc
Q psy16204 481 LE 482 (577)
Q Consensus 481 lr 482 (577)
-+
T Consensus 222 d~ 223 (259)
T PRK14274 222 DQ 223 (259)
T ss_pred CE
Confidence 44
No 494
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.69 E-value=0.2 Score=49.56 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=41.2
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
|...+-++.++-...|.+|++||-..-. +...+..+.++|..+.. . ..||.+|..++.+...+
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~-~--------~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGM--------TDEETEKTAELLKSLAG-K--------HSVVVVEHDMEFVRSIA 209 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCC--------CHHHHHHHHHHHHHHhc-C--------CEEEEEECCHHHHHHhC
Confidence 3445556677888899999999975332 33334444555554432 1 36778888888766655
Q ss_pred hcCc
Q psy16204 481 LEGV 484 (577)
Q Consensus 481 lrr~ 484 (577)
-+..
T Consensus 210 d~i~ 213 (242)
T TIGR03411 210 DKVT 213 (242)
T ss_pred CEEE
Confidence 4433
No 495
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.69 E-value=0.042 Score=58.76 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~ 282 (577)
-++++|+||+|||.++..+|..+. ...++++...
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 368999999999999998885432 2577777754
No 496
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.68 E-value=0.018 Score=54.79 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=21.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+.|.||.|+|||+|++.|+....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999997753
No 497
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.68 E-value=0.11 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+-.++.||.|+|||.+.++++-.+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999886654
No 498
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.18 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||+|||||+|.+.||...
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 47899999999999999999765
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.67 E-value=0.14 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.|+.|+|||+|++.|+...
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999754
No 500
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.66 E-value=0.01 Score=62.53 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=29.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+-+++.||+|||||+||..||++++..++..++-
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 4578999999999999999999999887766653
Done!