RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16204
(577 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 111 bits (279), Expect = 2e-28
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 50/185 (27%)
Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLN 455
G ++ A+ +AP +FIDE+D++ RGS ++ + +LL++MDG
Sbjct: 84 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 143
Query: 456 SSLYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDV 488
D I+++AATN P Q+L + G +
Sbjct: 144 K----DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE 199
Query: 489 NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 548
++D ++K G+ G+D+ NL +AA+++ R +T KD
Sbjct: 200 DVDLALLAKRTPGFVGADLENLLNEAALLAAREGRR-----------------KITMKDL 242
Query: 549 REAIA 553
EA +
Sbjct: 243 EEAAS 247
Score = 89.5 bits (222), Expect = 9e-21
Identities = 34/94 (36%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS--------HGTGKTMLAKAV 267
P V + VAG EAK L+E +V P F E R G GKT LA+AV
Sbjct: 4 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 62
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A E F S S + G VR LFE
Sbjct: 63 AGEARVPFITASGSDFVEMFVGVGAARVRDLFET 96
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 108 bits (271), Expect = 3e-27
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 50/174 (28%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
QA+ AP IFIDE+D++ RG+ H+ + ++L++MDG ++ I+++
Sbjct: 99 QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVI 154
Query: 468 AATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLE 500
AATN P Q+L + + V + ++D I++
Sbjct: 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTP 214
Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
G++G+D+ANL +AA+ + R V+ +F +A +
Sbjct: 215 GFSGADLANLVNEAALFAARGNKR-----------------VVSMVEFEKAKDK 251
Score = 89.1 bits (221), Expect = 2e-20
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS--------HGTGKTM 262
+ ++ + VAG EAK + E + P F++ + GTGKT+
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 263 LAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
LAKA+A E FF +S S + G VR +FE
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 99
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 89.1 bits (220), Expect = 2e-20
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 40/193 (20%)
Query: 394 QSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG--SDSEHEASRRFKAELLIQM 451
G S + +AR AP +F DE+DS+ RG A+ R ++L +M
Sbjct: 79 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 138
Query: 452 DGLNSSLYEDKIIMILAATNHPYQL---------------------------LTLCLEGV 484
DG+++ K + I+ ATN P + L L
Sbjct: 139 DGMST----KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 194
Query: 485 VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID---L 541
+ ++D ++KM G++G+D+ + + A ++IR I ++I+ ++ + +
Sbjct: 195 PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI----ESEIRRERERQTNPSAM 250
Query: 542 PVTEKDFREAIAR 554
V E D I R
Sbjct: 251 EVEEDDPVPEIRR 263
Score = 74.9 bits (183), Expect = 1e-15
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
P V W + GL + K LQE + P P+ F + L G GKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
A EC F ++ L + + GESE VR +F+
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDK 95
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 73.1 bits (178), Expect = 5e-15
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 32/189 (16%)
Query: 393 CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 452
G S + + +A AP+ IFIDE+D++ R E RR ++LL MD
Sbjct: 75 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMD 133
Query: 453 GLNSSLYEDKIIMILAATNHPY---------------------------QLLTLCLEGVV 485
L + ++++AATN P ++L + + +
Sbjct: 134 ----GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 189
Query: 486 IDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTE 545
+ ++D +++ G+ G+D+A L +AA+ +IR+K+ + L VT
Sbjct: 190 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTM 249
Query: 546 KDFREAIAR 554
DFR A+++
Sbjct: 250 DDFRWALSQ 258
Score = 62.4 bits (150), Expect = 2e-11
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAVAT 269
V ++ V G + A ++E + LP P FK L GTGKT++A+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
E G FF ++ + SK GESE +R FE
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEE 92
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 62.4 bits (151), Expect = 3e-11
Identities = 18/152 (11%), Positives = 41/152 (26%), Gaps = 25/152 (16%)
Query: 164 IIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQW--N 221
+ + ++ D + ++I + EK + + +V
Sbjct: 37 LESVEDGTPVLAIGVESGDAIVFDKNAQRI----------VAYKEKSVKAEDGSVSVVQV 86
Query: 222 KVAGLTEAKAILQEAMV--LPTIMPEFFKEALERHSH---------GTGKTMLAKAVATE 270
+ + + + L P + R++ +GKT L A+
Sbjct: 87 ENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146
Query: 271 CG--TTFFNVSSSTLTSKYRGESEKLVRLLFE 300
G + V S Y + V +
Sbjct: 147 LGGKDKYATVRFGEPLSGYNTDFNVFVDDIAR 178
Score = 55.8 bits (134), Expect = 5e-09
Identities = 17/154 (11%), Positives = 48/154 (31%), Gaps = 35/154 (22%)
Query: 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPY 474
I ID + ++ G ++ R +LL + + +S + +++A+ N
Sbjct: 182 QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAAS----RGCVVIASLNPTS 237
Query: 475 QLLTL------------CLEGVVIDVNLDFHKISKMLEGY--TGSDIANLARDAAMMSIR 520
+ + DV+ ++ +++ EG + + ++++I
Sbjct: 238 NDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIH 297
Query: 521 RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
++ +AI
Sbjct: 298 TSKQ-----------------SGGKQASGKAIQT 314
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 52.7 bits (125), Expect = 4e-08
Identities = 14/176 (7%), Positives = 40/176 (22%), Gaps = 19/176 (10%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQM------DGLNSSLYEDKI 463
Y+ E M + + KI
Sbjct: 89 HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148
Query: 464 IMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKI 523
L + + + ++ +++ L + IR
Sbjct: 149 NSYLGTIERYETMY----ADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYN 204
Query: 524 MGQTPAQ---------IKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 570
KE +++++ V+ K+ + + R + + + + +
Sbjct: 205 REGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEF 260
Score = 37.6 bits (86), Expect = 0.002
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLT---SKYRGESEKLVRLLFEMV 302
G+GKT L A+ E + + T + + + + + V
Sbjct: 42 GSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHV 90
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 44.7 bits (105), Expect = 2e-05
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKY-RGESEKLVRLLFEMVSFLVGLHSNK 312
+GKT LA A+ CG NV+ + G + ++FE V G +
Sbjct: 164 DSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDL 220
Score = 41.2 bits (96), Expect = 2e-04
Identities = 13/153 (8%), Positives = 42/153 (27%), Gaps = 16/153 (10%)
Query: 407 SLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAE--LLIQMDGLNSSLYEDKII 464
PS I+ +D+L + ++ + + + + Y
Sbjct: 212 GTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKT 271
Query: 465 MILAATNHPY-----------QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD 513
+ + LE +I + + ++ ++ A +
Sbjct: 272 LQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIA--LLLMLIWYRPVAEFAQSIQS 329
Query: 514 AAMMSIRRKIMGQTPAQIKEIKQE-DIDLPVTE 545
+ R + + +++K + + V +
Sbjct: 330 RIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD 362
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 35.7 bits (81), Expect = 0.009
Identities = 15/67 (22%), Positives = 22/67 (32%)
Query: 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVS 279
++ G K L+ + E + L G GKT LA +A E G S
Sbjct: 8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 67
Query: 280 SSTLTSK 286
+
Sbjct: 68 GPAIEKP 74
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 35.6 bits (81), Expect = 0.013
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 7/123 (5%)
Query: 343 KGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGR 402
K L PT E + + K + V + G
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG- 108
Query: 403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDK 462
+FIDE+D +C + + +LL ++G S
Sbjct: 109 ------AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 162
Query: 463 IIM 465
+
Sbjct: 163 VKT 165
Score = 27.9 bits (61), Expect = 3.1
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH---------GTGKTMLAKAVATECG 272
+ G +AK + A+ + + + G GKT +A+ +A
Sbjct: 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 74
Query: 273 TTFFNVSSSTLTSKY 287
F V ++ T
Sbjct: 75 APFIKVEATKFTEVG 89
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 33.2 bits (75), Expect = 0.097
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLT 284
G GKT +A+ +A F V ++ T
Sbjct: 59 GVGKTEIARRLAKLANAPFIKVEATKFT 86
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 32.2 bits (72), Expect = 0.12
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 19/96 (19%)
Query: 205 ETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------- 256
E I+ N ++W +L + +L + K +
Sbjct: 1 EDYASYIM--NGIIKWGD-----PVTRVLDDGELLV----QQTKNSDRTPLVSVLLEGPP 49
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 292
+GKT LA +A E F + S + ++
Sbjct: 50 HSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 85
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 30.7 bits (68), Expect = 0.35
Identities = 17/67 (25%), Positives = 24/67 (35%)
Query: 220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVS 279
++ G K L A+ + E L G GKT LA +A+E T S
Sbjct: 8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 67
Query: 280 SSTLTSK 286
L +
Sbjct: 68 GPVLVKQ 74
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.9 bits (66), Expect = 0.58
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTL 283
G+GK+ +A+A+A G + S L
Sbjct: 14 GSGKSTIAEALANLPGVPKVHFHSDDL 40
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.1 bits (66), Expect = 0.71
Identities = 9/65 (13%), Positives = 21/65 (32%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYL 316
TGK+ + K E + + + + + L + ++ LV + L
Sbjct: 39 RTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKAL 98
Query: 317 VGVLN 321
+
Sbjct: 99 KNIQG 103
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500
{Pectobacterium atrosepticum [TaxId: 29471]}
Length = 127
Score = 28.6 bits (63), Expect = 1.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 537 EDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWM 571
+D++ D A R K++T +D++ D
Sbjct: 4 DDVNQADVLADVTAAFYRYEKALTGNDVAVLDELF 38
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.7 bits (63), Expect = 1.8
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 257 GTGKTMLAKAVAT-------ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLH 309
GTGK+ +A+A G + + + S ++R +V +G+
Sbjct: 38 GTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVS 97
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.5 bits (62), Expect = 1.9
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 256 HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 292
+GK++L +A TT + G E
Sbjct: 16 ESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.3 bits (59), Expect = 3.5
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289
GK+ + + + + + +L
Sbjct: 13 SAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,018,876
Number of extensions: 90674
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 29
Length of query: 577
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 487
Effective length of database: 1,171,896
Effective search space: 570713352
Effective search space used: 570713352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)