Query psy16204
Match_columns 577
No_of_seqs 310 out of 2574
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 23:28:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 5.1E-48 1.7E-52 438.0 11.2 360 213-576 196-764 (806)
2 4b4t_J 26S protease regulatory 100.0 7.7E-44 2.6E-48 377.2 17.2 231 210-570 137-404 (405)
3 4b4t_I 26S protease regulatory 100.0 3E-42 1E-46 367.7 14.1 226 210-565 171-433 (437)
4 4b4t_L 26S protease subunit RP 100.0 2E-41 6.9E-46 361.7 18.6 226 210-565 170-432 (437)
5 4b4t_H 26S protease regulatory 100.0 3.2E-41 1.1E-45 362.3 19.5 232 210-571 198-467 (467)
6 4b4t_M 26S protease regulatory 100.0 3.1E-41 1.1E-45 360.1 19.2 222 210-561 170-428 (434)
7 4b4t_K 26S protease regulatory 100.0 5.1E-41 1.8E-45 357.8 16.7 225 210-564 161-424 (428)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.5E-39 1.2E-43 328.0 23.9 252 212-576 3-320 (322)
9 3eie_A Vacuolar protein sortin 100.0 9E-39 3.1E-43 322.8 19.2 254 210-576 7-319 (322)
10 2qp9_X Vacuolar protein sortin 100.0 1.2E-37 4.3E-42 320.5 21.6 254 210-576 40-352 (355)
11 2zan_A Vacuolar protein sortin 100.0 4.7E-37 1.6E-41 325.5 17.8 257 207-576 120-442 (444)
12 3cf0_A Transitional endoplasmi 100.0 3.3E-36 1.1E-40 301.9 16.8 250 212-574 6-300 (301)
13 3d8b_A Fidgetin-like protein 1 100.0 5.5E-35 1.9E-39 300.3 22.4 263 197-576 60-355 (357)
14 3b9p_A CG5977-PA, isoform A; A 100.0 3.4E-34 1.2E-38 282.4 19.8 258 203-576 3-293 (297)
15 3vfd_A Spastin; ATPase, microt 100.0 2.3E-33 8E-38 290.1 20.3 259 201-576 95-386 (389)
16 2x8a_A Nuclear valosin-contain 100.0 5.5E-33 1.9E-37 277.3 18.0 231 214-564 3-273 (274)
17 1ypw_A Transitional endoplasmi 100.0 6.6E-34 2.2E-38 322.3 4.4 358 214-575 197-763 (806)
18 3h4m_A Proteasome-activating n 100.0 9.5E-30 3.2E-34 248.8 21.6 235 213-577 9-282 (285)
19 3hu3_A Transitional endoplasmi 100.0 1.2E-29 4.2E-34 273.5 12.3 230 215-558 198-462 (489)
20 2ce7_A Cell division protein F 100.0 9.6E-28 3.3E-32 258.6 22.5 212 215-557 10-258 (476)
21 1lv7_A FTSH; alpha/beta domain 100.0 2.4E-27 8.3E-32 229.9 23.0 215 212-557 3-254 (257)
22 2qz4_A Paraplegin; AAA+, SPG7, 100.0 8.2E-28 2.8E-32 231.0 15.8 212 216-558 1-252 (262)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 5.2E-26 1.8E-30 246.4 16.8 212 216-558 26-274 (499)
24 1ixz_A ATP-dependent metallopr 99.9 1.6E-25 5.5E-30 216.7 18.4 210 212-552 7-253 (254)
25 2r62_A Cell division protease 99.9 4E-28 1.4E-32 235.8 -3.5 218 214-561 4-259 (268)
26 1iy2_A ATP-dependent metallopr 99.9 8.9E-24 3E-28 208.2 19.5 209 213-552 32-277 (278)
27 1g41_A Heat shock protein HSLU 99.9 6.3E-22 2.2E-26 212.0 21.1 344 220-568 14-443 (444)
28 3cf2_A TER ATPase, transitiona 99.9 1.1E-23 3.8E-28 239.3 7.4 235 319-558 198-462 (806)
29 3t15_A Ribulose bisphosphate c 99.9 5.6E-23 1.9E-27 206.1 8.7 161 244-509 33-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 6.6E-23 2.2E-27 217.3 4.0 187 216-513 32-262 (456)
31 1ofh_A ATP-dependent HSL prote 99.8 7.9E-18 2.7E-22 164.6 15.3 232 221-556 15-300 (310)
32 3syl_A Protein CBBX; photosynt 99.7 3.7E-18 1.3E-22 168.3 11.8 183 220-523 30-267 (309)
33 3uk6_A RUVB-like 2; hexameric 99.7 1.2E-17 4E-22 168.6 14.2 83 218-301 41-125 (368)
34 3pfi_A Holliday junction ATP-d 99.7 7.8E-17 2.7E-21 161.4 18.3 76 208-283 16-91 (338)
35 1d2n_A N-ethylmaleimide-sensit 99.7 3.3E-16 1.1E-20 153.2 20.8 178 220-514 32-226 (272)
36 3m6a_A ATP-dependent protease 99.7 2.2E-18 7.5E-23 187.5 5.2 69 216-284 76-145 (543)
37 1r6b_X CLPA protein; AAA+, N-t 99.7 7.3E-17 2.5E-21 180.0 15.8 182 182-474 419-609 (758)
38 3hws_A ATP-dependent CLP prote 99.7 7.1E-17 2.4E-21 165.0 11.9 80 222-301 16-107 (363)
39 3pxi_A Negative regulator of g 99.6 1.1E-15 3.7E-20 171.2 16.3 106 183-288 453-565 (758)
40 1hqc_A RUVB; extended AAA-ATPa 99.6 1.3E-15 4.4E-20 150.8 13.9 71 213-283 4-74 (324)
41 1um8_A ATP-dependent CLP prote 99.6 8.9E-16 3E-20 157.3 10.2 79 221-299 21-126 (376)
42 2chg_A Replication factor C sm 99.6 3.9E-14 1.3E-18 129.3 19.2 69 210-283 6-79 (226)
43 4fcw_A Chaperone protein CLPB; 99.6 3.9E-15 1.3E-19 146.5 13.2 67 219-285 15-88 (311)
44 1jbk_A CLPB protein; beta barr 99.6 2.6E-15 8.7E-20 134.1 10.7 86 210-300 11-108 (195)
45 1qvr_A CLPB protein; coiled co 99.6 5.8E-15 2E-19 167.8 15.9 103 184-286 521-630 (854)
46 2p65_A Hypothetical protein PF 99.6 1.8E-15 6E-20 135.8 7.6 67 213-284 14-90 (187)
47 3u61_B DNA polymerase accessor 99.6 4.1E-14 1.4E-18 141.1 17.0 71 209-283 14-84 (324)
48 1njg_A DNA polymerase III subu 99.6 7.4E-14 2.5E-18 128.3 16.8 61 210-274 12-72 (250)
49 3pvs_A Replication-associated 99.6 2E-14 6.9E-19 153.3 14.3 80 210-301 15-97 (447)
50 2v1u_A Cell division control p 99.5 4.5E-13 1.5E-17 134.0 19.5 65 219-284 17-90 (387)
51 1in4_A RUVB, holliday junction 99.5 1.1E-12 3.7E-17 133.4 21.1 72 211-282 15-86 (334)
52 1sxj_A Activator 1 95 kDa subu 99.5 9.2E-14 3.1E-18 149.6 13.6 78 208-285 26-115 (516)
53 1sxj_D Activator 1 41 kDa subu 99.5 5.1E-13 1.7E-17 133.1 17.1 70 209-283 25-100 (353)
54 1iqp_A RFCS; clamp loader, ext 99.5 1.5E-12 5.1E-17 127.9 19.0 72 206-282 10-86 (327)
55 1r6b_X CLPA protein; AAA+, N-t 99.5 6.6E-13 2.3E-17 148.2 17.7 81 216-301 181-273 (758)
56 2chq_A Replication factor C sm 99.5 2.3E-13 8E-18 133.1 11.8 69 210-283 6-79 (319)
57 3pxg_A Negative regulator of g 99.5 1.6E-13 5.4E-18 146.4 11.4 84 210-301 169-262 (468)
58 2bjv_A PSP operon transcriptio 99.5 3.4E-13 1.2E-17 131.1 12.3 64 218-284 3-69 (265)
59 1ojl_A Transcriptional regulat 99.4 3.4E-13 1.1E-17 136.2 11.7 61 221-284 2-65 (304)
60 2z4s_A Chromosomal replication 99.4 7.6E-13 2.6E-17 140.3 14.7 64 216-283 100-171 (440)
61 1g8p_A Magnesium-chelatase 38 99.4 2.8E-12 9.7E-17 127.9 17.6 55 214-273 17-71 (350)
62 1fnn_A CDC6P, cell division co 99.4 6.2E-12 2.1E-16 126.4 19.9 64 220-283 16-84 (389)
63 1jr3_A DNA polymerase III subu 99.4 3.5E-12 1.2E-16 128.0 17.7 60 211-274 6-65 (373)
64 1ypw_A Transitional endoplasmi 99.4 6.1E-13 2.1E-17 151.2 13.7 234 321-559 200-463 (806)
65 1l8q_A Chromosomal replication 99.4 7E-13 2.4E-17 132.7 12.4 65 216-283 6-76 (324)
66 3n70_A Transport activator; si 99.4 2.8E-13 9.7E-18 121.7 8.0 60 222-285 2-64 (145)
67 2r44_A Uncharacterized protein 99.4 2.2E-13 7.5E-18 136.5 8.1 62 213-281 19-80 (331)
68 1qvr_A CLPB protein; coiled co 99.4 1E-12 3.6E-17 149.4 14.6 87 210-301 159-257 (854)
69 3bos_A Putative DNA replicatio 99.4 1.7E-12 5.9E-17 121.2 13.3 63 217-284 24-92 (242)
70 1sxj_B Activator 1 37 kDa subu 99.4 5E-12 1.7E-16 123.9 16.8 68 210-282 10-82 (323)
71 2qby_A CDC6 homolog 1, cell di 99.4 2.1E-11 7E-16 121.6 21.4 64 219-283 18-87 (386)
72 2qby_B CDC6 homolog 3, cell di 99.4 1.4E-11 4.9E-16 124.1 19.0 62 221-283 20-92 (384)
73 3co5_A Putative two-component 99.4 1.5E-13 5.3E-18 123.4 3.1 59 222-284 5-63 (143)
74 1sxj_C Activator 1 40 kDa subu 99.4 8E-11 2.7E-15 119.0 22.6 69 209-282 13-86 (340)
75 3te6_A Regulatory protein SIR3 99.3 2.8E-12 9.5E-17 132.1 11.6 63 223-286 22-94 (318)
76 3pxi_A Negative regulator of g 99.3 1.3E-12 4.6E-17 146.2 8.1 84 210-301 169-262 (758)
77 3cmw_A Protein RECA, recombina 99.3 2.9E-12 9.8E-17 155.2 9.8 160 214-475 1013-1220(1706)
78 3f9v_A Minichromosome maintena 99.3 9.4E-13 3.2E-17 145.1 3.8 57 221-277 295-357 (595)
79 1sxj_E Activator 1 40 kDa subu 99.3 4.9E-11 1.7E-15 119.6 15.4 58 210-271 3-60 (354)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 2.4E-11 8.2E-16 131.9 12.9 54 221-281 22-77 (500)
81 3k1j_A LON protease, ATP-depen 99.3 4.9E-11 1.7E-15 130.9 15.3 54 213-273 33-86 (604)
82 3vlf_B 26S protease regulatory 99.2 3.7E-11 1.3E-15 101.8 8.1 80 475-571 8-88 (88)
83 3aji_B S6C, proteasome (prosom 99.2 1.2E-11 4E-16 102.8 4.5 76 475-568 8-83 (83)
84 1ny5_A Transcriptional regulat 99.1 4.7E-10 1.6E-14 116.9 13.8 62 220-284 136-200 (387)
85 1a5t_A Delta prime, HOLB; zinc 99.1 2.2E-09 7.4E-14 109.2 16.6 46 225-274 6-51 (334)
86 1w5s_A Origin recognition comp 99.1 4E-09 1.4E-13 106.9 18.1 64 219-282 20-96 (412)
87 2gno_A DNA polymerase III, gam 99.1 1.3E-09 4.6E-14 110.7 14.4 52 225-281 1-58 (305)
88 3ec2_A DNA replication protein 99.0 1E-09 3.4E-14 100.7 8.6 68 214-283 3-78 (180)
89 2dzn_B 26S protease regulatory 99.0 1.4E-10 5E-15 96.5 2.4 76 475-567 5-81 (82)
90 2krk_A 26S protease regulatory 98.9 8.4E-10 2.9E-14 93.4 6.0 66 476-558 19-84 (86)
91 3kw6_A 26S protease regulatory 98.8 3.7E-09 1.3E-13 86.8 6.1 67 475-558 10-76 (78)
92 3dzd_A Transcriptional regulat 98.8 3.2E-08 1.1E-12 102.8 12.9 62 221-285 129-192 (368)
93 2w58_A DNAI, primosome compone 98.7 1.2E-08 4.2E-13 94.7 6.9 66 217-283 21-93 (202)
94 2vhj_A Ntpase P4, P4; non- hyd 98.5 5.6E-08 1.9E-12 101.0 5.5 31 248-278 124-156 (331)
95 4akg_A Glutathione S-transfera 98.5 1.8E-07 6.3E-12 117.9 10.9 38 248-285 1268-1306(2695)
96 2qgz_A Helicase loader, putati 98.5 9.1E-08 3.1E-12 96.9 5.4 64 218-283 121-192 (308)
97 2kjq_A DNAA-related protein; s 98.4 2.8E-07 9.5E-12 84.1 6.4 36 248-283 37-75 (149)
98 2qen_A Walker-type ATPase; unk 98.3 7.9E-06 2.7E-10 80.4 14.7 59 215-282 6-64 (350)
99 2fna_A Conserved hypothetical 98.3 1.1E-05 3.7E-10 79.4 15.6 60 215-283 7-66 (357)
100 2r2a_A Uncharacterized protein 98.2 1.9E-06 6.4E-11 82.8 6.8 61 414-486 86-146 (199)
101 3f8t_A Predicted ATPase involv 98.2 4.6E-06 1.6E-10 90.8 10.0 50 223-273 215-265 (506)
102 3cmu_A Protein RECA, recombina 98.1 5.4E-06 1.9E-10 102.4 10.6 54 402-455 1492-1550(2050)
103 4akg_A Glutathione S-transfera 98.1 2.2E-05 7.6E-10 99.4 14.5 52 227-285 632-683 (2695)
104 1tue_A Replication protein E1; 97.9 7.2E-06 2.5E-10 80.5 5.3 43 228-274 43-85 (212)
105 1svm_A Large T antigen; AAA+ f 97.8 2E-05 6.7E-10 82.9 6.6 30 248-277 170-199 (377)
106 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00025 8.6E-09 65.6 13.4 34 248-281 24-60 (235)
107 1ye8_A Protein THEP1, hypothet 97.7 0.00032 1.1E-08 65.7 12.5 27 249-275 2-28 (178)
108 1g41_A Heat shock protein HSLU 97.7 5.2E-06 1.8E-10 89.2 -0.8 119 358-490 49-173 (444)
109 2cvh_A DNA repair and recombin 97.6 0.00055 1.9E-08 63.3 12.3 34 249-282 22-55 (220)
110 1qhx_A CPT, protein (chloramph 97.5 3.9E-05 1.3E-09 69.3 3.2 36 248-283 4-39 (178)
111 3vkg_A Dynein heavy chain, cyt 97.4 0.00068 2.3E-08 87.2 13.8 37 249-285 606-642 (3245)
112 3trf_A Shikimate kinase, SK; a 97.4 6.7E-05 2.3E-09 68.3 3.6 31 248-278 6-36 (185)
113 1z6t_A APAF-1, apoptotic prote 97.4 0.011 3.8E-07 63.3 20.9 49 218-269 121-169 (591)
114 1n0w_A DNA repair protein RAD5 97.4 0.00088 3E-08 62.9 10.4 34 249-282 26-68 (243)
115 3iij_A Coilin-interacting nucl 97.3 0.00012 4.3E-09 66.5 3.9 31 248-278 12-42 (180)
116 2p5t_B PEZT; postsegregational 97.3 0.00025 8.6E-09 69.0 6.2 53 231-283 16-68 (253)
117 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.8E-09 64.7 4.0 31 249-279 3-33 (173)
118 3vkg_A Dynein heavy chain, cyt 97.3 0.00018 6.1E-09 92.4 6.3 38 248-285 1305-1343(3245)
119 4a74_A DNA repair and recombin 97.3 0.00062 2.1E-08 63.3 8.4 34 249-282 27-69 (231)
120 3sfz_A APAF-1, apoptotic pepti 97.3 0.0044 1.5E-07 70.9 16.5 52 216-270 119-170 (1249)
121 2cdn_A Adenylate kinase; phosp 97.2 0.00018 6E-09 66.8 4.0 35 244-278 17-51 (201)
122 1via_A Shikimate kinase; struc 97.2 0.00022 7.5E-09 64.7 4.5 29 249-277 6-34 (175)
123 2ehv_A Hypothetical protein PH 97.2 0.0023 7.8E-08 60.2 11.6 66 400-476 120-185 (251)
124 3vaa_A Shikimate kinase, SK; s 97.2 0.00016 5.5E-09 67.4 3.5 32 248-279 26-57 (199)
125 2dr3_A UPF0273 protein PH0284; 97.2 0.007 2.4E-07 56.7 14.8 34 249-282 25-61 (247)
126 3hr8_A Protein RECA; alpha and 97.2 0.0013 4.3E-08 68.8 10.5 36 248-283 62-100 (356)
127 2iyv_A Shikimate kinase, SK; t 97.2 0.00017 5.7E-09 65.8 3.4 29 249-277 4-32 (184)
128 1xp8_A RECA protein, recombina 97.2 0.0012 4.1E-08 69.0 10.2 35 248-282 75-112 (366)
129 1gvn_B Zeta; postsegregational 97.2 0.00044 1.5E-08 69.3 6.6 39 246-284 32-70 (287)
130 1zuh_A Shikimate kinase; alpha 97.2 0.00029 9.9E-09 63.4 4.6 31 248-278 8-38 (168)
131 3dm5_A SRP54, signal recogniti 97.2 0.025 8.7E-07 60.8 20.3 37 247-283 100-139 (443)
132 3lw7_A Adenylate kinase relate 97.2 0.0002 7E-09 62.9 3.3 29 249-278 3-31 (179)
133 1ukz_A Uridylate kinase; trans 97.1 0.00033 1.1E-08 64.8 4.4 39 240-278 8-46 (203)
134 2rhm_A Putative kinase; P-loop 97.1 0.00034 1.2E-08 63.6 4.3 30 248-277 6-35 (193)
135 1kag_A SKI, shikimate kinase I 97.1 0.00037 1.3E-08 62.6 4.5 30 248-277 5-34 (173)
136 1e6c_A Shikimate kinase; phosp 97.1 0.00038 1.3E-08 62.3 4.6 29 249-277 4-32 (173)
137 3kl4_A SRP54, signal recogniti 97.1 0.01 3.5E-07 63.5 16.1 36 247-282 97-135 (433)
138 1tev_A UMP-CMP kinase; ploop, 97.0 0.00046 1.6E-08 62.4 4.6 30 248-277 4-33 (196)
139 3lda_A DNA repair protein RAD5 97.0 0.002 6.7E-08 68.2 10.0 33 250-282 181-222 (400)
140 2c95_A Adenylate kinase 1; tra 97.0 0.00032 1.1E-08 63.9 3.5 31 248-278 10-40 (196)
141 1ak2_A Adenylate kinase isoenz 97.0 0.0005 1.7E-08 65.8 5.0 33 246-278 15-47 (233)
142 2ze6_A Isopentenyl transferase 97.0 0.00038 1.3E-08 68.2 4.2 32 249-280 3-34 (253)
143 2z43_A DNA repair and recombin 97.0 0.001 3.5E-08 67.3 7.4 35 248-282 108-151 (324)
144 3cm0_A Adenylate kinase; ATP-b 97.0 0.00046 1.6E-08 62.7 4.3 29 249-277 6-34 (186)
145 1nlf_A Regulatory protein REPA 97.0 0.0099 3.4E-07 58.2 14.1 23 249-271 32-54 (279)
146 2bwj_A Adenylate kinase 5; pho 97.0 0.00035 1.2E-08 63.8 3.4 31 248-278 13-43 (199)
147 1y63_A LMAJ004144AAA protein; 97.0 0.00033 1.1E-08 64.6 3.2 31 248-278 11-42 (184)
148 3cmu_A Protein RECA, recombina 97.0 0.00072 2.5E-08 84.0 7.0 37 249-285 734-773 (2050)
149 2zts_A Putative uncharacterize 97.0 0.0041 1.4E-07 58.3 10.6 52 401-455 121-172 (251)
150 2zr9_A Protein RECA, recombina 97.0 0.0041 1.4E-07 64.3 11.4 35 248-282 62-99 (349)
151 1kht_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 62.4 3.8 24 249-272 5-28 (192)
152 2vli_A Antibiotic resistance p 97.0 0.00039 1.3E-08 62.8 3.3 29 248-276 6-34 (183)
153 1qf9_A UMP/CMP kinase, protein 96.9 0.00063 2.1E-08 61.4 4.5 31 248-278 7-37 (194)
154 1cr0_A DNA primase/helicase; R 96.9 0.009 3.1E-07 58.8 13.1 33 249-281 37-73 (296)
155 3t61_A Gluconokinase; PSI-biol 96.9 0.0006 2.1E-08 63.2 4.4 31 247-277 18-48 (202)
156 2pt5_A Shikimate kinase, SK; a 96.9 0.00064 2.2E-08 60.7 4.4 29 249-277 2-30 (168)
157 3fb4_A Adenylate kinase; psych 96.9 0.00045 1.5E-08 64.5 3.4 30 249-278 2-31 (216)
158 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00042 1.4E-08 72.8 3.5 74 224-301 2-93 (359)
159 3bh0_A DNAB-like replicative h 96.9 0.011 3.9E-07 59.6 13.9 33 249-281 70-105 (315)
160 3dl0_A Adenylate kinase; phosp 96.9 0.00043 1.5E-08 64.8 3.2 30 249-278 2-31 (216)
161 1ly1_A Polynucleotide kinase; 96.9 0.00042 1.5E-08 62.0 3.1 27 248-274 3-30 (181)
162 1jr3_D DNA polymerase III, del 96.9 0.0043 1.5E-07 62.4 10.7 26 246-271 17-42 (343)
163 1aky_A Adenylate kinase; ATP:A 96.9 0.0007 2.4E-08 63.8 4.6 31 248-278 5-35 (220)
164 1zd8_A GTP:AMP phosphotransfer 96.9 0.00046 1.6E-08 65.5 3.2 31 248-278 8-38 (227)
165 1u0j_A DNA replication protein 96.9 0.00066 2.3E-08 68.6 4.4 26 248-273 105-130 (267)
166 1zp6_A Hypothetical protein AT 96.8 0.00046 1.6E-08 62.9 2.8 36 248-283 10-45 (191)
167 1q57_A DNA primase/helicase; d 96.8 0.011 3.7E-07 63.2 13.8 33 249-281 244-280 (503)
168 1v5w_A DMC1, meiotic recombina 96.8 0.0037 1.3E-07 64.0 9.7 34 249-282 124-166 (343)
169 2px0_A Flagellar biosynthesis 96.8 0.044 1.5E-06 55.3 17.4 92 186-282 42-144 (296)
170 2jaq_A Deoxyguanosine kinase; 96.8 0.0009 3.1E-08 61.0 4.3 29 249-277 2-30 (205)
171 1knq_A Gluconate kinase; ALFA/ 96.8 0.001 3.4E-08 60.1 4.6 30 248-277 9-38 (175)
172 3be4_A Adenylate kinase; malar 96.8 0.00095 3.3E-08 63.1 4.5 30 249-278 7-36 (217)
173 1nks_A Adenylate kinase; therm 96.8 0.00061 2.1E-08 61.5 3.0 33 249-281 3-38 (194)
174 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 4.1E-08 59.7 4.8 31 249-279 2-35 (195)
175 1pzn_A RAD51, DNA repair and r 96.7 0.0094 3.2E-07 61.4 12.0 35 249-283 133-176 (349)
176 1u94_A RECA protein, recombina 96.7 0.0034 1.2E-07 65.2 8.8 35 248-282 64-101 (356)
177 1zak_A Adenylate kinase; ATP:A 96.7 0.00083 2.8E-08 63.4 3.7 29 248-276 6-34 (222)
178 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.001 3.4E-08 65.1 4.2 37 248-284 5-44 (260)
179 1e4v_A Adenylate kinase; trans 96.7 0.0012 4E-08 62.1 4.3 30 249-278 2-31 (214)
180 2i1q_A DNA repair and recombin 96.6 0.0029 9.8E-08 63.5 7.1 23 249-271 100-122 (322)
181 2q6t_A DNAB replication FORK h 96.6 0.028 9.4E-07 59.4 15.0 33 249-281 202-238 (444)
182 4eun_A Thermoresistant glucoki 96.6 0.0014 4.8E-08 61.0 4.6 34 248-283 30-63 (200)
183 4gp7_A Metallophosphoesterase; 96.6 0.004 1.4E-07 57.0 7.5 20 249-268 11-30 (171)
184 3tlx_A Adenylate kinase 2; str 96.6 0.002 6.9E-08 62.5 5.7 31 248-278 30-60 (243)
185 3sr0_A Adenylate kinase; phosp 96.6 0.0014 4.9E-08 62.9 4.6 32 250-283 3-34 (206)
186 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5.1E-08 61.1 4.6 29 249-277 7-35 (227)
187 2if2_A Dephospho-COA kinase; a 96.6 0.00099 3.4E-08 61.6 3.2 30 249-279 3-32 (204)
188 2xb4_A Adenylate kinase; ATP-b 96.6 0.0016 5.4E-08 62.1 4.5 29 249-277 2-30 (223)
189 2z0h_A DTMP kinase, thymidylat 96.5 0.002 6.8E-08 58.7 4.8 31 250-280 3-36 (197)
190 3crm_A TRNA delta(2)-isopenten 96.5 0.0016 5.4E-08 67.4 4.6 35 248-282 6-40 (323)
191 2pez_A Bifunctional 3'-phospho 96.5 0.002 6.8E-08 58.6 4.8 35 248-282 6-43 (179)
192 3umf_A Adenylate kinase; rossm 96.5 0.0018 6.3E-08 63.0 4.7 34 248-283 30-63 (217)
193 2r6a_A DNAB helicase, replicat 96.5 0.019 6.4E-07 60.8 12.6 33 249-281 205-241 (454)
194 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.6E-08 59.3 4.4 30 249-278 4-33 (208)
195 4b4t_J 26S protease regulatory 96.4 0.00048 1.7E-08 73.3 -0.1 65 315-379 138-202 (405)
196 2fz4_A DNA repair protein RAD2 96.4 0.032 1.1E-06 53.9 12.5 33 249-281 110-142 (237)
197 2v54_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 59.5 3.4 32 248-279 5-37 (204)
198 3upu_A ATP-dependent DNA helic 96.3 0.0039 1.3E-07 66.0 6.2 59 207-271 10-69 (459)
199 2plr_A DTMP kinase, probable t 96.3 0.0021 7.2E-08 58.9 3.7 26 249-274 6-31 (213)
200 2c9o_A RUVB-like 1; hexameric 96.3 0.013 4.6E-07 61.9 10.3 120 416-555 296-437 (456)
201 1jjv_A Dephospho-COA kinase; P 96.3 0.0023 7.8E-08 59.4 3.7 28 249-277 4-31 (206)
202 1vma_A Cell division protein F 96.3 0.13 4.5E-06 52.3 16.9 88 186-281 48-141 (306)
203 3uie_A Adenylyl-sulfate kinase 96.3 0.0025 8.4E-08 59.4 3.8 36 248-283 26-64 (200)
204 2bbw_A Adenylate kinase 4, AK4 96.2 0.0027 9.4E-08 60.9 4.0 29 248-276 28-56 (246)
205 2wwf_A Thymidilate kinase, put 96.2 0.0011 3.7E-08 61.2 1.1 29 248-276 11-39 (212)
206 2xau_A PRE-mRNA-splicing facto 96.2 0.033 1.1E-06 63.4 13.2 22 249-270 111-132 (773)
207 3io5_A Recombination and repai 96.2 0.0084 2.9E-07 62.5 7.5 34 250-283 31-69 (333)
208 3bgw_A DNAB-like replicative h 96.1 0.044 1.5E-06 58.4 13.1 33 249-281 199-234 (444)
209 1uf9_A TT1252 protein; P-loop, 96.1 0.0032 1.1E-07 57.5 3.7 29 248-277 9-37 (203)
210 3nwj_A ATSK2; P loop, shikimat 96.1 0.0042 1.4E-07 61.5 4.6 31 248-278 49-79 (250)
211 2grj_A Dephospho-COA kinase; T 96.0 0.0034 1.2E-07 59.6 3.6 30 249-278 14-43 (192)
212 2h92_A Cytidylate kinase; ross 96.0 0.0047 1.6E-07 57.6 4.5 29 249-277 5-33 (219)
213 3r20_A Cytidylate kinase; stru 96.0 0.0045 1.6E-07 61.0 4.6 30 248-277 10-39 (233)
214 1nn5_A Similar to deoxythymidy 96.0 0.0016 5.5E-08 60.1 1.2 27 248-274 10-36 (215)
215 1uj2_A Uridine-cytidine kinase 96.0 0.0047 1.6E-07 59.7 4.5 38 248-285 23-68 (252)
216 3a8t_A Adenylate isopentenyltr 96.0 0.0025 8.4E-08 66.5 2.7 34 248-281 41-74 (339)
217 2b8t_A Thymidine kinase; deoxy 96.0 0.03 1E-06 54.7 10.0 32 249-280 14-48 (223)
218 1vht_A Dephospho-COA kinase; s 96.0 0.0049 1.7E-07 57.7 4.3 29 249-278 6-34 (218)
219 3rlf_A Maltose/maltodextrin im 96.0 0.031 1.1E-06 58.9 10.9 23 250-272 32-54 (381)
220 4e22_A Cytidylate kinase; P-lo 96.0 0.0051 1.7E-07 59.9 4.5 29 248-276 28-56 (252)
221 3fvq_A Fe(3+) IONS import ATP- 95.9 0.046 1.6E-06 57.2 11.9 64 402-480 143-206 (359)
222 1g29_1 MALK, maltose transport 95.9 0.042 1.4E-06 57.5 11.3 22 250-271 32-53 (372)
223 1v43_A Sugar-binding transport 95.9 0.036 1.2E-06 58.1 10.8 23 250-272 40-62 (372)
224 2yvu_A Probable adenylyl-sulfa 95.9 0.0055 1.9E-07 56.0 4.0 34 248-281 14-50 (186)
225 1q3t_A Cytidylate kinase; nucl 95.9 0.0063 2.2E-07 58.2 4.6 30 248-277 17-46 (236)
226 3jvv_A Twitching mobility prot 95.9 0.011 3.9E-07 61.3 6.9 23 249-271 125-147 (356)
227 2nq2_C Hypothetical ABC transp 95.8 0.091 3.1E-06 51.7 13.0 24 249-272 33-56 (253)
228 4g1u_C Hemin import ATP-bindin 95.8 0.013 4.3E-07 58.4 6.8 22 250-271 40-61 (266)
229 1t6n_A Probable ATP-dependent 95.8 0.25 8.6E-06 45.7 15.4 24 248-271 52-75 (220)
230 4a1f_A DNAB helicase, replicat 95.8 0.013 4.5E-07 60.7 7.2 33 249-281 48-83 (338)
231 2bdt_A BH3686; alpha-beta prot 95.8 0.0065 2.2E-07 55.5 4.4 25 249-273 4-28 (189)
232 1ltq_A Polynucleotide kinase; 95.8 0.0047 1.6E-07 60.6 3.7 29 248-276 3-32 (301)
233 1g5t_A COB(I)alamin adenosyltr 95.8 0.044 1.5E-06 53.0 10.2 33 249-281 30-65 (196)
234 1vpl_A ABC transporter, ATP-bi 95.8 0.099 3.4E-06 51.7 12.9 24 249-272 43-66 (256)
235 3foz_A TRNA delta(2)-isopenten 95.7 0.0052 1.8E-07 63.6 3.7 35 248-282 11-45 (316)
236 2qor_A Guanylate kinase; phosp 95.7 0.0051 1.8E-07 57.4 3.3 25 248-272 13-37 (204)
237 3fdi_A Uncharacterized protein 95.7 0.0064 2.2E-07 57.7 4.0 29 249-277 8-36 (201)
238 3d3q_A TRNA delta(2)-isopenten 95.7 0.006 2E-07 63.6 3.8 33 248-280 8-40 (340)
239 1z47_A CYSA, putative ABC-tran 95.6 0.1 3.4E-06 54.5 12.8 22 250-271 44-65 (355)
240 1rz3_A Hypothetical protein rb 95.6 0.027 9.3E-07 52.5 7.7 35 248-282 23-60 (201)
241 2olj_A Amino acid ABC transpor 95.6 0.084 2.9E-06 52.5 11.7 24 249-272 52-75 (263)
242 2it1_A 362AA long hypothetical 95.6 0.066 2.3E-06 55.9 11.2 23 250-272 32-54 (362)
243 2yyz_A Sugar ABC transporter, 95.5 0.065 2.2E-06 55.9 11.0 22 250-271 32-53 (359)
244 2f6r_A COA synthase, bifunctio 95.5 0.01 3.5E-07 59.0 4.8 29 248-277 76-104 (281)
245 3llm_A ATP-dependent RNA helic 95.5 0.13 4.3E-06 49.1 12.2 21 248-268 77-97 (235)
246 2qt1_A Nicotinamide riboside k 95.5 0.0059 2E-07 56.7 2.8 29 249-277 23-52 (207)
247 3exa_A TRNA delta(2)-isopenten 95.5 0.0062 2.1E-07 63.2 3.2 33 249-281 5-37 (322)
248 1m7g_A Adenylylsulfate kinase; 95.5 0.0089 3E-07 56.0 3.9 34 248-281 26-63 (211)
249 1oxx_K GLCV, glucose, ABC tran 95.5 0.05 1.7E-06 56.5 9.9 22 250-271 34-55 (353)
250 3tui_C Methionine import ATP-b 95.5 0.19 6.5E-06 52.8 14.3 23 250-272 57-79 (366)
251 4b4t_L 26S protease subunit RP 95.4 0.0025 8.4E-08 68.4 -0.1 64 315-378 171-234 (437)
252 4b4t_M 26S protease regulatory 95.3 0.0028 9.7E-08 67.9 -0.1 62 316-377 172-233 (434)
253 3c8u_A Fructokinase; YP_612366 95.3 0.016 5.4E-07 54.3 5.0 25 248-272 23-47 (208)
254 1kgd_A CASK, peripheral plasma 95.3 0.0088 3E-07 54.9 3.2 24 249-272 7-30 (180)
255 4b4t_H 26S protease regulatory 95.3 0.0029 9.9E-08 68.6 -0.1 61 317-377 201-261 (467)
256 3cmw_A Protein RECA, recombina 95.3 0.017 5.7E-07 71.2 6.3 33 250-282 1434-1469(1706)
257 3zvl_A Bifunctional polynucleo 95.2 0.0067 2.3E-07 63.8 2.5 30 248-277 259-288 (416)
258 4b4t_I 26S protease regulatory 95.2 0.0033 1.1E-07 67.7 0.1 62 316-377 173-234 (437)
259 2j41_A Guanylate kinase; GMP, 95.2 0.0095 3.2E-07 54.6 3.2 23 249-271 8-30 (207)
260 3bor_A Human initiation factor 95.2 0.054 1.8E-06 51.5 8.5 19 248-266 68-86 (237)
261 1sky_E F1-ATPase, F1-ATP synth 95.2 0.029 1E-06 60.9 7.4 25 248-272 152-176 (473)
262 3tr0_A Guanylate kinase, GMP k 95.2 0.01 3.6E-07 54.3 3.3 31 249-281 9-39 (205)
263 3asz_A Uridine kinase; cytidin 95.2 0.011 3.7E-07 54.8 3.4 24 249-272 8-31 (211)
264 1qde_A EIF4A, translation init 95.1 0.15 5E-06 47.4 11.0 24 248-271 52-76 (224)
265 3tau_A Guanylate kinase, GMP k 95.1 0.0094 3.2E-07 56.1 2.8 25 248-272 9-33 (208)
266 3gd7_A Fusion complex of cysti 95.1 0.045 1.5E-06 57.8 8.1 23 249-271 49-71 (390)
267 1s2m_A Putative ATP-dependent 95.1 0.57 1.9E-05 46.9 15.8 22 248-269 59-80 (400)
268 3hdt_A Putative kinase; struct 94.9 0.017 5.9E-07 56.2 4.2 29 249-277 16-44 (223)
269 1gtv_A TMK, thymidylate kinase 94.9 0.0072 2.5E-07 55.8 1.4 25 249-273 2-26 (214)
270 4b4t_K 26S protease regulatory 94.9 0.004 1.4E-07 66.6 -0.4 63 316-378 163-225 (428)
271 1q0u_A Bstdead; DEAD protein, 94.8 0.2 7E-06 46.5 11.0 20 248-267 42-61 (219)
272 3eph_A TRNA isopentenyltransfe 94.7 0.016 5.4E-07 61.9 3.6 32 249-280 4-35 (409)
273 3fmo_B ATP-dependent RNA helic 94.7 0.32 1.1E-05 48.5 12.8 18 248-265 132-149 (300)
274 1tf7_A KAIC; homohexamer, hexa 94.7 0.25 8.4E-06 53.2 12.8 145 250-484 42-204 (525)
275 2z0m_A 337AA long hypothetical 94.7 0.24 8.2E-06 48.0 11.6 34 248-281 32-65 (337)
276 1hv8_A Putative ATP-dependent 94.6 0.31 1.1E-05 47.6 12.3 24 248-271 45-68 (367)
277 2qmh_A HPR kinase/phosphorylas 94.6 0.014 4.8E-07 57.1 2.6 32 248-280 35-66 (205)
278 3d31_A Sulfate/molybdate ABC t 94.6 0.027 9.2E-07 58.5 4.8 23 250-272 29-51 (348)
279 3a00_A Guanylate kinase, GMP k 94.6 0.018 6.3E-07 52.9 3.2 24 249-272 3-26 (186)
280 1ex7_A Guanylate kinase; subst 94.6 0.025 8.4E-07 53.8 4.1 26 249-274 3-28 (186)
281 1x6v_B Bifunctional 3'-phospho 94.5 0.024 8.2E-07 63.5 4.6 36 248-283 53-91 (630)
282 3fe2_A Probable ATP-dependent 94.4 0.38 1.3E-05 45.6 12.1 18 248-265 67-84 (242)
283 3gmt_A Adenylate kinase; ssgci 94.4 0.024 8.1E-07 56.0 3.7 27 250-276 11-37 (230)
284 2iut_A DNA translocase FTSK; n 94.4 0.26 9E-06 54.7 12.3 35 248-282 215-256 (574)
285 2pl3_A Probable ATP-dependent 94.4 0.11 3.9E-06 48.8 8.2 18 248-265 63-80 (236)
286 3ice_A Transcription terminati 94.3 0.085 2.9E-06 56.5 8.0 30 239-271 169-198 (422)
287 3ozx_A RNAse L inhibitor; ATP 94.2 0.36 1.2E-05 52.8 12.9 22 250-271 297-318 (538)
288 3fmp_B ATP-dependent RNA helic 94.2 0.35 1.2E-05 50.4 12.3 18 248-265 132-149 (479)
289 1lvg_A Guanylate kinase, GMP k 94.1 0.027 9.2E-07 52.7 3.4 25 248-272 5-29 (198)
290 2axn_A 6-phosphofructo-2-kinas 94.1 0.021 7.1E-07 62.1 2.9 36 248-283 36-74 (520)
291 4eaq_A DTMP kinase, thymidylat 94.1 0.028 9.7E-07 54.2 3.5 30 248-277 27-58 (229)
292 3dkp_A Probable ATP-dependent 94.0 0.3 1E-05 46.1 10.5 18 248-265 67-84 (245)
293 1a7j_A Phosphoribulokinase; tr 94.0 0.021 7.3E-07 57.2 2.6 35 249-283 7-44 (290)
294 3eiq_A Eukaryotic initiation f 93.9 0.75 2.6E-05 46.0 13.7 20 248-267 78-97 (414)
295 3iuy_A Probable ATP-dependent 93.9 0.27 9.4E-06 45.9 9.8 18 248-265 58-75 (228)
296 3pey_A ATP-dependent RNA helic 93.9 0.35 1.2E-05 47.8 11.0 21 248-268 45-65 (395)
297 1odf_A YGR205W, hypothetical 3 93.8 0.061 2.1E-06 54.1 5.5 27 247-273 31-57 (290)
298 1znw_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 52.1 3.3 24 249-272 22-45 (207)
299 2jeo_A Uridine-cytidine kinase 93.8 0.035 1.2E-06 53.4 3.5 26 249-274 27-52 (245)
300 1vec_A ATP-dependent RNA helic 93.8 0.66 2.3E-05 42.2 12.0 19 248-266 41-59 (206)
301 3ney_A 55 kDa erythrocyte memb 93.8 0.033 1.1E-06 53.6 3.2 25 248-272 20-44 (197)
302 1c9k_A COBU, adenosylcobinamid 93.7 0.034 1.2E-06 53.0 3.1 32 250-282 2-33 (180)
303 3ber_A Probable ATP-dependent 93.6 0.19 6.4E-06 48.5 8.3 18 248-265 81-98 (249)
304 1z6g_A Guanylate kinase; struc 93.6 0.037 1.3E-06 52.6 3.3 23 249-271 25-47 (218)
305 3ly5_A ATP-dependent RNA helic 93.5 0.14 4.8E-06 49.7 7.3 19 248-266 92-110 (262)
306 1rj9_A FTSY, signal recognitio 93.5 0.11 3.8E-06 52.7 6.7 24 248-271 103-126 (304)
307 1m8p_A Sulfate adenylyltransfe 93.4 0.046 1.6E-06 60.3 4.1 34 248-281 397-434 (573)
308 4b3f_X DNA-binding protein smu 93.4 0.11 3.7E-06 57.4 7.1 37 225-268 190-226 (646)
309 2ocp_A DGK, deoxyguanosine kin 93.4 0.053 1.8E-06 51.8 4.0 28 248-275 3-31 (241)
310 2a5y_B CED-4; apoptosis; HET: 93.4 0.15 5.1E-06 55.0 7.9 44 224-269 131-174 (549)
311 2ius_A DNA translocase FTSK; n 93.4 0.15 5.3E-06 55.7 8.1 34 248-281 168-208 (512)
312 2ged_A SR-beta, signal recogni 93.3 0.081 2.8E-06 47.5 4.9 23 248-270 49-71 (193)
313 3j16_B RLI1P; ribosome recycli 93.3 0.12 4.2E-06 57.3 7.3 23 249-271 105-127 (608)
314 2orw_A Thymidine kinase; TMTK, 93.3 0.077 2.6E-06 49.6 4.9 32 249-280 5-39 (184)
315 3b5x_A Lipid A export ATP-bind 93.2 0.065 2.2E-06 58.5 4.9 24 249-272 371-394 (582)
316 1htw_A HI0065; nucleotide-bind 93.2 0.051 1.7E-06 50.0 3.4 23 249-271 35-57 (158)
317 1p5z_B DCK, deoxycytidine kina 93.2 0.021 7.2E-07 55.4 0.8 28 248-275 25-53 (263)
318 2fwr_A DNA repair protein RAD2 93.1 0.49 1.7E-05 49.1 11.1 34 248-281 109-142 (472)
319 1xti_A Probable ATP-dependent 93.1 1 3.5E-05 44.7 12.9 23 248-270 46-68 (391)
320 3lnc_A Guanylate kinase, GMP k 93.1 0.031 1.1E-06 53.0 1.8 24 249-272 29-53 (231)
321 1bif_A 6-phosphofructo-2-kinas 93.1 0.025 8.7E-07 60.1 1.3 26 248-273 40-65 (469)
322 3kta_A Chromosome segregation 93.1 0.056 1.9E-06 48.8 3.4 25 249-273 28-52 (182)
323 2i3b_A HCR-ntpase, human cance 93.0 0.053 1.8E-06 51.2 3.4 23 249-271 3-25 (189)
324 1s96_A Guanylate kinase, GMP k 93.0 0.052 1.8E-06 52.4 3.3 24 249-272 18-41 (219)
325 2eyu_A Twitching motility prot 93.0 0.055 1.9E-06 53.5 3.5 23 249-271 27-49 (261)
326 2dyk_A GTP-binding protein; GT 92.9 0.063 2.1E-06 46.3 3.3 23 248-270 2-24 (161)
327 2f9l_A RAB11B, member RAS onco 92.9 0.057 1.9E-06 49.4 3.2 22 249-270 7-28 (199)
328 1zu4_A FTSY; GTPase, signal re 92.8 0.45 1.6E-05 48.5 10.1 34 248-281 106-142 (320)
329 1sq5_A Pantothenate kinase; P- 92.8 0.054 1.9E-06 54.4 3.2 25 248-272 81-105 (308)
330 3b9q_A Chloroplast SRP recepto 92.8 0.17 5.9E-06 51.1 6.9 24 248-271 101-124 (302)
331 3b60_A Lipid A export ATP-bind 92.7 0.15 5.2E-06 55.6 6.9 35 249-283 371-407 (582)
332 3thx_B DNA mismatch repair pro 92.7 0.4 1.4E-05 55.9 10.7 20 250-269 676-695 (918)
333 1oix_A RAS-related protein RAB 92.7 0.06 2E-06 49.2 3.1 22 249-270 31-52 (191)
334 1p9r_A General secretion pathw 92.7 0.16 5.3E-06 54.0 6.7 49 218-272 144-192 (418)
335 1z2a_A RAS-related protein RAB 92.6 0.067 2.3E-06 46.3 3.2 22 249-270 7-28 (168)
336 2ce2_X GTPase HRAS; signaling 92.6 0.066 2.3E-06 45.8 3.1 22 249-270 5-26 (166)
337 3qf4_A ABC transporter, ATP-bi 92.5 0.78 2.7E-05 50.3 12.2 34 250-283 372-407 (587)
338 1kao_A RAP2A; GTP-binding prot 92.5 0.073 2.5E-06 45.8 3.2 22 249-270 5-26 (167)
339 3e1s_A Exodeoxyribonuclease V, 92.4 0.11 3.7E-06 57.2 5.3 31 248-278 205-238 (574)
340 2nzj_A GTP-binding protein REM 92.4 0.068 2.3E-06 46.7 3.0 21 249-269 6-26 (175)
341 2wsm_A Hydrogenase expression/ 92.4 0.091 3.1E-06 48.6 3.9 46 222-272 10-55 (221)
342 1u8z_A RAS-related protein RAL 92.4 0.076 2.6E-06 45.7 3.2 22 249-270 6-27 (168)
343 1nrj_B SR-beta, signal recogni 92.3 0.072 2.5E-06 49.0 3.2 24 248-271 13-36 (218)
344 1g8f_A Sulfate adenylyltransfe 92.3 0.11 3.7E-06 56.8 5.0 26 248-273 396-421 (511)
345 1ek0_A Protein (GTP-binding pr 92.3 0.078 2.7E-06 45.8 3.2 22 249-270 5-26 (170)
346 2zej_A Dardarin, leucine-rich 92.3 0.059 2E-06 48.6 2.5 21 249-269 4-24 (184)
347 3tbk_A RIG-I helicase domain; 92.2 1.6 5.4E-05 45.3 13.4 34 248-281 20-61 (555)
348 3thx_A DNA mismatch repair pro 92.2 0.62 2.1E-05 54.4 11.4 20 250-269 665-684 (934)
349 2wji_A Ferrous iron transport 92.2 0.076 2.6E-06 47.1 3.0 21 249-269 5-25 (165)
350 3aez_A Pantothenate kinase; tr 92.2 0.075 2.6E-06 54.0 3.4 24 249-272 92-115 (312)
351 1z0j_A RAB-22, RAS-related pro 92.1 0.083 2.8E-06 45.8 3.2 22 249-270 8-29 (170)
352 3bk7_A ABC transporter ATP-bin 92.1 0.7 2.4E-05 51.2 11.2 22 250-271 385-406 (607)
353 2oca_A DAR protein, ATP-depend 92.1 1.1 3.8E-05 46.9 12.2 34 248-281 129-166 (510)
354 2va8_A SSO2462, SKI2-type heli 92.1 2 6.8E-05 47.4 14.8 34 248-281 47-84 (715)
355 4f4c_A Multidrug resistance pr 92.0 0.31 1.1E-05 58.6 8.8 34 250-283 447-482 (1321)
356 2gk6_A Regulator of nonsense t 92.0 0.14 4.9E-06 56.4 5.6 38 226-271 182-219 (624)
357 1g16_A RAS-related protein SEC 92.0 0.086 2.9E-06 45.7 3.1 22 249-270 5-26 (170)
358 1z08_A RAS-related protein RAB 92.0 0.088 3E-06 45.7 3.1 22 249-270 8-29 (170)
359 1r2q_A RAS-related protein RAB 92.0 0.09 3.1E-06 45.4 3.2 22 248-269 7-28 (170)
360 3i5x_A ATP-dependent RNA helic 92.0 0.46 1.6E-05 50.5 9.3 18 248-265 112-129 (563)
361 1yqt_A RNAse L inhibitor; ATP- 91.9 1 3.4E-05 49.1 12.0 147 250-482 315-471 (538)
362 2erx_A GTP-binding protein DI- 91.9 0.086 2.9E-06 45.7 3.0 21 249-269 5-25 (172)
363 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.09 3.1E-06 46.1 3.2 23 248-270 8-30 (177)
364 1ky3_A GTP-binding protein YPT 91.9 0.09 3.1E-06 46.1 3.2 23 248-270 9-31 (182)
365 3q85_A GTP-binding protein REM 91.9 0.086 2.9E-06 45.9 3.0 20 249-268 4-23 (169)
366 2j37_W Signal recognition part 91.9 0.24 8.4E-06 53.9 7.2 35 247-281 101-138 (504)
367 3q72_A GTP-binding protein RAD 91.9 0.079 2.7E-06 46.0 2.7 20 249-268 4-23 (166)
368 1r8s_A ADP-ribosylation factor 91.9 0.099 3.4E-06 45.3 3.4 22 249-270 2-23 (164)
369 2wjg_A FEOB, ferrous iron tran 91.9 0.086 2.9E-06 47.0 3.0 22 248-269 8-29 (188)
370 1c1y_A RAS-related protein RAP 91.9 0.094 3.2E-06 45.3 3.2 21 249-269 5-25 (167)
371 3bc1_A RAS-related protein RAB 91.9 0.093 3.2E-06 46.4 3.2 23 248-270 12-34 (195)
372 2v3c_C SRP54, signal recogniti 91.8 0.19 6.5E-06 53.5 6.1 36 247-282 99-137 (432)
373 3e70_C DPA, signal recognition 91.8 0.18 6.2E-06 51.8 5.7 24 248-271 130-153 (328)
374 3p32_A Probable GTPase RV1496/ 91.7 0.24 8.2E-06 50.6 6.5 33 248-280 80-115 (355)
375 1wrb_A DJVLGB; RNA helicase, D 91.7 1.1 3.9E-05 42.4 10.8 18 248-265 61-78 (253)
376 3tqc_A Pantothenate kinase; bi 91.7 0.097 3.3E-06 53.8 3.5 36 248-283 93-133 (321)
377 1z0f_A RAB14, member RAS oncog 91.6 0.1 3.5E-06 45.6 3.2 23 248-270 16-38 (179)
378 4i1u_A Dephospho-COA kinase; s 91.6 0.1 3.5E-06 50.7 3.5 30 249-279 11-40 (210)
379 2v9p_A Replication protein E1; 91.6 0.095 3.3E-06 53.5 3.4 27 248-274 127-153 (305)
380 3j16_B RLI1P; ribosome recycli 91.6 1.5 5E-05 48.8 13.0 22 250-271 381-402 (608)
381 3v9p_A DTMP kinase, thymidylat 91.6 0.13 4.4E-06 50.3 4.1 23 249-271 27-49 (227)
382 2ewv_A Twitching motility prot 91.6 0.094 3.2E-06 54.4 3.4 24 248-271 137-160 (372)
383 2og2_A Putative signal recogni 91.6 0.18 6.2E-06 52.5 5.5 24 248-271 158-181 (359)
384 2y8e_A RAB-protein 6, GH09086P 91.6 0.1 3.5E-06 45.6 3.1 23 248-270 15-37 (179)
385 2j0s_A ATP-dependent RNA helic 91.6 1.1 3.6E-05 45.2 11.0 22 248-269 75-96 (410)
386 3clv_A RAB5 protein, putative; 91.6 0.1 3.5E-06 46.2 3.2 22 249-270 9-30 (208)
387 2fn4_A P23, RAS-related protei 91.6 0.1 3.5E-06 45.7 3.1 23 248-270 10-32 (181)
388 2hxs_A RAB-26, RAS-related pro 91.5 0.1 3.4E-06 45.9 3.0 23 248-270 7-29 (178)
389 4edh_A DTMP kinase, thymidylat 91.5 0.11 3.6E-06 50.0 3.4 30 249-278 8-40 (213)
390 2r8r_A Sensor protein; KDPD, P 91.5 0.11 3.8E-06 51.3 3.6 33 249-281 8-43 (228)
391 1np6_A Molybdopterin-guanine d 91.5 0.11 3.7E-06 48.6 3.4 24 248-271 7-30 (174)
392 1upt_A ARL1, ADP-ribosylation 91.5 0.11 3.7E-06 45.2 3.2 22 248-269 8-29 (171)
393 2db3_A ATP-dependent RNA helic 91.5 3.4 0.00012 42.8 15.0 17 248-264 94-110 (434)
394 1xjc_A MOBB protein homolog; s 91.5 0.11 3.8E-06 48.8 3.4 24 248-271 5-28 (169)
395 1m7b_A RND3/RHOE small GTP-bin 91.4 0.1 3.6E-06 46.8 3.1 23 248-270 8-30 (184)
396 2a9k_A RAS-related protein RAL 91.4 0.11 3.8E-06 45.7 3.2 23 248-270 19-41 (187)
397 3tqf_A HPR(Ser) kinase; transf 91.4 0.14 4.9E-06 49.1 4.2 27 248-275 17-43 (181)
398 2pcj_A ABC transporter, lipopr 91.4 0.078 2.7E-06 51.0 2.4 23 250-272 33-55 (224)
399 3b85_A Phosphate starvation-in 91.4 0.083 2.8E-06 50.6 2.5 22 249-270 24-45 (208)
400 2onk_A Molybdate/tungstate ABC 91.4 0.095 3.3E-06 51.3 3.0 25 248-272 25-49 (240)
401 4dsu_A GTPase KRAS, isoform 2B 91.4 0.11 3.8E-06 45.9 3.2 22 249-270 6-27 (189)
402 3tw8_B RAS-related protein RAB 91.4 0.098 3.4E-06 45.8 2.8 22 248-269 10-31 (181)
403 3sqw_A ATP-dependent RNA helic 91.4 1.2 4.1E-05 48.0 11.8 18 248-265 61-78 (579)
404 3fht_A ATP-dependent RNA helic 91.3 1.3 4.3E-05 44.2 11.2 18 248-265 65-82 (412)
405 3con_A GTPase NRAS; structural 91.3 0.11 3.8E-06 46.4 3.2 22 249-270 23-44 (190)
406 3tif_A Uncharacterized ABC tra 91.3 0.084 2.9E-06 51.3 2.5 24 249-272 33-56 (235)
407 3tmk_A Thymidylate kinase; pho 91.3 0.17 5.7E-06 49.1 4.6 27 249-275 7-33 (216)
408 3t1o_A Gliding protein MGLA; G 91.3 0.11 3.9E-06 46.1 3.2 24 248-271 15-38 (198)
409 2bme_A RAB4A, RAS-related prot 91.3 0.11 3.8E-06 46.0 3.1 23 248-270 11-33 (186)
410 2lkc_A Translation initiation 91.2 0.11 3.8E-06 45.6 3.0 22 248-269 9-30 (178)
411 2oil_A CATX-8, RAS-related pro 91.2 0.12 4E-06 46.5 3.2 23 248-270 26-48 (193)
412 2efe_B Small GTP-binding prote 91.2 0.12 4.1E-06 45.5 3.1 23 248-270 13-35 (181)
413 2cbz_A Multidrug resistance-as 91.1 0.09 3.1E-06 51.1 2.5 23 249-271 33-55 (237)
414 1lw7_A Transcriptional regulat 91.1 0.11 3.9E-06 53.0 3.3 27 248-274 171-197 (365)
415 2cxx_A Probable GTP-binding pr 91.0 0.11 3.8E-06 46.1 2.8 21 249-269 3-23 (190)
416 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.13 4.3E-06 45.4 3.2 22 249-270 7-28 (186)
417 2p6r_A Afuhel308 helicase; pro 91.0 0.66 2.3E-05 51.3 9.5 34 248-281 41-77 (702)
418 3kkq_A RAS-related protein M-R 90.9 0.13 4.5E-06 45.6 3.2 22 249-270 20-41 (183)
419 2hf9_A Probable hydrogenase ni 90.9 0.13 4.6E-06 47.6 3.3 25 248-272 39-63 (226)
420 2g6b_A RAS-related protein RAB 90.8 0.14 4.6E-06 45.1 3.2 23 248-270 11-33 (180)
421 3cr8_A Sulfate adenylyltranfer 90.8 0.078 2.7E-06 58.3 1.9 35 249-283 371-409 (552)
422 1b0u_A Histidine permease; ABC 90.8 0.099 3.4E-06 51.6 2.5 23 250-272 35-57 (262)
423 3bwd_D RAC-like GTP-binding pr 90.8 0.14 4.7E-06 45.1 3.2 23 248-270 9-31 (182)
424 1svi_A GTP-binding protein YSX 90.7 0.12 4.2E-06 46.2 2.8 22 248-269 24-45 (195)
425 2d2e_A SUFC protein; ABC-ATPas 90.7 0.12 4.2E-06 50.5 3.0 21 250-270 32-52 (250)
426 2gj8_A MNME, tRNA modification 90.7 0.13 4.4E-06 46.2 2.9 22 249-270 6-27 (172)
427 1g6h_A High-affinity branched- 90.7 0.1 3.6E-06 51.2 2.5 24 249-272 35-58 (257)
428 4a2p_A RIG-I, retinoic acid in 90.7 1.6 5.5E-05 45.5 11.6 34 248-281 23-64 (556)
429 3tkl_A RAS-related protein RAB 90.7 0.14 4.9E-06 45.7 3.2 23 248-270 17-39 (196)
430 2iwr_A Centaurin gamma 1; ANK 90.7 0.1 3.5E-06 46.0 2.2 22 249-270 9-30 (178)
431 2zu0_C Probable ATP-dependent 90.6 0.13 4.3E-06 51.1 3.0 22 249-270 48-69 (267)
432 1x3s_A RAS-related protein RAB 90.6 0.15 5E-06 45.5 3.2 23 248-270 16-38 (195)
433 2gf9_A RAS-related protein RAB 90.5 0.15 5E-06 45.9 3.2 23 248-270 23-45 (189)
434 3pqc_A Probable GTP-binding pr 90.5 0.13 4.5E-06 45.7 2.8 23 248-270 24-46 (195)
435 2ck3_D ATP synthase subunit be 90.5 0.88 3E-05 49.6 9.7 23 249-271 155-177 (482)
436 1ji0_A ABC transporter; ATP bi 90.5 0.11 3.7E-06 50.5 2.5 23 250-272 35-57 (240)
437 1yrb_A ATP(GTP)binding protein 90.5 0.34 1.2E-05 46.0 5.9 34 248-281 15-50 (262)
438 3c5c_A RAS-like protein 12; GD 90.5 0.15 5E-06 46.3 3.2 22 249-270 23-44 (187)
439 3dz8_A RAS-related protein RAB 90.5 0.15 5.2E-06 46.0 3.3 23 249-271 25-47 (191)
440 3fho_A ATP-dependent RNA helic 90.5 0.46 1.6E-05 50.6 7.5 23 248-270 159-182 (508)
441 2bov_A RAla, RAS-related prote 90.5 0.15 5.1E-06 46.0 3.2 23 248-270 15-37 (206)
442 1mv5_A LMRA, multidrug resista 90.5 0.11 3.8E-06 50.5 2.5 23 249-271 30-52 (243)
443 1m2o_B GTP-binding protein SAR 90.5 0.14 4.9E-06 46.5 3.1 22 249-270 25-46 (190)
444 2c61_A A-type ATP synthase non 90.5 0.52 1.8E-05 51.2 7.9 25 249-273 154-178 (469)
445 2atv_A RERG, RAS-like estrogen 90.4 0.15 5.1E-06 46.2 3.2 23 248-270 29-51 (196)
446 2oap_1 GSPE-2, type II secreti 90.4 0.2 6.9E-06 54.4 4.7 25 248-272 261-285 (511)
447 3t5g_A GTP-binding protein RHE 90.4 0.15 5.1E-06 45.1 3.1 22 248-269 7-28 (181)
448 1sgw_A Putative ABC transporte 90.4 0.11 3.9E-06 50.0 2.5 23 250-272 38-60 (214)
449 1vg8_A RAS-related protein RAB 90.3 0.16 5.3E-06 46.0 3.2 23 248-270 9-31 (207)
450 3lv8_A DTMP kinase, thymidylat 90.3 0.15 5.2E-06 50.0 3.3 24 249-272 29-52 (236)
451 2o8b_B DNA mismatch repair pro 90.3 1.1 3.7E-05 52.9 10.9 20 249-268 791-810 (1022)
452 2ff7_A Alpha-hemolysin translo 90.3 0.12 4E-06 50.7 2.5 24 249-272 37-60 (247)
453 2pze_A Cystic fibrosis transme 90.2 0.12 4.1E-06 49.9 2.5 24 249-272 36-59 (229)
454 3ihw_A Centg3; RAS, centaurin, 90.2 0.16 5.4E-06 46.1 3.1 22 249-270 22-43 (184)
455 1zbd_A Rabphilin-3A; G protein 90.2 0.15 5.3E-06 46.1 3.0 22 248-269 9-30 (203)
456 3reg_A RHO-like small GTPase; 90.2 0.17 5.6E-06 45.7 3.2 23 248-270 24-46 (194)
457 3gfo_A Cobalt import ATP-bindi 90.1 0.12 4.1E-06 51.7 2.5 23 250-272 37-59 (275)
458 2wjy_A Regulator of nonsense t 90.1 0.27 9.2E-06 56.3 5.6 38 226-271 358-395 (800)
459 2a5j_A RAS-related protein RAB 90.1 0.17 5.7E-06 45.7 3.2 22 249-270 23-44 (191)
460 2ghi_A Transport protein; mult 90.1 0.12 4.3E-06 50.9 2.5 23 249-271 48-70 (260)
461 2f1r_A Molybdopterin-guanine d 90.1 0.099 3.4E-06 48.7 1.7 25 248-272 3-27 (171)
462 2fg5_A RAB-22B, RAS-related pr 90.1 0.16 5.5E-06 45.9 3.1 23 248-270 24-46 (192)
463 1zd9_A ADP-ribosylation factor 90.1 0.17 5.8E-06 45.6 3.2 22 249-270 24-45 (188)
464 1z06_A RAS-related protein RAB 90.1 0.17 5.8E-06 45.4 3.2 22 248-269 21-42 (189)
465 2gza_A Type IV secretion syste 90.1 0.14 4.7E-06 52.9 2.8 25 248-272 176-200 (361)
466 3sop_A Neuronal-specific septi 90.0 0.17 5.8E-06 50.2 3.4 24 249-272 4-27 (270)
467 2bcg_Y Protein YP2, GTP-bindin 90.0 0.16 5.6E-06 46.2 3.1 23 248-270 9-31 (206)
468 2gf0_A GTP-binding protein DI- 90.0 0.17 5.7E-06 45.4 3.1 22 248-269 9-30 (199)
469 2ixe_A Antigen peptide transpo 90.0 0.13 4.3E-06 51.2 2.5 24 249-272 47-70 (271)
470 1pui_A ENGB, probable GTP-bind 90.0 0.086 2.9E-06 48.1 1.2 21 249-269 28-48 (210)
471 1fzq_A ADP-ribosylation factor 90.0 0.15 5.1E-06 45.9 2.7 24 247-270 16-39 (181)
472 2p5s_A RAS and EF-hand domain 90.0 0.17 5.9E-06 46.0 3.2 23 248-270 29-51 (199)
473 1moz_A ARL1, ADP-ribosylation 89.9 0.12 4E-06 45.8 1.9 21 248-268 19-39 (183)
474 2qi9_C Vitamin B12 import ATP- 89.9 0.13 4.5E-06 50.6 2.5 24 249-272 28-51 (249)
475 3oes_A GTPase rhebl1; small GT 89.9 0.17 5.9E-06 46.1 3.1 23 248-270 25-47 (201)
476 3cph_A RAS-related protein SEC 89.9 0.18 6.1E-06 45.8 3.2 22 248-269 21-42 (213)
477 3oiy_A Reverse gyrase helicase 89.8 0.84 2.9E-05 46.4 8.5 23 248-270 37-59 (414)
478 2ihy_A ABC transporter, ATP-bi 89.8 0.13 4.5E-06 51.4 2.5 23 250-272 50-72 (279)
479 1ksh_A ARF-like protein 2; sma 89.8 0.17 5.6E-06 45.2 2.8 22 248-269 19-40 (186)
480 2yhs_A FTSY, cell division pro 89.7 0.4 1.4E-05 52.4 6.3 23 249-271 295-317 (503)
481 2yz2_A Putative ABC transporte 89.7 0.14 4.8E-06 50.6 2.5 22 250-271 36-57 (266)
482 2cjw_A GTP-binding protein GEM 89.7 0.2 6.7E-06 45.9 3.4 22 249-270 8-29 (192)
483 2zj8_A DNA helicase, putative 89.6 1.7 5.9E-05 48.1 11.4 34 248-281 40-77 (720)
484 1gwn_A RHO-related GTP-binding 89.6 0.18 6.2E-06 46.8 3.1 23 248-270 29-51 (205)
485 1oyw_A RECQ helicase, ATP-depe 89.6 0.93 3.2E-05 48.8 9.0 33 248-280 41-73 (523)
486 2fh5_B SR-beta, signal recogni 89.5 0.2 6.7E-06 46.0 3.2 23 248-270 8-30 (214)
487 1zj6_A ADP-ribosylation factor 89.5 0.18 6.3E-06 45.1 2.9 22 248-269 17-38 (187)
488 3ld9_A DTMP kinase, thymidylat 89.5 0.2 7E-06 48.8 3.4 26 248-273 22-47 (223)
489 2atx_A Small GTP binding prote 89.4 0.2 6.8E-06 45.1 3.1 23 248-270 19-41 (194)
490 1w36_D RECD, exodeoxyribonucle 89.4 0.18 6.2E-06 55.6 3.4 24 248-271 165-188 (608)
491 4tmk_A Protein (thymidylate ki 89.4 0.2 6.9E-06 48.2 3.3 24 249-272 5-28 (213)
492 1f6b_A SAR1; gtpases, N-termin 89.3 0.16 5.4E-06 46.7 2.4 21 249-269 27-47 (198)
493 2q3h_A RAS homolog gene family 89.3 0.2 6.8E-06 45.3 3.0 22 248-269 21-42 (201)
494 4f92_B U5 small nuclear ribonu 89.3 1.1 3.7E-05 55.6 10.3 19 248-266 96-114 (1724)
495 2fu5_C RAS-related protein RAB 89.3 0.12 4.1E-06 45.9 1.5 22 248-269 9-30 (183)
496 2pt7_A CAG-ALFA; ATPase, prote 89.2 0.14 4.6E-06 52.4 2.1 25 248-272 172-196 (330)
497 1j8m_F SRP54, signal recogniti 89.2 0.3 1E-05 49.3 4.6 36 247-282 98-136 (297)
498 4bas_A ADP-ribosylation factor 89.2 0.19 6.5E-06 45.0 2.8 22 248-269 18-39 (199)
499 1f2t_A RAD50 ABC-ATPase; DNA d 89.1 0.22 7.7E-06 44.8 3.2 22 250-271 26-47 (149)
500 2ew1_A RAS-related protein RAB 89.1 0.21 7.2E-06 46.4 3.1 23 248-270 27-49 (201)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.1e-48 Score=437.99 Aligned_cols=360 Identities=24% Similarity=0.336 Sum_probs=248.1
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
...+.+.|+||+|++++++.|++.+.+|+.+|+++ +|||||||||||||+|||+||++++++|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34678999999999999999999999999988765 6899999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhhhh------------------------------------hccccCcceee------------
Q psy16204 285 SKYRGESEKLVRLLFEMVSFL------------------------------------VGLHSNKTFYL------------ 316 (577)
Q Consensus 285 ~k~~G~~e~~vr~lF~~a~~~------------------------------------~~~~~~~~~~~------------ 316 (577)
++|.|++++.++.+|+.|... .+...+..|++
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 999999999999999854311 11111112211
Q ss_pred --------------------------------------------------------------------------------
Q psy16204 317 -------------------------------------------------------------------------------- 316 (577)
Q Consensus 317 -------------------------------------------------------------------------------- 316 (577)
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~ 435 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccc
Confidence
Q ss_pred ---------------------------------ccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 317 ---------------------------------VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 317 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
+..++..|.++.|....+.++.+.+.++-..+..+...+..+|.+++
T Consensus 436 ~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvL 515 (806)
T 3cf2_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVL 515 (806)
T ss_dssp CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCE
T ss_pred ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEE
Confidence 22233456666666777777778888888888888889999999999
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHE 438 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~ 438 (577)
.|+++||||+..+.+.+.+..+++....... .++|+.++.++.+|..|+.+.||||||||||.+++.|+.. +.+.
T Consensus 516 l~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~ 595 (806)
T 3cf2_A 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 595 (806)
T ss_dssp EESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------
T ss_pred EecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCch
Confidence 9999999999888877888888887777665 5699999999999999999999999999999999998643 3456
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccC
Q psy16204 439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLD 491 (577)
Q Consensus 439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vd 491 (577)
..++++++||.+||++... .+|+||||||+|+.|+++++|+++++. ++|
T Consensus 596 ~~~rv~~~lL~~mdg~~~~----~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d 671 (806)
T 3cf2_A 596 AADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD 671 (806)
T ss_dssp --CHHHHHHHHHHHSSCSS----SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--
T ss_pred HHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC
Confidence 7789999999999999864 679999999999999999999544432 458
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHH--------hhhhccCCCCCCCHHHHHHHHHHhCCCCCHHH
Q psy16204 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQI--------KEIKQEDIDLPVTEKDFREAIARCRKSVTAHD 563 (577)
Q Consensus 492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~--------~~~~~~~~~~~It~~df~~Al~~~~psv~~~~ 563 (577)
++.||+.|+||||+||.++|++|++.++|+.+........ ......+....|+++||++|++.++|||++++
T Consensus 672 l~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~ 751 (806)
T 3cf2_A 672 LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND 751 (806)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----------
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHH
Confidence 9999999999999999999999999999998753211110 01111223457999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q psy16204 564 LSKYDSWMNEFGS 576 (577)
Q Consensus 564 ~~~~~~~~~~~~~ 576 (577)
+.+|++|.++|+.
T Consensus 752 l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 752 IRKYEMFAQTLQQ 764 (806)
T ss_dssp ----CCCC-----
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998863
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-44 Score=377.24 Aligned_cols=231 Identities=34% Similarity=0.511 Sum_probs=199.9
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
....+.|+++|+||+|++++|+.|++++.+|+.+|+.| +|+|||||||||||+||++||.+++++|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 55667899999999999999999999999999998765 7899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++.++|+|++++++|.+|..
T Consensus 217 ~l~sk~vGese~~vr~lF~~------------------------------------------------------------ 236 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVM------------------------------------------------------------ 236 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHH------------------------------------------------------------
T ss_pred HhhccccchHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~ 439 (577)
|+.++||||||||||.+++.|+.+ +.+..
T Consensus 237 -------------------------------------------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~ 267 (405)
T 4b4t_J 237 -------------------------------------------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSE 267 (405)
T ss_dssp -------------------------------------------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGH
T ss_pred -------------------------------------------------HHHhCCceEeeecchhhccCCCCCCCCCcHH
Confidence 888999999999999999988543 33556
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl 492 (577)
.++++++||.+||++... .+|+||||||+|+.||++++|+++++. ++|+
T Consensus 268 ~~~~l~~lL~~lDg~~~~----~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl 343 (405)
T 4b4t_J 268 VQRTMLELLNQLDGFETS----KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL 343 (405)
T ss_dssp HHHHHHHHHHHHHTTTCC----CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH
T ss_pred HHHHHHHHHHhhhccCCC----CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH
Confidence 788999999999998854 679999999999999999999655442 4589
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 570 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~ 570 (577)
+.||+.|+||||+||.++|++|++.|+|+.. ..||.+||+.|+.++.+......++.++.|
T Consensus 344 ~~lA~~t~G~SGADi~~l~~eA~~~Air~~~-----------------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 344 RKVAEKMNGCSGADVKGVCTEAGMYALRERR-----------------IHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 9999999999999999999999999998742 469999999999998766555555555555
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-42 Score=367.66 Aligned_cols=226 Identities=29% Similarity=0.489 Sum_probs=200.9
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
....+.|+++|+||+|++++|+.|++.+.+|+.+|+.| +|||||||||||||+||++||.+++++|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 34567899999999999999999999999999988765 7899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++.++|+|+++++++.+|..
T Consensus 251 ~l~sk~vGesek~ir~lF~~------------------------------------------------------------ 270 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKV------------------------------------------------------------ 270 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred HhhhccCchHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~ 439 (577)
|+.++||||||||||.++..|..++ .+..
T Consensus 271 -------------------------------------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~ 301 (437)
T 4b4t_I 271 -------------------------------------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGERE 301 (437)
T ss_dssp -------------------------------------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCH
T ss_pred -------------------------------------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHH
Confidence 8889999999999999999985433 2446
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl 492 (577)
..++++.||..||++... .+|+||||||+|+.||++++|+++++ .++|+
T Consensus 302 ~~~~l~~LL~~lDg~~~~----~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl 377 (437)
T 4b4t_I 302 IQRTMLELLNQLDGFDDR----GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL 377 (437)
T ss_dssp HHHHHHHHHHHHHHCCCS----SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH
T ss_pred HHHHHHHHHHHhhCcCCC----CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH
Confidence 678899999999998754 67999999999999999999855443 35689
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLS 565 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~ 565 (577)
+.||+.|+||||+||.++|++|++.|+|+.. ..||.+||++|++++.|+.+.++++
T Consensus 378 ~~LA~~T~GfSGADI~~l~~eA~~~Air~~~-----------------~~It~eDf~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 378 ETLVTTKDDLSGADIQAMCTEAGLLALRERR-----------------MQVTAEDFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SCBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHhCCCChhhHH
Confidence 9999999999999999999999999998743 4699999999999998887766553
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=361.75 Aligned_cols=226 Identities=33% Similarity=0.468 Sum_probs=198.8
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
..+...|+++|+||+|++++|+.|.+.+.+|+.+|+.| +|||||||||||||+||++||.+++++|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 45567899999999999999999999999999998765 7999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++.++|+|+++++++.+|..
T Consensus 250 ~l~sk~~Gese~~ir~~F~~------------------------------------------------------------ 269 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAY------------------------------------------------------------ 269 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred hhccccchHHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~ 439 (577)
|+.+.||||||||||.++..|.+++ .+..
T Consensus 270 -------------------------------------------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~ 300 (437)
T 4b4t_L 270 -------------------------------------------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADRE 300 (437)
T ss_dssp -------------------------------------------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTH
T ss_pred -------------------------------------------------HHhcCCceeeeecccccccccccCCCCcchH
Confidence 8889999999999999999885433 3456
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl 492 (577)
..++++.||.+||++.+. .+|+||||||+|+.||++++|+++|+. ++|+
T Consensus 301 ~~~~l~~lL~~lDg~~~~----~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl 376 (437)
T 4b4t_L 301 IQRTLMELLTQMDGFDNL----GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF 376 (437)
T ss_dssp HHHHHHHHHHHHHSSSCT----TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH
T ss_pred HHHHHHHHHHHhhcccCC----CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH
Confidence 778999999999998854 679999999999999999998765432 4589
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLS 565 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~ 565 (577)
..||+.|+||||+||.++|++|++.|+|+.. ..|+.+||.+|+.++.|+...+...
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~air~~~-----------------~~i~~~d~~~Al~~v~~~~k~e~~~ 432 (437)
T 4b4t_L 377 EAAVKMSDGFNGADIRNCATEAGFFAIRDDR-----------------DHINPDDLMKAVRKVAEVKKLEGTI 432 (437)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHHHTCC-----
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHHhccCcccch
Confidence 9999999999999999999999999998743 3699999999999998876554433
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=362.30 Aligned_cols=232 Identities=33% Similarity=0.487 Sum_probs=196.1
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+.+.+.|+++|+||+|++++|+.|++.+.+|+.+|+.+ +|||||||||||||+||++||.+++++|+.++++
T Consensus 198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 34567899999999999999999999999999888754 7999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++.++|+|+++++++.+|..
T Consensus 278 ~L~sk~vGesek~ir~lF~~------------------------------------------------------------ 297 (467)
T 4b4t_H 278 ELVQKYVGEGARMVRELFEM------------------------------------------------------------ 297 (467)
T ss_dssp GGCCCSSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred HhhcccCCHHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~ 439 (577)
|+.++||||||||||.++..|+.+ +.+..
T Consensus 298 -------------------------------------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~ 328 (467)
T 4b4t_H 298 -------------------------------------------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNE 328 (467)
T ss_dssp -------------------------------------------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGH
T ss_pred -------------------------------------------------HHhcCCceEeecccccccccccCcCCCccHH
Confidence 888999999999999999988643 34556
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl 492 (577)
..++++.||.+||++... .+|+||||||+|+.|+++++|+.+|+ .++|+
T Consensus 329 ~~~~l~~lL~~lDg~~~~----~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl 404 (467)
T 4b4t_H 329 VQRTMLELITQLDGFDPR----GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW 404 (467)
T ss_dssp HHHHHHHHHHHHHSSCCT----TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH
T ss_pred HHHHHHHHHHHhhccCCC----CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH
Confidence 778999999999998754 67999999999999999999854443 24589
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCC-HHHHHHHHHHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVT-AHDLSKYDSWM 571 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~-~~~~~~~~~~~ 571 (577)
+.||+.|+||||+||.+||++|++.|+|+.. ..||.+||.+|++++.+... .....+|.+|.
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~-----------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC-----------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 9999999999999999999999999998853 46999999999999854332 23456777774
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=360.07 Aligned_cols=222 Identities=31% Similarity=0.476 Sum_probs=198.3
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
......|+++|+||+|++++|+.|.+.+.+|+.+|+.| +|||||||||||||++|++||.+++++|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34457899999999999999999999999999988764 7899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++.++|+|+++++++.+|..
T Consensus 250 ~l~~~~vGese~~ir~lF~~------------------------------------------------------------ 269 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFAL------------------------------------------------------------ 269 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred hhhhcccchHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh--hHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE--HEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~--~~~ 439 (577)
|+.++||||||||||.++..|..+.. +..
T Consensus 270 -------------------------------------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~ 300 (434)
T 4b4t_M 270 -------------------------------------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDRE 300 (434)
T ss_dssp -------------------------------------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHH
T ss_pred -------------------------------------------------HHhcCCeEEeecchhhhhhccCCCCCCCchH
Confidence 88899999999999999999865332 345
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl 492 (577)
..++++.||..||++.+. .+|+||||||+|+.||++++|+++++ .++|+
T Consensus 301 ~~~~~~~lL~~ldg~~~~----~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl 376 (434)
T 4b4t_M 301 VQRTMLELLNQLDGFSSD----DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW 376 (434)
T ss_dssp HHHHHHHHHHHHTTSCSS----CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH
T ss_pred HHHHHHHHHHHhhccCCC----CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH
Confidence 667899999999998864 67999999999999999998855443 35689
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA 561 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~ 561 (577)
+.||+.|+||||+||.++|++|++.|+|+.. ..|+.+||.+|+++++|+.+.
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~-----------------~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 377 QELARSTDEFNGAQLKAVTVEAGMIALRNGQ-----------------SSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC-----------------SSBCHHHHHHHHHSCSSSCCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998853 479999999999999998763
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-41 Score=357.76 Aligned_cols=225 Identities=32% Similarity=0.469 Sum_probs=198.2
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
......|+++|+||+|++++|+.|.+.+.+|+.+|+.+ +|+|||||||||||++|++||.+++++|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 34457889999999999999999999999999888654 7899999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS 361 (577)
Q Consensus 282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (577)
++.++|+|+++.+|+.+|..
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~------------------------------------------------------------ 260 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRL------------------------------------------------------------ 260 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred hhhccccchhHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204 362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA 439 (577)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~ 439 (577)
|+.++||||||||+|.++..|+.. +.+..
T Consensus 261 -------------------------------------------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~ 291 (428)
T 4b4t_K 261 -------------------------------------------------ARENAPSIIFIDEVDSIATKRFDAQTGSDRE 291 (428)
T ss_dssp -------------------------------------------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCH
T ss_pred -------------------------------------------------HHHcCCCeeechhhhhhhccccCCCCCCChH
Confidence 888999999999999999988443 33456
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc----------------------------ccC
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV----------------------------NLD 491 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~----------------------------~vd 491 (577)
..+++++||.+||++.+. .+|+||||||+|+.||++++|+++++. ++|
T Consensus 292 ~~r~l~~lL~~ldg~~~~----~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d 367 (428)
T 4b4t_K 292 VQRILIELLTQMDGFDQS----TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD 367 (428)
T ss_dssp HHHHHHHHHHHHHHSCSS----CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC
T ss_pred HHHHHHHHHHHhhCCCCC----CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC
Confidence 778999999999998854 679999999999999999999654432 348
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH-hCCCCCHHHH
Q psy16204 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR-CRKSVTAHDL 564 (577)
Q Consensus 492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~-~~psv~~~~~ 564 (577)
++.||..|+||||+||.++|++|++.|+|+.. ..|+.+||++|+.+ ++++.+.+++
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~-----------------~~i~~~d~~~A~~~~~~~~~~~~~~ 424 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEEAYATQVKTDNTVDKF 424 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----------------CCCCHHHHHHHHHHhhCccCCccHh
Confidence 99999999999999999999999999998843 46999999999987 5676665443
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=328.02 Aligned_cols=252 Identities=40% Similarity=0.656 Sum_probs=212.8
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHh-CCeEEEEecCcc
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATEC-GTTFFNVSSSTL 283 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v~~s~l 283 (577)
+...++++|++|+|++++|+.|++.+.+|+.+++.+ +++|||||||||||+||+++|+++ +.+|+.++++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 346788999999999999999999999988877653 689999999999999999999999 899999999999
Q ss_pred ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
.++|.|+.+..++.+|..
T Consensus 83 ~~~~~g~~~~~~~~lf~~-------------------------------------------------------------- 100 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQL-------------------------------------------------------------- 100 (322)
T ss_dssp CCSSCCSCHHHHHHHHHH--------------------------------------------------------------
T ss_pred HhhhhhHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999999999999999976
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRF 443 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v 443 (577)
++...|+||||||||.++..+... .....+++
T Consensus 101 -----------------------------------------------a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~ 132 (322)
T 1xwi_A 101 -----------------------------------------------ARENKPSIIFIDEIDSLCGSRSEN-ESEAARRI 132 (322)
T ss_dssp -----------------------------------------------HHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHH
T ss_pred -----------------------------------------------HHhcCCcEEEeecHHHhccccccc-cchHHHHH
Confidence 677789999999999999987654 35667889
Q ss_pred HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCHHHHHH
Q psy16204 444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDFHKISK 497 (577)
Q Consensus 444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl~~LA~ 497 (577)
++.||..|+++.. ...+|+||+|||.|+.|++++++|+... .+.++..||+
T Consensus 133 ~~~ll~~ld~~~~---~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 209 (322)
T 1xwi_A 133 KTEFLVQMQGVGV---DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR 209 (322)
T ss_dssp HHHHHHHHHCSSS---CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccc---cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999764 2367999999999999999999887321 1236789999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhcCChh-------------------------------HHhhhhccC-CCCCCCH
Q psy16204 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPA-------------------------------QIKEIKQED-IDLPVTE 545 (577)
Q Consensus 498 ~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~-------------------------------~~~~~~~~~-~~~~It~ 545 (577)
.++||+|+||.+||++|++.++|+........ .+..+..+. ...+|++
T Consensus 210 ~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (322)
T 1xwi_A 210 KTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 289 (322)
T ss_dssp TCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCH
Confidence 99999999999999999999999976321000 000111111 2358999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204 546 KDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576 (577)
Q Consensus 546 ~df~~Al~~~~psv~~~~~~~~~~~~~~~~~ 576 (577)
+||.+|++.++||++++++.+|++|.++||+
T Consensus 290 ~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 290 SDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp HHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999996
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=9e-39 Score=322.81 Aligned_cols=254 Identities=44% Similarity=0.652 Sum_probs=210.6
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.++..++++.|++|+|++++++.|.+++.+|+.+++. .+++|||||||||||++|++||++++.+|+.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 4567889999999999999999999999888777654 368999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204 283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI 362 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (577)
+.++|.|+.+..++.+|..
T Consensus 87 l~~~~~g~~~~~~~~~f~~------------------------------------------------------------- 105 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAM------------------------------------------------------------- 105 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHH-------------------------------------------------------------
T ss_pred HhhcccchHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999976
Q ss_pred ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204 363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR 442 (577)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~ 442 (577)
++...|+||||||||.++..++.+ .+...++
T Consensus 106 ------------------------------------------------a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~ 136 (322)
T 3eie_A 106 ------------------------------------------------ARENKPSIIFIDQVDALTGTRGEG-ESEASRR 136 (322)
T ss_dssp ------------------------------------------------HHHTSSEEEEEECGGGGSCC-------CCTHH
T ss_pred ------------------------------------------------HHhcCCeEEEechhhhhhccCCCC-cchHHHH
Confidence 777889999999999999877543 3456778
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCHHHHH
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDFHKIS 496 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl~~LA 496 (577)
+++.||..|++... ...+|+||+|||.|+.|++++++||... .+.++..||
T Consensus 137 ~~~~ll~~l~~~~~---~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la 213 (322)
T 3eie_A 137 IKTELLVQMNGVGN---DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLG 213 (322)
T ss_dssp HHHHHHHHHGGGGT---SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHhccccc---cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 99999999998753 2367999999999999999998876321 123678999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhH-------------------------Hhhhhcc-CCCCCCCHHHHHH
Q psy16204 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ-------------------------IKEIKQE-DIDLPVTEKDFRE 550 (577)
Q Consensus 497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~-------------------------~~~~~~~-~~~~~It~~df~~ 550 (577)
..++||+|+||.++|++|++.++|+......... +..+..+ ....+||.+||.+
T Consensus 214 ~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~ 293 (322)
T 3eie_A 214 AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLK 293 (322)
T ss_dssp HTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHH
Confidence 9999999999999999999999999864321110 0111111 1236799999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204 551 AIARCRKSVTAHDLSKYDSWMNEFGS 576 (577)
Q Consensus 551 Al~~~~psv~~~~~~~~~~~~~~~~~ 576 (577)
|++.++||++.+++.+|++|.++||+
T Consensus 294 al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 294 AIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp HHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999996
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.2e-37 Score=320.53 Aligned_cols=254 Identities=45% Similarity=0.664 Sum_probs=199.8
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.+....+++.|++|+|++.+++.|.+++.+|+..++.+ +++|||||||||||+||++||++++.+|+.+++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 44556788999999999999999999998887776543 57999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204 283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI 362 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (577)
+..+|.|+.+..++.+|..
T Consensus 120 l~~~~~g~~~~~~~~~f~~------------------------------------------------------------- 138 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAM------------------------------------------------------------- 138 (355)
T ss_dssp HHSCC---CHHHHHHHHHH-------------------------------------------------------------
T ss_pred HhhhhcchHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999988876
Q ss_pred ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204 363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR 442 (577)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~ 442 (577)
++...|+||||||||.++..++.+ .+...++
T Consensus 139 ------------------------------------------------a~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~ 169 (355)
T 2qp9_X 139 ------------------------------------------------ARENKPSIIFIDQVDALTGTRGEG-ESEASRR 169 (355)
T ss_dssp ------------------------------------------------HHHTSSEEEEEECGGGGTC-------CTHHHH
T ss_pred ------------------------------------------------HHHcCCeEEEEechHhhcccCCCC-cchHHHH
Confidence 677789999999999999877543 4566788
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCHHHHH
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDFHKIS 496 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl~~LA 496 (577)
+++.||..|+++.. ...+|+||+|||.|+.|++++++||... .+.++..||
T Consensus 170 ~~~~ll~~l~~~~~---~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la 246 (355)
T 2qp9_X 170 IKTELLVQMNGVGN---DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG 246 (355)
T ss_dssp HHHHHHHHHHHCC------CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH
T ss_pred HHHHHHHHhhcccc---cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 99999999998764 2356999999999999999999877321 123678999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCh------------------h-------HHhhhhcc-CCCCCCCHHHHHH
Q psy16204 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTP------------------A-------QIKEIKQE-DIDLPVTEKDFRE 550 (577)
Q Consensus 497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~------------------~-------~~~~~~~~-~~~~~It~~df~~ 550 (577)
..++||+|+||.++|++|++.++++....... . .+..+... ....+|+.+||.+
T Consensus 247 ~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~ 326 (355)
T 2qp9_X 247 AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLK 326 (355)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHH
Confidence 99999999999999999999999997532100 0 00011111 1235799999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204 551 AIARCRKSVTAHDLSKYDSWMNEFGS 576 (577)
Q Consensus 551 Al~~~~psv~~~~~~~~~~~~~~~~~ 576 (577)
||+.++||++.+++.+|++|.++||+
T Consensus 327 Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 327 AIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp HHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999996
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.7e-37 Score=325.54 Aligned_cols=257 Identities=40% Similarity=0.649 Sum_probs=202.7
Q ss_pred HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHh-CCeEEEE
Q psy16204 207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATEC-GTTFFNV 278 (577)
Q Consensus 207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v 278 (577)
+...+....+++.|++|+|++.+++.|.+++.+|+.++.. ++++||+||||||||+||++||.++ +.+|+.+
T Consensus 120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 3445666788999999999999999999999887766654 3689999999999999999999999 8999999
Q ss_pred ecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCC
Q psy16204 279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQES 358 (577)
Q Consensus 279 ~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 358 (577)
+++++.++|.|+.+..++.+|..
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~--------------------------------------------------------- 222 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQL--------------------------------------------------------- 222 (444)
T ss_dssp CCC---------CCCTHHHHHHH---------------------------------------------------------
T ss_pred eHHHHHhhhcchHHHHHHHHHHH---------------------------------------------------------
Confidence 99999999988888888888865
Q ss_pred CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhH
Q psy16204 359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHE 438 (577)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~ 438 (577)
++...|+||||||||.+++.++.. ...
T Consensus 223 ----------------------------------------------------a~~~~~~vl~iDEid~l~~~~~~~-~~~ 249 (444)
T 2zan_A 223 ----------------------------------------------------ARENKPSIIFIDEIDSLCGSRSEN-ESE 249 (444)
T ss_dssp ----------------------------------------------------HHHSCSEEEEESCTTTTCCCSSCC-CCG
T ss_pred ----------------------------------------------------HHHcCCeEEEEechHhhccCCCCc-ccc
Confidence 677789999999999999877554 456
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCH
Q psy16204 439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDF 492 (577)
Q Consensus 439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl 492 (577)
..+++++.||..|+++.. ...+|+||+|||.|+.|++++++||... .+.++
T Consensus 250 ~~~~~~~~lL~~l~~~~~---~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l 326 (444)
T 2zan_A 250 AARRIKTEFLVQMQGVGV---DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADF 326 (444)
T ss_dssp GGHHHHHHHHTTTTCSSC---CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHH
T ss_pred HHHHHHHHHHHHHhCccc---CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 678899999999998753 2367999999999999999999987321 12367
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCC------------------------hhHH-------hhhhcc-CCC
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT------------------------PAQI-------KEIKQE-DID 540 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~------------------------~~~~-------~~~~~~-~~~ 540 (577)
..||..++||+|+||..+|++|++.++|+...... +... ..+... ...
T Consensus 327 ~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (444)
T 2zan_A 327 QELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLE 406 (444)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccC
Confidence 89999999999999999999999999999764210 0000 001111 123
Q ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204 541 LPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576 (577)
Q Consensus 541 ~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~~ 576 (577)
.+||++||.+||+.++|||+.+++.+|++|.++||+
T Consensus 407 ~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 407 PVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp CCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999996
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.3e-36 Score=301.91 Aligned_cols=250 Identities=31% Similarity=0.546 Sum_probs=201.8
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
....+.+.|++|+|++++++.|.+++.+|+.+++. .+++||+||||||||++|++||.+++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 45678899999999999999999999988776653 3679999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
.++|.|+.+..++.+|..
T Consensus 86 ~~~~~g~~~~~~~~~f~~-------------------------------------------------------------- 103 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDK-------------------------------------------------------------- 103 (301)
T ss_dssp HHHHHTTCTTHHHHHHHH--------------------------------------------------------------
T ss_pred HhhhcCchHHHHHHHHHH--------------------------------------------------------------
Confidence 888888888888877765
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEASR 441 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~~~ 441 (577)
+....|+||||||||.++..++... ......
T Consensus 104 -----------------------------------------------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 136 (301)
T 3cf0_A 104 -----------------------------------------------ARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 136 (301)
T ss_dssp -----------------------------------------------HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCC
T ss_pred -----------------------------------------------HHhcCCeEEEEEChHHHhhccCCCcCCcchHHH
Confidence 6777899999999999998764321 123345
Q ss_pred HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Ccc-------------------------cccccCHHH
Q psy16204 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVV-------------------------IDVNLDFHK 494 (577)
Q Consensus 442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~-------------------------i~~~vdl~~ 494 (577)
++++.||..|+++.. ..+|+||+|||+++.|++++++ +|. +..+++++.
T Consensus 137 ~~~~~lL~~l~~~~~----~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~ 212 (301)
T 3cf0_A 137 RVINQILTEMDGMST----KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF 212 (301)
T ss_dssp HHHHHHHHHHHSSCT----TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred HHHHHHHHHhhcccC----CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHH
Confidence 788999999998764 3679999999999998888887 431 122457899
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChh-HHh-------hhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHH
Q psy16204 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA-QIK-------EIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSK 566 (577)
Q Consensus 495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~-~~~-------~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~ 566 (577)
+|..++||+|+||.++|++|++.++++.+...... ... .......-..|+.+||.+||+.++||++.+++.+
T Consensus 213 la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~ 292 (301)
T 3cf0_A 213 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRK 292 (301)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999998875321100 000 0000111257999999999999999999999999
Q ss_pred HHHHHHhh
Q psy16204 567 YDSWMNEF 574 (577)
Q Consensus 567 ~~~~~~~~ 574 (577)
|++|.++|
T Consensus 293 ~~~~~~~~ 300 (301)
T 3cf0_A 293 YEMFAQTL 300 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999998
No 13
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=300.30 Aligned_cols=263 Identities=39% Similarity=0.679 Sum_probs=213.3
Q ss_pred cCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHH
Q psy16204 197 TGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.++++.+++.....+....+++.|++|+|++.+++.|.+.+.+|+..+.. .+++||+||||||||++|++||+
T Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 60 KNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp TTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45677777777888888899999999999999999999999887665553 46899999999999999999999
Q ss_pred HhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCC
Q psy16204 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTA 349 (577)
Q Consensus 270 el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 349 (577)
+++.+|+.++++++..+|.|+.+..++.+|..
T Consensus 140 ~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~------------------------------------------------ 171 (357)
T 3d8b_A 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAV------------------------------------------------ 171 (357)
T ss_dssp HTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHH------------------------------------------------
T ss_pred HcCCeEEEEehHHhhccccchHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999998888888865
Q ss_pred cccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEcccccccc
Q psy16204 350 PTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCS 429 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~ 429 (577)
+....|+||||||||.++.
T Consensus 172 -------------------------------------------------------------a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 172 -------------------------------------------------------------ARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp -------------------------------------------------------------HHHTCSEEEEEETHHHHTB
T ss_pred -------------------------------------------------------------HHhcCCeEEEEeCchhhhc
Confidence 6677899999999999998
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------
Q psy16204 430 MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV--------------------- 488 (577)
Q Consensus 430 ~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~--------------------- 488 (577)
.+.. +.+....++++.||..+++.... ...+|+||+|||.++.|++++++|+....
T Consensus 191 ~~~~-~~~~~~~~~~~~lL~~l~~~~~~--~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~ 267 (357)
T 3d8b_A 191 QRGD-GEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE 267 (357)
T ss_dssp C-------CHHHHHHHHHHHHHHC------CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS
T ss_pred cCCC-CcchHHHHHHHHHHHHHhccccc--CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc
Confidence 7643 33556778999999999987632 33679999999999999999998874211
Q ss_pred -----ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHH
Q psy16204 489 -----NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHD 563 (577)
Q Consensus 489 -----~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~ 563 (577)
+.++..|++.++||+++||..||++|++.++|+.... ....+ .......|+.+||.+|++.++|+++.++
T Consensus 268 ~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~----~~~~~-~~~~~~~i~~~d~~~al~~~~ps~~~~~ 342 (357)
T 3d8b_A 268 QCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA----DIATI-TPDQVRPIAYIDFENAFRTVRPSVSPKD 342 (357)
T ss_dssp CBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---------------CCCBCHHHHHHHHHHHGGGCCCCC
T ss_pred CCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh----hhccc-cccccCCcCHHHHHHHHHhcCCCCCHHH
Confidence 1146789999999999999999999999999874211 11111 1112357999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q psy16204 564 LSKYDSWMNEFGS 576 (577)
Q Consensus 564 ~~~~~~~~~~~~~ 576 (577)
+++|++|.+.||+
T Consensus 343 ~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 343 LELYENWNKTFGC 355 (357)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999997
No 14
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-34 Score=282.42 Aligned_cols=258 Identities=43% Similarity=0.711 Sum_probs=200.2
Q ss_pred hhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
+++.....+...++++.|++|+|++.+++.|.+.+..|+.+++. .+++||+||||||||++|+++|++++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 44455567777889999999999999999999999887665543 36899999999999999999999999999
Q ss_pred EEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccc
Q psy16204 276 FNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAEN 355 (577)
Q Consensus 276 v~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 355 (577)
+.++++++...+.|..+..++.+|..
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~------------------------------------------------------ 108 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAV------------------------------------------------------ 108 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHH------------------------------------------------------
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHH------------------------------------------------------
Confidence 99999999999999888888888865
Q ss_pred cCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC
Q psy16204 356 QESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS 435 (577)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~ 435 (577)
+....|+||||||+|.+...+...
T Consensus 109 -------------------------------------------------------~~~~~~~vl~iDEid~l~~~~~~~- 132 (297)
T 3b9p_A 109 -------------------------------------------------------ARHMQPSIIFIDEVDSLLSERSSS- 132 (297)
T ss_dssp -------------------------------------------------------HHHTCSEEEEEETGGGTSBCC----
T ss_pred -------------------------------------------------------HHHcCCcEEEeccHHHhccccccC-
Confidence 667789999999999999876432
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc--------------------------c
Q psy16204 436 EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV--------------------------N 489 (577)
Q Consensus 436 ~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~--------------------------~ 489 (577)
.+....++++.||..+++..... ...+++||+|||.|+.|++++++++.... +
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~-~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 211 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNP-DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT 211 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC-------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCH
T ss_pred cchHHHHHHHHHHHHHhcccccC-CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH
Confidence 23445678899999999876421 22569999999999998888887653211 1
Q ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy16204 490 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDS 569 (577)
Q Consensus 490 vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~ 569 (577)
.++..|+..+.||+++||..+|++|++.++|+.... ....+. ......|+.+||..|+..++||++.+++..|++
T Consensus 212 ~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~----~~~~~~-~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~ 286 (297)
T 3b9p_A 212 EALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE----QVKCLD-ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEK 286 (297)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh----hccccc-ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 246789999999999999999999999999874211 111111 112357999999999999999999999999999
Q ss_pred HHHhhCC
Q psy16204 570 WMNEFGS 576 (577)
Q Consensus 570 ~~~~~~~ 576 (577)
|.+.||+
T Consensus 287 ~~~~~~~ 293 (297)
T 3b9p_A 287 WSQDYGD 293 (297)
T ss_dssp HC-----
T ss_pred HHHHhCC
Confidence 9999996
No 15
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=290.10 Aligned_cols=259 Identities=41% Similarity=0.656 Sum_probs=199.5
Q ss_pred chhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 201 PSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..+.+.....++..++.+.|++|+|++.+++.|.+++.+|+.+++. .+++|||||||||||++|++||.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 95 SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp --CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3344455667888899999999999999999999999887665543 368999999999999999999999999
Q ss_pred eEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccc
Q psy16204 274 TFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRA 353 (577)
Q Consensus 274 ~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 353 (577)
+|++++|+++...|.|..+..++.+|..
T Consensus 175 ~~~~v~~~~l~~~~~g~~~~~~~~~~~~---------------------------------------------------- 202 (389)
T 3vfd_A 175 TFFNISAASLTSKYVGEGEKLVRALFAV---------------------------------------------------- 202 (389)
T ss_dssp EEEEECSCCC-------CHHHHHHHHHH----------------------------------------------------
T ss_pred cEEEeeHHHhhccccchHHHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999998888888876
Q ss_pred cccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC
Q psy16204 354 ENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS 433 (577)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~ 433 (577)
++...|+||||||||.++..+..
T Consensus 203 ---------------------------------------------------------a~~~~~~il~iDEid~l~~~~~~ 225 (389)
T 3vfd_A 203 ---------------------------------------------------------ARELQPSIIFIDQVDSLLCERRE 225 (389)
T ss_dssp ---------------------------------------------------------HHHSSSEEEEEETGGGGC-----
T ss_pred ---------------------------------------------------------HHhcCCeEEEEECchhhcccCCC
Confidence 67778999999999999886643
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc------------------------
Q psy16204 434 DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN------------------------ 489 (577)
Q Consensus 434 ~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~------------------------ 489 (577)
+.+....++++.||..+++.... ...+|+||+|||.++.|+.++++||.....
T Consensus 226 -~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l 302 (389)
T 3vfd_A 226 -GEHDASRRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL 302 (389)
T ss_dssp ----CTHHHHHHHHHHHHHHHC-------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS
T ss_pred -ccchHHHHHHHHHHHHhhccccc--CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC
Confidence 33455678999999999986642 236799999999999999999998742111
Q ss_pred --cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHH
Q psy16204 490 --LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKY 567 (577)
Q Consensus 490 --vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~ 567 (577)
.++..|+..+.||+++||..||+.|+..++|+... ..+..+. ......|+.+||..|++.++|+++.+++..|
T Consensus 303 ~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~----~~~~~~~-~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~ 377 (389)
T 3vfd_A 303 TQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP----EQVKNMS-ASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377 (389)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC----C---CCS-SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh----hhhhccc-hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 14678999999999999999999999999887431 1111111 1123579999999999999999999999999
Q ss_pred HHHHHhhCC
Q psy16204 568 DSWMNEFGS 576 (577)
Q Consensus 568 ~~~~~~~~~ 576 (577)
++|..+||+
T Consensus 378 ~~~~~~~g~ 386 (389)
T 3vfd_A 378 IRWNKDFGD 386 (389)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHhCC
Confidence 999999996
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=277.31 Aligned_cols=231 Identities=36% Similarity=0.575 Sum_probs=174.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
..|+++|+||+|++++|+.|.+++.+|+.+++. ++|+||+||||||||+||++||.+++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 357799999999999999999999888877654 368999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204 286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV 365 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (577)
+|.|+.++.++.+|+.
T Consensus 83 ~~~~~~~~~i~~vf~~---------------------------------------------------------------- 98 (274)
T 2x8a_A 83 MYVGESERAVRQVFQR---------------------------------------------------------------- 98 (274)
T ss_dssp STTHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHH----------------------------------------------------------------
Confidence 9999999999988876
Q ss_pred cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHH
Q psy16204 366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA 445 (577)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~ 445 (577)
++...|+++|+||||.++..++.. ......++.+
T Consensus 99 ---------------------------------------------a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~ 132 (274)
T 2x8a_A 99 ---------------------------------------------AKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVN 132 (274)
T ss_dssp ---------------------------------------------HHHTCSEEEEEETCTTTCC----------CTTHHH
T ss_pred ---------------------------------------------HHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHH
Confidence 666789999999999998766432 2233457889
Q ss_pred HHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc------------------------------ccccCHHHH
Q psy16204 446 ELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI------------------------------DVNLDFHKI 495 (577)
Q Consensus 446 ~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i------------------------------~~~vdl~~L 495 (577)
.++..|++.... ..++++|+||+|+.|+++++|+.++ ..++|+..|
T Consensus 133 ~~l~~Lsgg~~~----~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 2x8a_A 133 QLLTEMDGLEAR----QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 208 (274)
T ss_dssp HHHHHHHTCCST----TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHH
T ss_pred HHHHhhhccccc----CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHH
Confidence 999999987643 6799999999999999999984322 235688999
Q ss_pred HHHc--CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHH
Q psy16204 496 SKML--EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDL 564 (577)
Q Consensus 496 A~~t--~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~ 564 (577)
|..+ +||||+||.++|++|++.++|+....... ........|+.+||++|+++++||++.+++
T Consensus 209 a~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 209 AGDLRCDCYTGADLSALVREASICALRQEMARQKS------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 9874 59999999999999999999986422110 011123579999999999999999998875
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=6.6e-34 Score=322.33 Aligned_cols=358 Identities=24% Similarity=0.337 Sum_probs=230.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
..+.+.|++|+|++.+++.|.+.+.+|+.+++++ .++||+||||||||+||++||.+++.+|+.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 3457899999999999999999999988887765 47999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhh------------------------------------hccccCcceeeccccCC-------
Q psy16204 286 KYRGESEKLVRLLFEMVSFL------------------------------------VGLHSNKTFYLVGVLNG------- 322 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~a~~~------------------------------------~~~~~~~~~~~~~~~~~------- 322 (577)
++.|+.+..++.+|+.+... .+...+..++++.-.|.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHH
Confidence 99999999999999865421 11111111222111110
Q ss_pred ------CC---------------------------------------Cccchhh--------------------------
Q psy16204 323 ------EP---------------------------------------TTTFAYN-------------------------- 331 (577)
Q Consensus 323 ------~~---------------------------------------~~~~~~~-------------------------- 331 (577)
+. .++.+..
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~ 436 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhc
Confidence 00 0000000
Q ss_pred -----------------------------------------------HHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204 332 -----------------------------------------------KQILQMNRRVLKGALTTAPTRAENQESGPSIFS 364 (577)
Q Consensus 332 -----------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (577)
..+.++.+.+.++..........+..++.+++.
T Consensus 437 ~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL 516 (806)
T 1ypw_A 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516 (806)
T ss_dssp CCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCC
T ss_pred cchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEE
Confidence 000000000000001111112345567888999
Q ss_pred ccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204 365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA 439 (577)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~ 439 (577)
|+++|+||+..+.........++....... .++|+..+.++.+|..++...||||||||||.++..+++.. .+..
T Consensus 517 ~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~ 596 (806)
T 1ypw_A 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGA 596 (806)
T ss_dssp BCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchh
Confidence 999999999985544444444444443332 35788899999999999999999999999999999886542 3456
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Cccc-------------------------ccccCH
Q psy16204 440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVVI-------------------------DVNLDF 492 (577)
Q Consensus 440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~i-------------------------~~~vdl 492 (577)
..+++++||..||+.... .+|+||+|||+|+.|++++++ ||.. ..++++
T Consensus 597 ~~~v~~~LL~~ld~~~~~----~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l 672 (806)
T 1ypw_A 597 ADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL 672 (806)
T ss_dssp HHHHHHHHHTTCC----------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC
T ss_pred HHHHHHHHHHHHhccccc----CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH
Confidence 789999999999988643 679999999999999999998 4421 113367
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhH--------HhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHH
Q psy16204 493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ--------IKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDL 564 (577)
Q Consensus 493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~--------~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~ 564 (577)
+.||+.++||+|+||.++|++|++.++++.+....... ............|+.+||++|++.++|+++.+++
T Consensus 673 ~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~ 752 (806)
T 1ypw_A 673 EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDI 752 (806)
T ss_dssp SCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC----------
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHH
Confidence 78888999999999999999999999987543211000 0000111223579999999999999999999999
Q ss_pred HHHHHHHHhhC
Q psy16204 565 SKYDSWMNEFG 575 (577)
Q Consensus 565 ~~~~~~~~~~~ 575 (577)
.+|++|.++|+
T Consensus 753 ~~ye~~~~~~~ 763 (806)
T 1ypw_A 753 RKYEMFAQTLQ 763 (806)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=9.5e-30 Score=248.84 Aligned_cols=235 Identities=34% Similarity=0.484 Sum_probs=180.9
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
...+.+.|++|+|++++++.|.+++..++..++ ..+++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 456778999999999999999999988766543 336899999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204 285 SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS 364 (577)
Q Consensus 285 ~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (577)
..+.|..+..++.+|..
T Consensus 89 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 105 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKL--------------------------------------------------------------- 105 (285)
T ss_dssp CCSTTHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred HhccchHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999988888888876
Q ss_pred ccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHHHHH
Q psy16204 365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEASRR 442 (577)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~~~~ 442 (577)
+....|+||||||||.++..+.+.. .......
T Consensus 106 ----------------------------------------------~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 139 (285)
T 3h4m_A 106 ----------------------------------------------AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQR 139 (285)
T ss_dssp ----------------------------------------------HHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHH
T ss_pred ----------------------------------------------HHHcCCeEEEEECHHHhcccCccccCCccHHHHH
Confidence 6777899999999999998775432 2334556
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Ccc-------------------------cccccCHHHH
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVV-------------------------IDVNLDFHKI 495 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~-------------------------i~~~vdl~~L 495 (577)
.+..++..+++.... .+++||+|||.++.|++++++ +|. +..++++..+
T Consensus 140 ~l~~ll~~~~~~~~~----~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 215 (285)
T 3h4m_A 140 TLMQLLAEMDGFDAR----GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEI 215 (285)
T ss_dssp HHHHHHHHHHTTCSS----SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHH
T ss_pred HHHHHHHHhhCCCCC----CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHH
Confidence 777888888876643 569999999999999888887 441 1224478999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHHh
Q psy16204 496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK--SVTAHDLSKYDSWMNE 573 (577)
Q Consensus 496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p--sv~~~~~~~~~~~~~~ 573 (577)
+..+.||+++||..+|+.|+..++++.. ..|+.+||.+|+.++.+ +.....-..|..|...
T Consensus 216 ~~~~~g~~~~~i~~l~~~a~~~a~~~~~-----------------~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 278 (285)
T 3h4m_A 216 AKMTEGCVGAELKAICTEAGMNAIRELR-----------------DYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRL 278 (285)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CcCCHHHHHHHHHHHHhccccccCCchHHHHHHHH
Confidence 9999999999999999999999987742 36999999999998743 2444557789999999
Q ss_pred hCCC
Q psy16204 574 FGSH 577 (577)
Q Consensus 574 ~~~~ 577 (577)
||+|
T Consensus 279 ~~~~ 282 (285)
T 3h4m_A 279 EHHH 282 (285)
T ss_dssp ----
T ss_pred hccC
Confidence 9875
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=1.2e-29 Score=273.47 Aligned_cols=230 Identities=32% Similarity=0.431 Sum_probs=186.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
.+.+.|++|+|++.+++.|.+.+..++.+++. +.++||+||||||||++|++||++++.+|+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 35678999999999999999999888666543 3689999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204 287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 366 (577)
|.|+.+..++.+|..
T Consensus 278 ~~g~~~~~~~~~f~~----------------------------------------------------------------- 292 (489)
T 3hu3_A 278 LAGESESNLRKAFEE----------------------------------------------------------------- 292 (489)
T ss_dssp CTTHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred hcchhHHHHHHHHHH-----------------------------------------------------------------
Confidence 999999988888876
Q ss_pred ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHH
Q psy16204 367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAE 446 (577)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~ 446 (577)
+....|+||||||||.++..+... ..+...++++.
T Consensus 293 --------------------------------------------A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~ 327 (489)
T 3hu3_A 293 --------------------------------------------AEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQ 327 (489)
T ss_dssp --------------------------------------------HHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHH
T ss_pred --------------------------------------------HHhcCCcEEEecchhhhccccccc-cchHHHHHHHH
Confidence 777789999999999999977543 34566789999
Q ss_pred HHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHHHHHHc
Q psy16204 447 LLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHKISKML 499 (577)
Q Consensus 447 LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~LA~~t 499 (577)
||..|++... ..+|+||+|||+++.|++++.++.++ ..++++..++..+
T Consensus 328 LL~~ld~~~~----~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t 403 (489)
T 3hu3_A 328 LLTLMDGLKQ----RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (489)
T ss_dssp HHHHHHHSCT----TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC
T ss_pred HHHHhhcccc----CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHc
Confidence 9999998764 36799999999999988888874332 2244789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 500 ~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
.||+++||..||++|++.++++............-........|+.+||++|++.++|+
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 99999999999999999999986532221100000000012479999999999988754
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=9.6e-28 Score=258.56 Aligned_cols=212 Identities=35% Similarity=0.509 Sum_probs=175.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
.+.+.|++|+|++++++.|.+.+.. +..+ ..++++||+||||||||+||++||.+++.+|+.++++++.+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999998754 2222 345789999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204 287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 366 (577)
+.|..+..++.+|..
T Consensus 89 ~~g~~~~~~r~lf~~----------------------------------------------------------------- 103 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQ----------------------------------------------------------------- 103 (476)
T ss_dssp CTTHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred HhcccHHHHHHHHHH-----------------------------------------------------------------
Confidence 999888888888876
Q ss_pred ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHH
Q psy16204 367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFK 444 (577)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~ 444 (577)
+....||||||||||.++..++. ++.+....+++
T Consensus 104 --------------------------------------------A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l 139 (476)
T 2ce7_A 104 --------------------------------------------AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTL 139 (476)
T ss_dssp --------------------------------------------HHHTCSEEEEEETGGGTCCC---------CHHHHHH
T ss_pred --------------------------------------------HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHH
Confidence 77788999999999999988753 23345567889
Q ss_pred HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHHHHH
Q psy16204 445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHKISK 497 (577)
Q Consensus 445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~LA~ 497 (577)
+.||..||++... .+|+||+|||+|+.|+++++++.++ ..++++..+|.
T Consensus 140 ~~LL~~ld~~~~~----~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~ 215 (476)
T 2ce7_A 140 NQLLVEMDGFDSK----EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215 (476)
T ss_dssp HHHHHHHHHSCGG----GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHhccCCC----CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 9999999987643 5699999999999988888873322 23457899999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 557 (577)
Q Consensus 498 ~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p 557 (577)
.+.||+|+||.++|++|+..+.++. ...|+.+||.+|+.++.+
T Consensus 216 ~t~G~sgadL~~lv~~Aal~A~~~~-----------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 216 RTPGFVGADLENLVNEAALLAAREG-----------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHC-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHcC-----------------CCeecHHHHHHHHHHHhc
Confidence 9999999999999999999887653 246999999999998754
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.4e-27 Score=229.86 Aligned_cols=215 Identities=32% Similarity=0.467 Sum_probs=175.8
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
....+...|++|+|++.+++.|.+.+.+ +..+ ..++++||+||||||||++|++||.+++.+|+.++++++
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 3456788999999999999999987654 3322 235789999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
.+.+.|..+..++.+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 99 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQ-------------------------------------------------------------- 99 (257)
T ss_dssp TTSCCCCCHHHHHHHHHH--------------------------------------------------------------
T ss_pred HHHhhhhhHHHHHHHHHH--------------------------------------------------------------
Confidence 998888888888888875
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASR 441 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~ 441 (577)
+....|+++||||||.++..++.. +......
T Consensus 100 -----------------------------------------------a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~ 132 (257)
T 1lv7_A 100 -----------------------------------------------AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 132 (257)
T ss_dssp -----------------------------------------------HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHH
T ss_pred -----------------------------------------------HHHcCCeeehhhhhhhhccCCCCCcCCCchHHH
Confidence 666678999999999999876432 2234456
Q ss_pred HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Cc-------------------------ccccccCHHH
Q psy16204 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GV-------------------------VIDVNLDFHK 494 (577)
Q Consensus 442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~-------------------------~i~~~vdl~~ 494 (577)
+.++.+|..+++... ..+++||+|||.++.|++++++ +| .+..++++..
T Consensus 133 ~~~~~ll~~l~~~~~----~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~ 208 (257)
T 1lv7_A 133 QTLNQMLVEMDGFEG----NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI 208 (257)
T ss_dssp HHHHHHHHHHHTCCS----SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHHHhhCccc----CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHH
Confidence 788999999998764 3679999999999988777776 32 2223456888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 557 (577)
Q Consensus 495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p 557 (577)
++..+.||+++||.++|++|+..+.++.. ..|+.+||.+|+.++..
T Consensus 209 la~~~~G~~~~dl~~l~~~a~~~a~~~~~-----------------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 209 IARGTPGFSGADLANLVNEAALFAARGNK-----------------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CcccHHHHHHHHHHHhc
Confidence 99999999999999999999999877632 47999999999998754
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=8.2e-28 Score=230.97 Aligned_cols=212 Identities=30% Similarity=0.431 Sum_probs=156.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~ 287 (577)
+++.|++|+|++.+++.|.+.+.. +..+ ..++++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 468899999999999999988754 2222 2346899999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204 288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV 367 (577)
Q Consensus 288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
.|..+..++.+|..
T Consensus 80 ~~~~~~~~~~~~~~------------------------------------------------------------------ 93 (262)
T 2qz4_A 80 GGLGAARVRSLFKE------------------------------------------------------------------ 93 (262)
T ss_dssp TTHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred cChhHHHHHHHHHH------------------------------------------------------------------
Confidence 88888888877765
Q ss_pred cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC---hhHHHHHHH
Q psy16204 368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS---EHEASRRFK 444 (577)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~---~~~~~~~v~ 444 (577)
+....|+||||||||.++..+.... .+......+
T Consensus 94 -------------------------------------------a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l 130 (262)
T 2qz4_A 94 -------------------------------------------ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTL 130 (262)
T ss_dssp -------------------------------------------HHHTCSEEEEEECC-------------------CHHH
T ss_pred -------------------------------------------HHhcCCeEEEEeCcchhhccccccccCccchhHHHHH
Confidence 6667789999999999988664321 123344668
Q ss_pred HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Cccccccc---------------------------CHHHH
Q psy16204 445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVVIDVNL---------------------------DFHKI 495 (577)
Q Consensus 445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~i~~~v---------------------------dl~~L 495 (577)
+.||..+++... ..+++||+|||.++.|++++++ ||.....+ .+..+
T Consensus 131 ~~ll~~~~~~~~----~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l 206 (262)
T 2qz4_A 131 NQLLVEMDGMGT----TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRL 206 (262)
T ss_dssp HHHHHHHHTCCT----TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHH
T ss_pred HHHHHHhhCcCC----CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 889999998764 2579999999999999999988 55211111 23678
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
+..+.||+++||.++|++|+..++++.. ..|+.+||.+|++++.++
T Consensus 207 ~~~~~g~~~~~l~~l~~~a~~~a~~~~~-----------------~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 207 AELTPGFSGADIANICNEAALHAAREGH-----------------TSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHTCTTCCHHHHHHHHHHHHTC-------------------------CCBCCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHhccC
Confidence 9999999999999999999998887642 368899999999987543
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=5.2e-26 Score=246.37 Aligned_cols=212 Identities=34% Similarity=0.477 Sum_probs=175.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~ 287 (577)
+.++|++|+|+++++..|.+.+.. +..+ .+++++||+||||||||+||++||.+++.+|+.++++++.+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 778999999999999999988754 2222 2357899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204 288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV 367 (577)
Q Consensus 288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
.|..+..++.+|+.
T Consensus 105 ~g~~~~~v~~lfq~------------------------------------------------------------------ 118 (499)
T 2dhr_A 105 VGVGAARVRDLFET------------------------------------------------------------------ 118 (499)
T ss_dssp TTHHHHHHHHHTTT------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHH------------------------------------------------------------------
Confidence 99888888888865
Q ss_pred cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHHH
Q psy16204 368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKA 445 (577)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~~ 445 (577)
+....|||+||||||.++..++. +..+....+.++
T Consensus 119 -------------------------------------------a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~ 155 (499)
T 2dhr_A 119 -------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN 155 (499)
T ss_dssp -------------------------------------------SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH
T ss_pred -------------------------------------------HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH
Confidence 44456899999999999887753 123455667899
Q ss_pred HHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHHHHHH
Q psy16204 446 ELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHKISKM 498 (577)
Q Consensus 446 ~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~LA~~ 498 (577)
.||..|++.... ..+++||+||+|+.|+++++++.++ ..++++..||..
T Consensus 156 ~LL~~Ldg~~~~----~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~ 231 (499)
T 2dhr_A 156 QLLVEMDGFEKD----TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 231 (499)
T ss_dssp HHHHHGGGCCSS----CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTT
T ss_pred HHHHHhcccccC----ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Confidence 999999987643 5689999999999988888875433 234578999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 499 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 499 t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
+.||+|+||.++|++|+..+.++. ...|+.+||.+|+.++.+.
T Consensus 232 t~G~~gadL~~lv~~Aa~~A~~~~-----------------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 232 TPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTTTC-----------------CSSCCSHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHHhcc
Confidence 999999999999999998886652 1369999999999998654
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=1.6e-25 Score=216.71 Aligned_cols=210 Identities=35% Similarity=0.497 Sum_probs=165.7
Q ss_pred hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
+...+.++|++|+|+++++..+++.+.. +..+ .++++++|+||||||||+|+++||..++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999887653 2222 234689999999999999999999999999999999888
Q ss_pred ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204 284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF 363 (577)
Q Consensus 284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (577)
...+.|..+..++.+|+.
T Consensus 86 ~~~~~~~~~~~i~~~~~~-------------------------------------------------------------- 103 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFET-------------------------------------------------------------- 103 (254)
T ss_dssp HHSCTTHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHH--------------------------------------------------------------
Confidence 777777777777777765
Q ss_pred cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHH
Q psy16204 364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASR 441 (577)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~ 441 (577)
+....|+++||||||.++..++.+ ..+....
T Consensus 104 -----------------------------------------------~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~ 136 (254)
T 1ixz_A 104 -----------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE 136 (254)
T ss_dssp -----------------------------------------------HTTSSSEEEEEETHHHHHC---------CHHHH
T ss_pred -----------------------------------------------HHhcCCeEEEehhhhhhhcccCccccccchHHH
Confidence 445568999999999998766431 2334556
Q ss_pred HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHH
Q psy16204 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHK 494 (577)
Q Consensus 442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~ 494 (577)
+.++.++..|++... ...++++++||.|+.|+++++++.++ ..++++..
T Consensus 137 ~~~~~ll~~l~g~~~----~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 212 (254)
T 1ixz_A 137 QTLNQLLVEMDGFEK----DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 212 (254)
T ss_dssp HHHHHHHHHHHTCCT----TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHHHHhCCCC----CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHH
Confidence 788999999998764 35689999999999988888874433 22457899
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHH
Q psy16204 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI 552 (577)
Q Consensus 495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al 552 (577)
+|..++||+|+||.++|++|+..++++. ...||.+||++|+
T Consensus 213 la~~~~G~~~~dl~~~~~~a~~~a~~~~-----------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 213 LAKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAA 253 (254)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHh
Confidence 9999999999999999999998887653 1369999999886
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=4e-28 Score=235.79 Aligned_cols=218 Identities=32% Similarity=0.483 Sum_probs=161.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
..+.+.|++|+|++.+++.|.+.+.. +..++ .++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678999999999999999998754 33332 2468999999999999999999999999999999988766
Q ss_pred ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204 286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV 365 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (577)
.+.|..+..+
T Consensus 83 ~~~~~~~~~~---------------------------------------------------------------------- 92 (268)
T 2r62_A 83 MFVGLGASRV---------------------------------------------------------------------- 92 (268)
T ss_dssp SCSSSCSSSS----------------------------------------------------------------------
T ss_pred hhcchHHHHH----------------------------------------------------------------------
Confidence 5554432222
Q ss_pred cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC---hhHHHHH
Q psy16204 366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS---EHEASRR 442 (577)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~---~~~~~~~ 442 (577)
+..+..+....|+||||||+|.+...+..++ .+....+
T Consensus 93 ---------------------------------------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 133 (268)
T 2r62_A 93 ---------------------------------------RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQ 133 (268)
T ss_dssp ---------------------------------------STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCS
T ss_pred ---------------------------------------HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHH
Confidence 2334447777899999999999988653221 1112224
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHH
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKI 495 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~L 495 (577)
+++.||..+++... ...+|+||+|||.++.|+++++++.+++ .++++..|
T Consensus 134 ~~~~ll~~l~~~~~---~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 210 (268)
T 2r62_A 134 TLNQLLAEMDGFGS---ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEV 210 (268)
T ss_dssp STTTTTTTTTCSSC---SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTT
T ss_pred HHHHHHHHhhCccc---CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHH
Confidence 56778888887653 2356899999999998888888733221 23467888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCH
Q psy16204 496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA 561 (577)
Q Consensus 496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~ 561 (577)
+..+.||+|+||.++|++|+..++++. ...|+.+||.+|+.++.|+...
T Consensus 211 a~~~~g~~g~dl~~l~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 211 AKLTAGLAGADLANIINEAALLAGRNN-----------------QKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp TSSSCSSCHHHHHHHHHHHHHTTSSSC-----------------CCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHhhcchh
Confidence 889999999999999999988775432 2479999999999999887554
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=8.9e-24 Score=208.18 Aligned_cols=209 Identities=35% Similarity=0.501 Sum_probs=164.0
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
...+.++|++|+|+++++..|.+.+.. +..+ .++++++|+||||||||+|+++||..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 344788999999999999999887643 2221 2346899999999999999999999999999999998887
Q ss_pred cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204 285 SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS 364 (577)
Q Consensus 285 ~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (577)
..+.+.....++.+|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~--------------------------------------------------------------- 127 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFET--------------------------------------------------------------- 127 (278)
T ss_dssp HSTTTHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHH---------------------------------------------------------------
Confidence 77777776777777765
Q ss_pred ccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHHH
Q psy16204 365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRR 442 (577)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~~ 442 (577)
+....|+++||||||.++..+... ........
T Consensus 128 ----------------------------------------------~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~ 161 (278)
T 1iy2_A 128 ----------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ 161 (278)
T ss_dssp ----------------------------------------------HHTSCSEEEEEETHHHHHCC--------CHHHHH
T ss_pred ----------------------------------------------HHhcCCcEEehhhhHhhhcccccccCCcchHHHH
Confidence 555678999999999998765431 12344567
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHH
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKI 495 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~L 495 (577)
.++.++..+++... ...++++++||.|+.|+++++++.+++ .++++..+
T Consensus 162 ~~~~ll~~lsgg~~----~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 237 (278)
T 1iy2_A 162 TLNQLLVEMDGFEK----DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALL 237 (278)
T ss_dssp HHHHHHHHHTTCCT----TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHH
T ss_pred HHHHHHHHHhCCCC----CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHH
Confidence 78889999987653 356899999999999988888744332 24478899
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHH
Q psy16204 496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI 552 (577)
Q Consensus 496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al 552 (577)
|..++||+++||.++|++|+..+.++. ...|+.+||++|+
T Consensus 238 a~~~~G~~~~dl~~l~~~a~~~a~~~~-----------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 238 AKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAA 277 (278)
T ss_dssp HHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CCSBCHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHh
Confidence 999999999999999999998887653 1369999999886
No 27
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.88 E-value=6.3e-22 Score=212.00 Aligned_cols=344 Identities=16% Similarity=0.186 Sum_probs=182.7
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCc---------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cccc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMP---------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG 289 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~---------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G 289 (577)
.++|+|++++|+.|..++..+.+++ ..++++||+||||||||++|++||+.++.+|+.++++.+.+ +|+|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3579999999999999987653332 23478999999999999999999999999999999999988 6999
Q ss_pred c-hHHHHHHHHHHhhhhhccccCc----------ceeeccccCCCCCccchh-------hHHHHHHHHHhhcccccCCcc
Q psy16204 290 E-SEKLVRLLFEMVSFLVGLHSNK----------TFYLVGVLNGEPTTTFAY-------NKQILQMNRRVLKGALTTAPT 351 (577)
Q Consensus 290 ~-~e~~vr~lF~~a~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~ 351 (577)
. .+..++.+|+.|..+.-..-.. .--++..+-...++..+. ..-...+..++..|..-....
T Consensus 94 ~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i 173 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEI 173 (444)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEE
Confidence 6 7999999998764332100000 001111111111111111 111222333343333322222
Q ss_pred cccccCCCCccccc-cccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCC
Q psy16204 352 RAENQESGPSIFSV-MVDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAP 416 (577)
Q Consensus 352 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p 416 (577)
+....+..+..+-+ .++|+...-..++.|+..+++..++++.... +.|++.+.++++.++..+.
T Consensus 174 ~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~- 252 (444)
T 1g41_A 174 EIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNG- 252 (444)
T ss_dssp ----------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCC-
Confidence 22222222112221 1355544445677778777776555444332 6688999999988887776
Q ss_pred eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEec----CCchhhHHHhhcCccccc
Q psy16204 417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAAT----NHPYQLLTLCLEGVVIDV 488 (577)
Q Consensus 417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIatT----N~p~~L~~allrr~~i~~ 488 (577)
|||+||||+|+...++...+...+.+++.||+.||+...+. ++..+|++|||. +.|.++.+.++.|+++..
T Consensus 253 -il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i 331 (444)
T 1g41_A 253 -IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 331 (444)
T ss_dssp -EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred -eeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence 99999999999865444557777889999999999854321 356789999997 456667789999987742
Q ss_pred cc------CHHHHHHH--------------cCC----CCHHHHHHHHHHHHH----------HHHHHHHhcCChhHHhhh
Q psy16204 489 NL------DFHKISKM--------------LEG----YTGSDIANLARDAAM----------MSIRRKIMGQTPAQIKEI 534 (577)
Q Consensus 489 ~v------dl~~LA~~--------------t~G----~sgsDI~~l~~~Aa~----------~airr~~~~~~~~~~~~~ 534 (577)
.+ ++..|+.. ++| |+...+..+++.|.. +.+++.+........-++
T Consensus 332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~ 411 (444)
T 1g41_A 332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 411 (444)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhc
Confidence 22 33444421 122 667777777776543 233333322211111222
Q ss_pred hcc-CCCCCCCHHHHHHHHHHhCCCCCHHHHHHHH
Q psy16204 535 KQE-DIDLPVTEKDFREAIARCRKSVTAHDLSKYD 568 (577)
Q Consensus 535 ~~~-~~~~~It~~df~~Al~~~~psv~~~~~~~~~ 568 (577)
... .....||.+++.+.+ .|.+...||++|-
T Consensus 412 ~~~~~~~~~i~~~~v~~~l---~~~~~~~dl~~~~ 443 (444)
T 1g41_A 412 SDMNGQTVNIDAAYVADAL---GEVVENEDLSRFI 443 (444)
T ss_dssp GGCTTCEEEECHHHHHHHH---TTTTTCHHHHHHH
T ss_pred cccCCCeEEEeHHHHHHhc---CccccCCChhccc
Confidence 211 123468999998766 4667889999883
No 28
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.88 E-value=1.1e-23 Score=239.26 Aligned_cols=235 Identities=24% Similarity=0.232 Sum_probs=188.6
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCccc---C
Q psy16204 319 VLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---S 395 (577)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 395 (577)
.....|.++.|....+.++++.+..+-.++..+...+..+|-|++.|+++|+||+..+.+.+.+...++....... .
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3457788889999999999999998888899999999999999999999999999987666655555554443322 4
Q ss_pred CCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchh
Q psy16204 396 HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ 475 (577)
Q Consensus 396 ~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~ 475 (577)
++|+.+..++++|..|+.+.||||||||||.|++.|++.. ++..++++++||..||++... .+|+||||||+|+.
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~----~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNS 352 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG----GCEEEEEECSSTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc----CCEEEEEecCChhh
Confidence 5899999999999999999999999999999999886543 455678999999999999854 67999999999999
Q ss_pred hHHHhhcCcccc---------------------------cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy16204 476 LLTLCLEGVVID---------------------------VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP 528 (577)
Q Consensus 476 L~~allrr~~i~---------------------------~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~ 528 (577)
|+++++|+.+|+ .++|+..||.+|+||+|+||.+||++|++.+++|.......
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999854433 24589999999999999999999999999999997632111
Q ss_pred hHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204 529 AQIKEIKQEDIDLPVTEKDFREAIARCRKS 558 (577)
Q Consensus 529 ~~~~~~~~~~~~~~It~~df~~Al~~~~ps 558 (577)
..............|+.+||..|+..++|+
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 000000000012468999999999998865
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=5.6e-23 Score=206.11 Aligned_cols=161 Identities=18% Similarity=0.202 Sum_probs=116.4
Q ss_pred ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCC
Q psy16204 244 PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGE 323 (577)
Q Consensus 244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~ 323 (577)
...++++|||||||||||+||++||++++.+|++++++++.++|.|..+..++.+|..|.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~-------------------- 92 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA-------------------- 92 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHH--------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHH--------------------
Confidence 445689999999999999999999999999999999999999999999999999997621
Q ss_pred CCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhh
Q psy16204 324 PTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRI 403 (577)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 403 (577)
T Consensus 93 -------------------------------------------------------------------------------- 92 (293)
T 3t15_A 93 -------------------------------------------------------------------------------- 92 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHhcCCeEEEEccccccccCCCCCCh-hHHHHHHHHHHHHHHhCCCC-------CcCCCceEEEEEecCCchh
Q psy16204 404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-HEASRRFKAELLIQMDGLNS-------SLYEDKIIMILAATNHPYQ 475 (577)
Q Consensus 404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~~~v~~~LL~~mD~~~~-------~~~~~~~VlIIatTN~p~~ 475 (577)
..++...||||||||||++++.+++... ....+.+++.||+.||+... ......+|+||+|||.++.
T Consensus 93 -----~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ 167 (293)
T 3t15_A 93 -----EIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 167 (293)
T ss_dssp -----HHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC
T ss_pred -----HHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc
Confidence 1135678999999999999986543322 22455788999999996541 1123467999999999999
Q ss_pred hHHHhhcCcccc---------------------cccCHHHHHHHcCCCCHHHHHH
Q psy16204 476 LLTLCLEGVVID---------------------VNLDFHKISKMLEGYTGSDIAN 509 (577)
Q Consensus 476 L~~allrr~~i~---------------------~~vdl~~LA~~t~G~sgsDI~~ 509 (577)
|+++++|+.+++ ..++++.+++.++||+++||..
T Consensus 168 ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 168 LYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp --CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHH
T ss_pred CCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHH
Confidence 999998744332 2357889999999999998864
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=6.6e-23 Score=217.27 Aligned_cols=187 Identities=18% Similarity=0.143 Sum_probs=125.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHH
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEK 293 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~ 293 (577)
+...|++|+|++++++.+..++..-......++++||+||||||||++|+++|++++ .+|+.++++++.++|.|+++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV 111 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence 445789999999999988887754322333347999999999999999999999999 999999999999999999988
Q ss_pred HHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCC
Q psy16204 294 LVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG 373 (577)
Q Consensus 294 ~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (577)
++.+|..|..
T Consensus 112 -~~~~f~~a~~--------------------------------------------------------------------- 121 (456)
T 2c9o_A 112 -LMENFRRAIG--------------------------------------------------------------------- 121 (456)
T ss_dssp -HHHHHHHTEE---------------------------------------------------------------------
T ss_pred -HHHHHHHHHh---------------------------------------------------------------------
Confidence 8888876210
Q ss_pred CcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHH--------------
Q psy16204 374 PWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEA-------------- 439 (577)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~-------------- 439 (577)
.+...||||||||||.+++.|+.......
T Consensus 122 -------------------------------------~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~ 164 (456)
T 2c9o_A 122 -------------------------------------LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTA 164 (456)
T ss_dssp -------------------------------------EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEET
T ss_pred -------------------------------------hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhcc
Confidence 14567899999999999998865421111
Q ss_pred ----HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc------------------------cC
Q psy16204 440 ----SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN------------------------LD 491 (577)
Q Consensus 440 ----~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~------------------------vd 491 (577)
..++.+.++..++..... ..+.|+|+||||+++.+++++.|..+++.. .|
T Consensus 165 ~~~~~~~~~~~ll~~l~~~~~~--~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~d 242 (456)
T 2c9o_A 165 KGTKQLKLDPSIFESLQKERVE--AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHD 242 (456)
T ss_dssp TEEEEEEECHHHHHHHHHTTCC--TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHH
T ss_pred ccchhHhhhHHHHHHHhhccCC--CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHH
Confidence 112334466666633221 335677789999999999999776555431 15
Q ss_pred HHHHHHHcCCCCHHHHHHHHHH
Q psy16204 492 FHKISKMLEGYTGSDIANLARD 513 (577)
Q Consensus 492 l~~LA~~t~G~sgsDI~~l~~~ 513 (577)
++.++..++| |+||.++|..
T Consensus 243 l~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 243 LDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHHTC-----------------
T ss_pred HHHHHHhCCC--hhHHHHHHhh
Confidence 7889999999 9999999954
No 31
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=7.9e-18 Score=164.57 Aligned_cols=232 Identities=20% Similarity=0.290 Sum_probs=149.2
Q ss_pred ccccCcHHHHHHHHHHHHCcCCC---------ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIM---------PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGE 290 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~---------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~ 290 (577)
++|+|++.+++.|..++..+..+ ...+.++||+||||||||++|+++|+.++.+++.++|+++.. .|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 56999999999999988653221 123468999999999999999999999999999999998876 66664
Q ss_pred h-HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204 291 S-EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG 369 (577)
Q Consensus 291 ~-e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (577)
. +..++.+|..+.
T Consensus 95 ~~~~~~~~~~~~~~------------------------------------------------------------------ 108 (310)
T 1ofh_A 95 EVDSIIRDLTDSAG------------------------------------------------------------------ 108 (310)
T ss_dssp STTHHHHHHHHTTT------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHhh------------------------------------------------------------------
Confidence 4 445666664300
Q ss_pred CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204 370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI 449 (577)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~ 449 (577)
..+ .....++||||||||.+.......+.+.....+++.||.
T Consensus 109 ------------------------------------~~~--~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~ 150 (310)
T 1ofh_A 109 ------------------------------------GAI--DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP 150 (310)
T ss_dssp ------------------------------------TCH--HHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHH
T ss_pred ------------------------------------HHH--hhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHH
Confidence 000 111235799999999999877555556666678899999
Q ss_pred HHhCCCCC----cCCCceEEEEEe----cCCchhhHHHhhcCcccccc---c---CHHHHHHH--------------cCC
Q psy16204 450 QMDGLNSS----LYEDKIIMILAA----TNHPYQLLTLCLEGVVIDVN---L---DFHKISKM--------------LEG 501 (577)
Q Consensus 450 ~mD~~~~~----~~~~~~VlIIat----TN~p~~L~~allrr~~i~~~---v---dl~~LA~~--------------t~G 501 (577)
.+++.... .....+++||++ ++.+..+++.+..|+..... + ++..+.+. ..|
T Consensus 151 ~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 230 (310)
T 1ofh_A 151 LVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 230 (310)
T ss_dssp HHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT
T ss_pred HhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 99964210 112245788888 56888899999998853222 2 22333331 123
Q ss_pred ----CCHHHHHHHHHHHHH-------HHHHHHHh---cCChhHHhhhh-ccCCCCCCCHHHHHHHHHHhC
Q psy16204 502 ----YTGSDIANLARDAAM-------MSIRRKIM---GQTPAQIKEIK-QEDIDLPVTEKDFREAIARCR 556 (577)
Q Consensus 502 ----~sgsDI~~l~~~Aa~-------~airr~~~---~~~~~~~~~~~-~~~~~~~It~~df~~Al~~~~ 556 (577)
++...+..+++.++. ..+|+... .......-... .......|+.+|+++|+....
T Consensus 231 ~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 231 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred CeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 677777777776643 12233211 00000000111 111122599999999998653
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.75 E-value=3.7e-18 Score=168.32 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=129.8
Q ss_pred cccccCcHHHHHHHHHHHHCcC----------CCccccceeEEecCCCCChHHHHHHHHHHhC-------CeEEEEecCc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPT----------IMPEFFKEALERHSHGTGKTMLAKAVATECG-------TTFFNVSSST 282 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl----------~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-------~~fv~v~~s~ 282 (577)
+.+|+|++.+++.|.+.+..+. .......++||+||||||||++|+++|+.++ .+++.+++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 3489999999999998886532 2233346799999999999999999999983 4899999999
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204 283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI 362 (577)
Q Consensus 283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (577)
+...+.|..+..++.+|..
T Consensus 110 l~~~~~g~~~~~~~~~~~~------------------------------------------------------------- 128 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKR------------------------------------------------------------- 128 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred hhhhcccccHHHHHHHHHh-------------------------------------------------------------
Confidence 9999999888877776654
Q ss_pred ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204 363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR 442 (577)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~ 442 (577)
+ .++||||||+|.++..+.+ +.....
T Consensus 129 ------------------------------------------------~---~~~vl~iDEid~l~~~~~~---~~~~~~ 154 (309)
T 3syl_A 129 ------------------------------------------------A---MGGVLFIDEAYYLYRPDNE---RDYGQE 154 (309)
T ss_dssp ------------------------------------------------H---TTSEEEEETGGGSCCCC------CCTHH
T ss_pred ------------------------------------------------c---CCCEEEEEChhhhccCCCc---ccccHH
Confidence 2 3579999999999875532 223356
Q ss_pred HHHHHHHHHhCCCCCcCCCceEEEEEecCCchh-----hHHHhhcCcccccc-----------------------c---C
Q psy16204 443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ-----LLTLCLEGVVIDVN-----------------------L---D 491 (577)
Q Consensus 443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~-----L~~allrr~~i~~~-----------------------v---d 491 (577)
+++.|+..|+... .+++||++||.+.. +++.+.+|+..... + .
T Consensus 155 ~~~~Ll~~l~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 155 AIEILLQVMENNR------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp HHHHHHHHHHHCT------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred HHHHHHHHHhcCC------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7889999998754 34788899887642 34556655521110 1 1
Q ss_pred HHHHHHHc------CCCC-HHHHHHHHHHHHHHHHHHHH
Q psy16204 492 FHKISKML------EGYT-GSDIANLARDAAMMSIRRKI 523 (577)
Q Consensus 492 l~~LA~~t------~G~s-gsDI~~l~~~Aa~~airr~~ 523 (577)
+..++..+ ..+. +.++.++++.|+..+..+..
T Consensus 229 ~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 229 ETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 23344432 2222 67888888888887777755
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=1.2e-17 Score=168.59 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=64.1
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC--eEEEEecCccccccccchHHHH
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTLTSKYRGESEKLV 295 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l~~k~~G~~e~~v 295 (577)
..|++++|++.+++.+...+..-.......+++||+||||||||++|+++|++++. +|+.+++..+...+.+..+. +
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 119 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-L 119 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHH-H
T ss_pred cchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHH-H
Confidence 34999999999998865554321111222478999999999999999999999985 89999999998888887764 5
Q ss_pred HHHHHH
Q psy16204 296 RLLFEM 301 (577)
Q Consensus 296 r~lF~~ 301 (577)
...|..
T Consensus 120 ~~~~~~ 125 (368)
T 3uk6_A 120 TQAFRR 125 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.73 E-value=7.8e-17 Score=161.42 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=60.9
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
+..|..++.+..|++++|++.+++.|...+.........+.++||+||||||||++|+++|+.++.+|+.++|..+
T Consensus 16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 3466677888899999999999999999987654334455789999999999999999999999999999999765
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=3.3e-16 Score=153.22 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=119.8
Q ss_pred cccccCcHHHHHHHHHH---HHCcCC--CccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchH--
Q psy16204 220 WNKVAGLTEAKAILQEA---MVLPTI--MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE-- 292 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~---l~~pl~--~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e-- 292 (577)
...++|+..+.+.+... +...+. ......++||+||||||||++|+++|++++.+|+.+++++. +.|..+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHH
Confidence 35678887776655553 111111 12334789999999999999999999999999999998763 333322
Q ss_pred --HHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCC
Q psy16204 293 --KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGL 370 (577)
Q Consensus 293 --~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (577)
..++.+|+.
T Consensus 109 ~~~~~~~~~~~--------------------------------------------------------------------- 119 (272)
T 1d2n_A 109 KCQAMKKIFDD--------------------------------------------------------------------- 119 (272)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 333444432
Q ss_pred CCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHH
Q psy16204 371 GKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQ 450 (577)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~ 450 (577)
+....++||||||||.++..+..+. .....+++.|+..
T Consensus 120 ----------------------------------------~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l~~L~~~ 157 (272)
T 1d2n_A 120 ----------------------------------------AYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVL 157 (272)
T ss_dssp ----------------------------------------HHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHH
T ss_pred ----------------------------------------HHhcCCcEEEEEChhhhhccCCCCh--hHHHHHHHHHHHH
Confidence 5556689999999999977653222 2234566777777
Q ss_pred HhCCCCCcCCCceEEEEEecCCchhhHH-HhhcCcccccc-------cCHHHHHHHcCCCCHHHHHHHHHHH
Q psy16204 451 MDGLNSSLYEDKIIMILAATNHPYQLLT-LCLEGVVIDVN-------LDFHKISKMLEGYTGSDIANLARDA 514 (577)
Q Consensus 451 mD~~~~~~~~~~~VlIIatTN~p~~L~~-allrr~~i~~~-------vdl~~LA~~t~G~sgsDI~~l~~~A 514 (577)
+++... ...+++||+|||.++.|++ .+.++|..... -++..+.....+++..++..+++.+
T Consensus 158 ~~~~~~---~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~ 226 (272)
T 1d2n_A 158 LKKAPP---QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV 226 (272)
T ss_dssp TTCCCS---TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcCccC---CCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 776542 2467999999999999888 56666532211 2456666666788888887777654
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=2.2e-18 Score=187.48 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccc-cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
....+++++|+++++..+.+.+.+....... ...+||+||||||||+||++||..++.+|..+++..+.
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3456678999999999998877653322222 34799999999999999999999999999999998653
No 37
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=7.3e-17 Score=179.96 Aligned_cols=182 Identities=18% Similarity=0.166 Sum_probs=125.8
Q ss_pred CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCcccc-ceeEEecCCC
Q psy16204 182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFF-KEALERHSHG 257 (577)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~-k~ILL~GPpG 257 (577)
..+..+++.+.+...++++...+...+...+........++|+|++.+++.|..++.. .+..+..+ .++||+||||
T Consensus 419 ~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~G 498 (758)
T 1r6b_X 419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTG 498 (758)
T ss_dssp CSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTT
T ss_pred CccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCC
Confidence 4566778888887777776544322222222222223456899999999999888754 23333333 4699999999
Q ss_pred CChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHH
Q psy16204 258 TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM 337 (577)
Q Consensus 258 tGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (577)
||||++|+++|+.++.+|+.++|+++.+++. +..+.|.++++.|+.
T Consensus 499 tGKT~la~~la~~l~~~~~~i~~s~~~~~~~----------------------------~~~l~g~~~g~~g~~------ 544 (758)
T 1r6b_X 499 VGKTEVTVQLSKALGIELLRFDMSEYMERHT----------------------------VSRLIGAPPGYVGFD------ 544 (758)
T ss_dssp SSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC----------------------------CSSSCCCCSCSHHHH------
T ss_pred CcHHHHHHHHHHHhcCCEEEEechhhcchhh----------------------------HhhhcCCCCCCcCcc------
Confidence 9999999999999999999999998876421 345556666666651
Q ss_pred HHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCe
Q psy16204 338 NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS 417 (577)
Q Consensus 338 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~ 417 (577)
.++.+.+. ++...++
T Consensus 545 --------------------------------------------------------------~~~~l~~~---~~~~~~~ 559 (758)
T 1r6b_X 545 --------------------------------------------------------------QGGLLTDA---VIKHPHA 559 (758)
T ss_dssp --------------------------------------------------------------HTTHHHHH---HHHCSSE
T ss_pred --------------------------------------------------------------ccchHHHH---HHhCCCc
Confidence 11222222 4456679
Q ss_pred EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCch
Q psy16204 418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPY 474 (577)
Q Consensus 418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~ 474 (577)
||||||||++.+ .+++.||+.||.-. +...+..+++||+|||.+.
T Consensus 560 vl~lDEi~~~~~------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~ 609 (758)
T 1r6b_X 560 VLLLDEIEKAHP------------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_dssp EEEEETGGGSCH------------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred EEEEeCccccCH------------HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence 999999999865 68999999998421 1122346789999999854
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=7.1e-17 Score=164.96 Aligned_cols=80 Identities=29% Similarity=0.316 Sum_probs=63.2
Q ss_pred cccCcHHHHHHHHHHHHCcC----------CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc-cccc
Q psy16204 222 KVAGLTEAKAILQEAMVLPT----------IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK-YRGE 290 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl----------~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k-~~G~ 290 (577)
.|+|++.+++.|..++.... .......++||+||||||||++|++||+.++.+|+.++|+++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 48999999999999884211 111234689999999999999999999999999999999988753 7776
Q ss_pred h-HHHHHHHHHH
Q psy16204 291 S-EKLVRLLFEM 301 (577)
Q Consensus 291 ~-e~~vr~lF~~ 301 (577)
+ +..++.+|..
T Consensus 96 ~~~~~~~~~~~~ 107 (363)
T 3hws_A 96 DVENIIQKLLQK 107 (363)
T ss_dssp HHTHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 5 5556666654
No 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=1.1e-15 Score=171.16 Aligned_cols=106 Identities=26% Similarity=0.212 Sum_probs=72.5
Q ss_pred CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCccccc-eeEEecCCCC
Q psy16204 183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFFK-EALERHSHGT 258 (577)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~k-~ILL~GPpGt 258 (577)
.+..+++...+...+|++...+...+...+........++|+|++.+++.|.+++... +..+..+. ++||+|||||
T Consensus 453 ~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~Gt 532 (758)
T 3pxi_A 453 EVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGV 532 (758)
T ss_dssp -CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTS
T ss_pred ccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCC
Confidence 4556777777877778776554443333333333334578999999999999988643 22333333 6999999999
Q ss_pred ChHHHHHHHHHHh---CCeEEEEecCccccccc
Q psy16204 259 GKTMLAKAVATEC---GTTFFNVSSSTLTSKYR 288 (577)
Q Consensus 259 GKT~LAkaLA~el---~~~fv~v~~s~l~~k~~ 288 (577)
|||++|++||+.+ +.+|++++|+++.+.+.
T Consensus 533 GKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 533 GKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp SHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 9999999999998 68999999999877654
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.64 E-value=1.3e-15 Score=150.82 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=58.4
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
+++.+..|++++|.+.+++.|...+...........++||+||||||||++|+++|++++.+|+.++|+.+
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 34566789999999999999998885422112234689999999999999999999999999999999865
No 41
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.61 E-value=8.9e-16 Score=157.29 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=55.9
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCc-------------------------cccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMP-------------------------EFFKEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~-------------------------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
+.|+|++.+++.|..++..+..+. ....++||+||||||||++|++||+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 468999999999998884222111 1235799999999999999999999999999
Q ss_pred EEEecCccc-cccccch-HHHHHHHH
Q psy16204 276 FNVSSSTLT-SKYRGES-EKLVRLLF 299 (577)
Q Consensus 276 v~v~~s~l~-~k~~G~~-e~~vr~lF 299 (577)
+.++|..+. ..|.|.. +..+..+|
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 126 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLL 126 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHH
T ss_pred EEecchhhhhcCcCCccHHHHHHHHH
Confidence 999998875 3455543 33344444
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.61 E-value=3.9e-14 Score=129.31 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=57.1
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL 283 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l 283 (577)
.|..++++..+++++|.+.+++.|.+.+... ...++||+||||||||++|+++++++ ...++.++++..
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 4666788889999999999999999998653 12359999999999999999999986 356788887654
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=3.9e-15 Score=146.49 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=54.0
Q ss_pred CcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS 285 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~ 285 (577)
..++|+|++.+++.|...+... +..+..+ ..+||+||||||||++|++||+.+ +.+|+.++|+.+..
T Consensus 15 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 15 LHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred HhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 3467899999999999988553 2333333 479999999999999999999998 56799999987754
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=2.6e-15 Score=134.11 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=64.0
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS 279 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~ 279 (577)
++.....+..+++++|.++.++.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.++
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQR-----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS-----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhc-----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 444445567899999999999999998854 224679999999999999999999997 78888888
Q ss_pred cCcccc--ccccchHHHHHHHHH
Q psy16204 280 SSTLTS--KYRGESEKLVRLLFE 300 (577)
Q Consensus 280 ~s~l~~--k~~G~~e~~vr~lF~ 300 (577)
+..+.. .+.|..+..++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLN 108 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHhccCCccccHHHHHHHHHH
Confidence 876652 334444444444443
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=5.8e-15 Score=167.82 Aligned_cols=103 Identities=24% Similarity=0.202 Sum_probs=74.1
Q ss_pred CChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCCC
Q psy16204 184 VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGTG 259 (577)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGtG 259 (577)
+..+++...+...+|++...+...+...+.+.+...+++|+|++.+++.|...+... +..+..+ .++||+||||||
T Consensus 521 v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtG 600 (854)
T 1qvr_A 521 VTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVG 600 (854)
T ss_dssp ECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSS
T ss_pred cCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCC
Confidence 456777777777777654433222222222223334678999999999999988542 2333333 479999999999
Q ss_pred hHHHHHHHHHHh---CCeEEEEecCccccc
Q psy16204 260 KTMLAKAVATEC---GTTFFNVSSSTLTSK 286 (577)
Q Consensus 260 KT~LAkaLA~el---~~~fv~v~~s~l~~k 286 (577)
||++|++||..+ +.+|+.++|+++.+.
T Consensus 601 KT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 601 KTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred HHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 999999999999 789999999988654
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=1.8e-15 Score=135.77 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=54.8
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCc
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSST 282 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~ 282 (577)
....+..+++++|.+.+.+.+.+.+.. ....++||+||||||||++|+++++++ +.+++.+++..
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSR-----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS 88 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred HHHhccccchhhcchHHHHHHHHHHhC-----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence 344456789999999999999998844 223589999999999999999999997 77888888766
Q ss_pred cc
Q psy16204 283 LT 284 (577)
Q Consensus 283 l~ 284 (577)
+.
T Consensus 89 ~~ 90 (187)
T 2p65_A 89 LI 90 (187)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=4.1e-14 Score=141.12 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=62.6
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
..|..++.+.++++++|++.+++.|.+.+.. ...+..+|++||||||||++|+++|++++.+++++++++.
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~----~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK----GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT----TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc----CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 4688889999999999999999999999863 2344678899999999999999999999999999998764
No 48
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=7.4e-14 Score=128.29 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=50.7
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.+..++.+..+++++|.+.+++.|...+... ..+..+||+||+|+|||++|+++++.++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT----CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4556777888999999999999999998643 223579999999999999999999988643
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=2e-14 Score=153.33 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=64.5
Q ss_pred hhhhcCCCCCcccccCcHHHH---HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAK---AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak---~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k 286 (577)
++.....+..+++++|++.++ ..|...+.... ..++|||||||||||++|++||+.++.+|+.+++...
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~-----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC-----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCC-----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 566677788999999999999 78888885432 2689999999999999999999999999999998643
Q ss_pred cccchHHHHHHHHHH
Q psy16204 287 YRGESEKLVRLLFEM 301 (577)
Q Consensus 287 ~~G~~e~~vr~lF~~ 301 (577)
....++.+|..
T Consensus 87 ----~~~~ir~~~~~ 97 (447)
T 3pvs_A 87 ----GVKEIREAIER 97 (447)
T ss_dssp ----CHHHHHHHHHH
T ss_pred ----CHHHHHHHHHH
Confidence 23456666654
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=4.5e-13 Score=133.96 Aligned_cols=65 Identities=20% Similarity=0.040 Sum_probs=53.8
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCccc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSSTLT 284 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~l~ 284 (577)
..++++|.+..++.|...+...+. .....+++|+||||||||++|+++++.+ +.++++++|....
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR-GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS-SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 348899999999999998744222 2344689999999999999999999998 8899999998653
No 51
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.50 E-value=1.1e-12 Score=133.38 Aligned_cols=72 Identities=24% Similarity=0.203 Sum_probs=56.2
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+........+++++|++.+++.|...+.....+.+.+..++|+||||+|||+||++||.++++++...++..
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 344556678999999999999998887543222334467999999999999999999999999887776653
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=9.2e-14 Score=149.64 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=65.8
Q ss_pred HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcC-------CC-----ccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT-------IM-----PEFFKEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl-------~~-----~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
...|..++.+..+++|+|++.+++.|.+.+.... .. ...++++||+||||||||++|+++|++++.++
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3478889999999999999999999999986411 00 01347899999999999999999999999999
Q ss_pred EEEecCcccc
Q psy16204 276 FNVSSSTLTS 285 (577)
Q Consensus 276 v~v~~s~l~~ 285 (577)
++++++++..
T Consensus 106 i~in~s~~~~ 115 (516)
T 1sxj_A 106 LEQNASDVRS 115 (516)
T ss_dssp EEECTTSCCC
T ss_pred EEEeCCCcch
Confidence 9999998754
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=5.1e-13 Score=133.14 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=57.5
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC------CeEEEEecCc
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG------TTFFNVSSST 282 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~------~~fv~v~~s~ 282 (577)
.+|..++.+..|++|+|++++++.|...+... . +.++||+||||||||++|+++|+.++ ..++.+++++
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~----~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA----N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT----T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC----C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 46778888999999999999999999987542 1 23599999999999999999999865 3578888876
Q ss_pred c
Q psy16204 283 L 283 (577)
Q Consensus 283 l 283 (577)
.
T Consensus 100 ~ 100 (353)
T 1sxj_D 100 E 100 (353)
T ss_dssp C
T ss_pred c
Confidence 4
No 54
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.5e-12 Score=127.88 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=58.9
Q ss_pred HHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEec
Q psy16204 206 TLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSS 280 (577)
Q Consensus 206 ~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~ 280 (577)
..+.+|..++.+..|++++|++.+++.|...+... ...++||+||||||||++|+++|+.+. ..++.+++
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 33457888899999999999999999999988643 123599999999999999999999964 34777776
Q ss_pred Cc
Q psy16204 281 ST 282 (577)
Q Consensus 281 s~ 282 (577)
++
T Consensus 85 ~~ 86 (327)
T 1iqp_A 85 SD 86 (327)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.47 E-value=6.6e-13 Score=148.18 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=63.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCccc-
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLT- 284 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~- 284 (577)
....+++++|.+..++.+.+.+... ...++||+||||||||++|+++|..+ ++.++.+++..+.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~~-----~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~ 255 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C
T ss_pred hcCCCCCccCCHHHHHHHHHHHhcc-----CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc
Confidence 3457899999999999999988542 34689999999999999999999987 6678888877765
Q ss_pred -cccccchHHHHHHHHHH
Q psy16204 285 -SKYRGESEKLVRLLFEM 301 (577)
Q Consensus 285 -~k~~G~~e~~vr~lF~~ 301 (577)
.+|.|..+..++.+|..
T Consensus 256 ~~~~~g~~e~~l~~~~~~ 273 (758)
T 1r6b_X 256 GTKYRGDFEKRFKALLKQ 273 (758)
T ss_dssp CCCCSSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHH
Confidence 35777777777777654
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.46 E-value=2.3e-13 Score=133.13 Aligned_cols=69 Identities=22% Similarity=0.196 Sum_probs=56.1
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL 283 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l 283 (577)
+|..++.+..|++++|++.+++.|...+.. ... .++||+||||||||++|+++|+.+ +.+++.+++++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER----KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT----TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC----CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 567788889999999999999999887743 222 359999999999999999999996 345777777653
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.46 E-value=1.6e-13 Score=146.42 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=59.6
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS 279 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~ 279 (577)
++.+...+..+++|+|++..++.+.+.+..+ ...++||+||||||||++|++||..+ +.+|+.++
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~-----~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4445566678999999999999999988652 23589999999999999999999997 67888888
Q ss_pred cCccccccccchHHHHHHHHHH
Q psy16204 280 SSTLTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 280 ~s~l~~k~~G~~e~~vr~lF~~ 301 (577)
++ .+|.|+.+..++.+|..
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~ 262 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDE 262 (468)
T ss_dssp ------------CTTHHHHHHH
T ss_pred CC---ccccchHHHHHHHHHHH
Confidence 77 55666666666666654
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=3.4e-13 Score=131.08 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=47.2
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
.+|++++|++.+...+.+.+...... ..++||+||||||||++|++|++.+. .+|+.++|+.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~---~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL---DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS---CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC---CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 36889999999999888776542222 26899999999999999999999875 689999999763
No 59
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.44 E-value=3.4e-13 Score=136.22 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=49.7
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT 284 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~ 284 (577)
++|+|.+.+.+.+.+.+..-. ....+|||+||||||||++|++|+..+ +.+|+.++|+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a---~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA---PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC---STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCcEECCHHHHHHHHHHHHHh---CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 468999999998888875432 123589999999999999999999976 5799999999764
No 60
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.44 E-value=7.6e-13 Score=140.30 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=50.0
Q ss_pred CCCCccccc-C--cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204 216 PNVQWNKVA-G--LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL 283 (577)
Q Consensus 216 ~~v~~~dIi-G--~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l 283 (577)
+..+|++++ | ...+...+..+...|- . +.++|||||||||||+||++|++++ +.+++++++.++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~---~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHPG---R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHSTT---S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCCC---C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 345788887 5 4556666666665542 2 6789999999999999999999998 888999988754
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.43 E-value=2.8e-12 Score=127.88 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=44.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..++..|++|+|++.+++.+...+..+ ...++||+||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~-----~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP-----GIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG-----GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC-----CCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 345678999999999988876665433 1246999999999999999999999873
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=6.2e-12 Score=126.36 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=51.3
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL 283 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l 283 (577)
.++++|.+..++.|...+...+.... .+..++|+||||||||+++++++..+ +..+++++|...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 47899999999999998854222111 12379999999999999999999998 678999998765
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.42 E-value=3.5e-12 Score=128.04 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=50.6
Q ss_pred hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
+..++.+..|++++|++.+++.|...+... .....+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~----~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT----CCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455677889999999999999999998542 334578999999999999999999998753
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.42 E-value=6.1e-13 Score=151.19 Aligned_cols=234 Identities=24% Similarity=0.241 Sum_probs=173.0
Q ss_pred CCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcc---cCCC
Q psy16204 321 NGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC---QSHE 397 (577)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 397 (577)
...+.+++|....+.++.+.+..+-.++..+..++..++.+++.|+++|+||+..+..........+...... ..+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 4567778888888888888887777777778888999999999999999999977443332222222211111 1336
Q ss_pred CcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhH
Q psy16204 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLL 477 (577)
Q Consensus 398 ~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~ 477 (577)
++....+..+|..+....|+++||||||.++..++.. ..+..+++.+.|+..+++.... .++++|+|||.++.|+
T Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~----~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSID 354 (806)
T ss_dssp THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT----SCCEEEEECSCTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc----ccEEEecccCCchhcC
Confidence 7778888999999999999999999999999977543 3456678999999999988753 6799999999999887
Q ss_pred HHhhc--Cc-------------------------ccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhH
Q psy16204 478 TLCLE--GV-------------------------VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ 530 (577)
Q Consensus 478 ~allr--r~-------------------------~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~ 530 (577)
+++.+ +| .+..++++..++..+.||+++|+..++++|++.++++.........
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 77776 32 2223457889999999999999999999999999988653222111
Q ss_pred HhhhhccCCCCCCCHHHHHHHHHHhCCCC
Q psy16204 531 IKEIKQEDIDLPVTEKDFREAIARCRKSV 559 (577)
Q Consensus 531 ~~~~~~~~~~~~It~~df~~Al~~~~psv 559 (577)
............++.+||..++....|+.
T Consensus 435 ~~~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHCCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred hccchhhhhhhhhhhhhhhccccccCchh
Confidence 10001111245788999999999987753
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.42 E-value=7e-13 Score=132.74 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=52.2
Q ss_pred CCCCccccc---CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 216 PNVQWNKVA---GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 216 ~~v~~~dIi---G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+..+|++++ +...+...+..++..|- ..+.++|||||||||||+||+++++.+ +.+++++++.++
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~---~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLG---SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTT---TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcC---CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 445788887 45667777777776652 235689999999999999999999999 899999998765
No 66
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=2.8e-13 Score=121.70 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=47.2
Q ss_pred cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS 285 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~ 285 (577)
+|+|.+.+.+.+.+.+..-. .....|||+||||||||++|++|+..+ +.+|+ ++|+.+.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 67899999998888774321 122579999999999999999999987 67999 99987644
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.41 E-value=2.2e-13 Score=136.52 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=52.9
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
....+..+++|+|++++++.+..++..+ .++||+||||||||++|+++|+.++.+|+.+.+.
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 3333445688999999999998888542 5899999999999999999999999999999885
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.41 E-value=1e-12 Score=149.37 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=64.8
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS 279 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~ 279 (577)
++.+...+..+++++|.++.++.+.+.+... ...++||+||||||||++|+++|..+ +.+++.++
T Consensus 159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~-----~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCS-----SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred hHHHHHhcCCCcccCCcHHHHHHHHHHHhcC-----CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4444555678999999999999999988542 23579999999999999999999998 88999999
Q ss_pred cCccc--cccccchHHHHHHHHHH
Q psy16204 280 SSTLT--SKYRGESEKLVRLLFEM 301 (577)
Q Consensus 280 ~s~l~--~k~~G~~e~~vr~lF~~ 301 (577)
++.+. .+|.|+.+..++.+|..
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~ 257 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQE 257 (854)
T ss_dssp C-----------CHHHHHHHHHHH
T ss_pred hHHhhccCccchHHHHHHHHHHHH
Confidence 99886 46778888777777765
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.41 E-value=1.7e-12 Score=121.19 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=50.2
Q ss_pred CCCcccccC---cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 217 NVQWNKVAG---LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 217 ~v~~~dIiG---~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
...+++++| .+.+.+.|...+..+ ...++||+||||||||++|+++++++. .+++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 367888886 357888888877653 236899999999999999999999875 678888887653
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=5e-12 Score=123.91 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=56.1
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCc
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSST 282 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~ 282 (577)
+|..++.+..+++++|++.+++.|...+... ..+ ++||+||+|+|||++|+++++.+ +..++++++++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~----~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG----NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC----CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC----CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 5667788889999999999999999998642 222 49999999999999999999996 34577777765
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=2.1e-11 Score=121.63 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=52.8
Q ss_pred CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh------CCeEEEEecCcc
Q psy16204 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC------GTTFFNVSSSTL 283 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el------~~~fv~v~~s~l 283 (577)
..++++|.+..++.|.+.+...+. ......++|+||+|||||+|++++++.+ +.++++++|...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 458899999999999998754222 2334689999999999999999999998 899999998654
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.4e-11 Score=124.09 Aligned_cols=62 Identities=18% Similarity=0.039 Sum_probs=52.5
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----------CCeEEEEecCcc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----------GTTFFNVSSSTL 283 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----------~~~fv~v~~s~l 283 (577)
++++|.++.++.|...+...+. ...+.+++|+||||||||++|+++++++ +.++++++|...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 7899999999999988754322 2334689999999999999999999998 999999999764
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.36 E-value=1.5e-13 Score=123.38 Aligned_cols=59 Identities=7% Similarity=-0.006 Sum_probs=46.6
Q ss_pred cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
+++|.+.+.+.+.+.+..... ...+|||+||||||||++|++|+..++ +|+.++|+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~ 63 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYL 63 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHH
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCC
Confidence 578999999888888754221 225799999999999999999999988 99999998764
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=8e-11 Score=118.99 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=55.8
Q ss_pred hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCc
Q psy16204 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSST 282 (577)
Q Consensus 209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~ 282 (577)
.+|..++.+..+++++|++.+++.|...+... +++ ++||+||||||||++|+++|+.+.. .+..+++++
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g----~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEG----KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT----CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcC----CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 47888899999999999999999999988642 233 4999999999999999999998643 355555543
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.8e-12 Score=132.09 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=49.4
Q ss_pred ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCccccc
Q psy16204 223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLTSK 286 (577)
Q Consensus 223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~~k 286 (577)
+.|.++..+.|..++...+. ...+.+++|+||||||||++++.+++++ ...+++++|..+.+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~-~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM-SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred cCCHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 67888888888877754332 2345789999999999999999999998 457899999877553
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.32 E-value=1.3e-12 Score=146.22 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=59.8
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS 279 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~ 279 (577)
++.+......+++|+|++..++.|.+.+..+ ...++||+||||||||++|++||+.+ +++++.++
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~-----~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCC-----CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 3444556667899999999999999988652 23579999999999999999999997 77787777
Q ss_pred cCccccccccchHHHHHHHHHH
Q psy16204 280 SSTLTSKYRGESEKLVRLLFEM 301 (577)
Q Consensus 280 ~s~l~~k~~G~~e~~vr~lF~~ 301 (577)
+ ..+|.|+.+..++.+|..
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~ 262 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDE 262 (758)
T ss_dssp ------------CTTHHHHHHH
T ss_pred c---cccccchHHHHHHHHHHH
Confidence 7 445677777777766655
No 77
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.30 E-value=2.9e-12 Score=155.22 Aligned_cols=160 Identities=13% Similarity=0.045 Sum_probs=101.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHHCcCCC--------------cc--------------------ccce--eEEecCCC
Q psy16204 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIM--------------PE--------------------FFKE--ALERHSHG 257 (577)
Q Consensus 214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~--------------~~--------------------~~k~--ILL~GPpG 257 (577)
....+.|.+|.|++++|+.+.+++.+|+.+ .. ++++ +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 344589999999999999999999888722 11 2344 99999999
Q ss_pred CChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHH
Q psy16204 258 TGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQI 334 (577)
Q Consensus 258 tGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (577)
||||+||++++.+. |.+.+.|+..+....+. ..-|.
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~-------~~~~G---------------------------------- 1131 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLG---------------------------------- 1131 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-------HHHTT----------------------------------
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHH-------HHHhC----------------------------------
Confidence 99999999999887 45667777765442111 00000
Q ss_pred HHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCc----chhhhhhhHHH
Q psy16204 335 LQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGH----SGRINKNSLFQ 410 (577)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~ 410 (577)
| ....++++ .++.++.++..
T Consensus 1132 ----------------------------------------------------~----d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1132 ----------------------------------------------------V----DIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp ----------------------------------------------------C----CGGGCEEECCSSHHHHHHHHHHH
T ss_pred ----------------------------------------------------C----CHHHHhhccccchHHHHHHHHHH
Confidence 0 00111222 34445555555
Q ss_pred HHhcCCeEEEEccccccccCC---CCCC--hhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchh
Q psy16204 411 ARCYAPSTIFIDEVDSLCSMR---GSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ 475 (577)
Q Consensus 411 a~~~~p~IIfIDEID~l~~~r---~~~~--~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~ 475 (577)
|+...||+||+||||.|++.+ |..+ ......|+++++|..|++.... ++|+|| +||+..+
T Consensus 1156 ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~----~~v~v~-~~n~~~~ 1220 (1706)
T 3cmw_A 1156 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLI-FINQIRM 1220 (1706)
T ss_dssp HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH----TTCEEE-EEECEEE
T ss_pred HHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhcc----CCeEEE-Eeccccc
Confidence 899999999999999999983 2222 2356778999999999986543 456666 7787755
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=9.4e-13 Score=145.09 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=41.0
Q ss_pred ccccCcHHHHHHHHHHHHCcCCC--c-cc---cceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIM--P-EF---FKEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~--~-~~---~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..|+|++.+|..|.-++...... + .. ..++||+||||||||+||+++|+.++..++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 57899999988775554332100 0 00 1279999999999999999999998766543
No 79
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=4.9e-11 Score=119.61 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=48.1
Q ss_pred hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.|..++.+..+++++|++.+++.|...+. .....+. +||+||+|+|||++++++|.++
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~---~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD---QPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT---CTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh---hCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999999999888761 2223334 9999999999999999999975
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.25 E-value=2.4e-11 Score=131.86 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=45.1
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecC
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSS 281 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s 281 (577)
..|+|++++++.+..++... .++||+||||||||+||++||..++ .+|..+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~ 77 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 77 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT
T ss_pred hhhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 56899999999888887543 4899999999999999999999885 466666664
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.25 E-value=4.9e-11 Score=130.95 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=47.1
Q ss_pred hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..+++..+++++|++.+++.|..++... ..+||+||||||||+||++||..+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccccceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4567778999999999999999988543 48999999999999999999998853
No 82
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.19 E-value=3.7e-11 Score=101.76 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=61.3
Q ss_pred hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204 475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554 (577)
Q Consensus 475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~ 554 (577)
.|++.+++..++..++|++.||+.|+||||+||.+||++|++.++|+.. ..|+.+||.+|+.+
T Consensus 8 ~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 8 NIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHHHHHHHH
Confidence 4888899999998899999999999999999999999999999999843 46999999999999
Q ss_pred hCCCCCHH-HHHHHHHHH
Q psy16204 555 CRKSVTAH-DLSKYDSWM 571 (577)
Q Consensus 555 ~~psv~~~-~~~~~~~~~ 571 (577)
+.+++... ...+|..|.
T Consensus 71 v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 71 VISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HTC---------------
T ss_pred HhcCcccccchhHHhccC
Confidence 99988654 478888884
No 83
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.18 E-value=1.2e-11 Score=102.77 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=60.5
Q ss_pred hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204 475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554 (577)
Q Consensus 475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~ 554 (577)
.|++.+++.+++..++|+..||+.|+||||+||.++|++|++.++++. ...|+.+||..|+++
T Consensus 8 ~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDFEKAYKT 70 (83)
T ss_dssp HHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHH
Confidence 478888898888889999999999999999999999999999998874 257999999999999
Q ss_pred hCCCCCHHHHHHHH
Q psy16204 555 CRKSVTAHDLSKYD 568 (577)
Q Consensus 555 ~~psv~~~~~~~~~ 568 (577)
++|+++ +++..|+
T Consensus 71 ~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 71 VIKKDE-QEHEFYK 83 (83)
T ss_dssp HCC-----------
T ss_pred HccCch-HHHHhcC
Confidence 999999 8888774
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.11 E-value=4.7e-10 Score=116.95 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=48.1
Q ss_pred cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT 284 (577)
Q Consensus 220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~ 284 (577)
+..++|.....+.+.+.+.. +... -..||++|++||||+++|++|+.... .+|+.++|+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~-~a~~--~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK-ISCA--ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 200 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH-HTTC--CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred chhhhhccHHhhHHHHHHHH-hcCC--CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence 45688888777777776643 2222 23689999999999999999998875 699999999764
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.08 E-value=2.2e-09 Score=109.16 Aligned_cols=46 Identities=15% Similarity=-0.030 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.++++.+.|...+.. ..++.++||+||+|+|||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~----~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA----GRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp GGHHHHHHHHHHHHT----TCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHc----CCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 467778888887753 3455689999999999999999999998764
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.07 E-value=4e-09 Score=106.95 Aligned_cols=64 Identities=14% Similarity=-0.096 Sum_probs=49.2
Q ss_pred CcccccCcHHHHHHHHHHH-HCcCCCc-cccceeEE--ecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 219 QWNKVAGLTEAKAILQEAM-VLPTIMP-EFFKEALE--RHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 219 ~~~dIiG~~~ak~~L~e~l-~~pl~~~-~~~k~ILL--~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
..++++|.+..++.|.+.+ ....... .....+++ +||+|+|||+|++.+++.+ +..+++++|..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 3478999999999998887 4322110 23457899 9999999999999999887 56788888754
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=1.3e-09 Score=110.75 Aligned_cols=52 Identities=6% Similarity=0.005 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC------CeEEEEecC
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG------TTFFNVSSS 281 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~------~~fv~v~~s 281 (577)
|++++.+.|..++...- ...+|||||||+|||++|+++|+.|+ ..|+.++++
T Consensus 1 g~~~~~~~L~~~i~~~~-----~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-----GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp ---CHHHHHHHHHHTCS-----SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred ChHHHHHHHHHHHHCCC-----CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 78889999999986542 35899999999999999999999752 356666654
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=1e-09 Score=100.69 Aligned_cols=68 Identities=22% Similarity=0.075 Sum_probs=47.2
Q ss_pred cCCCCCcccccC----cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204 214 NNPNVQWNKVAG----LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL 283 (577)
Q Consensus 214 ~~~~v~~~dIiG----~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l 283 (577)
++...+|+++++ +..+++.+.+++..-. .....+++|+||+|||||+|+++++..+ |..++++++.++
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN--PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC--GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc--ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 345567888875 5666666766664311 1123679999999999999999999887 556666665443
No 89
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.97 E-value=1.4e-10 Score=96.51 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=51.6
Q ss_pred hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204 475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554 (577)
Q Consensus 475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~ 554 (577)
.|++.+++.+++..++|+..||+.|+||||+||.++|++|++.++++.. ..|+.+||..|+.+
T Consensus 5 ~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 5 LIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEEAYAT 67 (82)
T ss_dssp ---------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHHHHHH
Confidence 3667778888887889999999999999999999999999999999842 46999999999999
Q ss_pred h-CCCCCHHHHHHH
Q psy16204 555 C-RKSVTAHDLSKY 567 (577)
Q Consensus 555 ~-~psv~~~~~~~~ 567 (577)
+ .++++..++..|
T Consensus 68 v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 68 QVKTDNTVDKFDFY 81 (82)
T ss_dssp TCC-----------
T ss_pred HHcCcCChHHHHhh
Confidence 8 588888888766
No 90
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.94 E-value=8.4e-10 Score=93.43 Aligned_cols=66 Identities=21% Similarity=0.501 Sum_probs=60.9
Q ss_pred hHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204 476 LLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555 (577)
Q Consensus 476 L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~ 555 (577)
|++.+++.+++..++|+..||+.|+||||+||.+||++|++.++|+.. ..|+.+||.+|+.++
T Consensus 19 IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~-----------------~~I~~~df~~Al~~v 81 (86)
T 2krk_A 19 ILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------CCCCHHHHHHHHHHH
Confidence 888999999888899999999999999999999999999999998852 479999999999999
Q ss_pred CCC
Q psy16204 556 RKS 558 (577)
Q Consensus 556 ~ps 558 (577)
+|.
T Consensus 82 ~p~ 84 (86)
T 2krk_A 82 MQK 84 (86)
T ss_dssp HCC
T ss_pred ccC
Confidence 875
No 91
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.83 E-value=3.7e-09 Score=86.79 Aligned_cols=67 Identities=21% Similarity=0.498 Sum_probs=59.5
Q ss_pred hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204 475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554 (577)
Q Consensus 475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~ 554 (577)
.|++.+++.+.+..++|+..||+.|+||||+||.++|++|++.++++.. ..|+.+||.+|+.+
T Consensus 10 ~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCCCHHHHHHHHHH
Confidence 3788888888888899999999999999999999999999999998842 47999999999999
Q ss_pred hCCC
Q psy16204 555 CRKS 558 (577)
Q Consensus 555 ~~ps 558 (577)
+..+
T Consensus 73 v~~~ 76 (78)
T 3kw6_A 73 VMQK 76 (78)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 7653
No 92
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.79 E-value=3.2e-08 Score=102.79 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=47.3
Q ss_pred ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcccc
Q psy16204 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTLTS 285 (577)
Q Consensus 221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l~~ 285 (577)
..++|.......+.+.+..-. .....+|++|++||||+.+|++++...+.. |+.++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a---~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA---KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH---TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred ccccccchHHHHHHhhhhhhh---ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 468888887777776653211 112369999999999999999999988643 99999998744
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.73 E-value=1.2e-08 Score=94.70 Aligned_cols=66 Identities=21% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCCcccccCcH----HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 217 NVQWNKVAGLT----EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 217 ~v~~~dIiG~~----~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
..+++++++.. .+++.+.+++...... ..+.+++|+||||||||+||++++.++ +.+++.+++.++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35677887643 3555566665432111 112689999999999999999999988 577888877643
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.53 E-value=5.6e-08 Score=101.01 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC--eEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT--TFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v 278 (577)
..+||+||||||||+||.++|.+.+. .|+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34799999999999999999987554 35554
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.52 E-value=1.8e-07 Score=117.94 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.3
Q ss_pred ceeEEecCCCCChHHHHH-HHHHHhCCeEEEEecCcccc
Q psy16204 248 KEALERHSHGTGKTMLAK-AVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk-aLA~el~~~fv~v~~s~l~~ 285 (577)
+++||+||||||||++|+ .+++..+..++.++++..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts 1306 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1306 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC
Confidence 689999999999999995 55555578889999887654
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.48 E-value=9.1e-08 Score=96.94 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=43.6
Q ss_pred CCcccccCc----HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCcc
Q psy16204 218 VQWNKVAGL----TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTL 283 (577)
Q Consensus 218 v~~~dIiG~----~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l 283 (577)
.+++++.+. ..+.+.+.+++..... ....+++||||||||||+||++||.++. .+++++.+.++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 456666652 3455555566643211 1246899999999999999999998764 67777776543
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.41 E-value=2.8e-07 Score=84.06 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=30.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
..++|+||+|+|||+|+++++..+ |..++++++.++
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 578999999999999999999987 666777776654
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.32 E-value=7.9e-06 Score=80.39 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
.+......++|.+...+.|.+.+... ..++++||+|+|||+|++.+++..+ ++++++..
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~-------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY-------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC-------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 34456678999999999999988531 5799999999999999999999986 67777654
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.32 E-value=1.1e-05 Score=79.42 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
.+......++|.+...+.|.+ +.. ..++++||+|+|||+|++.++++++..++++++...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 344566789999999999988 632 489999999999999999999999888888888653
No 100
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.19 E-value=1.9e-06 Score=82.84 Aligned_cols=61 Identities=20% Similarity=0.113 Sum_probs=39.7
Q ss_pred cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc
Q psy16204 414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI 486 (577)
Q Consensus 414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i 486 (577)
..++||+|||++.+.+.+..+.+. ..+|..++.-. ...+-||.+|+.+..|+..+..++..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~-------~rll~~l~~~r-----~~~~~iil~tq~~~~l~~~lr~ri~~ 146 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI-------PENVQWLNTHR-----HQGIDIFVLTQGPKLLDQNLRTLVRK 146 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC-------CHHHHGGGGTT-----TTTCEEEEEESCGGGBCHHHHTTEEE
T ss_pred cCceEEEEEChhhhccCccccchh-------HHHHHHHHhcC-----cCCeEEEEECCCHHHHhHHHHHHhhe
Confidence 347899999999997655322221 12555554322 23356677788899999998887654
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.17 E-value=4.6e-06 Score=90.80 Aligned_cols=50 Identities=10% Similarity=-0.097 Sum_probs=37.8
Q ss_pred ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHH-HHHhCC
Q psy16204 223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAV-ATECGT 273 (577)
Q Consensus 223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaL-A~el~~ 273 (577)
|.|++.+|..|.-++..+-....---+|||.|+||| ||+||+++ ++.+..
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR 265 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR 265 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC
Confidence 899999999888888654322111126999999999 99999999 665543
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.12 E-value=5.4e-06 Score=102.42 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=36.5
Q ss_pred hhhhhhHHHHHhcCCeEEEEccccccccCC---CCCCh-hH-HHHHHHHHHHHHHhCCC
Q psy16204 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMR---GSDSE-HE-ASRRFKAELLIQMDGLN 455 (577)
Q Consensus 402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r---~~~~~-~~-~~~~v~~~LL~~mD~~~ 455 (577)
..++.+.+.++...|++|||||++.+.+.+ +..++ +. ...++++++|..|.+..
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~ 1550 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1550 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 444555556788999999999999888742 22121 11 24578888888887655
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.06 E-value=2.2e-05 Score=99.42 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 227 TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 227 ~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+.....|..++... .++++.||+|||||++++.+|+.+|.+++.++|++-++
T Consensus 632 dr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld 683 (2695)
T 4akg_A 632 LIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD 683 (2695)
T ss_dssp HHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC
T ss_pred HHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC
Confidence 34444455555332 57899999999999999999999999999999987654
No 104
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.93 E-value=7.2e-06 Score=80.55 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 228 EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 228 ~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.....|+..+.. .|+ .+++|||||||||||++|.+||+.+...
T Consensus 43 ~f~~~l~~~~~~---iPk-kn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 43 TFLGALKSFLKG---TPK-KNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp HHHHHHHHHHHT---CTT-CSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHhc---CCc-ccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345555555532 122 2579999999999999999999997654
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=2e-05 Score=82.88 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..++|+||+|+|||+|+++|+..++..++.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 468999999999999999999988776554
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.81 E-value=0.00025 Score=65.65 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=26.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
..++|+||+|+|||+|++.++..+ +..+++++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 347899999999999999999654 4566666654
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.72 E-value=0.00032 Score=65.66 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
.+.|.||+|+|||+|++.|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 468999999999999999999987544
No 108
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.65 E-value=5.2e-06 Score=89.24 Aligned_cols=119 Identities=14% Similarity=0.038 Sum_probs=45.4
Q ss_pred CCCccccccccCCCCCCcchhhhhhhhcccCCCCcc----cCCCC-cchhhhhhhHHHHHhcCCeEEEEccccccccCCC
Q psy16204 358 SGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC----QSHEG-HSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG 432 (577)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~ 432 (577)
++.+++.++++|+||+..+....-.-..++...... ..++| +...+++.++..+.... ++||++.+...
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~-- 122 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRAR-- 122 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhcc--
Confidence 578899999999999998554444334444333211 13677 57888888888887654 58999887542
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEe-cCCchhhHHHhhcCccccccc
Q psy16204 433 SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA-TNHPYQLLTLCLEGVVIDVNL 490 (577)
Q Consensus 433 ~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIat-TN~p~~L~~allrr~~i~~~v 490 (577)
......+++++.||..||++.+. ..| +++ ||+|+.|+++++++.+++..|
T Consensus 123 --~~~~~e~rvl~~LL~~~dg~~~~----~~v--~a~~TN~~~~ld~aL~rggr~D~~i 173 (444)
T 1g41_A 123 --AEDVAEERILDALLPPAKNQWGE----VEN--HDSHSSTRQAFRKKLREGQLDDKEI 173 (444)
T ss_dssp -----------------------------------------------------------
T ss_pred --chhhHHHHHHHHHHHHhhccccc----ccc--ccccccCHHHHHHHHHcCCCcceEE
Confidence 23455679999999999998753 223 555 999999999999988777654
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.61 E-value=0.00055 Score=63.32 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=29.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
-++|+||||+|||++++.+|...+.+.++++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4799999999999999999986677888888754
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=3.9e-05 Score=69.31 Aligned_cols=36 Identities=8% Similarity=0.213 Sum_probs=31.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
.-|+|.|+||+|||++|++||+.++.+|+.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 358999999999999999999999999888776543
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.44 E-value=0.00068 Score=87.18 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=33.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~ 285 (577)
+..+.||+|||||+++|.+|+.+|.+++.++|++-++
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d 642 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD 642 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 5689999999999999999999999999999987544
No 112
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=6.7e-05 Score=68.32 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=28.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
+.|+|.|++|||||++|+.||+.++.+|+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5789999999999999999999999988754
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.41 E-value=0.011 Score=63.35 Aligned_cols=49 Identities=12% Similarity=-0.044 Sum_probs=39.5
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHH
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.....++|.+..++.|.+.+... ..-.+-|+++|++|+|||+||+.++.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL---KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS---TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCeecccHHHHHHHHHHHhcc---cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 45678999999999999998532 12235689999999999999999874
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=0.00088 Score=62.91 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=28.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
-++|+||+|+|||+|++.++..+ +...++++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 47999999999999999999852 45677777754
No 115
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.00012 Score=66.53 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=27.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
+.|+|.|+||+|||++++.||+.++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4689999999999999999999999887654
No 116
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.31 E-value=0.00025 Score=69.03 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=37.8
Q ss_pred HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 231 AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 231 ~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
+.+...+.........+..++|.|+||+|||++|+.|+..++..++.++...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 33333333333333344678999999999999999999999877777777655
No 117
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=0.00014 Score=64.66 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=27.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
-|+|.|++|+|||++|+.|++.++.+|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876544
No 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.30 E-value=0.00018 Score=92.36 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=29.6
Q ss_pred ceeEEecCCCCChHHHHHH-HHHHhCCeEEEEecCcccc
Q psy16204 248 KEALERHSHGTGKTMLAKA-VATECGTTFFNVSSSTLTS 285 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAka-LA~el~~~fv~v~~s~l~~ 285 (577)
+.|||+||||||||++++. +++..+.+++.++++..++
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt 1343 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC
Confidence 5799999999999987765 4444467788899987654
No 119
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.29 E-value=0.00062 Score=63.29 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~ 282 (577)
-+.|.||+|+|||+|++.|+..+. ...++++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 478999999999999999998543 2366666543
No 120
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.25 E-value=0.0044 Score=70.92 Aligned_cols=52 Identities=12% Similarity=-0.066 Sum_probs=41.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.+.....++|.++.++.|.+.+...- .-.+-|.|+|+.|+|||+||+.++..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 33456679999999999999985431 22356889999999999999998865
No 121
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.00018 Score=66.82 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=29.2
Q ss_pred ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 244 PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
+..+..|+|.|+||+|||++|+.|++.++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 33445689999999999999999999999886544
No 122
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.23 E-value=0.00022 Score=64.75 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=26.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|+|.|+||+|||++|+.||+.++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.23 E-value=0.0023 Score=60.22 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=36.9
Q ss_pred chhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh
Q psy16204 400 SGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL 476 (577)
Q Consensus 400 ~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L 476 (577)
.+.........+....|.+|+|||.-.+..... +....+..+..|+..+.... +.||.+|......
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~~~~~~~l~~l~~~l~~~g--------~tii~vtH~~~~~ 185 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILLEMG--------VTTILTTEAPDPQ 185 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHHHHC--------CEEEEEECCC---
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CHHHHHHHHHHHHHHHHHCC--------CeEEEEECCCCCC
Confidence 344455555556678999999999987764221 12334455666666664322 3455566554443
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.00016 Score=67.42 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=28.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
+.|+|.|++|||||+++++||+.++.+|+..+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 46899999999999999999999999886543
No 125
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.007 Score=56.70 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=27.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
-++++||||+|||++|..+|..+ +...++++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 47999999999999998887653 56777777653
No 126
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.21 E-value=0.0013 Score=68.81 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
.-++|+||||+|||+||..++..+ +..+++++....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 357999999999999999999875 567778877654
No 127
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.20 E-value=0.00017 Score=65.75 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=26.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|+|.|+||+|||++|+.||+.+|++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48899999999999999999999998764
No 128
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.20 E-value=0.0012 Score=68.97 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=29.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++|+|+||+|||+||..+|..+ +.++++++...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 458999999999999999988765 56788888764
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00044 Score=69.26 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=31.8
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT 284 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~ 284 (577)
.+.-++|.||||+|||++|+.|+++++..++.|++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 345689999999999999999999986566777765543
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.17 E-value=0.00029 Score=63.40 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=28.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
..|+|.|++|||||++|+.||+.+|.+|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5789999999999999999999999988653
No 131
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.16 E-value=0.025 Score=60.78 Aligned_cols=37 Identities=27% Similarity=0.130 Sum_probs=29.3
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
+.-|++.|++|+|||+++..||..+ |..+..+.+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4568999999999999999999776 566666766543
No 132
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.15 E-value=0.0002 Score=62.92 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
-|+|.|+||+|||++|+.| +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8899887654
No 133
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.10 E-value=0.00033 Score=64.77 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=30.6
Q ss_pred cCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 240 PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 240 pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
|...+..+.-|+|.|++|+|||++|+.|++.++.+++..
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 333344446789999999999999999999999866543
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.10 E-value=0.00034 Score=63.60 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=27.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.-|+|.|+||+|||++++.|++.++.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 458999999999999999999999987765
No 135
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.10 E-value=0.00037 Score=62.56 Aligned_cols=30 Identities=17% Similarity=0.443 Sum_probs=26.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..|.|.||+|+|||++++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 358899999999999999999999986653
No 136
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.09 E-value=0.00038 Score=62.28 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=26.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|+|.|++|+|||++|+.||+.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999988764
No 137
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.07 E-value=0.01 Score=63.53 Aligned_cols=36 Identities=22% Similarity=0.061 Sum_probs=28.3
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
+.-++|.|++|+|||+++..||..+ |..+..+++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3568899999999999999999766 56666666653
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00046 Score=62.38 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=26.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.-|+|.|+||+|||++|+.|++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999987643
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.03 E-value=0.002 Score=68.19 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=26.1
Q ss_pred eEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~ 282 (577)
++|+||||+|||+|++.++-.+. ...++++..+
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 78999999999999998875542 3477777754
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.03 E-value=0.00032 Score=63.94 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.-|+|.|+||+|||++|+.||+.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4689999999999999999999999876544
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.03 E-value=0.0005 Score=65.76 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=28.3
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
....|+|.|+||+|||++|+.||+.++.+++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345699999999999999999999999876543
No 142
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.02 E-value=0.00038 Score=68.22 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=28.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
-++|.||||+|||+||+.||+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876655
No 143
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.02 E-value=0.001 Score=67.30 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
.-++|+||||+|||++|..+|..+ +...++++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 358999999999999999999876 56788888764
No 144
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.01 E-value=0.00046 Score=62.67 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=25.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|+|.|+||+|||++++.||+.++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 58899999999999999999999976543
No 145
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.00 E-value=0.0099 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-++|+||+|+|||+|++.++..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998654
No 146
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.00 E-value=0.00035 Score=63.80 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.-|+|.|+||+|||++|+.|++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3589999999999999999999999765443
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.99 E-value=0.00033 Score=64.62 Aligned_cols=31 Identities=35% Similarity=0.441 Sum_probs=27.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHH-hCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE-CGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e-l~~~fv~v 278 (577)
..|+|+|+||||||++++.||+. +|++++.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 46899999999999999999999 78776543
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.98 E-value=0.00072 Score=83.99 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=31.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcccc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTS 285 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~ 285 (577)
-++|+|+||+|||+||..+|..+. .++++++..+...
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ 773 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 773 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHH
Confidence 379999999999999999998874 4688888876544
No 149
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.97 E-value=0.0041 Score=58.31 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=33.1
Q ss_pred hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455 (577)
Q Consensus 401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~ 455 (577)
..++......+....+.+++||.+..+..... ......++...|.......+
T Consensus 121 ~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~---~~~~~~~~~~~L~~~a~~~~ 172 (251)
T 2zts_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILLEMG 172 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcHHHHhhhcc---ChHHHHHHHHHHHHHHHHcC
Confidence 34455555567788899999999998865322 23344556666666555443
No 150
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.96 E-value=0.0041 Score=64.32 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=28.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++|+||||+|||+||..++..+ +..+++++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 348999999999999999998765 56777777754
No 151
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00046 Score=62.35 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=22.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-|+|.|+||+|||++++.|++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987
No 152
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00039 Score=62.82 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=22.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
.-|+|.|+||+|||++|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999876
No 153
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.93 E-value=0.00063 Score=61.40 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=27.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.-|+|.|+||+|||++|+.|++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999999776543
No 154
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.92 E-value=0.009 Score=58.79 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s 281 (577)
-++|.||||+|||+|++.||..+ |.++++++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 47899999999999999998765 4466666553
No 155
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.92 E-value=0.0006 Score=63.24 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=27.2
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
+.-|+|.|++|+|||++|+.|++.+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3568999999999999999999999877654
No 156
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.92 E-value=0.00064 Score=60.69 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|+|.|++|+|||++|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999988764
No 157
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.91 E-value=0.00045 Score=64.48 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=26.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.|+|.|+||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998876543
No 158
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.90 E-value=0.00042 Score=72.82 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=50.6
Q ss_pred cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEE------------------EecCcccc
Q psy16204 224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFN------------------VSSSTLTS 285 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~------------------v~~s~l~~ 285 (577)
+..+...+.+...+..-+...+ ...++|+|++|+|||+++++||..++.+|+. ++....++
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~-~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~ 80 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNY-RVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLK 80 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCS-CEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSE
T ss_pred ccHHHHHHHHHHHHHHHhccCC-eeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHH
Confidence 3455666666666654443332 2478999999999999999999999988855 55555555
Q ss_pred ccccchHHHHHHHHHH
Q psy16204 286 KYRGESEKLVRLLFEM 301 (577)
Q Consensus 286 k~~G~~e~~vr~lF~~ 301 (577)
...| ..+.++|+.
T Consensus 81 ~~~g---~~i~~if~~ 93 (359)
T 2ga8_A 81 TLQP---NKVAEMIEN 93 (359)
T ss_dssp ECCH---HHHHHHHHT
T ss_pred HHhC---ccHHHHHHH
Confidence 5444 456667764
No 159
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.90 E-value=0.011 Score=59.61 Aligned_cols=33 Identities=21% Similarity=0.018 Sum_probs=27.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
-+++.|+||+|||++|..+|..+ +.++++++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 48999999999999999998664 3577777765
No 160
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.90 E-value=0.00043 Score=64.76 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=26.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.|+|.|+||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998776543
No 161
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.90 E-value=0.00042 Score=61.98 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH-HhCCe
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT-ECGTT 274 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~-el~~~ 274 (577)
.-|+|.|+||+|||++|+.|++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 3589999999999999999999 45543
No 162
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.90 E-value=0.0043 Score=62.39 Aligned_cols=26 Identities=12% Similarity=-0.180 Sum_probs=23.0
Q ss_pred ccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 246 FFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 246 ~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+...+|||||+|.||++.++.|++.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~ 42 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA 42 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH
Confidence 44689999999999999999999875
No 163
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.89 E-value=0.0007 Score=63.77 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=27.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
..|+|.|+||+|||++|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999999876543
No 164
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.88 E-value=0.00046 Score=65.47 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=27.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.-|+|.|+||+|||++|+.||+.++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4589999999999999999999999876543
No 165
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.86 E-value=0.00066 Score=68.60 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=23.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+++|||||||||||++|++||..++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 57999999999999999999998654
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.84 E-value=0.00046 Score=62.93 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=30.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
..++|.||+|+|||++++.|+...+...+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 357899999999999999999987777777776543
No 167
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.83 E-value=0.011 Score=63.18 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=27.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s 281 (577)
-+++.|+||+|||++|-.+|..+ |.++++++..
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 37999999999999999998775 4567777764
No 168
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.83 E-value=0.0037 Score=64.00 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=28.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST 282 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~ 282 (577)
-++|+||||+|||++|..+|..+ +...++++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 47999999999999999999874 45777887764
No 169
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.82 E-value=0.044 Score=55.30 Aligned_cols=92 Identities=17% Similarity=0.059 Sum_probs=50.6
Q ss_pred hhHHHHHhhhhcCCCchhhhHHHhhh-hhcCCCCCcccccCcHHHHHHHHHHHHCcCCC------ccccceeEEecCCCC
Q psy16204 186 RQDIREKIFYSTGFEPSLIETLEKDI-LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIM------PEFFKEALERHSHGT 258 (577)
Q Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~------~~~~k~ILL~GPpGt 258 (577)
.+++.+.+ ...++...+...+.+.+ ....+...++ .+.++..+.+.+..-+.. ......++|.||+|+
T Consensus 42 ~~~l~~~L-~~~dv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~Gs 116 (296)
T 2px0_A 42 LRKAEKLL-QETGIKESTKTNTLKKLLRFSVEAGGLT----EENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGA 116 (296)
T ss_dssp HHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHSSSCCC----TTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTS
T ss_pred HHHHHHHH-HHCCCCHHHHHHHHHHHHHHhhcccCCC----HHHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCC
Confidence 44444443 34666666665554433 1211111111 144555565555332211 112346889999999
Q ss_pred ChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204 259 GKTMLAKAVATEC----GTTFFNVSSST 282 (577)
Q Consensus 259 GKT~LAkaLA~el----~~~fv~v~~s~ 282 (577)
|||+++..||..+ |..+..+++..
T Consensus 117 GKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 117 GKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 9999999999765 44666666543
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.0009 Score=61.04 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
-|.|.|++|+|||++++.||+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987653
No 171
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.78 E-value=0.001 Score=60.10 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..++|.|++|+|||++++.|+..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458899999999999999999999876543
No 172
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.00095 Score=63.09 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=26.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.|+|.|+||+|||++|+.||+.++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 589999999999999999999999877654
No 173
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.76 E-value=0.00061 Score=61.47 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---CeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s 281 (577)
-|+|.|+||+|||++|+.|++.++ .++..++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 478999999999999999999886 234455443
No 174
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.0012 Score=59.72 Aligned_cols=31 Identities=23% Similarity=0.036 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~ 279 (577)
-|.|.|++|+|||++++.|++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999998 88888765
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.74 E-value=0.0094 Score=61.36 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=28.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~l 283 (577)
-++|+||+|+|||+|++.++..+. ...++++..+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 478999999999999999998872 45677877543
No 176
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.74 E-value=0.0034 Score=65.23 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-++|+|+||+|||+||..+|.++ +.++++++...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 458999999999999999998765 56788888764
No 177
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.72 E-value=0.00083 Score=63.35 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=25.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
..|+|.|+||+|||++++.||+.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46899999999999999999999997654
No 178
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.001 Score=65.11 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=30.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSSTLT 284 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~l~ 284 (577)
.-|+|.|+||+|||++|+.|++. .|.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 35899999999999999999998 78888867665443
No 179
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.68 E-value=0.0012 Score=62.11 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=26.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.|+|.|+||+|||++|+.|++.++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998776543
No 180
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.64 E-value=0.0029 Score=63.47 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-++|+|+||+|||++|..+|..+
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999864
No 181
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.64 E-value=0.028 Score=59.36 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=27.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s 281 (577)
-+++.|+||+|||++|..+|..+ +.++++++..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 47999999999999999888654 4577777774
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.63 E-value=0.0014 Score=61.02 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=27.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
.-+.|.||+|+|||++++.|+..+|..+ ++..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 4588999999999999999999997654 444443
No 183
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.63 E-value=0.004 Score=56.95 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=17.5
Q ss_pred eeEEecCCCCChHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA 268 (577)
-+.|.||+|+|||+|++++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999743
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.63 E-value=0.002 Score=62.46 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=27.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5689999999999999999999998766543
No 185
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.62 E-value=0.0014 Score=62.93 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=26.8
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
|+|.||||+||++.|+.||+.+|.+. ++..++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 68899999999999999999998765 444443
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.61 E-value=0.0015 Score=61.15 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=25.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|.|.||+|+|||++++.|++.+|++++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 58899999999999999999999977653
No 187
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.60 E-value=0.00099 Score=61.60 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=26.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|.|.|++|+|||++++.|++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887776543
No 188
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0016 Score=62.06 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
-|+|.|+||+|||++|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876543
No 189
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.55 E-value=0.002 Score=58.65 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=26.6
Q ss_pred eEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSS 280 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~ 280 (577)
|.|.|++|+|||++++.|++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999999 988876544
No 190
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.55 E-value=0.0016 Score=67.40 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=31.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+.|+|.||+|||||+||+.||+.++..++.++.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46899999999999999999999998888887643
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.54 E-value=0.002 Score=58.59 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-+.|.|++|+|||++++.|+..+ |.+++.++...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 347899999999999999999998 89998887543
No 192
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.53 E-value=0.0018 Score=63.00 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l 283 (577)
+-|+|.||||+||++.|+.||+.++.+. ++..++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdl 63 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDL 63 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHH
Confidence 5688999999999999999999998764 444443
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.50 E-value=0.019 Score=60.80 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=26.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s 281 (577)
-+++.|+||+|||++|..+|..+ |.++++++..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999988754 4577777764
No 194
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.49 E-value=0.0019 Score=59.26 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
.|.|.|++|+|||++++.||+.+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 578999999999999999999999876543
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.00048 Score=73.34 Aligned_cols=65 Identities=11% Similarity=-0.015 Sum_probs=59.6
Q ss_pred eeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhh
Q psy16204 315 YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVA 379 (577)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (577)
.+..+++..|++++|....+.++++.+.++-.++.-+...|..+|.|++.|+||||||+..+.+.
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999885433
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.39 E-value=0.032 Score=53.88 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=28.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
.+|++||+|+|||.+|-+++..++.+.+.+-..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999999999987777666554
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0018 Score=59.47 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=27.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-CCeEEEEe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-GTTFFNVS 279 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v~ 279 (577)
.-|.|.|++|+|||++++.|++.+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 358899999999999999999998 57777654
No 198
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.34 E-value=0.0039 Score=65.97 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHhhhhhcCCCCCccccc-CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 207 LEKDILQNNPNVQWNKVA-GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 207 ~~~~~~~~~~~v~~~dIi-G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+++|..++.+..++++- +|..+...+...+..+- ..+|+.|+||||||+++.+++..+
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSS------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345788888889999886 78888887777765421 278999999999999999999876
No 199
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.33 E-value=0.0021 Score=58.93 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=23.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
-|+|.|+||+|||++|+.|++.++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 57899999999999999999998863
No 200
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.33 E-value=0.013 Score=61.89 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=70.9
Q ss_pred CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEe---------cC---CchhhHHHhhcC
Q psy16204 416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA---------TN---HPYQLLTLCLEG 483 (577)
Q Consensus 416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIat---------TN---~p~~L~~allrr 483 (577)
|.|+||||+|.|.. ..++.||..|+.... +++|++| ++ .|..|++.++.|
T Consensus 296 ~~VliIDEa~~l~~------------~a~~aLlk~lEe~~~------~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI------------ECFTYLHRALESSIA------PIVIFASNRGNCVIRGTEDITSPHGIPLDLLDR 357 (456)
T ss_dssp ECEEEEESGGGCBH------------HHHHHHHHHTTSTTC------CEEEEEECCSEEECBTTSSCEEETTCCHHHHTT
T ss_pred ceEEEEechhhcCH------------HHHHHHHHHhhccCC------CEEEEecCCccccccccccccccccCChhHHhh
Confidence 36999999999964 578999999986542 3555565 33 266677777777
Q ss_pred cccc--cccCHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHH
Q psy16204 484 VVID--VNLDFHKISKML--------EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553 (577)
Q Consensus 484 ~~i~--~~vdl~~LA~~t--------~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~ 553 (577)
+.+. ..++.+++.+.. ..++...+..+++.|+....|..+.-.. ....+........|+.+|+++|+.
T Consensus 358 ~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~--~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT--PANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHH--HHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHH--HHHHHHhhcCCCccCHHHHHHHHH
Confidence 6542 123333333322 1456666666665553444454432111 111122222345799999999998
Q ss_pred Hh
Q psy16204 554 RC 555 (577)
Q Consensus 554 ~~ 555 (577)
-+
T Consensus 436 ~~ 437 (456)
T 2c9o_A 436 LF 437 (456)
T ss_dssp HS
T ss_pred Hh
Confidence 75
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0023 Score=59.37 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|.|.|++|+|||++++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 8887653
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.28 E-value=0.13 Score=52.25 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred hhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC--cCCC-ccccceeEEecCCCCChHH
Q psy16204 186 RQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL--PTIM-PEFFKEALERHSHGTGKTM 262 (577)
Q Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~--pl~~-~~~~k~ILL~GPpGtGKT~ 262 (577)
.++++..+ ...++...+...+-+.+-. ..- + -..-..+.|.+.+.. |+.. .....-++|.||+|+|||+
T Consensus 48 ~~~l~~~L-~~~dv~~~~~~~~~~~~~~----~~~-~--~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTT 119 (306)
T 1vma_A 48 REELEELL-IQADVGVETTEYILERLEE----KDG-D--ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTT 119 (306)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHHHHTT----CCS-C--HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHH
T ss_pred HHHHHHHH-HHCCCCHHHHHHHHHHHHh----cCH-H--HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHH
Confidence 44444443 3466777766655444322 111 1 122334444444422 1111 1123458899999999999
Q ss_pred HHHHHHHHh---CCeEEEEecC
Q psy16204 263 LAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 263 LAkaLA~el---~~~fv~v~~s 281 (577)
++..||..+ +..+..+++.
T Consensus 120 l~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 120 SCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEEccc
Confidence 999999765 4555555554
No 203
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.27 E-value=0.0025 Score=59.37 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=28.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
.-+.|.||+|+|||+++++||..+ |...+.++..++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 457899999999999999999998 555456665444
No 204
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.23 E-value=0.0027 Score=60.94 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
.-++|.||+|+|||++++.|++.+|...+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 46899999999999999999999987543
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.21 E-value=0.0011 Score=61.25 Aligned_cols=29 Identities=14% Similarity=0.013 Sum_probs=24.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
.-|+|.|++|+|||++++.|++.++.+++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999875443
No 206
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.20 E-value=0.033 Score=63.35 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=18.5
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.+++.||+|+|||+++..+...
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999977776544
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.17 E-value=0.0084 Score=62.47 Aligned_cols=34 Identities=6% Similarity=-0.070 Sum_probs=27.8
Q ss_pred eEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l 283 (577)
++++||||+|||+||-.++.++ +..+++++...-
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 7999999999999988777654 567888887643
No 208
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.14 E-value=0.044 Score=58.38 Aligned_cols=33 Identities=21% Similarity=0.018 Sum_probs=27.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
-+++.|+||+|||++|-.+|..+ |.++++++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 37999999999999999888765 5678887765
No 209
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0032 Score=57.51 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..|.|.|++|+|||++++.||+. |.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 46889999999999999999998 877654
No 210
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0042 Score=61.49 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=28.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
..|.|.|++|+|||++++.||..++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4689999999999999999999999987664
No 211
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.05 E-value=0.0034 Score=59.60 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
-|.|.|++|||||++++.|++.+|++++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 478999999999999999999999887553
No 212
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.04 E-value=0.0047 Score=57.62 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.|.|.|++|+|||++++.|++.+|.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 57899999999999999999999987654
No 213
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.04 E-value=0.0045 Score=60.98 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..+.|.||+|+|||++++.||+.++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999977643
No 214
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.03 E-value=0.0016 Score=60.11 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=23.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
.-|+|.|++|+|||++++.|++.++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 458999999999999999999987543
No 215
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.03 E-value=0.0047 Score=59.74 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=31.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCe--------EEEEecCcccc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTT--------FFNVSSSTLTS 285 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~--------fv~v~~s~l~~ 285 (577)
.-|.|.|++|+|||++|+.|++.++.+ ++.++..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 458899999999999999999999976 34677777643
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.02 E-value=0.0025 Score=66.49 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=30.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+-|+|.||+|||||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4688999999999999999999999888776665
No 217
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.99 E-value=0.03 Score=54.74 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=24.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSS 280 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~ 280 (577)
-++++|++|+|||+++..++..+ +..++.+..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 36889999999999999888776 455555543
No 218
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.98 E-value=0.0049 Score=57.73 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v 278 (577)
-|.|.|++|+|||++++.|++ +|.+++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 578999999999999999998 88876554
No 219
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.98 E-value=0.031 Score=58.94 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|||||+|.|.||.-..
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 67999999999999999997653
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.97 E-value=0.0051 Score=59.92 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=26.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
..|.|.||+|+|||++++.||+.+|..++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 35789999999999999999999998765
No 221
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.94 E-value=0.046 Score=57.16 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480 (577)
Q Consensus 402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al 480 (577)
..-+-+|.+|-...|.||++||--.-. +......+...|........ +-+|..|...+.+...+
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~L-------D~~~r~~l~~~l~~~~~~~g--------~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSAL-------DEQLRRQIREDMIAALRANG--------KSAVFVSHDREEALQYA 206 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTS-------CHHHHHHHHHHHHHHHHHTT--------CEEEEECCCHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccC-------CHHHHHHHHHHHHHHHHhCC--------CEEEEEeCCHHHHHHHC
Confidence 344445666778899999999953221 12333344445555444332 35677787777665543
No 222
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.89 E-value=0.042 Score=57.49 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=20.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|||||+|.|.||.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 6799999999999999999665
No 223
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.88 E-value=0.036 Score=58.11 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|||||+|.|.||.-..
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCChHHHHHHHHHcCCC
Confidence 67999999999999999997653
No 224
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.87 E-value=0.0055 Score=56.00 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=26.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG---TTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s 281 (577)
.-|+|.|++|+|||++++.||..++ ..+..++..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 4588999999999999999999874 445555543
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0063 Score=58.17 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=26.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
..|.|.|++|+|||++++.||+.+|.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 358899999999999999999999987653
No 226
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.86 E-value=0.011 Score=61.31 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+++.||+|+|||++.++++..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48999999999999999998765
No 227
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.85 E-value=0.091 Score=51.70 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|.+.|+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 367999999999999999997653
No 228
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.85 E-value=0.013 Score=58.37 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|+|||+|+++|+.-.
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6799999999999999999765
No 229
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.85 E-value=0.25 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.+++.+|+|+|||..+-..+-..
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 469999999999998776655544
No 230
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.84 E-value=0.013 Score=60.75 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=27.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
-+++.|+||+|||++|..+|..+ +.++.+++..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 47999999999999999998764 6777777764
No 231
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.84 E-value=0.0065 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-++|.||+|+|||++++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4689999999999999999986554
No 232
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.84 E-value=0.0047 Score=60.58 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-CCeEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-GTTFF 276 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-~~~fv 276 (577)
.-|+|.|+||+|||++|+.|++.+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358999999999999999999974 65544
No 233
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.79 E-value=0.044 Score=52.98 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=26.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
.|++|+++|.|||++|-.+|-.+ |..+..+..-
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 58999999999999999988664 6666666543
No 234
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.77 E-value=0.099 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|++.|+.-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 368999999999999999987653
No 235
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.74 E-value=0.0052 Score=63.58 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=30.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+-+++.||+|||||+||..||+.++..++.+++-.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 45789999999999999999999998887776643
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.74 E-value=0.0051 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+-++|.||+|+|||++++.|++.++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3578999999999999999999875
No 237
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.74 E-value=0.0064 Score=57.73 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=26.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
-|.|.|++|||||++++.||+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57899999999999999999999999874
No 238
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.67 E-value=0.006 Score=63.55 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=28.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
.-|++.||+|+|||+||+.||+.++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999999976665554
No 239
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.62 E-value=0.1 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.9
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|||||+|.|.||.-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6799999999999999999654
No 240
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.61 E-value=0.027 Score=52.52 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=28.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
.-+.+.|++|+|||++++.|+..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 457899999999999999999876 66666665543
No 241
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.60 E-value=0.084 Score=52.46 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|++.|+.-+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 367999999999999999997653
No 242
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.066 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|||||+|.|.||.-..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 67999999999999999997653
No 243
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.53 E-value=0.065 Score=55.93 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=20.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|||||+|.|.||.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 6799999999999999999765
No 244
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.53 E-value=0.01 Score=58.96 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.-|.|.|++|+|||++|+.|+ .+|++++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 468999999999999999999 68877644
No 245
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.51 E-value=0.13 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.4
Q ss_pred ceeEEecCCCCChHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA 268 (577)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999998776554
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.51 E-value=0.0059 Score=56.71 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh-CCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC-GTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el-~~~fv~ 277 (577)
-+.+.|++|+|||++++.|+..+ ++.++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 47899999999999999999987 554443
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.50 E-value=0.0062 Score=63.17 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=28.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
-|++.||+|||||+||..||+.++..++..++-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 478999999999999999999998777665544
No 248
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.48 E-value=0.0089 Score=56.05 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG----TTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s 281 (577)
.-|+|.|++|+|||++++.|+..++ .+++.++..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 4578999999999999999998764 557777643
No 249
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.47 E-value=0.05 Score=56.48 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.9
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|||||+|.|.||.-.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6799999999999999999654
No 250
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.46 E-value=0.19 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.3
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|+|+|+.-..
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHhcCCC
Confidence 67999999999999999997553
No 251
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0025 Score=68.44 Aligned_cols=64 Identities=8% Similarity=-0.112 Sum_probs=58.7
Q ss_pred eeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchh
Q psy16204 315 YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMV 378 (577)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (577)
.+...++..|++++|....+.++.+.+.++-.++.-+...|..+|.|++.|+||||||+..+.+
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHH
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHH
Confidence 5567888999999999999999999999999999999999999999999999999999988543
No 252
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.0028 Score=67.88 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=56.6
Q ss_pred eccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204 316 LVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM 377 (577)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (577)
+...++..|.+++|....+.++.+.++++-.++..+...|..+|-|++.|+||||||+..+.
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999998744
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.31 E-value=0.016 Score=54.32 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.31 E-value=0.0088 Score=54.90 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||+|+|||+|++.|+..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998764
No 255
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.0029 Score=68.59 Aligned_cols=61 Identities=13% Similarity=-0.021 Sum_probs=55.9
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204 317 VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM 377 (577)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (577)
...++..|.+++|....+.++.+.+.++-.++..+...|..+|-|+++|+++|+||+..+.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999997744
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.26 E-value=0.017 Score=71.19 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=26.1
Q ss_pred eEEecCCCCChHHHHHHHHHH-h--CCeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATE-C--GTTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~e-l--~~~fv~v~~s~ 282 (577)
|++|||+|+|||+||-.++.+ + |.....++...
T Consensus 1434 iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~ 1469 (1706)
T 3cmw_A 1434 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1469 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 899999999999999866543 3 56777777764
No 257
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.24 E-value=0.0067 Score=63.78 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=25.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
.-|+|.|+||+|||++|+.|++.++..++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 458899999999999999999999876543
No 258
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.0033 Score=67.66 Aligned_cols=62 Identities=10% Similarity=-0.030 Sum_probs=57.1
Q ss_pred eccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204 316 LVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM 377 (577)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (577)
+...++..|.+++|....+.++.+.+.++-..+.-+...|..+|.|+++|+|||+||+..+.
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998744
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.23 E-value=0.0095 Score=54.56 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||+|+|||++++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999999876
No 260
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.23 E-value=0.054 Score=51.47 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.8
Q ss_pred ceeEEecCCCCChHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKA 266 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAka 266 (577)
+.+|+.+|+|+|||..+-.
T Consensus 68 ~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCEEECCCSSHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHH
Confidence 4699999999999987543
No 261
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.22 E-value=0.029 Score=60.89 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..++|+|++|+|||+|+..|+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 3589999999999999998887643
No 262
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.17 E-value=0.01 Score=54.34 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=24.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
-+.|.||+|+|||+|++.|+..+. -+.+...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~ 39 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA--EIKISIS 39 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence 467999999999999999998853 3444443
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.17 E-value=0.011 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=22.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||+|+|||+|++.|+..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999987
No 264
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.13 E-value=0.15 Score=47.38 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=17.7
Q ss_pred ceeEEecCCCCChHHHH-HHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLA-KAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LA-kaLA~el 271 (577)
+.+++.+|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 46999999999999873 3444433
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.10 E-value=0.0094 Score=56.10 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998875
No 266
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.06 E-value=0.045 Score=57.77 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|||||+|.|.|+.-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 37899999999999999999643
No 267
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.05 E-value=0.57 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.5
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
+.+++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 4689999999999987654443
No 268
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.93 E-value=0.017 Score=56.15 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=26.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFN 277 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~ 277 (577)
-|.+.|++|||||++|+.||+.+|++|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999854
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.93 E-value=0.0072 Score=55.78 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-|.|.|++|+|||++++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999863
No 270
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.004 Score=66.56 Aligned_cols=63 Identities=8% Similarity=-0.098 Sum_probs=57.0
Q ss_pred eccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchh
Q psy16204 316 LVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMV 378 (577)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (577)
+...++..|.+++|....+.++.+.+.++-..+.-+...|..+|-|++.|||||+||+..+.+
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHH
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999988543
No 271
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.76 E-value=0.2 Score=46.54 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.3
Q ss_pred ceeEEecCCCCChHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAV 267 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaL 267 (577)
+.+++.+|+|+|||..+-..
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~ 61 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLP 61 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHH
Confidence 47899999999999875433
No 272
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.74 E-value=0.016 Score=61.90 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
-|++.||+|+|||+||..||+.++..++..+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 47899999999999999999999987766544
No 273
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.70 E-value=0.32 Score=48.49 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.4
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+|+.+|+|+|||...-
T Consensus 132 ~~~l~~a~TGsGKT~a~~ 149 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFV 149 (300)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCccHHHH
Confidence 579999999999998643
No 274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.70 E-value=0.25 Score=53.23 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred eEEecCCCCChHHHHHH--HHHHh--CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCC
Q psy16204 250 ALERHSHGTGKTMLAKA--VATEC--GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPT 325 (577)
Q Consensus 250 ILL~GPpGtGKT~LAka--LA~el--~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~ 325 (577)
++|.||+|+|||+|++. ++... +..-++++..+ ....+......
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~--------~~~~~~~~~~~------------------------ 89 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE--------TPQDIIKNARS------------------------ 89 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--------CHHHHHHHHGG------------------------
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC--------CHHHHHHHHHH------------------------
Q ss_pred ccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhh----hcccCCCCcccCCCC--c
Q psy16204 326 TTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVAT----HFTWGKKGTCQSHEG--H 399 (577)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--d 399 (577)
--|..+..... .+.+.........+. +
T Consensus 90 -----------------------------------------------~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~ 122 (525)
T 1tf7_A 90 -----------------------------------------------FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFD 122 (525)
T ss_dssp -----------------------------------------------GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHH
T ss_pred -----------------------------------------------cCCChHHhhccCcEEEEecCcccchhhhhcccC
Q ss_pred chhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh---
Q psy16204 400 SGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL--- 476 (577)
Q Consensus 400 ~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L--- 476 (577)
.+..............|.+|+|||+-.+.+ ..+.+...++.+..++..+.... +-||.+|...+.+
T Consensus 123 l~~~~~~~~~~LS~g~~~~lilDe~t~~~~---~~~lD~~~~~~l~~ll~~l~~~g--------~tvl~itH~~~~~~~~ 191 (525)
T 1tf7_A 123 LSALIERINYAIQKYRARRVSIDSVTSVFQ---QYDASSVVRRELFRLVARLKQIG--------ATTVMTTERIEEYGPI 191 (525)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEECSTTTST---TTCCHHHHHHHHHHHHHHHHHHT--------CEEEEEEECSSSSSCS
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCHHHHHH---hcCCHHHHHHHHHHHHHHHHHCC--------CEEEEEecCCCCcccc
Q ss_pred -----HHHhhcCc
Q psy16204 477 -----LTLCLEGV 484 (577)
Q Consensus 477 -----~~allrr~ 484 (577)
...+..++
T Consensus 192 ~~~~i~~~laD~v 204 (525)
T 1tf7_A 192 ARYGVEEFVSDNV 204 (525)
T ss_dssp STTSCHHHHCSEE
T ss_pred ccccceeeeeeEE
No 275
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.69 E-value=0.24 Score=47.95 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
+.+++.+|+|+|||..+-..+-+.+...+.+-..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 4799999999999998877776667666665553
No 276
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.61 E-value=0.31 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.+++.+|+|+|||..+-..+.++
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 478999999999999876655443
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.60 E-value=0.014 Score=57.06 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
++|+|.||+|+|||+||..|++... .++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 5689999999999999999998866 5554443
No 278
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.57 E-value=0.027 Score=58.51 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.3
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|||||+|.|.||.-..
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEECCCCccHHHHHHHHHcCCC
Confidence 67999999999999999996543
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.57 E-value=0.018 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||+|+|||+|++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999998764
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.55 E-value=0.025 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
-|+|.||+|+|||+|++.|.++....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 47899999999999999999886533
No 281
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.52 E-value=0.024 Score=63.51 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l 283 (577)
.-|+|.|.+|+|||++|++|++.+ |.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 458999999999999999999999 999998875433
No 282
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.40 E-value=0.38 Score=45.61 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.6
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 479999999999998754
No 283
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.39 E-value=0.024 Score=56.00 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFF 276 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv 276 (577)
+-|.|+||+|||++|+.|++.++++++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 568999999999999999999998764
No 284
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.37 E-value=0.26 Score=54.67 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=27.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-------CCeEEEEecCc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-------GTTFFNVSSST 282 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-------~~~fv~v~~s~ 282 (577)
.++|+.|.+|+|||.+++.|...+ .+.|+.++...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 469999999999999999877654 24678887763
No 285
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.35 E-value=0.11 Score=48.75 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.4
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 469999999999998644
No 286
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.32 E-value=0.085 Score=56.54 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.2
Q ss_pred CcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 239 LPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 239 ~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.|+.+. ..+++.||+|+|||+|++.|++..
T Consensus 169 ~pi~rG---Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRG---QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTT---CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCC---cEEEEecCCCCChhHHHHHHHHHH
Confidence 455443 468999999999999999999865
No 287
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.22 E-value=0.36 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|+|||+|+++|+..+
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999764
No 288
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.16 E-value=0.35 Score=50.36 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.7
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+|+.||+|+|||..+-
T Consensus 132 ~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CEEEEECCSSSSHHHHHH
T ss_pred CcEEEEcCCCCchhHHHH
Confidence 579999999999998743
No 289
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.15 E-value=0.027 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+-+.|.||+|+|||+|++.|+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3578999999999999999998764
No 290
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.11 E-value=0.021 Score=62.12 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=28.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
.-|+|.|.||+|||++|+.||+.++ .....++..++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3588999999999999999999985 44445555543
No 291
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.09 E-value=0.028 Score=54.23 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=24.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC--CeEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG--TTFFN 277 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~ 277 (577)
.-|.|.|++|+|||++++.|++.++ ..++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3478999999999999999999986 45443
No 292
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.05 E-value=0.3 Score=46.14 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.3
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 468999999999998643
No 293
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.02 E-value=0.021 Score=57.25 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=25.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l 283 (577)
-|.+.||+|+|||++|+.|++.++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 478999999999999999999876 44566776665
No 294
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.91 E-value=0.75 Score=46.01 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.2
Q ss_pred ceeEEecCCCCChHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAV 267 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaL 267 (577)
+.+++.+|+|+|||..+-..
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHH
Confidence 46899999999999875433
No 295
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.90 E-value=0.27 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.4
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 478999999999998654
No 296
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.88 E-value=0.35 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.3
Q ss_pred ceeEEecCCCCChHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA 268 (577)
+.+|+.+|+|+|||..+-..+
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 579999999999998765444
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.84 E-value=0.061 Score=54.13 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=23.4
Q ss_pred cceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
+.-|.+.|++|+|||+||+.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999988863
No 298
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.81 E-value=0.033 Score=52.09 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=21.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||+|+|||+|+++|+..+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 377999999999999999998874
No 299
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.81 E-value=0.035 Score=53.36 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
-+.|.||.|+|||++++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 36799999999999999999988754
No 300
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.79 E-value=0.66 Score=42.22 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.9
Q ss_pred ceeEEecCCCCChHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKA 266 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAka 266 (577)
+.+++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 5799999999999976553
No 301
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.77 E-value=0.033 Score=53.58 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998865
No 302
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.66 E-value=0.034 Score=52.98 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.7
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSST 282 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~ 282 (577)
+|++|++|+|||++|..++.. +.+.+++.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888888764
No 303
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.62 E-value=0.19 Score=48.46 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.5
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998654
No 304
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.60 E-value=0.037 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||+|+|||+|++.|+...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 305
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.55 E-value=0.14 Score=49.75 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.9
Q ss_pred ceeEEecCCCCChHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKA 266 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAka 266 (577)
+.+|+.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4689999999999987543
No 306
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.48 E-value=0.11 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.-+.|.||+|+|||++++.||..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999776
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.42 E-value=0.046 Score=60.31 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=29.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG----TTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s 281 (577)
..|+|.|++|+|||++|++|++.++ .+++.++..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 4588999999999999999999986 778888754
No 308
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.42 E-value=0.11 Score=57.37 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHH
Q psy16204 225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA 268 (577)
-.+..++.+..++..+ .-.|++||||||||.++-.+.
T Consensus 190 LN~~Q~~AV~~al~~~-------~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQK-------ELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp CCHHHHHHHHHHHHCS-------SEEEEECCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC-------CceEEECCCCCCHHHHHHHHH
Confidence 3566677777776421 136999999999997544333
No 309
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.40 E-value=0.053 Score=51.77 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=23.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-CCeE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-GTTF 275 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-~~~f 275 (577)
.-|.|.|++|+|||++++.|++.+ +..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 347899999999999999999999 4433
No 310
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.37 E-value=0.15 Score=54.99 Aligned_cols=44 Identities=9% Similarity=-0.128 Sum_probs=35.6
Q ss_pred cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHH
Q psy16204 224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
+|.+..++.|.+.+...- ..-.+-|.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC--DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc--CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999884321 11235688999999999999999997
No 311
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.36 E-value=0.15 Score=55.65 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-------CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-------GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-------~~~fv~v~~s 281 (577)
.++|+.|++|+|||++++.|...+ .+.|+-++..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 368999999999999999887543 2456666654
No 312
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.081 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..|++.|++|+|||+|+.++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 313
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.12 Score=57.34 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|.+.|+..+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999999754
No 314
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.31 E-value=0.077 Score=49.56 Aligned_cols=32 Identities=9% Similarity=-0.093 Sum_probs=23.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSS 280 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~ 280 (577)
-++++||+|+|||+++..++..+ +..++.+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 46899999999999997776554 555555443
No 315
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.21 E-value=0.065 Score=58.52 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.+.||.|+|||+|++.|+....
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999997653
No 316
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.20 E-value=0.051 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=21.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|+|.|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999987
No 317
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.19 E-value=0.021 Score=55.40 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh-CCeE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC-GTTF 275 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el-~~~f 275 (577)
.-|.|.|++|+|||++++.|++.+ +..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999998 4433
No 318
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.10 E-value=0.49 Score=49.09 Aligned_cols=34 Identities=29% Similarity=0.262 Sum_probs=28.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s 281 (577)
..+|+.+|+|+|||.++-.++..++.+.+.+-..
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3589999999999999998888888777776654
No 319
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.09 E-value=1 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=18.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
+.+|+.+|+|+|||..+-..+-.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999877554443
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.07 E-value=0.031 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=14.7
Q ss_pred eeEEecCCCCChHHHHHHHH-HHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVA-TECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA-~el~ 272 (577)
-+.|.||+|+|||+|++.|+ ..+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 47899999999999999999 7653
No 321
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.06 E-value=0.025 Score=60.06 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..|+|.|.||+|||++++.|++.++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999998763
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.06 E-value=0.056 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-.+|+||.|+|||+|+++|+-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3579999999999999999988763
No 323
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.05 E-value=0.053 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+.|.||+|+|||+|++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36899999999999999999876
No 324
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.99 E-value=0.052 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||+|+|||+|+++|+....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999998864
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.96 E-value=0.055 Score=53.53 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-++|.||+|+|||+++++|+..+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 58899999999999999999764
No 326
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.88 E-value=0.063 Score=46.28 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..|++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 327
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.86 E-value=0.057 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.1
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.++|.|++|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 328
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.83 E-value=0.45 Score=48.49 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
+-++|.|++|+|||+++..||..+ +..+..+++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458899999999999999999765 4566666654
No 329
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.76 E-value=0.054 Score=54.35 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=22.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.-+.|.||+|+|||+|++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999999876
No 330
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.76 E-value=0.17 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.-+.|.||.|+|||++++.||..+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999875
No 331
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.74 E-value=0.15 Score=55.61 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l 283 (577)
-+.+.||.|+|||+|++.|+..... --+.+++.++
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc
Confidence 3789999999999999999977642 2344555443
No 332
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.74 E-value=0.4 Score=55.87 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.4
Q ss_pred eEEecCCCCChHHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~ 269 (577)
++|.||.|+|||++.|.++.
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHH
Confidence 78999999999999999874
No 333
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.67 E-value=0.06 Score=49.24 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.1
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.++|.|++|+|||+|.+.++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 334
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.66 E-value=0.16 Score=54.00 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=33.6
Q ss_pred CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..++++.-....+..|...+.. .-.-+++.||+|+|||+++++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~~------~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIKR------PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHTS------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHHh------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3455555445555566665321 112478999999999999999998874
No 335
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.62 E-value=0.067 Score=46.28 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|+.++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 336
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.60 E-value=0.066 Score=45.81 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 337
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.51 E-value=0.78 Score=50.28 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.0
Q ss_pred eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l 283 (577)
+.+.||.|+|||+|++.|+..... --+.+++.++
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred EEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 689999999999999999876642 2355565554
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.46 E-value=0.073 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998763
No 339
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.44 E-value=0.11 Score=57.20 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=24.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNV 278 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v 278 (577)
..+++.|+||||||+++++++..+ +..++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 468999999999999999998765 4454444
No 340
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.44 E-value=0.068 Score=46.72 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=19.1
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.|++.|++|+|||+|..++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 689999999999999999863
No 341
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.39 E-value=0.091 Score=48.57 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=31.5
Q ss_pred cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+-+.++..+.+...+.. .....++|.|++|+|||+|+..++..+.
T Consensus 10 ~l~~~~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 10 LLAENKRLAEKNREALRE-----SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp -CHHHHHHHHHHHHHHHH-----HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHhhcHHHHHHHHHhhcc-----cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344455555555554421 1234789999999999999999998864
No 342
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.36 E-value=0.076 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|+.++...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.34 E-value=0.072 Score=49.03 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..|+|.|++|+|||+|+.++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 344
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.32 E-value=0.11 Score=56.82 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=23.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
..|.|.|.+|||||++|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999985
No 345
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.31 E-value=0.078 Score=45.83 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 346
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.27 E-value=0.059 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.|+|.|++|||||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999975
No 347
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.20 E-value=1.6 Score=45.32 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=25.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh--------CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC--------GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el--------~~~fv~v~~s 281 (577)
+.+|+.+|+|+|||..+-..+... +...+.+-..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 479999999999999877666554 5555555543
No 348
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.19 E-value=0.62 Score=54.38 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=18.2
Q ss_pred eEEecCCCCChHHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~ 269 (577)
++|.||.|+|||++.|.+|-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999853
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.19 E-value=0.076 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.2
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.++|.|++|+|||+|.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999974
No 350
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.19 E-value=0.075 Score=54.01 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||+|+|||+|++.|+..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 477999999999999999998764
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.14 E-value=0.083 Score=45.78 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|.+++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999764
No 352
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.08 E-value=0.7 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|+|||+|+|.|+..+
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999764
No 353
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.07 E-value=1.1 Score=46.93 Aligned_cols=34 Identities=6% Similarity=0.165 Sum_probs=24.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---C-CeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---G-TTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~-~~fv~v~~s 281 (577)
+.+|++||+|+|||..+-.++..+ + ..++.+-..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~ 166 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPT 166 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESS
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 478999999999999987666552 2 355555543
No 354
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.05 E-value=2 Score=47.43 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=23.8
Q ss_pred ceeEEecCCCCChHHHHHHHH-HH---hCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVA-TE---CGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA-~e---l~~~fv~v~~s 281 (577)
+.+|+.||+|+|||+.+-..+ +. -+...+++...
T Consensus 47 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 579999999999999985333 22 24556665554
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.02 E-value=0.31 Score=58.61 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=25.8
Q ss_pred eEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcc
Q psy16204 250 ALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTL 283 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l 283 (577)
+.++||+|+|||+|++.|....... -+.+++.++
T Consensus 447 vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i 482 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDV 482 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EEEEecCCCcHHHHHHHhccccccccCcccCCCccc
Confidence 6899999999999999999887532 344554443
No 356
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.00 E-value=0.14 Score=56.38 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+..++.+..++.. ..+|+.||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l~~--------~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR--------PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHTC--------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCeEEECCCCCCHHHHHHHHHHHH
Confidence 34555555555521 257899999999999887776654
No 357
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.99 E-value=0.086 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.97 E-value=0.088 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.96 E-value=0.09 Score=45.41 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.9
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|..++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999976
No 360
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.95 E-value=0.46 Score=50.48 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.4
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+|+.+|+|+|||..+-
T Consensus 112 ~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCccHHHH
Confidence 579999999999998543
No 361
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.95 E-value=1 Score=49.13 Aligned_cols=147 Identities=13% Similarity=0.004 Sum_probs=0.0
Q ss_pred eEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCccccccccchHHHHHH-HHHHhhhhhccccCcceeeccc
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSSTLTSKYRGESEKLVRL-LFEMVSFLVGLHSNKTFYLVGV 319 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~l~~k~~G~~e~~vr~-lF~~a~~~~~~~~~~~~~~~~~ 319 (577)
+.|.||.|+|||+|+|+|+... ...+-++.-.-......--.+..... .........-..=.+.+-|-+.
T Consensus 315 ~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 394 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL 394 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCc
Q psy16204 320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGH 399 (577)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 399 (577)
.+..+..--|+++++..+-.
T Consensus 395 ~~~~~~~LSGGe~qrv~lAr------------------------------------------------------------ 414 (538)
T 1yqt_A 395 YDREVNELSGGELQRVAIAA------------------------------------------------------------ 414 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHH------------------------------------------------------------
T ss_pred hcCChhhCCHHHHHHHHHHH------------------------------------------------------------
Q ss_pred chhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHH
Q psy16204 400 SGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTL 479 (577)
Q Consensus 400 ~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~a 479 (577)
+-...|.||++||- ..+-+...+..+..+|..+-.-.+. -||+.|...+.+...
T Consensus 415 -----------aL~~~p~lLlLDEP--------t~~LD~~~~~~i~~~l~~l~~~~g~-------tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 415 -----------TLLRDADIYLLDEP--------SAYLDVEQRLAVSRAIRHLMEKNEK-------TALVVEHDVLMIDYV 468 (538)
T ss_dssp -----------HHTSCCSEEEEECT--------TTTCCHHHHHHHHHHHHHHHHHHTC-------EEEEECSCHHHHHHH
T ss_pred -----------HHHhCCCEEEEeCC--------cccCCHHHHHHHHHHHHHHHHhCCC-------EEEEEeCCHHHHHHh
Q ss_pred hhc
Q psy16204 480 CLE 482 (577)
Q Consensus 480 llr 482 (577)
+-+
T Consensus 469 ~dr 471 (538)
T 1yqt_A 469 SDR 471 (538)
T ss_dssp CSE
T ss_pred CCE
No 362
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.086 Score=45.66 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.2
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.|++.|++|+|||+|..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.92 E-value=0.09 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999753
No 364
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.92 E-value=0.09 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 365
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.92 E-value=0.086 Score=45.90 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.4
Q ss_pred eeEEecCCCCChHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA 268 (577)
.|++.|++|+|||+|+.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 366
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.91 E-value=0.24 Score=53.90 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.9
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
+..|+|.|++|+|||+++..||..+ |..+..+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4578999999999999999999776 5666666663
No 367
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.90 E-value=0.079 Score=46.00 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.2
Q ss_pred eeEEecCCCCChHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA 268 (577)
.|++.|++|+|||+|.+++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57999999999999999885
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.89 E-value=0.099 Score=45.27 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.6
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 369
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.86 E-value=0.086 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.9
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
..|+|.|++|+|||+|.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999975
No 370
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.86 E-value=0.094 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.|++.|++|+|||+|.+++..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 371
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.85 E-value=0.093 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 372
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.82 E-value=0.19 Score=53.53 Aligned_cols=36 Identities=25% Similarity=0.165 Sum_probs=28.6
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
+..|+|.|++|+|||+++..||..+ |..+..+++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3568999999999999999999876 35666666653
No 373
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.77 E-value=0.18 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.-+.|.||+|+|||++++.||..+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999775
No 374
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.72 E-value=0.24 Score=50.64 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=25.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~ 280 (577)
..|.|.|+||+|||+|+..|+..+ |..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 468899999999999999999876 444444443
No 375
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.70 E-value=1.1 Score=42.42 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.3
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 478999999999998654
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.68 E-value=0.097 Score=53.83 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=27.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCcc
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSSTL 283 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~l 283 (577)
.-+.|.||+|||||++++.|+..++. .+..+....+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 35789999999999999999998752 3444555443
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.64 E-value=0.1 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 378
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.62 E-value=0.1 Score=50.67 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTFFNVS 279 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~ 279 (577)
.|-|+|..|||||++++.+++ +|++++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 578999999999999999998 999876544
No 379
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.60 E-value=0.095 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..+.|+||+|+|||+|++.|+..+...
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 357899999999999999999987433
No 380
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.60 E-value=1.5 Score=48.83 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=20.1
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|+|||+|++.|+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999764
No 381
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.60 E-value=0.13 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.015 Sum_probs=18.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-|.|.|++|+|||++++.|++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37788999999999999999987
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.59 E-value=0.094 Score=54.45 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
..+++.||+|+|||+++++|+..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999999764
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.57 E-value=0.18 Score=52.55 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.-++|.||.|+|||++++.||..+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Confidence 357899999999999999999876
No 384
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.57 E-value=0.1 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999753
No 385
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.55 E-value=1.1 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.6
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
+.+++.+|+|+|||..+-..+-
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHH
Confidence 4699999999999987664443
No 386
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.55 E-value=0.1 Score=46.18 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=20.3
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|+.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 387
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.55 E-value=0.1 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..|++.|++|+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 388
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.52 E-value=0.1 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998753
No 389
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.51 E-value=0.11 Score=50.01 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=24.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC---CeEEEE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG---TTFFNV 278 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v 278 (577)
-|.|.|++|+|||++++.|++.+. .+++.+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 367889999999999999999874 444433
No 390
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.49 E-value=0.11 Score=51.35 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=26.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS 281 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s 281 (577)
.|++.|+||||||++|-.+|..+ |..++.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999888775 5555555543
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.48 E-value=0.11 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=21.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.-+.|.|++|+|||+|++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 467899999999999999998875
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.47 E-value=0.11 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.7
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999965
No 393
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.46 E-value=3.4 Score=42.84 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.8
Q ss_pred ceeEEecCCCCChHHHH
Q psy16204 248 KEALERHSHGTGKTMLA 264 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LA 264 (577)
+.+++.+|+|+|||..+
T Consensus 94 ~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 94 RDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCchHHH
Confidence 57999999999999843
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.46 E-value=0.11 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=21.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+-+.|.|++|+|||+++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999876
No 395
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.43 E-value=0.1 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 396
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.42 E-value=0.11 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999854
No 397
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.41 E-value=0.14 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
.++||.|++|+|||++|.++.+. |..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 58999999999999999999884 5443
No 398
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.40 E-value=0.078 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.2
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|++.|+.-..
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 67999999999999999986543
No 399
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.39 E-value=0.083 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-+.|.||.|+|||+|++.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999975
No 400
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.39 E-value=0.095 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.-+.|.||.|+|||+|++.|+.-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999997653
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.38 E-value=0.11 Score=45.93 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 402
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.37 E-value=0.098 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=19.4
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999863
No 403
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.37 E-value=1.2 Score=47.98 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.3
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+|+.+|+|+|||..+-
T Consensus 61 ~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 61 HDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCcHHHHHHH
Confidence 579999999999998543
No 404
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.35 E-value=1.3 Score=44.25 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.7
Q ss_pred ceeEEecCCCCChHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK 265 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk 265 (577)
+.+|+.+|+|+|||..+-
T Consensus 65 ~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCchHHHHHH
Confidence 579999999999998764
No 405
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.34 E-value=0.11 Score=46.44 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 406
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.32 E-value=0.084 Score=51.27 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|++.|+.-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 368999999999999999986553
No 407
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.31 E-value=0.17 Score=49.10 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=24.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGTTF 275 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~~f 275 (577)
-|.|.|++|+|||++++.|++.++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 478899999999999999999998743
No 408
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.30 E-value=0.11 Score=46.06 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-.|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999998887643
No 409
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.28 E-value=0.11 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999754
No 410
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.25 E-value=0.11 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
..|++.|++|+|||+|..++..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999864
No 411
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.20 E-value=0.12 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|..++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 412
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.17 E-value=0.12 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.12 E-value=0.09 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 414
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.07 E-value=0.11 Score=52.98 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTT 274 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~ 274 (577)
..+.|.||+|+|||+|++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999987654
No 415
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.04 E-value=0.11 Score=46.07 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=19.1
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.|++.|++|+|||+|..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999874
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.02 E-value=0.13 Score=45.41 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.6
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 417
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.99 E-value=0.66 Score=51.30 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=23.8
Q ss_pred ceeEEecCCCCChHHHHHHH-HHHh--CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAV-ATEC--GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaL-A~el--~~~fv~v~~s 281 (577)
+.+|+.||+|+|||..+-.. ...+ +...+++...
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 57999999999999988533 3332 4555665554
No 418
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.94 E-value=0.13 Score=45.60 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|+|.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.89 E-value=0.13 Score=47.61 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..|+|.|.+|||||+|+..++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678889999999999999998863
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.85 E-value=0.14 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 421
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.84 E-value=0.078 Score=58.34 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCcc
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTL 283 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l 283 (577)
.+.|.|++|+|||+|+++||..++ ..+..++...+
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 478999999999999999999985 34544555443
No 422
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.79 E-value=0.099 Score=51.65 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|+++|+.-+.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987654
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.79 E-value=0.14 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
No 424
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.71 E-value=0.12 Score=46.22 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
..|++.|++|+|||+|..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999874
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.70 E-value=0.12 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred eEEecCCCCChHHHHHHHHHH
Q psy16204 250 ALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~e 270 (577)
+.|.||.|+|||+|++.|+.-
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999974
No 426
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.67 E-value=0.13 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|+|.|++|+|||+|.++++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999753
No 427
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.67 E-value=0.1 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|.|.|+.-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 367999999999999999987653
No 428
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.66 E-value=1.6 Score=45.48 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=24.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh--------CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC--------GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el--------~~~fv~v~~s 281 (577)
+.+|+.+|+|+|||..+-..+... +...+.+-..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 468999999999999877666544 4555555443
No 429
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.66 E-value=0.14 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.65 E-value=0.1 Score=46.05 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|||||+|+..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 431
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.58 E-value=0.13 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-+.|.||.|+|||+|++.|+.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999975
No 432
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.57 E-value=0.15 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999764
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.55 E-value=0.15 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998754
No 434
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.54 E-value=0.13 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..|++.|++|+|||+|+.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998654
No 435
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.54 E-value=0.88 Score=49.58 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-++|.|++|+|||.|+..++...
T Consensus 155 r~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred eeeeecCCCCChHHHHHHHHHhh
Confidence 48999999999999999998874
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.54 E-value=0.11 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.4
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|.+.|+.-..
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999987653
No 437
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.54 E-value=0.34 Score=45.98 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=26.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh--CCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC--GTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el--~~~fv~v~~s 281 (577)
..+++.|.+|+|||+++..+|..+ |..+..+++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457899999999999999999776 5555555543
No 438
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.52 E-value=0.15 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|||||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999988764
No 439
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.52 E-value=0.15 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.|+|.|++|+|||+|+.++...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 440
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=90.51 E-value=0.46 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=17.8
Q ss_pred ceeEEecCCCCChHHHHH-HHHHH
Q psy16204 248 KEALERHSHGTGKTMLAK-AVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk-aLA~e 270 (577)
+.+|+.+|+|+|||..+- .+...
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHHHH
Confidence 579999999999999754 34444
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.50 E-value=0.15 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|..++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998754
No 442
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.50 E-value=0.11 Score=50.52 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+.-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 443
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.50 E-value=0.14 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|.+++...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 444
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.48 E-value=0.52 Score=51.17 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=22.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
-++|.|++|+|||+|+..||+...+
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3688899999999999999999875
No 445
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.15 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 446
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.43 E-value=0.2 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=22.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.++++.||+|+|||+++++|+..+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999987764
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.42 E-value=0.15 Score=45.12 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
..|+|.|++|+|||+|+.++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999884
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.40 E-value=0.11 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|+++|+..+.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987653
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.31 E-value=0.16 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.30 E-value=0.15 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-|.|.|++|+|||++++.|++.+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998874
No 451
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.29 E-value=1.1 Score=52.86 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=18.3
Q ss_pred eeEEecCCCCChHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA 268 (577)
-++|.||.|+|||++.|.|+
T Consensus 791 i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 47899999999999999984
No 452
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.29 E-value=0.12 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|++.|+.-+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 368999999999999999987654
No 453
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.24 E-value=0.12 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|.+.|+..+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 368999999999999999987653
No 454
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.21 E-value=0.16 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|+|.|++|||||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999887753
No 455
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.16 E-value=0.15 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=19.7
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|+|.|++|+|||+|+.++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999874
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.16 E-value=0.17 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.13 E-value=0.12 Score=51.71 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.5
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|+++|+.-+.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 68999999999999999987653
No 458
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.13 E-value=0.27 Score=56.30 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204 226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+..++.+..++.. .-+|+.||||||||+++..++..+
T Consensus 358 n~~Q~~Av~~~l~~--------~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR--------PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CHHHHHHHHHHHTS--------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC--------CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555556555521 247899999999999888776654
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.12 E-value=0.17 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.10 E-value=0.12 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-+.|.||.|+|||+|++.|+.-+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999998754
No 461
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.09 E-value=0.099 Score=48.72 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=22.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.+.|.|++|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998764
No 462
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.08 E-value=0.16 Score=45.93 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|..++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 463
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.07 E-value=0.17 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|++.|++|+|||+|..++...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 464
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.06 E-value=0.17 Score=45.45 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|+|.|++|+|||+|..++..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999875
No 465
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.05 E-value=0.14 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..++|.||+|+|||+|+++|+....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 466
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.04 E-value=0.17 Score=50.23 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
.+.|.||+|+|||+|.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998753
No 467
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.03 E-value=0.16 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
No 468
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.02 E-value=0.17 Score=45.41 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.0
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|..++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999976
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.01 E-value=0.13 Score=51.18 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|++.|+..+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987654
No 470
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.99 E-value=0.086 Score=48.09 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=18.8
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.+.|.|++|+|||+|.++++.
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998863
No 471
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.98 E-value=0.15 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.248 Sum_probs=20.6
Q ss_pred cceeEEecCCCCChHHHHHHHHHH
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
...|++.|++|+|||+|.+++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998743
No 472
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.97 E-value=0.17 Score=45.99 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999753
No 473
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.89 E-value=0.12 Score=45.78 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.9
Q ss_pred ceeEEecCCCCChHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVA 268 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA 268 (577)
..|++.|++|+|||+|..++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999998875
No 474
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.87 E-value=0.13 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-+.|.||.|+|||+|++.|+..+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 368999999999999999987653
No 475
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.87 E-value=0.17 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|+.++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999999864
No 476
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.85 E-value=0.18 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|..++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 477
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.84 E-value=0.84 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=17.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
+.+++.+|+|+|||..+-..+..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999955444333
No 478
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.82 E-value=0.13 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.5
Q ss_pred eEEecCCCCChHHHHHHHHHHhC
Q psy16204 250 ALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
+.|.||.|+|||+|++.|+..+.
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 68999999999999999987653
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.79 E-value=0.17 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|..++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999874
No 480
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.74 E-value=0.4 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHh
Q psy16204 249 EALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el 271 (577)
-++|.|+.|+|||+|++.||..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 47899999999999999999775
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.71 E-value=0.14 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.9
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
+.|.||.|+|||+|++.|+.-.
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6799999999999999998654
No 482
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.71 E-value=0.2 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~e 270 (577)
.|+|.|.+|||||+|..++...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 483
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.65 E-value=1.7 Score=48.14 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=23.9
Q ss_pred ceeEEecCCCCChHHHHH-HHHHH---hCCeEEEEecC
Q psy16204 248 KEALERHSHGTGKTMLAK-AVATE---CGTTFFNVSSS 281 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAk-aLA~e---l~~~fv~v~~s 281 (577)
+.+|+.||+|+|||..+- .+... -+...+++...
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ 77 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPL 77 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 579999999999999874 33322 25566666654
No 484
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.62 E-value=0.18 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 485
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.60 E-value=0.93 Score=48.77 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=23.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS 280 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~ 280 (577)
+.+|+.+|+|+|||..+-.-+-..+...+.+..
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P 73 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP 73 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEECS
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEECC
Confidence 468999999999998666555444444455544
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.53 E-value=0.2 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
..|++.|++|+|||+|..++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 487
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.47 E-value=0.18 Score=45.12 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.9
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|..++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999974
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.47 E-value=0.2 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECGT 273 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~~ 273 (577)
.-|.|.|++|+|||++++.|++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34778899999999999999988654
No 489
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.39 E-value=0.2 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 490
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.39 E-value=0.18 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHh
Q psy16204 248 KEALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el 271 (577)
+-+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999988777654
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.38 E-value=0.2 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHhC
Q psy16204 249 EALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
-|.|.|++|+|||++++.|++.+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999998873
No 492
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.34 E-value=0.16 Score=46.65 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=18.9
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q psy16204 249 EALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 249 ~ILL~GPpGtGKT~LAkaLA~ 269 (577)
.|++.|++|+|||+|.+++..
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999863
No 493
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.31 E-value=0.2 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.7
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|...+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999874
No 494
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=89.27 E-value=1.1 Score=55.56 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=16.9
Q ss_pred ceeEEecCCCCChHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKA 266 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAka 266 (577)
+++|++-|+|+|||.+|-.
T Consensus 96 ~N~lv~APTGsGKTlva~l 114 (1724)
T 4f92_B 96 ENLLLCAPTGAGKTNVALM 114 (1724)
T ss_dssp CCEEEECCTTSCCHHHHHH
T ss_pred CcEEEEeCCcchHHHHHHH
Confidence 5899999999999998863
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.27 E-value=0.12 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.156 Sum_probs=9.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
-.|++.|++|+|||+|+.++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998864
No 496
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.23 E-value=0.14 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204 248 KEALERHSHGTGKTMLAKAVATECG 272 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~el~ 272 (577)
..+++.||+|+|||+|+++|+....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4689999999999999999998753
No 497
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.22 E-value=0.3 Score=49.25 Aligned_cols=36 Identities=25% Similarity=0.079 Sum_probs=28.4
Q ss_pred cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204 247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST 282 (577)
Q Consensus 247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~ 282 (577)
..-+++.|++|+|||+++..||..+ +..+..+++.-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3457889999999999999999776 56666666653
No 498
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.18 E-value=0.19 Score=45.00 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.5
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVAT 269 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~ 269 (577)
..|+|.|++|+|||+|..++..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998863
No 499
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.13 E-value=0.22 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEecCCCCChHHHHHHHHHHh
Q psy16204 250 ALERHSHGTGKTMLAKAVATEC 271 (577)
Q Consensus 250 ILL~GPpGtGKT~LAkaLA~el 271 (577)
.+|+||.|+|||+|..+|.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999998766
No 500
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.11 E-value=0.21 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q psy16204 248 KEALERHSHGTGKTMLAKAVATE 270 (577)
Q Consensus 248 k~ILL~GPpGtGKT~LAkaLA~e 270 (577)
-.|+|.|++|+|||+|++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998763
Done!