BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16205
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 135 bits (339), Expect = 7e-33, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 81/103 (78%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
MYGLPTDT+RK+F+T++ +NG++P Y+E+ F+F+KVVLPDLAV+R V +ENGK +G R
Sbjct: 675 MYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEENGKFIGHR 734
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPDGF 103
++PLDG++ GYRH+ LR E+N P+ L +F +I K YV D F
Sbjct: 735 VMPLDGIKPGYRHVPLRNESNRPLGLASVFAHIVAKDYVSDAF 777
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 132 bits (331), Expect = 6e-32, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
MYGLPTDT+RK+F+T+ +NG++P YNE F+F+KVVLPDLAV+R V ++ GK +G R
Sbjct: 675 MYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVLPDLAVVRIIVNEDGGKFIGHR 734
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPDGF 103
++PLDG++ GYRHI LR E+N P+ L +F +I K YV D F
Sbjct: 735 LMPLDGIKPGYRHIPLRNESNRPLGLASVFAHIVAKDYVSDAF 777
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 110 bits (276), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/101 (50%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
M+GLP DT R+++RTR N NPV++EEPF F KVVLP LA LR ++E GK +G R
Sbjct: 752 MFGLPVDT-RRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHR 810
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPD 101
ILP+ +++GY ++ LR EAN P+ LP L E Y+PD
Sbjct: 811 ILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIPD 851
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
M+GLP DT R+++RTR N NPV++EEPF F KVVLP LA LR ++E GK +G R
Sbjct: 750 MFGLPVDT-RRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHR 808
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPDGFE 104
ILP+ +++GY ++ LR EAN P+ LP L E Y+PD +
Sbjct: 809 ILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIPDDHQ 852
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 105 bits (261), Expect = 8e-24, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
Query: 1 MYGLPTDTIRKEFRTRLCPS-NGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQ 59
++GLP D R+ +RT+L PS N +NPV+ EEPF+F K+++P+LA LR V +E K LG
Sbjct: 703 LFGLPGDPKRR-YRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEGNKFLGH 761
Query: 60 RILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELK 96
RI+P++ L +GY H+ L +E+N P+++P LF +E+K
Sbjct: 762 RIIPINALNSGYHHLCLHSESNMPLTMPALFIFLEMK 798
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGV--YDENGK--L 56
++G+ DT ++ T + +NG NP ++ E F F +V +PDLA++RF V YD + K
Sbjct: 528 IHGVGRDTGSRQ--TAVITNNGFNPRWDME-FEF-EVTVPDLALVRFMVEDYDSSSKNDF 583
Query: 57 LGQRILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELK 96
+GQ +P + L+ GYRH+ L ++ LF I ++
Sbjct: 584 IGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKISIQ 623
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGV--YDENGK--L 56
++G+ DT ++ T + +NG NP ++ E F F +V +PDLA++RF V YD + K
Sbjct: 526 IHGVGRDTGSRQ--TAVITNNGFNPRWDME-FEF-EVTVPDLALVRFMVEDYDSSSKNDF 581
Query: 57 LGQRILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELK 96
+GQ +P + L+ GYRH+ L ++ LF I ++
Sbjct: 582 IGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKISIQ 621
>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
Length = 459
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 23 LNPVYNEEPFLFRKVVLPDLAVLRFGVYDE 52
+NPV EE LF + +PDLA R + DE
Sbjct: 107 INPVTYEENVLFEQKEVPDLAKCRVLICDE 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.147 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,226
Number of Sequences: 62578
Number of extensions: 135695
Number of successful extensions: 191
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 9
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)