RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16204
(577 letters)
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 97.2 bits (242), Expect = 2e-21
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 53/192 (27%)
Query: 401 GRINKN--SLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457
G KN LF+ AR APS IFIDE+DSL S RG SE + RR +LL ++DG+ +
Sbjct: 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG-PSEDGSGRRVVGQLLTELDGIEKA 376
Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDV-- 488
E ++++AATN P ++ + L +
Sbjct: 377 --EG--VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAE 432
Query: 489 NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 548
++D +++++ EGY+G+DIA L R+AA+ ++R E VT DF
Sbjct: 433 DVDLEELAEITEGYSGADIAALVREAALEALR----------------EARRREVTLDDF 476
Query: 549 REAIARCRKSVT 560
+A+ + + SVT
Sbjct: 477 LDALKKIKPSVT 488
Score = 93.7 bits (233), Expect = 3e-20
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 199 FEPSLIETL-EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH- 256
FE +L + L + +L + +V + + GL EAK L+EA+ P PE F++ R
Sbjct: 219 FEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG 278
Query: 257 -------GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMV 302
GTGKT+LAKAVA E + F +V S L SK+ GESEK +R LFE
Sbjct: 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA 331
Score = 59.1 bits (143), Expect = 3e-09
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 40/173 (23%)
Query: 411 ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL------------ 458
A APS IFIDE+D+L R SD E RR A+LL MDGL
Sbjct: 72 AEKLAPSIIFIDEIDALAPKRSSDQG-EVERRVVAQLLALMDGLKRGQVIVIGATNRPDG 130
Query: 459 ---------YEDKIIMI----LAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 505
D+ I + A Q+ T + + ++ G +G+
Sbjct: 131 LDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMF---LGPPGTGKTLAARTVGKSGA 187
Query: 506 DIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558
D+ LA++AA+ +RR I + I VTE DF EA+ + S
Sbjct: 188 DLGALAKEAALRELRRAI----DLVGEYIG-------VTEDDFEEALKKVLPS 229
Score = 38.7 bits (90), Expect = 0.009
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 239 LPTIMPEFFKEALERHSH--------GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE 290
LP PE FK+ GTGKT+LA+A+A G F +++ + SKY GE
Sbjct: 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGE 60
Query: 291 SEKLVRLLFE 300
SE +R LFE
Sbjct: 61 SELRLRELFE 70
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 94.6 bits (235), Expect = 3e-20
Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 32/206 (15%)
Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457
G S + + +AR AP+ IF DE+D++ RG+ + + R +LL +MDG+
Sbjct: 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-- 586
Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNL 490
E ++++AATN P ++ + + + ++
Sbjct: 587 --ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV 644
Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDI-DLPVTEKDFR 549
D ++++M EGYTG+DI + R+AAM ++R I +++ ++E + DL V + F
Sbjct: 645 DLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFL 704
Query: 550 EAIARCRKSVTAHDLSKYDSWMNEFG 575
EA+ + + SV+ D+ +Y+ E
Sbjct: 705 EALKKVKPSVSKEDMLRYERLAKELK 730
Score = 81.9 bits (202), Expect = 3e-16
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 200 EPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------AL 251
EPS I +++L PNV+W+ + GL E K L+EA+ P PE F++ L
Sbjct: 436 EPSAI----REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVL 491
Query: 252 ERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
GTGKT+LAKAVATE G F V + SK+ GESEK +R +F
Sbjct: 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFR 540
Score = 78.0 bits (192), Expect = 5e-15
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 34/173 (19%)
Query: 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP- 473
APS IFIDE+D++ R + E +R A+LL MDGL ++I+I ATN P
Sbjct: 271 APSIIFIDEIDAIAPKR-EEVTGEVEKRVVAQLLTLMDGLKG---RGRVIVI-GATNRPD 325
Query: 474 --------------------------YQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI 507
++L + + + ++D K++++ G+ G+D+
Sbjct: 326 ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADL 385
Query: 508 ANLARDAAMMSIRRKI-MGQTPAQIKEIKQEDID-LPVTEKDFREAIARCRKS 558
A LA++AAM ++RR I G+ + +EI E + L VT KDF EA+ S
Sbjct: 386 AALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438
Score = 69.6 bits (170), Expect = 2e-12
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
P V + + GL EAK ++E + LP PE F+ L GTGKT+LAKAV
Sbjct: 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAV 232
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A E G F +++ + SKY GESE+ +R +F+
Sbjct: 233 ANEAGAYFISINGPEIMSKYYGESEERLREIFK 265
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 78.8 bits (195), Expect = 1e-15
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
P+V + + GL E ++E + LP PE F+E L GTGKT+LAKAV
Sbjct: 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAV 205
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A + TF V S L KY GE +LVR LFE+
Sbjct: 206 ANQTDATFIRVVGSELVQKYIGEGARLVRELFEL 239
Score = 70.8 bits (174), Expect = 5e-13
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 57/180 (31%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKI 463
LF+ AR APS IFIDE+D++ + R DS R R ELL Q+DG +
Sbjct: 236 LFELAREKAPSIIFIDEIDAIGAKR-FDSGTSGDREVQRTMLELLNQLDGFDPR----GN 290
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
+ ++ ATN P ++L + + + ++D ++
Sbjct: 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA 350
Query: 497 KMLEGYTGSDIANLARDAAMMSIR--RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
++ EG++G+D+ + +A M +IR R VT +DF +A+ +
Sbjct: 351 RLTEGFSGADLKAICTEAGMFAIRERRDE-------------------VTMEDFLKAVEK 391
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 78.3 bits (194), Expect = 2e-15
Identities = 41/94 (43%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
PNV + + GL E ++EA+ LP PE F+E L GTGKT+LAKAV
Sbjct: 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 185
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A E TF V S L K+ GE +LVR LFE+
Sbjct: 186 AHETNATFIRVVGSELVQKFIGEGARLVRELFEL 219
Score = 72.2 bits (178), Expect = 2e-13
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 53/176 (30%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQMDGLNSSLYEDKI 463
LF+ AR APS IFIDE+D++ + R G+ + E R +LL +MDG + KI
Sbjct: 216 LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTL-MQLLAEMDGFD-PRGNVKI 273
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
I AATN ++L + + + ++D +++
Sbjct: 274 I---AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA 330
Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI 552
++ EG +G+D+ + +A M +IR + VT +DF +AI
Sbjct: 331 ELTEGASGADLKAICTEAGMFAIRDD---------RTE--------VTMEDFLKAI 369
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 72.6 bits (179), Expect = 2e-15
Identities = 29/47 (61%), Positives = 31/47 (65%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVS 303
GTGKT LAKAVA E G F +S S L SKY GESEK +R LFE
Sbjct: 8 GTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAK 54
Score = 62.2 bits (152), Expect = 9e-12
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA 469
A+ AP IFIDE+D+L RGS SRR +LL ++DG SS ++++AA
Sbjct: 52 AAKKLAPCVIFIDEIDALAGSRGS-GGDSESRRVVNQLLTELDGFTSS---LSKVIVIAA 107
Query: 470 TNHPYQL 476
TN P +L
Sbjct: 108 TNRPDKL 114
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 74.1 bits (182), Expect = 4e-14
Identities = 41/94 (43%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
PNV + + GL E ++EA+ LP PE F+E L GTGKT+LAKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A E TF V S L KY GE +LVR +FE+
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFEL 210
Score = 52.5 bits (126), Expect = 3e-07
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 36/145 (24%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQMDGLNSSLYEDKI 463
+F+ A+ APS IFIDE+D++ + R G+ + E R +LL ++DG + K+
Sbjct: 207 IFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTL-MQLLAELDGFD-PRGNVKV 264
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
I AATN P ++L + + + ++D I+
Sbjct: 265 I---AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA 321
Query: 497 KMLEGYTGSDIANLARDAAMMSIRR 521
KM EG +G+D+ + +A M +IR
Sbjct: 322 KMTEGASGADLKAICTEAGMFAIRE 346
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 62.5 bits (152), Expect = 2e-10
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 202 SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALER 253
S I+ L+ P+V ++ + GL K ++EA+ LP PE +++ L
Sbjct: 129 SSIQLLQMS---EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLY 185
Query: 254 HSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
GTGKTMLAKAVA TF V S KY GE ++VR +F +
Sbjct: 186 GPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRL 233
Score = 52.8 bits (127), Expect = 3e-07
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 46/178 (25%)
Query: 376 SMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR---- 431
+ + VV + F Q + G R+ ++ AR APS IFIDEVDS+ + R
Sbjct: 206 TFIRVVGSEFV-------QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 258
Query: 432 -GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL 490
G+D E +R ELL QMDG + + K+IM ATN L L +D +
Sbjct: 259 TGADRE---VQRILLELLNQMDGFDQTT-NVKVIM---ATNRADTLDPALLRPGRLDRKI 311
Query: 491 DF------HK-------ISKM-------LEGY-------TGSDIANLARDAAMMSIRR 521
+F K SKM LE + + +DIA + ++A M ++R+
Sbjct: 312 EFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 63.1 bits (154), Expect = 2e-10
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 51/177 (28%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKII 464
LF QA+ AP IFIDE+D++ RG+ ++ + +LL++MDG ++ +I
Sbjct: 139 LFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN---TGVI 195
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
++AATN P ++L + + + ++D +++
Sbjct: 196 -VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
G++G+D+ANL +AA+++ R+ +T +T D EAI R
Sbjct: 255 RTPGFSGADLANLLNEAALLAARK---NKT--------------EITMNDIEEAIDR 294
Score = 51.5 bits (124), Expect = 7e-07
Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGTGKT 261
P V + VAG+ EAK L E + +F K L GTGKT
Sbjct: 50 PKVTFKDVAGIDEAKEELMEIV-------DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT 102
Query: 262 MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
+LAKAVA E G FF++S S + G VR LFE
Sbjct: 103 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 141
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 61.7 bits (150), Expect = 4e-10
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
P + + GL + ++EA+ LP PE + + + GTGKT+LAKAV
Sbjct: 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAV 237
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
A E TF V S L KY G+ KLVR LF
Sbjct: 238 ANETSATFLRVVGSELIQKYLGDGPKLVRELF 269
Score = 39.8 bits (93), Expect = 0.004
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 415 APSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 471
APS +FIDE+D++ + R S E E R ELL Q+DG +S + K+IM ATN
Sbjct: 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTM-LELLNQLDGFDSR-GDVKVIM---ATN 330
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 57.8 bits (140), Expect = 7e-09
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 199 FEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------A 250
FE +E +L+ P+V + + GL +++A+ LP + PE ++E
Sbjct: 160 FEAIPRTEVEDLVLEEVPDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGV 219
Query: 251 LERHSHGTGKTMLAKAVATECGTT----------FFNVSSSTLTSKYRGESEKLVRLLFE 300
L G GKT++AKAVA F N+ L +KY GE+E+ +RL+F+
Sbjct: 220 LLYGPPGCGKTLIAKAVANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQ 279
Score = 29.7 bits (67), Expect = 5.7
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 410 QARCYA----PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIM 465
+AR A P +F DE+DSL RGS + +LL ++DG+ S D +I+
Sbjct: 280 RAREKASEGRPVIVFFDEMDSLFRTRGSGVSSDVETTVVPQLLAEIDGVESL---DNVIV 336
Query: 466 ILAATN 471
I A+N
Sbjct: 337 I-GASN 341
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 57.0 bits (137), Expect = 2e-08
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 33/140 (23%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
QA+ AP IFIDE+D++ RG+ H+ + ++L++MDG ++ I+++
Sbjct: 239 QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVI 294
Query: 468 AATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLE 500
AATN P Q+L + + V + ++D I++
Sbjct: 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTP 354
Query: 501 GYTGSDIANLARDAAMMSIR 520
G++G+D+ANL +AA+ + R
Sbjct: 355 GFSGADLANLVNEAALFAAR 374
Score = 41.2 bits (96), Expect = 0.002
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
GTGKT+LAKA+A E FF +S S + G VR +FE
Sbjct: 195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 238
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 55.4 bits (134), Expect = 5e-08
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 56/178 (31%)
Query: 409 FQARCYAPSTIFIDEVDSL-----CSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKI 463
QA+ AP IFIDE+D++ + G + E E + +LL++MDG + +
Sbjct: 236 EQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQT---LNQLLVEMDGFGGN----EG 288
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
++++AATN P Q+L + + + ++D KI+
Sbjct: 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA 348
Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
+ G++G+D+ANL +AA+++ RR K+E +T +D EAI R
Sbjct: 349 RGTPGFSGADLANLLNEAALLAARRN------------KKE-----ITMRDIEEAIDR 389
Score = 45.4 bits (108), Expect = 8e-05
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA---LERH-----SHGTG 259
K L++ V + VAG+ EAK L E +V P+ ++ + + GTG
Sbjct: 137 AKLYLEDQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTG 195
Query: 260 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
KT+LAKAVA E G FF++S S + G VR LFE
Sbjct: 196 KTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 49.0 bits (117), Expect = 3e-06
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIM--PEFFKEALERH-----SHGTGKTMLAKAVA 268
++ + V G EAK ++ ++ + PE F + ++ GTGKTM+AKA+A
Sbjct: 116 SDITLDDVIGQEEAK---RKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALA 172
Query: 269 TECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVS 303
E V ++ L ++ G+ + + L+E
Sbjct: 173 NEAKVPLLLVKATELIGEHVGDGARRIHELYERAR 207
Score = 38.6 bits (90), Expect = 0.007
Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 50/172 (29%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLC------SMRGSDSEHEASRRFKAELLIQMDGLNSSLYE 460
L++ AR AP +FIDE+D++ +RG SE + LL ++DG+ E
Sbjct: 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNA------LLTELDGIK----E 251
Query: 461 DKIIMILAATNHP-------------------------YQLLTLCLEGVVIDVNLDFHKI 495
++ ++ +AATN P ++L + + V+ D +
Sbjct: 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYL 311
Query: 496 SKMLEGYTGSDIANLARDAAMM--------SIRRKIMGQTPAQIKEIKQEDI 539
+ +G +G DI A+ + R+ + + + ++ +
Sbjct: 312 AAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKERKRRAPRP 363
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 48.5 bits (116), Expect = 7e-06
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVAT 269
+ + +AG+ EAK +E + PE F K L GTGKT+LAKA+A
Sbjct: 180 ITFRDIAGIEEAKEEFEEVVSFLK-KPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
E FF++S S + G VR LF+
Sbjct: 239 EAEVPFFSISGSEFVEMFVGVGAARVRDLFK 269
Score = 48.5 bits (116), Expect = 8e-06
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 34/156 (21%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
LF +A+ +P +FIDE+D++ RG+ ++ + +LL +MDG +K +
Sbjct: 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK----GNKGV 322
Query: 465 MILAATNHPYQLLTLCLEGVVID----VNLDF----------HKISKMLE---------- 500
+++AATN L L D V+L H +K L
Sbjct: 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIAR 382
Query: 501 ---GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 533
G++G+D+ANL +AA+++ RRK T +I
Sbjct: 383 RTPGFSGADLANLLNEAAILTARRKKATITMKEIDT 418
>gnl|CDD|204202 pfam09336, Vps4_C, Vps4 C terminal oligomerisation domain. This
domain is found at the C terminal of ATPase proteins
involved in vacuolar sorting. It forms an alpha helix
structure and is required for oligomerisation.
Length = 62
Score = 42.2 bits (100), Expect = 2e-05
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 542 PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
P+T KDF +A+A + +V+ DL K++ + NEFG
Sbjct: 29 PLTMKDFIKALATTKPTVSKDDLEKHEEFTNEFG 62
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 41.7 bits (98), Expect = 2e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 257 GTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
GTGKT LA+A+A E G F +++S L L+ +
Sbjct: 29 GTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76
Score = 38.7 bits (90), Expect = 0.002
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYED 461
+ + A P +FIDE+DSL SR + LL ++ LN +
Sbjct: 71 FLVRLLFELAEKAKPGVLFIDEIDSL------------SRGAQNALLRVLETLNDLRIDR 118
Query: 462 KIIMILAATNHPYQLL 477
+ + ++ ATN P
Sbjct: 119 ENVRVIGATNRPLLGD 134
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 32.4 bits (74), Expect = 0.64
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 256 HGTGKTMLAKAVATECGTTFFNVS 279
G GKT+LA+A+A G F +
Sbjct: 52 PGVGKTLLARALARALGLPFVRIQ 75
>gnl|CDD|192778 pfam11582, DUF3240, Protein of unknown function (DUF3240). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 101
Score = 30.0 bits (68), Expect = 0.88
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 473 PYQLLTLC----LEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP 528
LLTL L+ ++D ++ + + G+T + A R+ A+ +I ++ G
Sbjct: 2 QSVLLTLIAPRELKDDLVDCLIEL---TDAVSGFTLLEAAGHGREHALFTIAEQVRGYRD 58
Query: 529 AQIKEIKQEDIDLPVTEKDFREAIARCR 556
EI + DL R A A
Sbjct: 59 MVKVEIVLPEADLERLLAALRAANAHTP 86
>gnl|CDD|241528 cd13377, PH_SynGAP_2, Synaptic Ras-GTPase activating protein
Pleckstrin homology (PH) domain. SynGAP is a member of
the RasSynGAP family along with DOC-2/DAB2-interacting
protein (DAB2IP) and neuronal growth-associated protein
(nGAP/RASAL2). SynGAP, a neuronal Ras-GAP, has been
shown display both Ras-GAP activity and Ras-related
protein (Rap)-GAP activity. Saccharomyces cerevisiae
Bud2 and GAP1 members CAPRI (Ca2+-promoted Ras
inactivator) and RASAL (Ras-GTPase-activating-like
protein) also possess this dual activity. Human
DOC-2/DAB2-interacting protein (DAB2IP) is encoded by a
tumor suppressor gene and a newly recognized member of
the Ras-GTPase-activating family. Members here include
nematodes, insects, arthropods, and cnidarians. PH
domains are only found in eukaryotes. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 129
Score = 30.2 bits (68), Expect = 1.2
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 126 SCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHE 177
S + S ++S K RK K A K+ A +S SHE
Sbjct: 3 SPRKSRVHRPVLNSPSRDSSFKQKPKRRKSATKLARSKVQATGRLRSSRSHE 54
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 31.1 bits (71), Expect = 1.8
Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 10/145 (6%)
Query: 53 MNANNTRRQQSKQQHVTPQMLY----RAKSQATYQEEKK--PSANKEPDSIADRWINSLR 106
A+ ++++ ++K T +E K+ S K P+ I I L
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF-LS 60
Query: 107 KRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERK---LGFKPAVKK 163
+ + IP + + K S+KK K L +
Sbjct: 61 GMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Query: 164 IIAANASENSVSHEANEKDGVFRQD 188
+ + + + ++ D D
Sbjct: 121 VKDIDVLNQADDDDDDDDDDDLDDD 145
>gnl|CDD|181384 PRK08319, PRK08319, cobalt transport protein CbiM; Validated.
Length = 224
Score = 30.2 bits (69), Expect = 2.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 102 INSLRKRDPEIQPTLPAI-----------IPSRSRSCSHPT 131
+ + K DPE +P L IPS + SCSHPT
Sbjct: 31 LRKIVKEDPEQKPLLALAGAFIFVLSALKIPSVTGSCSHPT 71
>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 30.3 bits (69), Expect = 2.6
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 14/54 (25%)
Query: 242 IMPEFFKEA--------------LERHSHGTGKTMLAKAVATECGTTFFNVSSS 281
I+P KE L S GTGKT +AKA+ E G V+ S
Sbjct: 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77
>gnl|CDD|221968 pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This
family includes enzymes related to cytidylate kinase.
Length = 176
Score = 29.5 bits (67), Expect = 3.3
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYL 316
G+G + K +A + G +++ +K G SE+ E N Y
Sbjct: 9 GSGGREIGKKLAEKLGIPYYDREILDEAAKESGISEEEFERYDEKA-------PNSLLYS 61
Query: 317 VGVLNGEPTTTFAYNKQILQMNRRVLK 343
+ + + ++ + +V++
Sbjct: 62 IAAGFYRG-EDISSDDKLFKAQSKVIR 87
>gnl|CDD|226354 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 29.9 bits (68), Expect = 3.3
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 36/133 (27%)
Query: 273 TTFFNVSSSTLT----SKYR--GESEKLV-RLLFEMVSFLVGLHSNKTFY----LVGVLN 321
T V+ TL S+YR G L L+ +M + L + Y L+G+LN
Sbjct: 85 TAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGVAALIA---LYVLLKLLGLLN 141
Query: 322 GEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPW------ 375
AY + MN ++KG T P + + +DG +
Sbjct: 142 TLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDE--------AAKIDGA--TRFQIFRRI 191
Query: 376 ------SMVAVVA 382
++AVVA
Sbjct: 192 LLPLSKPILAVVA 204
>gnl|CDD|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.
Length = 795
Score = 29.7 bits (68), Expect = 4.7
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT-PAQI-KEIKQEDIDLPVTEKDFREA 551
KI ++L+G D+ LA+ A IR+ I+ P + +EI++ L + A
Sbjct: 65 KIYELLDGLDVDDVDALAKAGA--QIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVA 122
Query: 552 IARCRKSVTAHDL 564
+ R S TA DL
Sbjct: 123 V---RSSATAEDL 132
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 28.5 bits (63), Expect = 5.0
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 17/63 (26%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSS-----------------STLTSKYRGESEKLVRLLF 299
G+GKT LA+A+A E G V K G E +RL
Sbjct: 12 GSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL 71
Query: 300 EMV 302
+
Sbjct: 72 ALA 74
Score = 28.5 bits (63), Expect = 5.2
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ 475
P + +DE+ SL D+E EA EL + + L +K + ++ TN
Sbjct: 79 PDVLILDEITSLL-----DAEQEALLLLLEELRLLL-----LLKSEKNLTVILTTNDEKD 128
Query: 476 LLTLCL 481
L L
Sbjct: 129 LGPALL 134
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 29.7 bits (68), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSST 282
GTGKT LA+ +A F +S+ T
Sbjct: 46 GTGKTTLARIIAGATDAPFEALSAVT 71
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 29.1 bits (65), Expect = 5.8
Identities = 48/194 (24%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 274 TFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQ 333
+ SSS SK R S RL VS G S LNG T
Sbjct: 54 RNTSSSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPS-----AAASLNGSLATAST---- 104
Query: 334 ILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC 393
+ + TT+ + +GPS+ S M D GKKG
Sbjct: 105 --SGSSSPSRSRRTTSSDLSSG--NGPSVLSFMADVKR----------------GKKGPS 144
Query: 394 QSHEGHSGRINKNSLFQARC---YAPSTIFIDEV---DSLCSMRGSDSE---HEASRRFK 444
+ + H R+ N L Q R A + + + ++ L + SE A +R K
Sbjct: 145 KIEDAHQLRLLYNRLLQWRFVNARAEAAMAVQKLNAEKQLFNAWLRISELRNSVAMKRIK 204
Query: 445 AELLIQMDGLNSSL 458
+ L Q LNS L
Sbjct: 205 LQRLRQELKLNSVL 218
>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 29.2 bits (66), Expect = 6.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 257 GTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRLL 298
GTGKT LA +A E G F +S S + S ++E L + L
Sbjct: 75 GTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 29.3 bits (65), Expect = 6.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 70 PQMLYRAKSQA-TYQEEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCS 128
PQ+L +A+++ Y +EK + E D + +L K I+P +P +IP R+C
Sbjct: 320 PQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIP---RACI 376
Query: 129 HPTTLKKTTRSFGSNTSASS---TKKERKLGFKP 159
T + G+ + ++ ++ E++ G P
Sbjct: 377 QDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNP 410
>gnl|CDD|233159 TIGR00867, deg-1, degenerin. The Epithelial Na+ Channel (ENaC)
Family (TC 1.A.06)The ENaC family consists of sodium
channels from animals and has no recognizable homologues
in other eukaryotes or bacteria. The vertebrate ENaC
proteins from epithelial cells cluster tightly together
on the phylogenetic tree: voltage-insensitive ENaC
homologues are also found in the brain. Eleven sequenced
C. elegans proteins, including the degenerins, are
distantly related to the vertebrate proteins as well as
to each other. At least some ofthese proteins form part
of a mechano-transducing complex for touch sensitivity.
Other members of the ENaC family, the acid-sensing ion
channels, ASIC1-3,are homo- or hetero-oligomeric
neuronal H+-gated channels that mediate pain sensation
in response to tissue acidosis. The homologous Helix
aspersa(FMRF-amide)-activated Na+ channel is the first
peptide neurotransmitter-gated ionotropic receptor to be
sequenced.Mammalian ENaC is important for the
maintenance of Na+ balance and the regulation of blood
pressure. Three homologous ENaC subunits, a, b and g,
havebeen shown to assemble to form the highly
Na+-selective channel.This model is designed from the
invertebrate members of the ENaC family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 600
Score = 29.4 bits (66), Expect = 6.6
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 4/114 (3%)
Query: 9 PFYYSTASPNPGLNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHV 68
P+ YS P ++ D I S T R + + + +
Sbjct: 76 PYKYSLVRSVPEISETLDAFDRAIGASNKSEGDELELITERKLHSKTRRQKLKAKGAPEL 135
Query: 69 TPQMLYRAKSQATYQEEK----KPSANKEPDSIADRWINSLRKRDPEIQPTLPA 118
M SQ T E+ K + EP R I + + + P P
Sbjct: 136 EDGMYEPVFSQCTCDEQGMGECKSQRSAEPRGHTSRCICAYDRVTGDAWPCFPY 189
>gnl|CDD|237495 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
Length = 637
Score = 29.2 bits (66), Expect = 7.6
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 5/21 (23%)
Query: 253 RH-----SHGTGKTMLAKAVA 268
RH S GTGK+MLAKA+A
Sbjct: 51 RHVMMIGSPGTGKSMLAKAMA 71
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 28.8 bits (65), Expect = 7.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
GTGK++ AKA+A + + L GESE +R +M+
Sbjct: 269 GTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMR---QMIRI 313
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional.
Length = 296
Score = 28.8 bits (64), Expect = 7.8
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 313 TFYLVGVLNGEPTTTFAYNKQI-LQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLG 371
TFYL+ +++G T A + L + VL L AP + + G S+ MV G
Sbjct: 188 TFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCY 247
Query: 372 KGPW 375
KG W
Sbjct: 248 KGIW 251
>gnl|CDD|225080 COG2169, Ada, Adenosine deaminase [Nucleotide transport and
metabolism].
Length = 187
Score = 28.5 bits (64), Expect = 7.9
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 503 TGSDIANLARDAAMMSIRR------KIMGQTPAQIKE 533
G+ + + DA S R KI+G TP + +
Sbjct: 144 MGASVTDAQIDAGFESSSRFYDAFSKILGMTPTKFRH 180
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 28.5 bits (64), Expect = 8.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 52 RMNANNTRRQ-QSKQQHVTPQ---MLYRAKSQATYQEEKK---PSANKEPDSIADRWINS 104
+ A RR+ + K + + Q +L +AK +A Q E++ A +E D I ++W +
Sbjct: 52 KREAEQERREYEEKNEELDQQREVLLTKAKEEA--QAERQRLLDEAREEADEIREKWQEA 109
Query: 105 LR 106
LR
Sbjct: 110 LR 111
>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
a serine protease inhibitor that belongs to the
ov-serpin branch of the serpin superfamily. It is is an
effective inhibitor of urinary plasminogen activator
(urokinase or uPA) and is involved in cell
differentiation, tissue growth and regeneration.
Length = 380
Score = 28.6 bits (64), Expect = 9.5
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 24/86 (27%)
Query: 41 FTKITTTRRPVRMNANNTRRQQSKQQHVTPQMLY-RAKSQATYQEEKK------PSANKE 93
F K T RP R+N N T+ QM++ + K TY EE K P KE
Sbjct: 176 FLKENTRERPFRLNKNTTK---------PVQMMFLKKKFPITYIEELKAQVLELPYVGKE 226
Query: 94 -------PDSIADRWINSLRKRDPEI 112
PD I D L K + E+
Sbjct: 227 LSMFILLPDEIEDV-TTGLEKLEKEL 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,550,046
Number of extensions: 2718962
Number of successful extensions: 2591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2557
Number of HSP's successfully gapped: 68
Length of query: 577
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 475
Effective length of database: 6,413,494
Effective search space: 3046409650
Effective search space used: 3046409650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.1 bits)