RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16204
(577 letters)
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 189 bits (482), Expect = 7e-56
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 34/196 (17%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
LF AR PS IFIDEVDSL S R S SEHEASRR K E L++ DGL + + I++
Sbjct: 105 LFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGN-PDGDRIVV 162
Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDVN-LDFHKISKMLE 500
LAATN P +L L L+ ++ +++K+ +
Sbjct: 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD 222
Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVT 560
GY+GSD+ LA+DAA+ IR Q+K + + +TE+DF ++ R R+SV
Sbjct: 223 GYSGSDLTALAKDAALEPIRELN----VEQVKCLDISAMR-AITEQDFHSSLKRIRRSVA 277
Query: 561 AHDLSKYDSWMNEFGS 576
L+ Y+ W ++G
Sbjct: 278 PQSLNSYEKWSQDYGD 293
Score = 148 bits (375), Expect = 1e-40
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 7/106 (6%)
Query: 203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH------ 256
L++ + +I++ V+W +AG AK LQE ++LP++ PE F
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 257 -GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
G GKT+LA+AVATEC TF N+S+++LTSKY G+ EKLVR LF +
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAV 108
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 187 bits (477), Expect = 2e-54
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 35/197 (17%)
Query: 407 SLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIM 465
+LF ARC P+ IFIDE+DSL S RG EHE+SRR K E L+Q+DG +S + I+
Sbjct: 167 ALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTS--SEDRIL 223
Query: 466 ILAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKML 499
++ ATN P ++ + + + + +I +
Sbjct: 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS 283
Query: 500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 559
+ ++G+D+ L R+A++ IR A I I + + P+ DF A R SV
Sbjct: 284 DAFSGADMTQLCREASLGPIRSLQ----TADIATITPDQVR-PIAYIDFENAFRTVRPSV 338
Query: 560 TAHDLSKYDSWMNEFGS 576
+ DL Y++W FG
Sbjct: 339 SPKDLELYENWNKTFGC 355
Score = 157 bits (399), Expect = 2e-43
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 142 SNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEP 201
S+ T+ P + K + + E++ EP
Sbjct: 8 SSGVDLGTENLYFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAHPVDERL---KNLEP 64
Query: 202 SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS------ 255
+IE + +I+ + P V W +AG+ AKA ++E +V P + P+ F
Sbjct: 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFG 124
Query: 256 -HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
GTGKT++ K +A++ G TFF++S+S+LTSK+ GE EK+VR LF +
Sbjct: 125 PPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAV 171
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 186 bits (475), Expect = 6e-54
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 35/196 (17%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
LF AR PS IFID+VDSL R EH+ASRR K E LI+ DG+ S+ D +++
Sbjct: 199 LFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSA--GDDRVLV 255
Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKMLE 500
+ ATN P +L L L + + ++++M +
Sbjct: 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTD 315
Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVT 560
GY+GSD+ LA+DAA+ IR P Q+K + ++ + DF E++ + ++SV+
Sbjct: 316 GYSGSDLTALAKDAALGPIRELK----PEQVKNMSASEMR-NIRLSDFTESLKKIKRSVS 370
Query: 561 AHDLSKYDSWMNEFGS 576
L Y W +FG
Sbjct: 371 PQTLEAYIRWNKDFGD 386
Score = 166 bits (422), Expect = 3e-46
Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 117 PAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSH 176
P S S S + G + + S + G K + +
Sbjct: 11 PLTHTSNSLPRSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNR 70
Query: 177 EANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEA 236
++ + + +L + +I+ N V+++ +AG AK LQE
Sbjct: 71 TNKPSTPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEI 130
Query: 237 MVLPTIMPEFFKEALERHS-------HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289
++LP++ PE F G GKTMLAKAVA E TFFN+S+++LTSKY G
Sbjct: 131 VILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVG 190
Query: 290 ESEKLVRLLFEM 301
E EKLVR LF +
Sbjct: 191 EGEKLVRALFAV 202
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 182 bits (464), Expect = 6e-53
Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 63/228 (27%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
LFQ AR PS IFIDE+DSLC R ++E EA+RR K E L+QM G+ + I++
Sbjct: 97 LFQLARENKPSIIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVD---NDGILV 152
Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKMLE 500
L ATN P+ L L L + DF ++ + +
Sbjct: 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTD 212
Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL------------------- 541
GY+G+DI+ + RDA M +R+ +++ + D +
Sbjct: 213 GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEM 272
Query: 542 -------------PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
V+ D +++ + +V HDL K + +FG
Sbjct: 273 TWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320
Score = 142 bits (359), Expect = 4e-38
Identities = 48/99 (48%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
I+ PNV+W+ VAGL AK L+EA++LP P F GTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 264 AKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
AKAVATE +TFF++SSS L SK+ GESEKLV+ LF++
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 100
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 180 bits (459), Expect = 3e-52
Identities = 65/222 (29%), Positives = 94/222 (42%), Gaps = 57/222 (25%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
LF AR PS IFID+VD+L RG + E EASRR K ELL+QM+G+ + + + +++
Sbjct: 102 LFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN---DSQGVLV 157
Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDVN-LDFHKISKMLE 500
L ATN P+QL + + + D+ + M E
Sbjct: 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTE 217
Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL------------------- 541
GY+GSDIA + +DA M IR+ + E L
Sbjct: 218 GYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIE 277
Query: 542 -------PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
+T KDF +AI R +V DL K + + +FG
Sbjct: 278 ADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319
Score = 145 bits (367), Expect = 4e-39
Identities = 53/98 (54%), Positives = 63/98 (64%), Gaps = 7/98 (7%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
IL PNV+W VAGL AK L+EA++LP P FK + S GTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
AKAVATE +TFF+VSSS L SK+ GESEKLV+ LF M
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAM 105
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 177 bits (450), Expect = 1e-50
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 57/222 (25%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
LF AR PS IFID+VD+L RG + E EASRR K ELL+QM+G+ + + + +++
Sbjct: 135 LFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN---DSQGVLV 190
Query: 467 LAATNHPYQL-------------------------LTLCLEGVV-IDVNLDFHKISKMLE 500
L ATN P+QL + + + D+ + M E
Sbjct: 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTE 250
Query: 501 GYTGSDIANLARDAAMMSIRRKI-------------------------MGQTPAQIKEIK 535
GY+GSDIA + +DA M IR+ G +I+
Sbjct: 251 GYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIE 310
Query: 536 QEDIDL-PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
+++ +T KDF +AI R +V DL K + + +FG
Sbjct: 311 ADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352
Score = 141 bits (358), Expect = 1e-37
Identities = 57/134 (42%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 175 SHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQ 234
S + G + E L L IL PNV+W VAGL AK L+
Sbjct: 5 SAGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALK 64
Query: 235 EAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287
EA++LP P F L GTGK+ LAKAVATE +TFF+VSSS L SK+
Sbjct: 65 EAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124
Query: 288 RGESEKLVRLLFEM 301
GESEKLV+ LF M
Sbjct: 125 MGESEKLVKQLFAM 138
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 174 bits (442), Expect = 1e-48
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 63/228 (27%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
LFQ AR PS IFIDE+DSLC R ++E EA+RR K E L+QM G+ ++ I++
Sbjct: 219 LFQLARENKPSIIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGV---DNDGILV 274
Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKMLE 500
L ATN P+ L L L + DF ++ + +
Sbjct: 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTD 334
Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL------------------- 541
GY+G+DI+ + RDA M +R+ +++ + D +
Sbjct: 335 GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEM 394
Query: 542 -------------PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
V+ D +++ + +V DL K + +FG
Sbjct: 395 TWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442
Score = 138 bits (350), Expect = 7e-36
Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 128 SHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQ 187
+ K++ R+ + + K + L K + V + N+ DG
Sbjct: 49 AQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDG---- 104
Query: 188 DIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF 247
+ + L L+ I+ PNV+W+ VAGL AK L+EA++LP P F
Sbjct: 105 ----EAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF 160
Query: 248 -------KEALERHSHGTGKTMLAKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLF 299
+ L GTGK+ LAKAVATE +TFF++SSS L SK+ GESEKLV+ LF
Sbjct: 161 TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLF 220
Query: 300 EM 301
++
Sbjct: 221 QL 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 125 bits (315), Expect = 3e-32
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 42/205 (20%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKII 464
+F AR AP +F DE+DS+ RG + A+ R ++L +MDG+++ K +
Sbjct: 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNV 155
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
I+ ATN P +L L + ++D ++K
Sbjct: 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 215
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKI--------MGQTPAQIKEIKQEDIDLPVTEKDFR 549
M G++G+D+ + + A ++IR I QT E++++D + F
Sbjct: 216 MTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 275
Query: 550 EAIARCRKSVTAHDLSKYDSWMNEF 574
EA+ R+SV+ +D+ KY+ +
Sbjct: 276 EAMRFARRSVSDNDIRKYEMFAQTL 300
Score = 95.8 bits (239), Expect = 5e-22
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH--------GTGKTMLAKAV 267
P V W + GL + K LQE + P P+ F + S G GKT+LAKA+
Sbjct: 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A EC F ++ L + + GESE VR +F+
Sbjct: 70 ANECQANFISIKGPELLTMWFGESEANVREIFD 102
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 129 bits (327), Expect = 8e-32
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 42/205 (20%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKII 464
+F AR AP +F DE+DS+ RG + A+ R ++L +MDG+++ K +
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNV 617
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
I+ ATN P +L L + ++D ++K
Sbjct: 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKI--------MGQTPAQIKEIKQEDIDLPVTEKDFR 549
M G++G+D+ + + A ++IR I QT E++++D + F
Sbjct: 678 MTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 737
Query: 550 EAIARCRKSVTAHDLSKYDSWMNEF 574
EA+ R+SV+ +D+ KY+ +
Sbjct: 738 EAMRFARRSVSDNDIRKYEMFAQTL 762
Score = 104 bits (261), Expect = 1e-23
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA 469
+A AP+ IFIDE+D++ R E RR ++LL MDGL ++++AA
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQ----RAHVIVMAA 346
Query: 470 TNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLEGY 502
TN P ++L + + + + ++D +++ G+
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 503 TGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558
G+D+A L +AA+ +IR+K+ + L VT DFR A+++ S
Sbjct: 407 VGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
Score = 99.1 bits (247), Expect = 6e-22
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 160 AVKKII-AANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNV 218
A++K + + + ++ E V D R + + PS + ++ P V
Sbjct: 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL---SQSNPSALRETVVEV----PQV 474
Query: 219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH--------GTGKTMLAKAVATE 270
W + GL + K LQE + P P+ F + S G GKT+LAKA+A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 271 CGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
C F ++ L + + GESE VR +F+
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFD 564
Score = 87.5 bits (217), Expect = 3e-18
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 200 EPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS---- 255
EP E E+ + V ++ V G + A ++E + LP P FK +
Sbjct: 187 EPIKREDEEESL----NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGIL 242
Query: 256 ----HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
GTGKT++A+AVA E G FF ++ + SK GESE +R FE
Sbjct: 243 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 111 bits (281), Expect = 9e-28
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 44/189 (23%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
+FQ A+ AP IF DEVD+LC R AS R +LL +MDGL + + + I
Sbjct: 95 VFQRAKNSAPCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEAR----QQVFI 149
Query: 467 LAATNHP------------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
+AATN P + +T +D +++ I+
Sbjct: 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIA 209
Query: 497 KML--EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
L + YTG+D++ L R+A++ ++R+++ ++ E +L V+ K F EA +
Sbjct: 210 GDLRCDCYTGADLSALVREASICALRQEM------ARQKSGNEKGELKVSHKHFEEAFKK 263
Query: 555 CRKSVTAHD 563
R S++ D
Sbjct: 264 VRSSISKKD 272
Score = 96.1 bits (240), Expect = 3e-22
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHG--------TGKTMLAKAV 267
PNV W + L + + L A++ P P+ FK G GKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
A E G F +V L + Y GESE+ VR +F+
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQ 97
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 107 bits (269), Expect = 5e-25
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 34/177 (19%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA 469
+A AP+ IFIDE+D++ R E RR ++LL MDGL ++++AA
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQR----AHVIVMAA 346
Query: 470 TNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLEGY 502
TN P ++L + + + + ++D +++ G+
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 503 TGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID-LPVTEKDFREAIARCRKS 558
G+D+A L +AA+ +IR+K M + + I E ++ L VT DFR A+++ S
Sbjct: 407 VGADLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
Score = 85.2 bits (211), Expect = 1e-17
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHG--------TGK 260
+D ++ V ++ + G + A ++E + LP P FK + G TGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 261 TMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
T++A+AVA E G FF ++ + SK GESE +R FE
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE 291
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 89.6 bits (223), Expect = 4e-20
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
PNV++ + GL + ++E + LP PE F++ L GTGKT+LAKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
ATE TF V S L K+ GE LV+ +F++
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKL 105
Score = 88.9 bits (221), Expect = 9e-20
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 53/182 (29%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKI 463
+F+ A+ APS IFIDE+D++ + R D+ R R +LL +MDG ++ +
Sbjct: 102 IFKLAKEKAPSIIFIDEIDAIAAKRT-DALTGGDREVQRTLMQLLAEMDGFDAR---GDV 157
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
+I ATN P ++L + + + +++ +I+
Sbjct: 158 KII-GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216
Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556
KM EG G+++ + +A M +IR VT DFR+A+ +
Sbjct: 217 KMTEGCVGAELKAICTEAGMNAIRELRD-----------------YVTMDDFRKAVEKIM 259
Query: 557 KS 558
+
Sbjct: 260 EK 261
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 74.8 bits (184), Expect = 6e-15
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH--------GTGKTMLAKAVATECG 272
NK+ G A A + + +V T F K + G GK+ + V + G
Sbjct: 4 NKLDGFYIAPAFMDKLVVHIT--KNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61
Query: 273 TTFFNVSSSTLTSKYRGESEKLVRLLFE 300
+S+ L S GE KL+R +
Sbjct: 62 INPIMMSAGELESGNAGEPAKLIRQRYR 89
Score = 62.5 bits (152), Expect = 7e-11
Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 43/190 (22%)
Query: 411 ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL---------IQMDGLNSSLYED 461
R +FI+++D+ G +++ + + L +Q+ G+ + E+
Sbjct: 95 IRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY-NKQEN 153
Query: 462 KIIMILAATNHPYQL---------------------LTLCLEGVVIDVNLDFHKISKMLE 500
+ I+ N L G+ N+ + K+++
Sbjct: 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVD 213
Query: 501 GYTGSDIAN---LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 557
+ G I L +R+ + G +I + F +
Sbjct: 214 NFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGD---------KLLNSFDGPPTFEQP 264
Query: 558 SVTAHDLSKY 567
+T L +Y
Sbjct: 265 KMTIEKLLEY 274
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 66.5 bits (163), Expect = 2e-12
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 60/183 (32%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRG------SDSEHEASRRFKAELLIQMDGLNSSLYE 460
LF +AR AP ++IDE+D++ R S++E E + +LL++MDG+ ++
Sbjct: 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLN---QLLVEMDGMGTT--- 143
Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVI--DVNLD 491
D +I +LA+TN ++ L+ + +
Sbjct: 144 DHVI-VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFY 202
Query: 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREA 551
+++++ G++G+DIAN+ +AA+ + R V +F A
Sbjct: 203 SQRLAELTPGFSGADIANICNEAALHAAREG---------HTS--------VHTLNFEYA 245
Query: 552 IAR 554
+ R
Sbjct: 246 VER 248
Score = 52.2 bits (126), Expect = 1e-07
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGTGKTM 262
V + VAG+ EAK ++E + ++ K AL G GKT+
Sbjct: 2 GVSFKDVAGMHEAKLEVREFV-------DYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 54
Query: 263 LAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
LAKAVATE F ++ + G VR LF+
Sbjct: 55 LAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKE 93
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 66.1 bits (162), Expect = 4e-12
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 57/181 (31%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGSDS------EHEASRRFKAELLIQMDGLNSSLYE 460
LF A+ APS IFIDE+D++ R + E E + +LL +MDG S
Sbjct: 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN---QLLAEMDGFGSE--N 149
Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFH 493
+I++ AATN P ++L + ++GV + +++
Sbjct: 150 APVIVL-AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQ 208
Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553
+++K+ G G+D+AN+ +AA+++ R ++E V ++ +EA+
Sbjct: 209 EVAKLTAGLAGADLANIINEAALLAGRNN------------QKE-----VRQQHLKEAVE 251
Query: 554 R 554
R
Sbjct: 252 R 252
Score = 54.6 bits (132), Expect = 2e-08
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 21/102 (20%)
Query: 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGT 258
PNV++ +AG EAK + E + +F K L GT
Sbjct: 3 AEKPNVRFKDMAGNEEAKEEVVEIV-------DFLKYPERYANLGAKIPKGVLLVGPPGT 55
Query: 259 GKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
GKT+LAKAVA E FF++ S+ + G VR LFE
Sbjct: 56 GKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFE 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 7e-12
Identities = 94/533 (17%), Positives = 144/533 (27%), Gaps = 202/533 (37%)
Query: 187 QDIREKIFYSTGFEPSLIETLEKDILQNNPNVQ---WNK----VAGLTEAKAILQEAMVL 239
++E+ F EP+ E D + P K V+ L E + Q VL
Sbjct: 31 SQLQEQ-FNKILPEPT--EGFAAD---DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 240 PTIMPEFFKEALER---HS-----HGTGKTMLAK----------AVATECGTTFFNVSSS 281
+ EF LE H+ T L K A F S+S
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKSNS 143
Query: 282 TL-----TSKYR--------GESEK----LVRLLFE----MVSFLVGLHSNKTFYLVGVL 320
L + G ++ L R L++ +V L+ + L ++
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAET---LSELI 199
Query: 321 NGEPTTTFAYNK--QILQMNRRVLKGA--------LTTAPTRAENQESGPSI-------F 363
+ + IL+ L+ L + P S P I +
Sbjct: 200 RTTLDAEKVFTQGLNILE----WLENPSNTPDKDYLLSIPI------SCPLIGVIQLAHY 249
Query: 364 SVMVDGLGKGPWSMV----------------AVVATHFTWGKKGTCQSHEGHSGRINKNS 407
V LG P + +A +W +S +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW------ESFFVSVRKAITV- 302
Query: 408 LFQ--ARCY--APSTIFIDEV--DSL-------CSM---RGSDSEHEASRRFKAELLIQM 451
LF RCY P+T + DSL M + ++ +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT---------QEQVQDYV 353
Query: 452 DGLNSSLYEDKIIMI-L--AATN-----HPYQLLTLC--LEGVVIDVNLD---------- 491
+ NS L K + I L A N P L L L LD
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 492 -------------FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQED 538
FH S +L + + +D ++ +D
Sbjct: 414 LKFSNRFLPVASPFH--SHLLVPAS----DLINKDLVKNNV-------------SFNAKD 454
Query: 539 IDLPV--TE--KDFR-------EAIARC--RKSV---TAHDLSKYDSWMNEFG 575
I +PV T D R E I C R V T + + +FG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA--THILDFG 505
Score = 42.0 bits (98), Expect = 7e-04
Identities = 47/247 (19%), Positives = 83/247 (33%), Gaps = 84/247 (34%)
Query: 152 ERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIRE---KIFYSTGFEPSLI-ETL 207
+ GF ++ I+ N ++ H EK + IRE + + T + L E +
Sbjct: 1654 KDTYGF--SILDIVINNPVNLTI-HFGGEKG----KRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 208 EKDILQNNPNVQWNKVAG---LTEAKAILQEAMVLPTIMPEFFKEALER----------- 253
K+I +++ + + G T+ Q A+ L F++ +
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQ---FTQPALTLMEKAA--FEDLKSKGLIPADATFAG 1761
Query: 254 HSHG--TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEK------------------ 293
HS G LA ++A ++ S YRG + +
Sbjct: 1762 HSLGEYAA---LA-SLA---D--VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 294 ---LVRLLF--EMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYN---KQILQMNRRVLKG- 344
V F E + ++V +T +LV ++N YN +Q V G
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--------YNVENQQY------VAAGD 1858
Query: 345 --ALTTA 349
AL T
Sbjct: 1859 LRALDTV 1865
Score = 35.4 bits (81), Expect = 0.068
Identities = 45/279 (16%), Positives = 84/279 (30%), Gaps = 100/279 (35%)
Query: 209 KDILQNNPNVQ--WNKVAGLTEAKAILQEA-------MVL--PTIMPEFF-----KEALE 252
D+ + + Q WN A ++ +V+ P + F K E
Sbjct: 1633 MDLYKTSKAAQDVWN------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 253 RHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVR--------LLFEMVSF 304
+S +T++ + TE F ++ + + +R E L L E +F
Sbjct: 1687 NYSAMIFETIVDGKLKTE--KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 305 LV----GL-HSNKTF-------Y--LV---GVLNGEPTTTFAYNKQILQMNRRVLK--G- 344
GL ++ TF Y L V++ E V+ G
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV-------------EVVFYRGM 1791
Query: 345 ALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAV----VATHFTW-GKKGTCQSHEGH 399
+ A R D LG+ + M+A+ VA F+ + +
Sbjct: 1792 TMQVAVPR---------------DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 400 SGRI----NKNSLFQARCYAPSTIFI----DEVDSLCSM 430
+G + N N +D++ ++
Sbjct: 1837 TGWLVEIVNYNV-------ENQQYVAAGDLRALDTVTNV 1868
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 63.5 bits (155), Expect = 2e-11
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 48/170 (28%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYED 461
LF A+ +AP +FIDE+D++ RGS + E E + +LL++MDG
Sbjct: 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGFEKD---T 153
Query: 462 KIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHK 494
I+++ AATN P Q+L + G + ++D
Sbjct: 154 AIVVM-AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 212
Query: 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 544
++K G+ G+D+ NL +AA+++ R ++I +D++ +
Sbjct: 213 LAKRTPGFVGADLENLLNEAALLAAREG--------RRKITMKDLEEAAS 254
Score = 55.8 bits (135), Expect = 8e-09
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERH 254
+L P V + VAG EAK L+E + EF K L
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIPKGVLLVG 56
Query: 255 SHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G GKT LA+AVA E F S S + G VR LFE
Sbjct: 57 PPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 102
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 63.5 bits (155), Expect = 3e-11
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 48/170 (28%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYED 461
LF A+ +AP +FIDE+D++ RGS + E E + +LL++MDG
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGFEKD---T 177
Query: 462 KIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHK 494
I+++ AATN P Q+L + G + ++D
Sbjct: 178 AIVVM-AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 236
Query: 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 544
++K G+ G+D+ NL +AA+++ R ++I +D++ +
Sbjct: 237 LAKRTPGFVGADLENLLNEAALLAAREG--------RRKITMKDLEEAAS 278
Score = 55.4 bits (134), Expect = 1e-08
Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 21/104 (20%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSH 256
+L P V + VAG EAK L+E + EF K L
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIPKGVLLVGPP 82
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G GKT LA+AVA E F S S + G VR LFE
Sbjct: 83 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 126
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 63.1 bits (154), Expect = 3e-11
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 40/147 (27%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYED 461
+F QA+ AP IFIDE+D++ RG+ E E + ++L++MDG + +
Sbjct: 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN---QMLVEMDGFEGN---E 149
Query: 462 KIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHK 494
II+I AATN P Q+L + + V + ++D
Sbjct: 150 GIIVI-AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI 208
Query: 495 ISKMLEGYTGSDIANLARDAAMMSIRR 521
I++ G++G+D+ANL +AA+ + R
Sbjct: 209 IARGTPGFSGADLANLVNEAALFAARG 235
Score = 54.2 bits (131), Expect = 3e-08
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGT 258
++ + VAG EAK + E + E+ +E L GT
Sbjct: 4 EDQIKTTFADVAGCDEAKEEVAELV-------EYLREPSRFQKLGGKIPKGVLMVGPPGT 56
Query: 259 GKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
GKT+LAKA+A E FF +S S + G VR +FE
Sbjct: 57 GKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 98
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 59.8 bits (145), Expect = 5e-10
Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 34/172 (19%)
Query: 397 EGHSGRINKNSLF-QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455
+ K +F A S + +D+++ L S LL+ +
Sbjct: 107 TAKCQAMKK--IFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAP 162
Query: 456 SSLYEDKIIMILAATNHPYQLLTLCLEG---VVIDV--------------------NLDF 492
+ + ++I+ T+ L + + I V + +
Sbjct: 163 P---QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKER 219
Query: 493 HKISKMLEGYT---GSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 541
I++ ++G G + + ++ + + A ++E +D
Sbjct: 220 TTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLDF 271
Score = 57.8 bits (140), Expect = 2e-09
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA-----LERHSHGTGKTMLAKAVATE 270
+ N + + + + L + L +GKT LA +A E
Sbjct: 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87
Query: 271 CGTTFFNVSSSTLTSKYRGESE-KLVRLLFE 300
F + S + ++ + ++ +F+
Sbjct: 88 SNFPFIKICSPDKMIGFSETAKCQAMKKIFD 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 8e-09
Identities = 62/498 (12%), Positives = 124/498 (24%), Gaps = 186/498 (37%)
Query: 177 EANEKDGVFRQDIREKIFYSTGFEPSLIETLE-KDILQNNPNVQWNKVAGLTEAKAILQE 235
E E ++ DI FE + ++ + KD+ ++ + E I+
Sbjct: 10 ETGEHQYQYK-DILSV------FEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMS 57
Query: 236 AMVL--------------PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281
+ ++ +F +E L L + TE S
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-----INYKFLMSPIKTEQ------RQPS 106
Query: 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRV 341
+T Y + ++L N+ F YN ++R
Sbjct: 107 MMTRMYIEQRDRLYN-------------DNQVF--------AK-----YN-----VSRLQ 135
Query: 342 LKGALTTAPTRAENQESGPSIFSVMVDG-LGKGPWSMVAVVA------THFT----WGKK 390
L A ++ +DG LG G + V W
Sbjct: 136 PYLKLRQA---LLELRPAKNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 391 GTCQSHEG------------------------------HSGRINKNSLFQARCYAPSTIF 420
C S E HS + L +++ Y +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 421 IDEV---------DSLCSM----RGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
+ V + C + R + I +D + +L D++ +L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 468 --------------AATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD 513
T +P L + I L + + ++ D
Sbjct: 308 LKYLDCRPQDLPREVLTTNP---RRLSIIAESIRDGLA------TWDNW-----KHVNCD 353
Query: 514 AAMMSIRRKIMGQTPAQIKE------IKQEDIDLP----------VTEKDFREAIARCRK 557
I + PA+ ++ + +P V + D + + K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 558 -----------SVTAHDL 564
+++ +
Sbjct: 414 YSLVEKQPKESTISIPSI 431
Score = 56.8 bits (136), Expect = 1e-08
Identities = 71/499 (14%), Positives = 144/499 (28%), Gaps = 140/499 (28%)
Query: 182 DGVFRQD---IREKIFYSTGFEPSLIETL---EKDILQNNPNV--QWN-----KVAGLTE 228
+ V R + + I +PS++ + ++D L N+ V ++N L +
Sbjct: 84 EEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 229 AKAILQEAMVLPTI----MPEFFKEALERHSHGTGKTMLAKAVATECGTT---FFNVSSS 281
A L E + + G+GKT +A V F +
Sbjct: 143 A---LLELRPAKNVLIDGVL------------GSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 282 TLTSKYRGES--EKLVRLLFEMVSFLVGL--HSNKTFYLVGVLNGEPTTTFA-------- 329
L + E+ E L +LL+++ HS+ + + E
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 330 ------YNKQILQM---NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG------- 373
N + + ++L LTT + + S + + +D
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 374 --------------PWSM-------VAVVATHF-----TWG--KKGTCQSHEGHSGRINK 405
P + ++++A TW K C I +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT----TIIE 360
Query: 406 NSL-------FQARCYAPSTIFIDEVD---SLCSMRGSDSEHEASRRFKAEL----LIQM 451
+SL ++ + + ++F L S+ D +L L++
Sbjct: 361 SSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 452 DGLNSSLYEDKIIMILAAT-NHPYQLLTLCLEGVVIDVNLDFHKISK-MLEGYTGSDI-- 507
S++ I + L + Y L ++ I D + L+ Y S I
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 508 ----ANLARDAAMMS--------IRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555
+ + +KI + A + T + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-----TLQQLK----FY 530
Query: 556 RKSVTAHDLSKYDSWMNEF 574
+ + +D KY+ +N
Sbjct: 531 KPYICDND-PKYERLVNAI 548
Score = 42.1 bits (98), Expect = 6e-04
Identities = 36/304 (11%), Positives = 76/304 (25%), Gaps = 109/304 (35%)
Query: 332 KQILQMNRRVLKGA----LTTAPTRAE-----------NQESGPSIFSVMVDGLGKG-PW 375
K + M + +L + + QE F + + L +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKF 93
Query: 376 SMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS---TIFIDEVDSLCSMRG 432
M S + PS ++I++ D L +
Sbjct: 94 LM-----------------------------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 433 SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG--------V 484
+++ SR + ++ L +L E + + ++G V
Sbjct: 125 VFAKYNVSRL---QPYLK---LRQALLELR--------PAKN----VLIDGVLGSGKTWV 166
Query: 485 VIDVNLDFHKISKMLE--------GYTGSD------IANLARDAA-MMSIRRKIMGQTPA 529
+DV +K+ ++ S + L + R
Sbjct: 167 ALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 530 QIKEIKQEDIDLPVTEKDFREAI----------------ARCRKSVTAHDLSKYDSWMNE 573
+I I+ E L + K + + C+ +T D
Sbjct: 226 RIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 574 FGSH 577
+H
Sbjct: 285 TTTH 288
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 56.4 bits (137), Expect = 1e-08
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 59/181 (32%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS------DSEHEASRRFKAELLIQMDGLNSSLYE 460
LF QA+ +AP +FIDE+D++ RG+ D E E + +LL++MDG +S
Sbjct: 100 LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD-EREQTLN---QLLVEMDGFDSK--- 152
Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFH 493
+ II++ AATN P ++L + + +++
Sbjct: 153 EGIIVM-AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLE 211
Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553
I+K G+ G+D+ NL +AA+++ R + + +T KDF EAI
Sbjct: 212 IIAKRTPGFVGADLENLVNEAALLAAREG------------RDK-----ITMKDFEEAID 254
Query: 554 R 554
R
Sbjct: 255 R 255
Score = 49.5 bits (119), Expect = 2e-06
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 21/82 (25%)
Query: 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGTG 259
N V + V G EA L+E + EF K+ L GTG
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-------VVEFLKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 260 KTMLAKAVATECGTTFFNVSSS 281
KT+LA+AVA E FF++S S
Sbjct: 62 KTLLARAVAGEANVPFFHISGS 83
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 55.7 bits (135), Expect = 2e-08
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 50/167 (29%)
Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS------DSEHEASRRFKAELLIQMDGLNSSLYE 460
LF A+ +AP +FIDE+D++ RGS D E E + +LL++MDG
Sbjct: 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND-EREQTLN---QLLVEMDGFEKD--- 167
Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFH 493
I+++ AATN P Q+L + G + ++D
Sbjct: 168 TAIVVM-AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLA 226
Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 540
++K G+ G+D+ NL +AA+++ R ++I +D++
Sbjct: 227 LLAKRTPGFVGADLENLLNEAALLAAREG--------RRKITMKDLE 265
Score = 49.9 bits (120), Expect = 1e-06
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSH 256
+L P V + VAG EAK L+E + EF K L
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKE-------IVEFLKNPSRFHEMGARIPKGVLLVGPP 73
Query: 257 GTGKTMLAKAVATECGTTFFNVSSS 281
G GKT LA+AVA E F S S
Sbjct: 74 GVGKTHLARAVAGEARVPFITASGS 98
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 46.7 bits (112), Expect = 5e-07
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 19/68 (27%)
Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
+NL KI++++ G +G+++ + +A M ++R + + VT++
Sbjct: 32 GINLR--KIAELMPGASGAEVKGVCTEAGMYALRERRV-----------------HVTQE 72
Query: 547 DFREAIAR 554
DF A+A+
Sbjct: 73 DFEMAVAK 80
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 46.3 bits (111), Expect = 5e-07
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 19/68 (27%)
Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
+NL KI++++ G +G+++ + +A M ++R + + VT++
Sbjct: 24 GINLR--KIAELMPGASGAEVKGVCTEAGMYALRERRV-----------------HVTQE 64
Query: 547 DFREAIAR 554
DF A+A+
Sbjct: 65 DFEMAVAK 72
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 45.0 bits (107), Expect = 2e-06
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
+V+L+ + +G+DI ++ +++ M+++R V K
Sbjct: 22 EVDLE--DYVARPDKISGADINSICQESGMLAVRENRY-----------------IVLAK 62
Query: 547 DFREAIARCRKS 558
DF +A K
Sbjct: 63 DFEKAYKTVIKK 74
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 44.5 bits (106), Expect = 3e-06
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 22/83 (26%)
Query: 483 GVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLP 542
+ ++ + + IS++ TG+++ ++ +A M +IR + +++
Sbjct: 16 SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---------RKV-------- 58
Query: 543 VTEKDFREAIARC-----RKSVT 560
TEKDF +A+ + + S T
Sbjct: 59 ATEKDFLKAVDKVISGYKKFSST 81
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 42.7 bits (101), Expect = 1e-05
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
+ +LD + + +G+ IA + ++A + ++R+ + +
Sbjct: 19 EADLD--SLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY-----------------VILQS 59
Query: 547 DFREAIAR 554
D EA A
Sbjct: 60 DLEEAYAT 67
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 34.0 bits (77), Expect = 0.10
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 17/116 (14%)
Query: 203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS------- 255
L E + ++ GL K ++E L + K L +
Sbjct: 13 LRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSF 72
Query: 256 ---HGTGKTMLAKAVATEC-------GTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
GTGKT +A +A +V+ L +Y G + + + +
Sbjct: 73 TGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR 128
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 33.4 bits (76), Expect = 0.23
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 257 GTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTF 314
GTGKT LA A+A E G F + S + S ++E L+ + + + K
Sbjct: 73 GTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRR--AIGLRIKETKEV 130
Query: 315 Y 315
Y
Sbjct: 131 Y 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 85 EKKPSANK-EPDSIADRWINSLRKRDPEIQPTLPAI 119
EK+ + K + SL+ + P L AI
Sbjct: 18 EKQ-ALKKLQ---------ASLKLYADDSAPAL-AI 42
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 31.0 bits (71), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 257 GTGKTMLAKAVATECGTTFFNVS 279
GTGKT LA+ +A +S
Sbjct: 60 GTGKTTLAEVIARYANADVERIS 82
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 29.2 bits (65), Expect = 4.0
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Query: 266 AVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPT 325
++T +NV VR+L + ++ + +
Sbjct: 35 ILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV 94
Query: 326 TTFAYNKQI--LQMNRRVLKGAL 346
+ + + L ++R + +
Sbjct: 95 SRIKVDAPVKDLFLSREFIVVSY 117
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 28.3 bits (63), Expect = 8.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 257 GTGKTMLAKAVATECG 272
G GKT A VA E G
Sbjct: 87 GIGKTTAAHLVAQELG 102
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 28.1 bits (63), Expect = 9.5
Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 20/171 (11%)
Query: 321 NGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAV 380
GE +++ +++ +G L + +M + + +
Sbjct: 143 WGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQS 202
Query: 381 VATHFTWGKKGTCQSHEGHSGRI----NKNSLFQA---------RCYAPSTIFIDEVDSL 427
+ + K + + + L +FIDE+D +
Sbjct: 203 LFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKI 262
Query: 428 CSMRGSDSEHEASRR-FKAELLIQMDGLN-----SSLYEDKIIMILAATNH 472
C +G S + SR + +LL ++G + D I+ I +
Sbjct: 263 CK-KGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 312
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,398,450
Number of extensions: 489196
Number of successful extensions: 1376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 81
Length of query: 577
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 478
Effective length of database: 3,937,614
Effective search space: 1882179492
Effective search space used: 1882179492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)