Query psy16205
Match_columns 109
No_of_seqs 132 out of 1024
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:30:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0169|consensus 99.9 8.5E-28 1.8E-32 195.6 8.0 93 1-97 649-745 (746)
2 PLN02223 phosphoinositide phos 99.9 3.4E-26 7.3E-31 182.6 10.2 90 1-95 443-536 (537)
3 PLN02230 phosphoinositide phos 99.9 9.7E-26 2.1E-30 182.2 9.2 90 1-95 504-597 (598)
4 PLN02222 phosphoinositide phos 99.9 2.2E-25 4.8E-30 179.8 9.6 90 1-95 487-580 (581)
5 PLN02228 Phosphoinositide phos 99.9 1.6E-24 3.6E-29 174.4 9.9 93 1-98 466-563 (567)
6 PLN02952 phosphoinositide phos 99.9 3.8E-24 8.2E-29 173.1 9.8 90 1-95 505-598 (599)
7 KOG1265|consensus 99.9 1.2E-24 2.7E-29 179.3 6.3 105 1-105 728-832 (1189)
8 KOG1264|consensus 99.9 3.4E-22 7.3E-27 164.3 7.1 95 1-99 1093-1192(1267)
9 cd00275 C2_PLC_like C2 domain 99.8 3.6E-18 7.8E-23 112.9 10.0 84 11-96 42-128 (128)
10 cd08395 C2C_Munc13 C2 domain t 99.6 1.9E-15 4E-20 100.9 8.4 68 8-78 35-112 (120)
11 cd04016 C2_Tollip C2 domain pr 99.6 2.3E-14 5E-19 95.7 9.8 80 11-94 33-120 (121)
12 cd04015 C2_plant_PLD C2 domain 99.6 4.5E-14 9.7E-19 97.9 10.4 80 13-96 72-158 (158)
13 cd08682 C2_Rab11-FIP_classI C2 99.6 4.9E-14 1.1E-18 93.6 9.5 80 11-93 31-125 (126)
14 cd08373 C2A_Ferlin C2 domain f 99.5 1.6E-13 3.6E-18 91.1 11.0 88 12-103 27-123 (127)
15 cd04019 C2C_MCTP_PRT_plant C2 99.5 8.6E-14 1.9E-18 95.9 9.7 84 11-96 32-132 (150)
16 cd04042 C2A_MCTP_PRT C2 domain 99.5 9.6E-14 2.1E-18 91.5 9.4 81 11-96 33-120 (121)
17 cd04036 C2_cPLA2 C2 domain pre 99.5 1.8E-13 3.9E-18 90.0 8.9 76 12-95 36-117 (119)
18 PLN03008 Phospholipase D delta 99.5 2.2E-13 4.8E-18 113.7 10.3 86 12-101 90-182 (868)
19 cd04022 C2A_MCTP_PRT_plant C2 99.5 4.5E-13 9.8E-18 89.1 8.5 84 11-97 32-127 (127)
20 cd08677 C2A_Synaptotagmin-13 C 99.4 1.3E-13 2.8E-18 91.9 5.2 60 11-73 47-114 (118)
21 cd08378 C2B_MCTP_PRT_plant C2 99.4 5.7E-13 1.2E-17 88.5 8.3 80 12-95 29-119 (121)
22 cd08400 C2_Ras_p21A1 C2 domain 99.4 2E-12 4.3E-17 86.3 10.7 82 13-98 36-125 (126)
23 cd08678 C2_C21orf25-like C2 do 99.4 2.2E-12 4.7E-17 85.8 10.3 83 11-97 31-121 (126)
24 cd08379 C2D_MCTP_PRT_plant C2 99.4 1.2E-12 2.6E-17 88.0 8.8 77 11-91 35-125 (126)
25 cd08681 C2_fungal_Inn1p-like C 99.4 4.2E-13 9.2E-18 87.8 6.2 78 12-94 34-117 (118)
26 cd04029 C2A_SLP-4_5 C2 domain 99.4 5.3E-13 1.1E-17 89.1 6.4 63 11-76 53-124 (125)
27 cd08690 C2_Freud-1 C2 domain f 99.4 3.9E-12 8.4E-17 88.4 10.3 86 9-99 39-140 (155)
28 cd04039 C2_PSD C2 domain prese 99.4 6.5E-13 1.4E-17 86.8 6.1 59 11-72 37-100 (108)
29 cd08377 C2C_MCTP_PRT C2 domain 99.4 3.3E-12 7.2E-17 83.4 9.3 80 12-95 34-118 (119)
30 cd08381 C2B_PI3K_class_II C2 d 99.4 1.2E-12 2.6E-17 87.0 6.6 58 11-71 49-113 (122)
31 cd04028 C2B_RIM1alpha C2 domai 99.4 2.3E-12 4.9E-17 88.7 8.0 67 11-81 67-141 (146)
32 cd08376 C2B_MCTP_PRT C2 domain 99.4 4.6E-12 9.9E-17 82.6 9.0 77 11-96 32-115 (116)
33 cd04010 C2B_RasA3 C2 domain se 99.4 3.3E-12 7.3E-17 87.9 8.5 69 12-83 36-127 (148)
34 cd08393 C2A_SLP-1_2 C2 domain 99.4 1E-12 2.3E-17 87.5 5.1 63 11-76 53-124 (125)
35 cd04033 C2_NEDD4_NEDD4L C2 dom 99.4 7.9E-12 1.7E-16 83.3 9.2 80 12-95 40-132 (133)
36 cd04050 C2B_Synaptotagmin-like 99.4 2.3E-12 5E-17 83.2 6.3 65 11-78 32-102 (105)
37 cd08392 C2A_SLP-3 C2 domain fi 99.3 2.3E-12 5E-17 86.5 6.1 57 11-70 53-115 (128)
38 cd08401 C2A_RasA2_RasA3 C2 dom 99.3 1.3E-11 2.9E-16 81.9 9.7 78 12-93 35-119 (121)
39 cd04013 C2_SynGAP_like C2 doma 99.3 1.4E-11 3.1E-16 84.8 9.8 82 13-98 41-141 (146)
40 cd08688 C2_KIAA0528-like C2 do 99.3 3.2E-12 6.9E-17 83.2 5.7 65 11-78 32-109 (110)
41 cd08375 C2_Intersectin C2 doma 99.3 1.5E-11 3.2E-16 83.4 8.4 55 12-69 48-106 (136)
42 KOG1030|consensus 99.3 3.4E-12 7.4E-17 89.2 5.4 58 11-72 38-99 (168)
43 cd04043 C2_Munc13_fungal C2 do 99.3 3E-11 6.4E-16 79.8 9.6 75 12-96 37-121 (126)
44 cd04041 C2A_fungal C2 domain f 99.3 3.4E-12 7.4E-17 83.2 5.0 63 12-77 38-107 (111)
45 cd08391 C2A_C2C_Synaptotagmin_ 99.3 1.9E-11 4.1E-16 79.8 8.5 76 11-94 39-120 (121)
46 cd04052 C2B_Tricalbin-like C2 99.3 2.8E-11 6E-16 78.9 9.2 78 12-97 26-110 (111)
47 cd04051 C2_SRC2_like C2 domain 99.3 3E-12 6.6E-17 84.6 4.6 71 12-84 34-120 (125)
48 cd04040 C2D_Tricalbin-like C2 99.3 2E-11 4.3E-16 79.4 8.2 73 13-90 34-113 (115)
49 PLN02270 phospholipase D alpha 99.3 1.7E-11 3.8E-16 102.2 9.3 86 13-102 61-154 (808)
50 cd04046 C2_Calpain C2 domain p 99.3 8.5E-11 1.8E-15 78.2 10.8 83 11-97 35-123 (126)
51 cd04011 C2B_Ferlin C2 domain s 99.3 1.9E-11 4.2E-16 79.5 7.4 65 12-79 33-111 (111)
52 cd04018 C2C_Ferlin C2 domain t 99.3 2.6E-11 5.6E-16 83.8 7.8 57 11-70 46-107 (151)
53 cd08406 C2B_Synaptotagmin-12 C 99.3 3.4E-12 7.3E-17 86.7 3.3 69 12-83 53-128 (136)
54 cd04024 C2A_Synaptotagmin-like 99.3 7.2E-11 1.6E-15 77.9 9.4 81 11-94 35-127 (128)
55 cd08407 C2B_Synaptotagmin-13 C 99.3 3.2E-12 7E-17 87.1 2.9 70 11-83 54-130 (138)
56 cd04014 C2_PKC_epsilon C2 doma 99.3 6.9E-11 1.5E-15 79.0 9.2 72 13-96 49-129 (132)
57 cd04025 C2B_RasA1_RasA4 C2 dom 99.3 8.9E-11 1.9E-15 77.4 9.6 65 12-79 33-104 (123)
58 cd08385 C2A_Synaptotagmin-1-5- 99.2 1.6E-11 3.5E-16 81.0 5.9 57 12-71 52-114 (124)
59 cd08685 C2_RGS-like C2 domain 99.2 1.1E-11 2.4E-16 82.1 4.9 58 11-71 48-111 (119)
60 cd08680 C2_Kibra C2 domain fou 99.2 1.4E-11 3.1E-16 82.5 5.4 64 4-70 44-114 (124)
61 cd08382 C2_Smurf-like C2 domai 99.2 5.3E-11 1.2E-15 78.9 8.0 78 11-93 33-122 (123)
62 cd04032 C2_Perforin C2 domain 99.2 3.2E-11 7E-16 81.1 6.7 57 12-70 60-120 (127)
63 cd08521 C2A_SLP C2 domain firs 99.2 3.3E-11 7.1E-16 79.1 5.9 58 11-71 52-115 (123)
64 cd04044 C2A_Tricalbin-like C2 99.2 7.9E-11 1.7E-15 77.2 7.5 80 11-96 37-123 (124)
65 cd08389 C2A_Synaptotagmin-14_1 99.2 3.4E-11 7.3E-16 80.2 5.7 58 11-71 51-114 (124)
66 cd08394 C2A_Munc13 C2 domain f 99.2 5.7E-11 1.2E-15 80.1 6.3 63 11-78 31-101 (127)
67 cd04054 C2A_Rasal1_RasA4 C2 do 99.2 2.1E-10 4.5E-15 75.8 8.8 78 13-94 35-120 (121)
68 cd04048 C2A_Copine C2 domain f 99.2 6.6E-11 1.4E-15 77.9 6.4 64 12-78 40-114 (120)
69 cd04027 C2B_Munc13 C2 domain s 99.2 1.8E-10 4E-15 76.7 8.4 77 12-92 34-126 (127)
70 cd08387 C2A_Synaptotagmin-8 C2 99.2 5.5E-11 1.2E-15 78.5 5.8 58 12-72 52-115 (124)
71 cd04031 C2A_RIM1alpha C2 domai 99.2 8.7E-11 1.9E-15 77.3 6.7 62 12-76 54-124 (125)
72 cd04030 C2C_KIAA1228 C2 domain 99.2 9.5E-11 2.1E-15 77.4 6.4 58 11-71 53-118 (127)
73 cd08404 C2B_Synaptotagmin-4 C2 99.1 1.7E-11 3.6E-16 82.5 2.0 70 12-84 53-129 (136)
74 cd08692 C2B_Tac2-N C2 domain s 99.1 6.9E-11 1.5E-15 80.5 5.0 61 11-73 51-117 (135)
75 cd08388 C2A_Synaptotagmin-4-11 99.1 1.1E-10 2.3E-15 78.2 5.8 57 12-70 53-115 (128)
76 cd08676 C2A_Munc13-like C2 dom 99.1 1.6E-10 3.5E-15 80.1 6.6 53 13-68 91-143 (153)
77 cd08402 C2B_Synaptotagmin-1 C2 99.1 2.4E-11 5.1E-16 81.6 2.1 69 12-83 53-128 (136)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.1 4.3E-11 9.4E-16 79.9 3.3 69 12-83 51-126 (133)
79 cd04009 C2B_Munc13-like C2 dom 99.1 1.1E-10 2.5E-15 78.3 5.3 55 12-69 56-118 (133)
80 cd04038 C2_ArfGAP C2 domain pr 99.1 2.7E-10 6E-15 78.1 7.1 58 11-72 33-94 (145)
81 cd08390 C2A_Synaptotagmin-15-1 99.1 2.4E-10 5.1E-15 75.1 6.3 57 12-71 51-113 (123)
82 cd08405 C2B_Synaptotagmin-7 C2 99.1 3.7E-11 8E-16 80.7 2.4 70 12-84 53-129 (136)
83 cd04049 C2_putative_Elicitor-r 99.1 3.1E-10 6.7E-15 74.9 6.5 57 12-70 34-97 (124)
84 cd04017 C2D_Ferlin C2 domain f 99.1 1.5E-09 3.3E-14 72.9 10.0 82 11-97 33-133 (135)
85 cd08386 C2A_Synaptotagmin-7 C2 99.1 3E-10 6.5E-15 74.9 6.2 57 12-71 52-115 (125)
86 cd08383 C2A_RasGAP C2 domain ( 99.1 2.5E-09 5.5E-14 69.4 9.9 80 12-95 31-117 (117)
87 cd04037 C2E_Ferlin C2 domain f 99.1 5.2E-10 1.1E-14 74.4 6.7 54 13-69 36-93 (124)
88 cd04026 C2_PKC_alpha_gamma C2 99.1 5.3E-10 1.1E-14 74.4 6.5 67 11-80 50-123 (131)
89 cd08675 C2B_RasGAP C2 domain s 99.1 6.6E-10 1.4E-14 75.3 6.9 67 11-80 34-122 (137)
90 cd08686 C2_ABR C2 domain in th 99.0 8.1E-10 1.8E-14 73.6 6.9 57 11-72 31-101 (118)
91 cd04021 C2_E3_ubiquitin_ligase 99.0 1.3E-09 2.8E-14 72.5 7.9 54 12-70 35-92 (125)
92 cd08691 C2_NEDL1-like C2 domai 99.0 1.7E-09 3.7E-14 73.6 8.3 54 12-70 46-107 (137)
93 cd08410 C2B_Synaptotagmin-17 C 99.0 1.1E-10 2.4E-15 78.7 2.3 70 12-84 52-129 (135)
94 cd08408 C2B_Synaptotagmin-14_1 99.0 3.8E-10 8.2E-15 76.6 4.9 56 12-70 54-115 (138)
95 cd08409 C2B_Synaptotagmin-15 C 99.0 3.9E-10 8.5E-15 76.3 4.9 56 12-70 52-113 (137)
96 cd08403 C2B_Synaptotagmin-3-5- 99.0 1E-10 2.2E-15 78.3 2.0 70 12-84 52-128 (134)
97 cd00276 C2B_Synaptotagmin C2 d 99.0 1.5E-10 3.3E-15 76.8 2.8 70 12-84 52-128 (134)
98 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.0 4.8E-10 1E-14 78.0 5.3 55 11-68 64-125 (162)
99 cd04035 C2A_Rabphilin_Doc2 C2 99.0 6.6E-10 1.4E-14 73.2 5.5 58 12-71 53-115 (123)
100 cd04045 C2C_Tricalbin-like C2 99.0 2.2E-09 4.7E-14 71.1 6.2 65 12-80 35-105 (120)
101 cd04047 C2B_Copine C2 domain s 99.0 1.9E-09 4.1E-14 69.7 5.8 62 11-76 38-108 (110)
102 KOG0696|consensus 98.9 3.7E-10 8E-15 89.4 1.8 62 4-68 210-276 (683)
103 smart00239 C2 Protein kinase C 98.9 4.4E-09 9.5E-14 64.7 6.1 61 12-75 36-100 (101)
104 KOG1028|consensus 98.9 6.9E-09 1.5E-13 82.0 8.3 82 11-95 202-293 (421)
105 PLN03200 cellulose synthase-in 98.9 5E-09 1.1E-13 94.3 6.9 82 12-96 2012-2100(2102)
106 PLN02352 phospholipase D epsil 98.8 1.3E-08 2.8E-13 84.9 8.5 78 21-101 54-135 (758)
107 PF00168 C2: C2 domain; Inter 98.8 8E-09 1.7E-13 62.5 4.2 47 12-61 35-85 (85)
108 KOG1011|consensus 98.7 1.6E-08 3.4E-13 83.4 4.3 81 11-95 327-423 (1283)
109 cd08374 C2F_Ferlin C2 domain s 98.7 5.3E-08 1.2E-12 66.1 5.9 59 11-72 39-126 (133)
110 cd00030 C2 C2 domain. The C2 d 98.6 1.3E-07 2.7E-12 57.5 5.9 55 11-68 32-90 (102)
111 KOG1028|consensus 98.3 6.2E-07 1.3E-11 71.0 4.9 65 5-72 329-399 (421)
112 COG5038 Ca2+-dependent lipid-b 98.3 6.2E-07 1.3E-11 77.3 5.1 66 12-80 1074-1146(1227)
113 KOG1328|consensus 98.2 3.6E-07 7.9E-12 76.1 0.4 53 13-68 988-1048(1103)
114 KOG1328|consensus 98.1 5E-06 1.1E-10 69.5 4.7 80 15-96 180-301 (1103)
115 COG5038 Ca2+-dependent lipid-b 97.6 0.00022 4.8E-09 62.1 7.0 82 12-101 472-562 (1227)
116 KOG1031|consensus 97.5 0.00018 3.8E-09 59.5 4.5 54 12-67 37-96 (1169)
117 cd08689 C2_fungal_Pkc1p C2 dom 97.4 8.4E-05 1.8E-09 48.8 1.6 53 12-72 36-91 (109)
118 KOG1011|consensus 97.1 0.00078 1.7E-08 56.4 4.6 73 2-77 1154-1236(1283)
119 PLN02964 phosphatidylserine de 97.1 0.00044 9.5E-09 57.6 3.1 68 11-81 80-156 (644)
120 cd08684 C2A_Tac2-N C2 domain f 96.9 0.00025 5.4E-09 45.5 0.4 57 12-71 36-96 (103)
121 KOG2059|consensus 96.9 0.0017 3.7E-08 54.3 5.0 87 5-98 33-127 (800)
122 KOG2059|consensus 96.9 0.0032 6.9E-08 52.8 6.5 81 13-96 168-276 (800)
123 PF00792 PI3K_C2: Phosphoinosi 96.9 0.0035 7.6E-08 42.4 5.7 63 14-78 23-100 (142)
124 cd08397 C2_PI3K_class_III C2 d 96.8 0.0042 9.2E-08 43.2 5.5 53 23-77 58-121 (159)
125 cd08380 C2_PI3K_like C2 domain 96.7 0.014 3E-07 40.0 7.7 54 23-78 56-122 (156)
126 cd08398 C2_PI3K_class_I_alpha 96.4 0.0099 2.2E-07 41.4 5.2 53 23-77 53-120 (158)
127 KOG1013|consensus 96.3 0.00081 1.8E-08 51.9 -0.4 66 4-71 123-194 (362)
128 PF14429 DOCK-C2: C2 domain in 96.3 0.037 8E-07 38.9 8.0 64 11-77 59-135 (184)
129 cd08693 C2_PI3K_class_I_beta_d 96.1 0.043 9.4E-07 38.6 7.6 61 14-77 47-134 (173)
130 cd08694 C2_Dock-A C2 domains f 96.1 0.03 6.5E-07 40.4 6.6 65 11-78 53-132 (196)
131 cd08695 C2_Dock-B C2 domains f 95.9 0.054 1.2E-06 38.9 7.4 63 11-76 53-128 (189)
132 cd08679 C2_DOCK180_related C2 95.7 0.091 2E-06 36.9 7.7 63 15-80 56-134 (178)
133 cd04012 C2A_PI3K_class_II C2 d 95.5 0.067 1.5E-06 37.4 6.4 53 24-78 62-134 (171)
134 KOG0905|consensus 95.5 0.0072 1.6E-07 53.4 1.7 62 5-68 1555-1622(1639)
135 KOG3837|consensus 95.5 0.077 1.7E-06 42.5 7.2 91 6-102 400-509 (523)
136 cd08399 C2_PI3K_class_I_gamma 95.3 0.072 1.6E-06 37.8 6.0 53 22-76 56-135 (178)
137 cd08683 C2_C2cd3 C2 domain fou 95.2 0.03 6.5E-07 38.2 3.6 53 12-67 49-130 (143)
138 KOG1327|consensus 94.9 0.052 1.1E-06 44.4 4.9 80 13-95 43-131 (529)
139 KOG1013|consensus 94.7 0.02 4.4E-07 44.4 2.0 62 12-82 271-338 (362)
140 cd08696 C2_Dock-C C2 domains f 94.3 0.51 1.1E-05 33.6 8.2 51 11-64 54-116 (179)
141 cd08697 C2_Dock-D C2 domains f 93.3 0.87 1.9E-05 32.6 8.0 63 11-76 56-137 (185)
142 PF15627 CEP76-C2: CEP76 C2 do 92.5 0.89 1.9E-05 31.7 7.0 88 10-100 44-154 (156)
143 KOG1326|consensus 90.2 0.088 1.9E-06 45.9 0.1 30 43-72 939-972 (1105)
144 KOG1326|consensus 89.2 0.087 1.9E-06 45.9 -0.6 49 15-66 651-703 (1105)
145 PF11618 DUF3250: Protein of u 87.0 4.5 9.8E-05 26.3 6.5 78 13-96 13-105 (107)
146 KOG1327|consensus 86.2 0.63 1.4E-05 38.3 2.5 57 12-69 175-236 (529)
147 KOG0906|consensus 84.7 0.55 1.2E-05 39.8 1.6 50 27-78 79-139 (843)
148 smart00142 PI3K_C2 Phosphoinos 83.7 1.1 2.3E-05 28.6 2.3 29 23-53 60-91 (100)
149 KOG1329|consensus 79.5 3.6 7.8E-05 35.9 4.6 81 14-98 153-242 (887)
150 cd08687 C2_PKN-like C2 domain 78.9 12 0.00025 24.2 5.8 61 23-95 31-92 (98)
151 PF12416 DUF3668: Cep120 prote 75.0 20 0.00043 28.0 7.3 81 14-97 32-133 (340)
152 PF13860 FlgD_ig: FlgD Ig-like 74.1 17 0.00036 22.0 8.5 62 32-96 14-78 (81)
153 cd05137 RasGAP_CLA2_BUD2 CLA2/ 69.3 10 0.00022 30.2 4.6 40 56-96 1-44 (395)
154 PF10358 NT-C2: N-terminal C2 61.8 42 0.00091 21.9 9.3 79 14-97 41-136 (143)
155 PF06051 DUF928: Domain of Unk 52.5 75 0.0016 22.5 6.2 44 32-77 38-81 (189)
156 PF04525 Tub_2: Tubby C 2; In 35.8 1E+02 0.0022 21.3 4.8 12 72-83 53-64 (187)
157 PF15625 CC2D2AN-C2: CC2D2A N- 34.6 1.5E+02 0.0033 20.4 6.4 47 21-70 60-109 (168)
158 PF10382 DUF2439: Protein of u 31.7 1.1E+02 0.0023 18.7 3.8 21 45-65 31-51 (83)
159 PF07100 ASRT: Anabaena sensor 27.1 2E+02 0.0043 19.3 6.1 45 39-85 37-82 (121)
160 PRK12812 flgD flagellar basal 26.5 2.8E+02 0.0061 20.8 9.4 61 32-95 130-193 (259)
161 PF14924 DUF4497: Protein of u 22.9 86 0.0019 20.1 2.3 41 54-94 47-104 (112)
162 KOG0904|consensus 21.9 69 0.0015 28.6 2.1 49 22-72 390-465 (1076)
163 PF11141 DUF2914: Protein of u 21.5 1.7E+02 0.0038 17.0 3.3 23 42-64 43-65 (66)
164 KOG4134|consensus 21.2 74 0.0016 23.8 1.9 55 54-108 56-113 (253)
165 PF03646 FlaG: FlaG protein; 20.2 1.7E+02 0.0038 18.3 3.3 30 27-59 53-83 (107)
166 COG4076 Predicted RNA methylas 20.2 3.7E+02 0.008 19.9 6.1 28 23-52 175-205 (252)
No 1
>KOG0169|consensus
Probab=99.95 E-value=8.5e-28 Score=195.63 Aligned_cols=93 Identities=35% Similarity=0.711 Sum_probs=89.0
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEe
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISL 76 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L 76 (109)
|+|+|.||.+ ++|+++++||+||.|+|+ |+|+ +..||+|+|+|.|+|+| |+|+||+|+|+.+|++|||||||
T Consensus 649 I~Gvp~D~~~--~~Tk~v~~NgfnP~W~e~-f~F~-l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL 724 (746)
T KOG0169|consen 649 IAGVPADCAE--QKTKVVKNNGFNPIWDEE-FEFQ-LSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYRHVPL 724 (746)
T ss_pred Ecccccchhh--hhceeeccCCcCcccCCe-EEEE-EeccceeEEEEEEEecCCCCcccccceeeccHHHhhCceeeeee
Confidence 6899999985 489999999999999997 9998 99999999999999998 89999999999999999999999
Q ss_pred ecCCCCCCCCCEEEEEEEEEE
Q psy16205 77 RTEANFPMSLPMLFCNIELKI 97 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~~~ 97 (109)
++..|+.+..++|||+|++.+
T Consensus 725 ~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 725 LSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCCCCccccceeEEEEEEEec
Confidence 999999999999999999874
No 2
>PLN02223 phosphoinositide phospholipase C
Probab=99.93 E-value=3.4e-26 Score=182.58 Aligned_cols=90 Identities=33% Similarity=0.566 Sum_probs=84.0
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEe
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISL 76 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L 76 (109)
|+|+|.|+.+ +||+ |.+||+||+|||+ |.|+ |.+|++|+|+|+|+|+| ++++||+++|+++|++|||+|||
T Consensus 443 I~Gvp~D~~~--~kT~-v~nNg~nPvWne~-F~F~-i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~VpL 517 (537)
T PLN02223 443 IAGVPHDEKI--MKTT-VKNNEWKPTWGEE-FTFP-LTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGIRAVPL 517 (537)
T ss_pred EeeccCCcce--eEEE-eCCCCcCceecce-eEEE-EEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCceeEec
Confidence 6899999963 4675 7789999999998 9998 99999999999999987 78999999999999999999999
Q ss_pred ecCCCCCCCCCEEEEEEEE
Q psy16205 77 RTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~ 95 (109)
+|..|+++..++|||++++
T Consensus 518 ~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 518 YDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCcCCCCCceEEEEEEe
Confidence 9999999999999999986
No 3
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.93 E-value=9.7e-26 Score=182.21 Aligned_cols=90 Identities=27% Similarity=0.537 Sum_probs=83.8
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEe
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISL 76 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L 76 (109)
|+|+|.|+.+ .||++ .+||+||+|||+ |.|+ +..||+|+|+|.|+|+| ++++||+++|+.+|++|||+|||
T Consensus 504 i~Gvp~D~~~--~kT~v-~~n~~nP~Wnee-f~F~-l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~L 578 (598)
T PLN02230 504 IAGAPVDEVM--EKTKI-EYDTWTPIWNKE-FIFP-LAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIHAVPL 578 (598)
T ss_pred EEECCCCCcc--cceec-cCCCCCCccCCe-eEEE-EEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccceEec
Confidence 6899999975 47885 567899999998 9998 99999999999999987 88999999999999999999999
Q ss_pred ecCCCCCCCCCEEEEEEEE
Q psy16205 77 RTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~ 95 (109)
+|..|+++..++|||++++
T Consensus 579 ~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 579 FNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred cCCCcCCCCCCeeEEEEEe
Confidence 9999999999999999986
No 4
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.92 E-value=2.2e-25 Score=179.80 Aligned_cols=90 Identities=29% Similarity=0.476 Sum_probs=84.4
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEe
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISL 76 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L 76 (109)
|+|+|.|+.+ .||+++.+| +||+|||+ |.|. +..|++|+|+|.|+|+| ++++|++++|+++|++|||+|||
T Consensus 487 i~G~p~D~~~--~rTk~v~nn-~nP~W~e~-f~F~-i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V~L 561 (581)
T PLN02222 487 IAGVPGDTVM--KKTKTLEDN-WIPAWDEV-FEFP-LTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIRAFPL 561 (581)
T ss_pred EeccCCCcce--eeeEecCCC-CCcccCCe-eEEE-EEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccceEEc
Confidence 5899999974 489999876 89999997 9998 99999999999999986 78999999999999999999999
Q ss_pred ecCCCCCCCCCEEEEEEEE
Q psy16205 77 RTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~ 95 (109)
+|.+|+++..++|||++++
T Consensus 562 ~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 562 HSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred cCCCcCCCCCeeEEEEEEe
Confidence 9999999999999999986
No 5
>PLN02228 Phosphoinositide phospholipase C
Probab=99.91 E-value=1.6e-24 Score=174.39 Aligned_cols=93 Identities=33% Similarity=0.576 Sum_probs=85.3
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEE-CccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEE
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVY-NEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHIS 75 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvW-ne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~ 75 (109)
|+|+|.|+. ++||+++.+ ++||+| ||+ |.|. +..|++|+|+|+|+|+| ++++|++++|+.+|++|||+||
T Consensus 466 i~G~p~D~~--~~rTk~~~n-~~nP~W~~e~-f~F~-~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR~Vp 540 (567)
T PLN02228 466 IAGVPRDTV--SYRTETAVD-QWFPIWGNDE-FLFQ-LRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVRAVR 540 (567)
T ss_pred EEecCCCCC--cceeeccCC-CCCceECCCe-EEEE-EEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCeeEEE
Confidence 579999996 468998864 699999 997 9998 99999999999999987 7899999999999999999999
Q ss_pred eecCCCCCCCCCEEEEEEEEEEc
Q psy16205 76 LRTEANFPMSLPMLFCNIELKIY 98 (109)
Q Consensus 76 L~d~~g~~~~~~~l~v~i~~~~~ 98 (109)
|+|..|+++..++|||++++.+.
T Consensus 541 L~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 541 LHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred ccCCCCCCCCCeEEEEEEEEcCc
Confidence 99999999999999999998743
No 6
>PLN02952 phosphoinositide phospholipase C
Probab=99.91 E-value=3.8e-24 Score=173.15 Aligned_cols=90 Identities=29% Similarity=0.534 Sum_probs=84.2
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEe
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISL 76 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L 76 (109)
|+|+|.|+.+ .||+++.+| +||+|||+ |.|+ +..|++|+|+|.|+|+| ++++|++++|+++|++|||++||
T Consensus 505 i~G~p~D~~~--~kTkvi~nN-~nPvWnE~-F~F~-i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR~VpL 579 (599)
T PLN02952 505 IVGVPADNAK--KKTKIIEDN-WYPAWNEE-FSFP-LTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGIRSVPL 579 (599)
T ss_pred EeccCCCCcc--eeeeeccCC-CCcccCCe-eEEE-EEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCceeEeC
Confidence 5899999974 489999876 99999998 9998 99999999999999987 78999999999999999999999
Q ss_pred ecCCCCCCCCCEEEEEEEE
Q psy16205 77 RTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~ 95 (109)
+|..|++++.++|||++++
T Consensus 580 ~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 580 HDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred cCCCCCCCCCEEEEEEEEe
Confidence 9999999999999999986
No 7
>KOG1265|consensus
Probab=99.90 E-value=1.2e-24 Score=179.26 Aligned_cols=105 Identities=67% Similarity=1.160 Sum_probs=101.6
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCCCCeeEEEEEeCCccCCcceEEEeecCC
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQRILPLDGLQAGYRHISLRTEA 80 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d~~~iG~~~lpl~~l~~G~r~v~L~d~~ 80 (109)
++|+|.|..|+++||+++.+|++||+|+|++|.|..|..|++|.|+|.||++.+.+||+..+|+..|+.|||||-|+++.
T Consensus 728 mfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEggK~ig~RIlpvd~l~~GYrhv~LRse~ 807 (1189)
T KOG1265|consen 728 MFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEGGKFIGQRILPVDGLNAGYRHVCLRSES 807 (1189)
T ss_pred ecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccCCceeeeeccchhcccCcceeEEecCCC
Confidence 68999999999999999999999999999889998899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEEEEEEccCCCcCC
Q psy16205 81 NFPMSLPMLFCNIELKIYVPDGFEG 105 (109)
Q Consensus 81 g~~~~~~~l~v~i~~~~~~~~~~~~ 105 (109)
++++..+.|||++.+++|+||++.+
T Consensus 808 Nqpl~lp~Lfv~i~~kdyvpd~~~d 832 (1189)
T KOG1265|consen 808 NQPLTLPALFVYIVLKDYVPDDLSD 832 (1189)
T ss_pred CCccccceeEEEEEeeccCCchhhh
Confidence 9999999999999999999999865
No 8
>KOG1264|consensus
Probab=99.86 E-value=3.4e-22 Score=164.30 Aligned_cols=95 Identities=34% Similarity=0.658 Sum_probs=87.5
Q ss_pred CcccCCCCccceEeeeeecCCCCCCEEC-ccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEE
Q psy16205 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYN-EEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHIS 75 (109)
Q Consensus 1 i~g~~~d~~~~k~kT~~i~~ng~nPvWn-e~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~ 75 (109)
|+|.+.|.. +++|++|..||+||+|| |+ |+|+ |.+|+.|+|+|.|+|.| ..||||++.|+.+++.|||.||
T Consensus 1093 iiGa~~Dt~--~~~t~~V~dNGlnPiWn~e~-ftFe-I~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfRsVp 1168 (1267)
T KOG1264|consen 1093 IIGAEYDTN--KFKTTVVNDNGLNPIWNPEK-FTFE-IYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGFRSVP 1168 (1267)
T ss_pred EeccccCCC--ceEEEEeccCCCCCCCCCcc-eEEE-eeCCceEEEEEEEecccccCCcceeeeeecchhhhhccceeee
Confidence 578899986 56888888999999999 76 9998 99999999999999998 5599999999999999999999
Q ss_pred eecCCCCCCCCCEEEEEEEEEEcc
Q psy16205 76 LRTEANFPMSLPMLFCNIELKIYV 99 (109)
Q Consensus 76 L~d~~g~~~~~~~l~v~i~~~~~~ 99 (109)
|.+.+.+.+..++|+|.+++....
T Consensus 1169 LkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1169 LKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred cccCchhhhhhhhheeeeEecccc
Confidence 999999999999999999997543
No 9
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.77 E-value=3.6e-18 Score=112.89 Aligned_cols=84 Identities=48% Similarity=0.898 Sum_probs=76.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcceEEEeecCCCCCCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGYRHISLRTEANFPMSLP 87 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~r~v~L~d~~g~~~~~~ 87 (109)
.++||+++.++++||+|||+ |.|. +..++.+.|.|+|+|.+ +++||++.++++.+..|+++++|++..|++...+
T Consensus 42 ~~~kT~~~~~~~~~P~w~e~-f~f~-~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~~~~~l~~~~~~~~~~~ 119 (128)
T cd00275 42 AKFKTKVVKNNGFNPVWNET-FEFD-VTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRHVPLLDSKGEPLELS 119 (128)
T ss_pred CcEeeeeecCCCcCCccCCc-EEEE-EeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCceEEEEecCCCCCCCcce
Confidence 35789998877779999997 9998 88888889999999987 7999999999999999999999999999988899
Q ss_pred EEEEEEEEE
Q psy16205 88 MLFCNIELK 96 (109)
Q Consensus 88 ~l~v~i~~~ 96 (109)
+|+|+++++
T Consensus 120 ~l~v~~~~~ 128 (128)
T cd00275 120 TLFVHIDIT 128 (128)
T ss_pred eEEEEEEEC
Confidence 999999863
No 10
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.63 E-value=1.9e-15 Score=100.89 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=54.2
Q ss_pred CccceEeeeeecCCCCCCEECccceEEeEEecC---CCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEee
Q psy16205 8 TIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLP---DLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLR 77 (109)
Q Consensus 8 ~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~---~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~ 77 (109)
...+++||+++ +|++||+|||+ |.|. +... +.+.|+|.|+|+| +++||++.+|++++..+- .|+||.
T Consensus 35 ~k~~k~kTkv~-~~tlnPvwNE~-f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 35 DKKRKFATKSK-NNNWSPKYNET-FQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred ccccEeeeEEe-cCCCCCccCcE-EEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 33345688877 57899999998 9998 8643 4478999999986 789999999999998876 466664
Q ss_pred c
Q psy16205 78 T 78 (109)
Q Consensus 78 d 78 (109)
.
T Consensus 112 ~ 112 (120)
T cd08395 112 R 112 (120)
T ss_pred C
Confidence 3
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.58 E-value=2.3e-14 Score=95.71 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=64.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCC-ccCCcc---eEEEeecCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLD-GLQAGY---RHISLRTEANF 82 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~-~l~~G~---r~v~L~d~~g~ 82 (109)
.++||+++.+++.||+|||+ |.|. +... ...|.|+|||+| +++||++.+|+. .+.+|. .|++|...+++
T Consensus 33 ~~~kT~v~~~~~~nP~WNe~-F~f~-v~~~-~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~ 109 (121)
T cd04016 33 AVYETPTAYNGAKNPRWNKT-IQCT-LPEG-VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE 109 (121)
T ss_pred EEEEeEEccCCCCCCccCeE-EEEE-ecCC-CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC
Confidence 35799999877899999998 9998 8643 467999999998 789999999995 687775 58999887776
Q ss_pred CCCCCEEEEEEE
Q psy16205 83 PMSLPMLFCNIE 94 (109)
Q Consensus 83 ~~~~~~l~v~i~ 94 (109)
+ ..+.|++.++
T Consensus 110 ~-~~g~i~l~l~ 120 (121)
T cd04016 110 D-KEGMINLVFS 120 (121)
T ss_pred C-CceEEEEEEe
Confidence 5 3466666554
No 12
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.56 E-value=4.5e-14 Score=97.92 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=68.5
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcc---eEEEeecCCCCCCC-
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGY---RHISLRTEANFPMS- 85 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~~- 85 (109)
.||+++++ +.||+|||+ |.|. +..+ ...|.|+|+|+| +++||++.+|++.+..|. +|++|.+.++++..
T Consensus 72 ~rT~v~~~-~~nP~WnE~-F~~~-~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~ 147 (158)
T cd04015 72 ARTRVIEN-SENPVWNES-FHIY-CAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKP 147 (158)
T ss_pred eEEEEeCC-CCCCccceE-EEEE-ccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCC
Confidence 58999875 599999997 9997 6543 367999999998 889999999999998886 68999999998877
Q ss_pred CCEEEEEEEEE
Q psy16205 86 LPMLFCNIELK 96 (109)
Q Consensus 86 ~~~l~v~i~~~ 96 (109)
.+.|.+.++++
T Consensus 148 ~~~l~v~~~f~ 158 (158)
T cd04015 148 GAKIRVSLQFT 158 (158)
T ss_pred CCEEEEEEEEC
Confidence 68999998863
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.55 E-value=4.9e-14 Score=93.65 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=63.8
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEec-----CCCcEEEEEEEeCC----CCeeEEEEEeCCccC--Ccc---eEEEe
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVL-----PDLAVLRFGVYDEN----GKLLGQRILPLDGLQ--AGY---RHISL 76 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~-----~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~--~G~---r~v~L 76 (109)
.++||+++++ +.||+|||+ |.|. +.. +....|.|+|||++ +++||++.+|++.+. .|. +|++|
T Consensus 31 ~~~kT~v~~~-t~nP~Wne~-f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L 107 (126)
T cd08682 31 EKYSTSVKEK-TTSPVWKEE-CSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL 107 (126)
T ss_pred eeeeeeeecC-CCCCEeCce-EEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEEC
Confidence 4579998875 599999998 9998 866 35578999999997 789999999999987 453 68999
Q ss_pred ecCCCCCC-CCCEEEEEE
Q psy16205 77 RTEANFPM-SLPMLFCNI 93 (109)
Q Consensus 77 ~d~~g~~~-~~~~l~v~i 93 (109)
.+..+++- ..+.|.+.+
T Consensus 108 ~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 108 ESKPGKDDKERGEIEVDI 125 (126)
T ss_pred cCCCCCCccccceEEEEe
Confidence 87665433 357777766
No 14
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.54 E-value=1.6e-13 Score=91.11 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=71.3
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEANF 82 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~ 82 (109)
++||+++++ +.||+|||+ |.|. +..+ +...|.|+|||++ +++||++.++++.+..+. .++||.+..+.
T Consensus 27 ~~kT~v~~~-~~nP~Wne~-f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~ 103 (127)
T cd08373 27 KKKTRVLEN-ELNPVWNET-FEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGR 103 (127)
T ss_pred eeecceeCC-CcCCcccce-EEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCC
Confidence 478998865 699999997 9998 8654 4578999999987 789999999999988765 47899998887
Q ss_pred CCCCCEEEEEEEEEEccCCCc
Q psy16205 83 PMSLPMLFCNIELKIYVPDGF 103 (109)
Q Consensus 83 ~~~~~~l~v~i~~~~~~~~~~ 103 (109)
++. +.|++.+++.+...++.
T Consensus 104 ~~~-~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 104 PTG-ATISLEVSYQPPDGAVG 123 (127)
T ss_pred ccc-EEEEEEEEEeCCCCccC
Confidence 654 78888888875555543
No 15
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.53 E-value=8.6e-14 Score=95.87 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=68.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCc-------ceEEEeecC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAG-------YRHISLRTE 79 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G-------~r~v~L~d~ 79 (109)
+++||+++.+++.||+|||+ |.|. +..+....|.|.|+|++ +++||++.+||+.+..+ -+|+||.+.
T Consensus 32 ~~~kTk~~~~~t~nP~WNE~-F~f~-v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 32 QVLRTRPSQTRNGNPSWNEE-LMFV-AAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109 (150)
T ss_pred EEeeeEeccCCCCCCcccCc-EEEE-ecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence 35689988765799999998 9998 87666678999999987 78999999999998754 478999987
Q ss_pred CC-----CC-CCCCEEEEEEEEE
Q psy16205 80 AN-----FP-MSLPMLFCNIELK 96 (109)
Q Consensus 80 ~g-----~~-~~~~~l~v~i~~~ 96 (109)
.+ ++ ...+.|.+.+.+.
T Consensus 110 ~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 110 GGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred CCcccccccCcccccEEEEEEec
Confidence 65 22 3468888888775
No 16
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.53 E-value=9.6e-14 Score=91.55 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=66.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEANFP 83 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~ 83 (109)
..+||+++++ +.||+|||+ |.|. +..+. ..|.|+|||+| +++||++.++++.+..|. .+++|.+..+..
T Consensus 33 ~~~kT~~~~~-t~nP~Wne~-f~f~-v~~~~-~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~ 108 (121)
T cd04042 33 TVYKSKTIYK-NLNPVWDEK-FTLP-IEDVT-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDE 108 (121)
T ss_pred EEEEeeeccC-CCCCcccee-EEEE-ecCCC-CeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCcc
Confidence 3578998865 799999997 9998 86543 68999999997 789999999999998664 579998877632
Q ss_pred CCCCEEEEEEEEE
Q psy16205 84 MSLPMLFCNIELK 96 (109)
Q Consensus 84 ~~~~~l~v~i~~~ 96 (109)
..+.|.+.+.++
T Consensus 109 -~~G~l~l~~~~~ 120 (121)
T cd04042 109 -DLGYISLVVTLT 120 (121)
T ss_pred -CceEEEEEEEEC
Confidence 468888888765
No 17
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.50 E-value=1.8e-13 Score=89.99 Aligned_cols=76 Identities=30% Similarity=0.435 Sum_probs=61.4
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcce---EEEeecCCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGYR---HISLRTEANFPMS 85 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~r---~v~L~d~~g~~~~ 85 (109)
++||+++++ +.||+|||+ |.|. +..+....|+|+|||+| +++||++.+|++.+..|.+ +++|.+. +
T Consensus 36 ~~kT~vv~~-t~nP~Wne~-f~f~-i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~-----~ 107 (119)
T cd04036 36 KKRTKTIKN-SINPVWNET-FEFR-IQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ-----G 107 (119)
T ss_pred cCccceecC-CCCCccceE-EEEE-eCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCC-----C
Confidence 468998875 699999998 9998 87665678999999998 7899999999999999975 5666543 2
Q ss_pred CCEEEEEEEE
Q psy16205 86 LPMLFCNIEL 95 (109)
Q Consensus 86 ~~~l~v~i~~ 95 (109)
.+.|.+++++
T Consensus 108 ~g~l~~~~~~ 117 (119)
T cd04036 108 KEELEVEFLL 117 (119)
T ss_pred CceEEEEEEe
Confidence 4667777654
No 18
>PLN03008 Phospholipase D delta
Probab=99.48 E-value=2.2e-13 Score=113.69 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=75.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcc---eEEEeecCCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGY---RHISLRTEANFPMS 85 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~~ 85 (109)
..||++++ |+.||+|||+ |.|. +..+. +.|.|+|+|+| +++||++.+|+..+.+|. ++++|.+.+++++.
T Consensus 90 v~RTrVi~-n~~NPvWNE~-F~f~-vah~~-s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 90 LARTRVLK-NSQEPLWDEK-FNIS-IAHPF-AYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPK 165 (868)
T ss_pred eeeEEeCC-CCCCCCccee-EEEE-ecCCC-ceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCC
Confidence 46899885 5689999997 9998 77654 58999999998 899999999999999997 68999999999986
Q ss_pred -CCEEEEEEEEEEccCC
Q psy16205 86 -LPMLFCNIELKIYVPD 101 (109)
Q Consensus 86 -~~~l~v~i~~~~~~~~ 101 (109)
.+.|.|+++++++.-|
T Consensus 166 ~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 166 AETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCcEEEEEEEEEEcccc
Confidence 6899999999987544
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.46 E-value=4.5e-13 Score=89.08 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=64.7
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCC-C--cEEEEEEEeCC-----CCeeEEEEEeCCccC-Cc---ceEEEeec
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD-L--AVLRFGVYDEN-----GKLLGQRILPLDGLQ-AG---YRHISLRT 78 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~-l--~~l~f~V~d~d-----~~~iG~~~lpl~~l~-~G---~r~v~L~d 78 (109)
.++||++++ +++||+|||+ |.|. +..++ + ..|.|+|||++ +++||++.+|++.+. .| .++++|..
T Consensus 32 ~~~rT~v~~-~t~nP~Wne~-f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~ 108 (127)
T cd04022 32 QKKRTRTKP-KDLNPVWNEK-LVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK 108 (127)
T ss_pred EEecceeEc-CCCCCccceE-EEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeee
Confidence 356899886 5799999997 9998 76543 2 57999999975 689999999999987 45 36789887
Q ss_pred CCCCCCCCCEEEEEEEEEE
Q psy16205 79 EANFPMSLPMLFCNIELKI 97 (109)
Q Consensus 79 ~~g~~~~~~~l~v~i~~~~ 97 (109)
.....-..+.|.+.+.++|
T Consensus 109 ~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 109 RGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCCCccEEEEEEEEEcC
Confidence 5433334678888888764
No 20
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.45 E-value=1.3e-13 Score=91.90 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=50.0
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCcc--CCcceE
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGL--QAGYRH 73 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l--~~G~r~ 73 (109)
.|+||++.+ +++||+|||+ |.|. |+..++ ..|.|+|||.| +++||++.+|++++ ..|.++
T Consensus 47 ~k~kT~v~r-ktlnPvfnE~-f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~ 114 (118)
T cd08677 47 KEAQTALKK-LALHTQWEEE-LVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQ 114 (118)
T ss_pred cEEEcceec-CCCCCccccE-EEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccc
Confidence 467898665 6899999998 9998 977666 58999999998 89999999999975 566554
No 21
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.45 E-value=5.7e-13 Score=88.48 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=64.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCc--------ceEEEeecCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAG--------YRHISLRTEA 80 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G--------~r~v~L~d~~ 80 (109)
+.||+++++ +.||+|||+ |.|. +..+....|.|+|||+| +++||++.++++.+..+ .+|.+|.+..
T Consensus 29 ~~kT~v~~~-t~nP~Wne~-F~f~-~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 29 KGSTKAIER-TSNPEWNQV-FAFS-KDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred cccccccCC-CCCCccceE-EEEE-cCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 468998865 699999997 9998 76656688999999998 89999999999998642 3789999877
Q ss_pred CCCCCCCEEEEEEEE
Q psy16205 81 NFPMSLPMLFCNIEL 95 (109)
Q Consensus 81 g~~~~~~~l~v~i~~ 95 (109)
+.. ..+.|.+.+.+
T Consensus 106 ~~~-~~G~i~l~~~~ 119 (121)
T cd08378 106 GGR-VGGELMLAVWF 119 (121)
T ss_pred CCc-cceEEEEEEEe
Confidence 632 34677776655
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.44 E-value=2e-12 Score=86.26 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=65.7
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCC-CCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEAN-FPM 84 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g-~~~ 84 (109)
.||++ . ++.||+|||+ |.|. +..+++..+.|.|+|.+ +++||++.+|+..+..|. .|.+|..... ..-
T Consensus 36 ~kT~v-~-~~~nP~WnE~-f~f~-~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~ 111 (126)
T cd08400 36 ARTKV-R-EGPNPVWSEE-FVFD-DLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGG 111 (126)
T ss_pred EEeec-C-CCCCCccCCE-EEEe-cCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCC
Confidence 57875 4 4799999998 9997 76666677889999987 889999999999999886 5788877654 233
Q ss_pred CCCEEEEEEEEEEc
Q psy16205 85 SLPMLFCNIELKIY 98 (109)
Q Consensus 85 ~~~~l~v~i~~~~~ 98 (109)
..+.|.+.+.+.+.
T Consensus 112 ~~G~i~l~l~~~~~ 125 (126)
T cd08400 112 EWGSLRIRARYSHE 125 (126)
T ss_pred cCcEEEEEEEEEcc
Confidence 46899999988753
No 23
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.43 E-value=2.2e-12 Score=85.77 Aligned_cols=83 Identities=24% Similarity=0.408 Sum_probs=65.0
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCCC-
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEANF- 82 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~- 82 (109)
.++||+++++ +.||+|||+ |.|. +. +....|.|+|||++ +++||++.++++.+..+. .+++|....++
T Consensus 31 ~~~kT~v~~~-t~nP~Wne~-f~f~-~~-~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 106 (126)
T cd08678 31 QKYQSSTQKN-TSNPFWDEH-FLFE-LS-PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEG 106 (126)
T ss_pred cEEEeEEEec-CCCCccCce-EEEE-eC-CCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCC
Confidence 3579998875 699999997 9998 74 34567999999997 789999999999987654 46788765442
Q ss_pred CCCCCEEEEEEEEEE
Q psy16205 83 PMSLPMLFCNIELKI 97 (109)
Q Consensus 83 ~~~~~~l~v~i~~~~ 97 (109)
.-..++|.+.+.+.+
T Consensus 107 ~~~~G~l~l~~~~~~ 121 (126)
T cd08678 107 DSVSGSITVEFLFME 121 (126)
T ss_pred CCcceEEEEEEEEec
Confidence 224788999988753
No 24
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.43 E-value=1.2e-12 Score=87.99 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=61.3
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----------CCeeEEEEEeCCccCCcce---EEEee
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----------GKLLGQRILPLDGLQAGYR---HISLR 77 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----------~~~iG~~~lpl~~l~~G~r---~v~L~ 77 (109)
++.||+++++ +.||+|||+ |.|. +..++ ..|.|+|||+| +++||++.+|+.++..|.+ ++||.
T Consensus 35 ~~~rTk~~~~-~~nP~WnE~-f~f~-v~~~~-~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 35 KWVRTRTVED-SSNPRWNEQ-YTWP-VYDPC-TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred EEeEcCcccC-CCCCcceeE-EEEE-ecCCC-CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 4579999875 799999998 9998 76554 58999999984 5899999999999999864 89999
Q ss_pred cCCCCCC-CCCEEEE
Q psy16205 78 TEANFPM-SLPMLFC 91 (109)
Q Consensus 78 d~~g~~~-~~~~l~v 91 (109)
+.+++.. ..+.|.+
T Consensus 111 ~~~~~~~~~~g~l~~ 125 (126)
T cd08379 111 SLNPSGVKKMGELEC 125 (126)
T ss_pred eCCCCCccCCcEEEe
Confidence 8765443 3555543
No 25
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.42 E-value=4.2e-13 Score=87.80 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=61.3
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCc---ceEEEeecCCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAG---YRHISLRTEANFPMS 85 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G---~r~v~L~d~~g~~~~ 85 (109)
++||+++.+++.||+|||+ |.|. +..+....|.|+|||++ +++||++.++++.+..+ ..+.+|.+.. + .
T Consensus 34 ~~kT~~~~~~~~nP~Wne~-f~f~-v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~-~--~ 108 (118)
T cd08681 34 TKKTKTDFRGGQHPEWDEE-LRFE-ITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKG-R--Y 108 (118)
T ss_pred ccccccccCCCCCCccCce-EEEE-ecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEeccCC-c--E
Confidence 4688888777899999997 9998 87766678999999987 68999999999987655 2567877532 2 3
Q ss_pred CCEEEEEEE
Q psy16205 86 LPMLFCNIE 94 (109)
Q Consensus 86 ~~~l~v~i~ 94 (109)
.+.|.+.++
T Consensus 109 ~G~i~l~l~ 117 (118)
T cd08681 109 AGEVYLELT 117 (118)
T ss_pred eeEEEEEEE
Confidence 457777665
No 26
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.41 E-value=5.3e-13 Score=89.09 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=51.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEe
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISL 76 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L 76 (109)
.++||++++ +++||+|||+ |.|. +...++ ..|.|+|||+| +++||++.+++.++...- .|+||
T Consensus 53 ~~~kT~v~~-~t~nP~wnE~-f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 53 SKRKTSIKR-NTTNPVYNET-LKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cceEeeeee-CCCCCcccce-EEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 356899775 5799999998 9998 866544 47999999998 789999999999986543 56776
No 27
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.40 E-value=3.9e-12 Score=88.38 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=66.5
Q ss_pred ccceEeeeeecCCCCCCEECccceEEeEEecCC--------CcEEEEEEEeCC-----CCeeEEEEEeCCccCCcc---e
Q psy16205 9 IRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD--------LAVLRFGVYDEN-----GKLLGQRILPLDGLQAGY---R 72 (109)
Q Consensus 9 ~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~--------l~~l~f~V~d~d-----~~~iG~~~lpl~~l~~G~---r 72 (109)
...+.||+++++ ++||+|||+ |.|. |.... -..|.|+|||++ |++||++.++|..+.... .
T Consensus 39 ~~~k~KT~v~k~-TlnPvfNE~-f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~ 115 (155)
T cd08690 39 EPQSGKTSTIKD-TNSPEYNES-FKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHE 115 (155)
T ss_pred CCceeecCcccC-CCCCcccce-EEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceE
Confidence 335689998875 799999997 9998 85442 135999999996 799999999999996553 4
Q ss_pred EEEeecCCCCCCCCCEEEEEEEEEEcc
Q psy16205 73 HISLRTEANFPMSLPMLFCNIELKIYV 99 (109)
Q Consensus 73 ~v~L~d~~g~~~~~~~l~v~i~~~~~~ 99 (109)
+++|++ |....++.|.|++.+.+.+
T Consensus 116 ~~~L~~--~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 116 SVDLMD--GRKATGGKLEVKVRLREPL 140 (155)
T ss_pred EEEhhh--CCCCcCCEEEEEEEecCCC
Confidence 688886 4444578898888876443
No 28
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.40 E-value=6.5e-13 Score=86.80 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=50.5
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC-cEEEEEEEeCC----CCeeEEEEEeCCccCCcce
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL-AVLRFGVYDEN----GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l-~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r 72 (109)
.++||+++++ ++||+|||+ |.|. +...+. ..|.|.|||+| +++||++.++|+.|..++.
T Consensus 37 ~~~kT~v~~~-t~nPvWne~-f~f~-v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 37 RVFRTSWRRH-TLNPVFNER-LAFE-VYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred EeEeeeeecC-CCCCcccce-EEEE-EeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 4579998876 699999998 9998 865544 47999999998 8999999999999998873
No 29
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.40 E-value=3.3e-12 Score=83.45 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=65.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc-eEEEeecCCCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY-RHISLRTEANFPMSL 86 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~-r~v~L~d~~g~~~~~ 86 (109)
+++|+++++ +.||.|||+ |.|. +... ...+.|+|||++ +++||++.+++..+..|. ++.+|.+..+.....
T Consensus 34 ~~~T~~~~~-t~nP~W~e~-f~~~-~~~~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 109 (119)
T cd08377 34 RLQTHTIYK-TLNPEWNKI-FTFP-IKDI-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYALKDKKLRTRAK 109 (119)
T ss_pred eeecceecC-CcCCccCcE-EEEE-ecCc-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCCceEEECcccCCCCcee
Confidence 468998875 699999998 9997 6432 468999999987 789999999999998886 578998877665567
Q ss_pred CEEEEEEEE
Q psy16205 87 PMLFCNIEL 95 (109)
Q Consensus 87 ~~l~v~i~~ 95 (109)
++|.+.+++
T Consensus 110 G~i~l~~~~ 118 (119)
T cd08377 110 GSILLEMDV 118 (119)
T ss_pred eEEEEEEEe
Confidence 888887765
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.38 E-value=1.2e-12 Score=87.01 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=48.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEE-ecC--CCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKV-VLP--DLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v-~~~--~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
.++||+++++ ++||+|||+ |.|. + +.. ....|+|+|||+| +++||++.+|++.+..+.
T Consensus 49 ~~~kT~v~~~-~~nP~wnE~-F~f~-~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~ 113 (122)
T cd08381 49 TKRKTKVVRK-TRNPTFNEM-LVYD-GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ 113 (122)
T ss_pred CceeCCccCC-CCCCCcccE-EEEe-cCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC
Confidence 3578998865 699999998 9997 6 322 4478999999998 889999999999988664
No 31
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.38 E-value=2.3e-12 Score=88.70 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=53.9
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEE-eCC----CCeeEEEEEeCCccCCcc---eEEEeecCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVY-DEN----GKLLGQRILPLDGLQAGY---RHISLRTEAN 81 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~-d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g 81 (109)
.+.||++++ +++||+|||+ |.|. +. .....|.|+|| |.+ +++||++.++|+.+..+. .|.+|.++..
T Consensus 67 ~k~KT~v~k-ktlnPvfNE~-F~f~-v~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 67 AKKKTKIAR-KTLDPLYQQQ-LVFD-VS-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred cceeceecC-CCCCCccCCe-EEEE-Ec-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 357999886 5799999998 9998 87 55578999999 454 789999999999997664 5677776543
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.38 E-value=4.6e-12 Score=82.64 Aligned_cols=77 Identities=19% Similarity=0.419 Sum_probs=60.7
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEANFP 83 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~ 83 (109)
.++||+++++ +.||+|||+ |.|. +..+....|.|+|||++ +++||++.++++.+..+- .+++|.+.
T Consensus 32 ~~~kT~v~~~-t~nP~Wne~-f~f~-~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~---- 104 (116)
T cd08376 32 EKYKSKVCSK-TLNPQWLEQ-FDLH-LFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG---- 104 (116)
T ss_pred EeEecccccC-CCCCceeEE-EEEE-ecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC----
Confidence 3578988764 799999997 9998 87665688999999997 799999999999988765 35666654
Q ss_pred CCCCEEEEEEEEE
Q psy16205 84 MSLPMLFCNIELK 96 (109)
Q Consensus 84 ~~~~~l~v~i~~~ 96 (109)
.+.|++.+.++
T Consensus 105 --~G~~~~~~~~~ 115 (116)
T cd08376 105 --EGSLLLLLTLT 115 (116)
T ss_pred --CcEEEEEEEec
Confidence 26677776553
No 33
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.37 E-value=3.3e-12 Score=87.93 Aligned_cols=69 Identities=28% Similarity=0.455 Sum_probs=55.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEec-----------C--C--CcEEEEEEEeCC----CCeeEEEEEeCCccCCc--
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVL-----------P--D--LAVLRFGVYDEN----GKLLGQRILPLDGLQAG-- 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~-----------~--~--l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G-- 70 (109)
++||+++++ ++||+|||+ |.|. +.. | + ...|.|.|||++ +++||++.+|++.+..+
T Consensus 36 ~~kT~v~~~-t~nP~wNE~-F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~ 112 (148)
T cd04010 36 TKRTKVKKK-TNNPQFDEA-FYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG 112 (148)
T ss_pred ccCCccEeC-CCCCccceE-EEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCC
Confidence 468998865 799999998 9998 741 1 2 257999999987 78999999999999976
Q ss_pred --ceEEEeecCCCCC
Q psy16205 71 --YRHISLRTEANFP 83 (109)
Q Consensus 71 --~r~v~L~d~~g~~ 83 (109)
-.|.+|.+.....
T Consensus 113 ~~~~W~~L~~~~~~~ 127 (148)
T cd04010 113 SHQAWYFLQPREEKS 127 (148)
T ss_pred cCcceeecCCccccc
Confidence 2588987765543
No 34
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.36 E-value=1e-12 Score=87.50 Aligned_cols=63 Identities=25% Similarity=0.412 Sum_probs=50.4
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEe
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISL 76 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L 76 (109)
.++||+++++ ++||+|||+ |.|. +...++ ..|.|+|||.| +++||++.+||+.+..+. .|.+|
T Consensus 53 ~~~kT~v~~~-t~nP~~nE~-f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 53 GKRKTSVKKK-TLNPVFNET-LRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred ccccCccCcC-CCCCccCce-EEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 3468998865 699999998 9998 865443 58999999997 789999999999986553 35554
No 35
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=7.9e-12 Score=83.31 Aligned_cols=80 Identities=34% Similarity=0.480 Sum_probs=61.9
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---------eEEEeec
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---------RHISLRT 78 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---------r~v~L~d 78 (109)
++||++++ +++||+|||+ |.|. +. +....|.|+|||+| +++||++.+++.++..+- ++.+|..
T Consensus 40 ~~kT~v~~-~t~nP~Wne~-f~f~-~~-~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 40 SVQTKTIK-KTLNPKWNEE-FFFR-VN-PREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred ceeeeEEc-CCCCCcEeeE-EEEE-Ec-CCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 46898876 5799999997 9998 75 33467899999987 789999999999877542 5788886
Q ss_pred CCCCCCCCCEEEEEEEE
Q psy16205 79 EANFPMSLPMLFCNIEL 95 (109)
Q Consensus 79 ~~g~~~~~~~l~v~i~~ 95 (109)
..+..-..+.|.+.+.+
T Consensus 116 ~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 116 RSSKSRVKGHLRLYMAY 132 (133)
T ss_pred cCCCCcceeEEEEEEee
Confidence 54443456788887754
No 36
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.35 E-value=2.3e-12 Score=83.15 Aligned_cols=65 Identities=31% Similarity=0.436 Sum_probs=54.7
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC-CCeeEEEEEeCCccCCcc-----eEEEeec
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN-GKLLGQRILPLDGLQAGY-----RHISLRT 78 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d-~~~iG~~~lpl~~l~~G~-----r~v~L~d 78 (109)
+++||++++ ++.||+|||+ |.|. +..++...|.|+|+|++ +++||++.+++..+..+- ++++|.+
T Consensus 32 ~~~kT~v~~-~t~nP~Wne~-f~f~-v~~~~~~~l~v~v~d~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 32 TTQKSKVKE-RTNNPVWEEG-FTFL-VRNPENQELEIEVKDDKTGKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEeCcccc-CCCCCcccce-EEEE-eCCCCCCEEEEEEEECCCCCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 457899876 5799999997 9998 98888889999999998 889999999999886542 5677764
No 37
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.35 E-value=2.3e-12 Score=86.55 Aligned_cols=57 Identities=25% Similarity=0.399 Sum_probs=47.8
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
.++||+++++ +.||+|||+ |.|. +...++ ..|.|+|||.+ +++||++.+||+.+...
T Consensus 53 ~k~kT~v~~~-t~nPvfNE~-F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 53 SKRKTAVKKG-TVNPVFNET-LKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred ceeecccccC-CCCCccceE-EEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccC
Confidence 4578998865 699999998 9998 866544 58999999988 78999999999987543
No 38
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.34 E-value=1.3e-11 Score=81.87 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=58.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~ 84 (109)
.+||+++++ ++||+|||+ |.|. +... ...|.|.|||++ +++||.+.++++.+..+. .|++|.......-
T Consensus 35 ~~kT~v~~k-t~~P~WnE~-F~f~-v~~~-~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 110 (121)
T cd08401 35 VFRTKTVEK-SLCPFFGED-FYFE-IPRT-FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE 110 (121)
T ss_pred EEEeeEEEC-CCCCccCCe-EEEE-cCCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc
Confidence 478998765 799999998 9998 8633 468999999998 789999999999997554 5788875322111
Q ss_pred CCCEEEEEE
Q psy16205 85 SLPMLFCNI 93 (109)
Q Consensus 85 ~~~~l~v~i 93 (109)
..+.|++.+
T Consensus 111 ~~G~i~l~~ 119 (121)
T cd08401 111 VQGKVHLEL 119 (121)
T ss_pred ccEEEEEEE
Confidence 356666554
No 39
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.34 E-value=1.4e-11 Score=84.81 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=67.1
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC--------CCeeEEEEEeCCccCCcc---eEEEeecCCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN--------GKLLGQRILPLDGLQAGY---RHISLRTEAN 81 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d--------~~~iG~~~lpl~~l~~G~---r~v~L~d~~g 81 (109)
.||+++.+ +.||.|+|+ |.|. .. +....|.|.|+..+ +++||.+.||+..+..|. +|+||.+.++
T Consensus 41 aRT~v~~~-~~nP~W~E~-F~f~-~~-~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~ 116 (146)
T cd04013 41 ARTTSKLK-TDTLFWGEH-FEFS-NL-PPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKG 116 (146)
T ss_pred EEEEEEcC-CCCCcceee-EEec-CC-CcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCC
Confidence 58998864 689999997 9996 42 34567999997543 479999999999999886 7999999998
Q ss_pred CC--------CCCCEEEEEEEEEEc
Q psy16205 82 FP--------MSLPMLFCNIELKIY 98 (109)
Q Consensus 82 ~~--------~~~~~l~v~i~~~~~ 98 (109)
.+ -..++|.+++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 117 NGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CCccccccccCCCCEEEEEEEEEEe
Confidence 86 457899999998753
No 40
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.32 E-value=3.2e-12 Score=83.22 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=53.9
Q ss_pred ceEeeeeecCCCCCCEE-CccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCC---cc---eEEEee
Q psy16205 11 KEFRTRLCPSNGLNPVY-NEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQA---GY---RHISLR 77 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvW-ne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~---G~---r~v~L~ 77 (109)
.++||+++++ ++||+| ||+ |.|. +..+++ ..|.|+|||+| +++||++.+++..+.. +. +|++|.
T Consensus 32 ~~~kT~v~~~-~~nP~W~ne~-f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 32 TTYKTDVVKK-SLNPVWNSEW-FRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred eeEecceecC-CCCCcccCcE-EEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 4579998865 699999 997 9998 876654 58999999998 6899999999999876 33 578887
Q ss_pred c
Q psy16205 78 T 78 (109)
Q Consensus 78 d 78 (109)
|
T Consensus 109 ~ 109 (110)
T cd08688 109 D 109 (110)
T ss_pred c
Confidence 6
No 41
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.31 E-value=1.5e-11 Score=83.36 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=48.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQA 69 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~ 69 (109)
++||+++++ ++||.|||+ |.|. +..+....|.|+|||+| +++||++.+++..+..
T Consensus 48 ~~kT~vi~~-t~nP~Wne~-f~f~-v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 48 EHKTKVVSD-TLNPKWNSS-MQFF-VKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred eeeccccCC-CCCCccCce-EEEE-ecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 579998875 699999997 9998 87777789999999997 7899999999999875
No 42
>KOG1030|consensus
Probab=99.31 E-value=3.4e-12 Score=89.22 Aligned_cols=58 Identities=33% Similarity=0.638 Sum_probs=49.8
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcce
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r 72 (109)
++.||+++++ ++||+|||+ |.|. |..+. ..|.++|||+| +|++|.+.+|+..+.++.+
T Consensus 38 q~lkT~~v~~-n~NPeWNe~-ltf~-v~d~~-~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 38 QKLKTRVVYK-NLNPEWNEE-LTFT-VKDPN-TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred eeeeeeeecC-CCCCcccce-EEEE-ecCCC-ceEEEEEEeCCCCCcccccceeeeccHHHHHHhh
Confidence 4679998875 699999997 9998 87665 56899999999 9999999999999876654
No 43
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.30 E-value=3e-11 Score=79.83 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=57.7
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCC---cc---eEEEeecCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQA---GY---RHISLRTEAN 81 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~---G~---r~v~L~d~~g 81 (109)
.+||+++++ ++||+|||+ |.|. +..+....|.|+|||++ +++||++.+++..+.. |. ++++|..
T Consensus 37 ~~kT~~~~~-t~~P~Wne~-f~f~-i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--- 110 (126)
T cd04043 37 IAKTRTIYD-TLNPRWDEE-FELE-VPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--- 110 (126)
T ss_pred eecccEecC-CCCCcccce-EEEE-cCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC---
Confidence 468998875 699999998 9998 86655678999999987 7899999999987532 32 4666642
Q ss_pred CCCCCCEEEEEEEEE
Q psy16205 82 FPMSLPMLFCNIELK 96 (109)
Q Consensus 82 ~~~~~~~l~v~i~~~ 96 (109)
.+.+.+++.+.
T Consensus 111 ----~g~i~l~~~~~ 121 (126)
T cd04043 111 ----QGRLLLRVSME 121 (126)
T ss_pred ----CCeEEEEEEEe
Confidence 35677777664
No 44
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.30 E-value=3.4e-12 Score=83.20 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=52.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC---CcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEee
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD---LAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISLR 77 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~---l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L~ 77 (109)
.+||+++++ ++||+|||+ |.|. +..++ ...|.|+|||+| +++||++.++++.+.+--++.|++
T Consensus 38 ~~kT~v~~~-t~nP~Wne~-f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~ 107 (111)
T cd04041 38 LYSTRIIRK-DLNPVWEET-WFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNWMGRR 107 (111)
T ss_pred cEeeeeECC-CCCCcccee-EEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcCCCCCccc
Confidence 468998875 699999997 9997 75552 368999999998 799999999999998777777765
No 45
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.30 E-value=1.9e-11 Score=79.82 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=59.0
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcc---eEEEeecCCCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGY---RHISLRTEANFPM 84 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~ 84 (109)
.++||+++++ +.||+|||+ |.|. +..+....|.|+|||++ +++||++.+++..+..+- .+++|.+.
T Consensus 39 ~~~kT~~~~~-t~~P~W~e~-f~~~-v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----- 110 (121)
T cd08391 39 QTFKSKVIKE-NLNPKWNEV-YEAV-VDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----- 110 (121)
T ss_pred EeEEccccCC-CCCCcccce-EEEE-eCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC-----
Confidence 3578998764 799999997 9997 86656678999999997 789999999998876553 57888763
Q ss_pred CCCEEEEEEE
Q psy16205 85 SLPMLFCNIE 94 (109)
Q Consensus 85 ~~~~l~v~i~ 94 (109)
..+.|.+.++
T Consensus 111 ~~G~~~~~~~ 120 (121)
T cd08391 111 KSGRLHLKLE 120 (121)
T ss_pred CCceEEEEEe
Confidence 2355555543
No 46
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.30 E-value=2.8e-11 Score=78.95 Aligned_cols=78 Identities=21% Similarity=0.168 Sum_probs=61.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccC-Cc---ceEEEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQ-AG---YRHISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~-~G---~r~v~L~d~~g~~~ 84 (109)
.+||+++++ +.||+|||+ |.|. +..+....|.|.|+|++ +++||++.+||+.+. .+ .++++|.+ .
T Consensus 26 ~~kT~v~~~-t~nP~Wne~-f~f~-v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~-----~ 97 (111)
T cd04052 26 VYTTRVKKK-TNNPSWNAS-TEFL-VTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSG-----N 97 (111)
T ss_pred EEEEeeecc-CCCCccCCc-eEEE-ecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCC-----C
Confidence 368888764 799999998 9997 86665678999999998 789999999998873 22 46888865 2
Q ss_pred CCCEEEEEEEEEE
Q psy16205 85 SLPMLFCNIELKI 97 (109)
Q Consensus 85 ~~~~l~v~i~~~~ 97 (109)
+.+.|.+.+++.+
T Consensus 98 ~~G~i~~~~~~~p 110 (111)
T cd04052 98 GQGRIRISALWKP 110 (111)
T ss_pred CCCEEEEEEEEec
Confidence 4588888887653
No 47
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.30 E-value=3e-12 Score=84.60 Aligned_cols=71 Identities=30% Similarity=0.381 Sum_probs=58.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC----CcEEEEEEEeCC----CCeeEEEEEeCCccCCcc--------eEEE
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD----LAVLRFGVYDEN----GKLLGQRILPLDGLQAGY--------RHIS 75 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~----l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~--------r~v~ 75 (109)
+++|+++.+++.||+|||+ |.|. +..++ ...|.|+|||++ +++||++.+|+..+..+. .+.+
T Consensus 34 ~~~T~~~~~~~~~P~Wne~-f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~ 111 (125)
T cd04051 34 KQSTPVDRDGGTNPTWNET-LRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQ 111 (125)
T ss_pred ccccccccCCCCCCCCCCE-EEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEE
Confidence 4688887767899999997 9998 87664 578999999986 789999999999987665 3478
Q ss_pred eecCCCCCC
Q psy16205 76 LRTEANFPM 84 (109)
Q Consensus 76 L~d~~g~~~ 84 (109)
|.+.+|++-
T Consensus 112 l~~~~g~~~ 120 (125)
T cd04051 112 LRRPSGKPQ 120 (125)
T ss_pred eECCCCCcC
Confidence 888887753
No 48
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.30 E-value=2e-11 Score=79.40 Aligned_cols=73 Identities=33% Similarity=0.454 Sum_probs=59.5
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCc---ceEEEeecCCCCCCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAG---YRHISLRTEANFPMS 85 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G---~r~v~L~d~~g~~~~ 85 (109)
++|+++. +++||+|||+ |.|. +.......+.|+|||++ +++||++.+++..+..+ .++++|....+. .
T Consensus 34 ~~T~v~~-~~~~P~Wne~-f~~~-~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~--~ 108 (115)
T cd04040 34 FKTKTIK-KTLNPVWNES-FEVP-VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG--K 108 (115)
T ss_pred eeeceec-CCCCCccccc-EEEE-eccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc--c
Confidence 6898875 5899999997 9997 76555678999999987 78999999999998888 467898876664 3
Q ss_pred CCEEE
Q psy16205 86 LPMLF 90 (109)
Q Consensus 86 ~~~l~ 90 (109)
.+.||
T Consensus 109 ~~~~~ 113 (115)
T cd04040 109 LGAVF 113 (115)
T ss_pred CceEE
Confidence 45555
No 49
>PLN02270 phospholipase D alpha
Probab=99.28 E-value=1.7e-11 Score=102.16 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=74.8
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecC-CCcEEEEEEEeCC---CCeeEEEEEeCCccCCcc---eEEEeecCCCCCCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLP-DLAVLRFGVYDEN---GKLLGQRILPLDGLQAGY---RHISLRTEANFPMS 85 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~-~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~~ 85 (109)
.||+++.+...||+|||+ |. |++. ..+.|.|+|+|.| ..+||.+.+|+..+..|. +++|+.+.+|+++.
T Consensus 61 ~rtr~~~~~~~~p~w~e~-f~---i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~ 136 (808)
T PLN02270 61 GRTRKIENEPKNPRWYES-FH---IYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIH 136 (808)
T ss_pred EEEeecCCCCCCCccccc-eE---EeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCC
Confidence 699999776679999997 88 5455 4478999999998 789999999999999995 79999999999996
Q ss_pred -CCEEEEEEEEEEccCCC
Q psy16205 86 -LPMLFCNIELKIYVPDG 102 (109)
Q Consensus 86 -~~~l~v~i~~~~~~~~~ 102 (109)
.++|.|++++++...|.
T Consensus 137 ~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 137 GGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred CCCEEEEEEEEEEcccCc
Confidence 69999999999876654
No 50
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.28 E-value=8.5e-11 Score=78.23 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=62.1
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCc-ceEEEeecCC--CCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAG-YRHISLRTEA--NFPM 84 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G-~r~v~L~d~~--g~~~ 84 (109)
.++||++++ ++.||+|||+ |.|. +..+ ...|.|+|||++ +++||++.+++..+..+ ++.++|.... ....
T Consensus 35 ~~~kT~v~~-~t~nP~Wne~-f~f~-~~~~-~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 110 (126)
T cd04046 35 ESVRSPVQK-DTLSPEFDTQ-AIFY-RKKP-RSPIKIQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKRGRDAAGE 110 (126)
T ss_pred EEEEeCccC-CCCCCcccce-EEEE-ecCC-CCEEEEEEEECCCCCCCceEEEEEecccCCCcCceEEEcccCCCCCCCC
Confidence 357999886 4799999997 9996 6543 467999999988 89999999999876544 4678886422 2223
Q ss_pred CCCEEEEEEEEEE
Q psy16205 85 SLPMLFCNIELKI 97 (109)
Q Consensus 85 ~~~~l~v~i~~~~ 97 (109)
..++|.+++...|
T Consensus 111 ~~G~i~~~~~~~~ 123 (126)
T cd04046 111 VPGTISVKVTSSD 123 (126)
T ss_pred CCCEEEEEEEEcc
Confidence 4677888876653
No 51
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.28 E-value=1.9e-11 Score=79.47 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=52.4
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC----CcEEEEEEEeCC----CCeeEEEEEeCCccCCcc------eEEEee
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD----LAVLRFGVYDEN----GKLLGQRILPLDGLQAGY------RHISLR 77 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~----l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~------r~v~L~ 77 (109)
++||+++++ +.||+|||+ |.|. +..+. ...|.|+|||++ +++||++.++++.+..+. +|++|.
T Consensus 33 ~~kT~~~~~-t~nP~wne~-f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 33 KKYTSVKKG-TNCPFYNEY-FFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred eeeeeEEec-cCCCccccE-EEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 568998764 699999997 9997 75543 268999999997 789999999999987663 467776
Q ss_pred cC
Q psy16205 78 TE 79 (109)
Q Consensus 78 d~ 79 (109)
|+
T Consensus 110 ~~ 111 (111)
T cd04011 110 DP 111 (111)
T ss_pred Cc
Confidence 63
No 52
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.26 E-value=2.6e-11 Score=83.81 Aligned_cols=57 Identities=19% Similarity=0.475 Sum_probs=47.7
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC-cEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL-AVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l-~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
++.||+++++ ++||+|||+ |.|+ +..|.. ..|.|+|||+| +++||++.+++..+...
T Consensus 46 ~~~kT~v~~~-t~nPvWNE~-f~f~-v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 46 QKVKTSVKKN-SYNPEWNEQ-IVFP-EMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EeeecceEcC-CCCCCcceE-EEEE-eeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 3468998875 699999998 9998 877755 48999999998 89999999999876543
No 53
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.26 E-value=3.4e-12 Score=86.69 Aligned_cols=69 Identities=23% Similarity=0.325 Sum_probs=54.0
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcceEE-EeecCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHI-SLRTEANFP 83 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v-~L~d~~g~~ 83 (109)
+.||++++ +++||+|||+ |.|. |+..++ ..|+|+|+|+| +++||++.++..+..+|++|+ .++..-+++
T Consensus 53 k~kT~v~k-~t~nP~~nE~-f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 53 KKKTSVKR-DDTNPIFNEA-MIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred ccCCcccc-CCCCCeecee-EEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCe
Confidence 45888776 4699999998 9998 876544 68999999998 899999999998888887653 344443443
No 54
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.26 E-value=7.2e-11 Score=77.86 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=62.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccC----Cc--ceEEEeecCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQ----AG--YRHISLRTEA 80 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~----~G--~r~v~L~d~~ 80 (109)
.++||+++++ +.||+|||+ |.|. +..+....|.|+|||++ +++||++.+++..+. .+ -.+++|.+..
T Consensus 35 ~~~kT~~~~~-t~~P~Wne~-f~~~-~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~ 111 (128)
T cd04024 35 QRFKTQTIPN-TLNPKWNYW-CEFP-IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR 111 (128)
T ss_pred EEEecceecC-CcCCccCCc-EEEE-ecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcc
Confidence 4578998864 799999997 9998 87656689999999987 789999999998875 23 2578888763
Q ss_pred CC--CCCCCEEEEEEE
Q psy16205 81 NF--PMSLPMLFCNIE 94 (109)
Q Consensus 81 g~--~~~~~~l~v~i~ 94 (109)
.. ....+.|.++++
T Consensus 112 ~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 112 PGKTSVVSGEIHLQFS 127 (128)
T ss_pred cCccccccceEEEEEE
Confidence 22 223577777664
No 55
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.26 E-value=3.2e-12 Score=87.11 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=53.6
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcceE-EEeecCCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYRH-ISLRTEANFP 83 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~-v~L~d~~g~~ 83 (109)
.|.||++++ +++||+|||+ |.|. |+..++ ..|.|+|+|+| +++||++.+++.+..++.+| -.+++.-+++
T Consensus 54 ~kkkT~v~k-~t~nPvfNE~-f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 54 KKKQTKRAK-HKINPVWNEM-IMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred ceeccceee-CCCCCccccE-EEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCc
Confidence 356898776 4799999998 9998 976655 57999999998 89999999999886665554 3344433443
No 56
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.25 E-value=6.9e-11 Score=78.99 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=57.8
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCC--c---ceEEEeecCCCCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQA--G---YRHISLRTEANFP 83 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~--G---~r~v~L~d~~g~~ 83 (109)
.||++++ ++.||+|||+ |.|. +. +...|.|.|+|++ +++||++.++|..+.. + ..+++|.
T Consensus 49 ~kT~~~~-~t~~P~Wne~-f~~~-v~--~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------ 117 (132)
T cd04014 49 GKTSTKP-KTNSPVWNEE-FTTE-VH--NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------ 117 (132)
T ss_pred eEEeEcC-CCCCCCccee-EEEE-cC--CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------
Confidence 5788776 4799999998 9998 74 5578999999986 7899999999998886 2 3677875
Q ss_pred CCCCEEEEEEEEE
Q psy16205 84 MSLPMLFCNIELK 96 (109)
Q Consensus 84 ~~~~~l~v~i~~~ 96 (109)
+.+.|+++++++
T Consensus 118 -~~G~l~l~~~~~ 129 (132)
T cd04014 118 -PQGKLHVKIELK 129 (132)
T ss_pred -CCcEEEEEEEEe
Confidence 346788887765
No 57
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.25 E-value=8.9e-11 Score=77.42 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=53.7
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTE 79 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~ 79 (109)
+++|+++++ +.||+|||+ |.|. +..+....|.|+|||++ +++||++.+++..+..+. .|..|...
T Consensus 33 ~~kT~v~~~-t~nP~Wne~-f~f~-~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 33 TLETSVVKK-SCYPRWNEV-FEFE-LMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EEeceeecC-CCCCccCcE-EEEE-cCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCC
Confidence 478998875 699999998 9998 86666678999999987 789999999999987553 56777753
No 58
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.25 E-value=1.6e-11 Score=80.97 Aligned_cols=57 Identities=39% Similarity=0.676 Sum_probs=47.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
++||++++ ++.||+|||+ |.|. +..+++ ..|.|+|||+| +++||++.+|++.+..|.
T Consensus 52 ~~kT~v~~-~t~nP~wne~-f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~ 114 (124)
T cd08385 52 KFETKVHR-KTLNPVFNET-FTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH 114 (124)
T ss_pred ceecccCc-CCCCCceeee-EEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC
Confidence 46899876 4799999997 9998 765443 48999999987 789999999999987665
No 59
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.24 E-value=1.1e-11 Score=82.14 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=47.1
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC-cEEEEEEEeCC-----CCeeEEEEEeCCccCCcc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL-AVLRFGVYDEN-----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l-~~l~f~V~d~d-----~~~iG~~~lpl~~l~~G~ 71 (109)
.++||++++ ++.||+|||+ |.|. +...++ ..|.|+|||.+ +++||++.+|+..+..|-
T Consensus 48 ~~~kT~v~~-~t~~P~~nE~-F~f~-v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~ 111 (119)
T cd08685 48 FRQKTSTVP-DSANPLFHET-FSFD-VNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK 111 (119)
T ss_pred ceEeCcccc-CCCCCccccE-EEEE-cChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc
Confidence 356899875 5799999998 9998 865443 46889999986 579999999999987664
No 60
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.24 E-value=1.4e-11 Score=82.46 Aligned_cols=64 Identities=25% Similarity=0.372 Sum_probs=51.0
Q ss_pred cCCCCc-cceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 4 LPTDTI-RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 4 ~~~d~~-~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
+|.... +.++||+++++ ++||+|||+ |.|. |+..++ ..|.|+|||.+ +++||++.++++.+...
T Consensus 44 lp~~~~~~~~~kT~v~~~-t~nPvfnE~-F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 44 LPCSSSTSCLFRTKALED-QDKPVFNEV-FRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred ccCCCCCCceEEcCccCC-CCCCccccE-EEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 455532 24679998765 799999998 9998 876655 58999999987 88999999999988433
No 61
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.24 E-value=5.3e-11 Score=78.89 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=58.5
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC------CCeeEEEEEeCCccCC----cceEEEeecCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN------GKLLGQRILPLDGLQA----GYRHISLRTEA 80 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d------~~~iG~~~lpl~~l~~----G~r~v~L~d~~ 80 (109)
.++||+++++ +.||+|||+ |.|. +. ....|.|+|||++ +++||++.++++.+.. +..+++|.+..
T Consensus 33 ~~~kT~v~~~-t~nP~Wne~-f~~~-~~--~~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 107 (123)
T cd08382 33 QTHSTDVAKK-TLDPKWNEH-FDLT-VG--PSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLK 107 (123)
T ss_pred cceEccEEcC-CCCCcccce-EEEE-eC--CCCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCC
Confidence 4579998864 799999997 9997 74 3678999999986 3699999999999742 25689997755
Q ss_pred CC--CCCCCEEEEEE
Q psy16205 81 NF--PMSLPMLFCNI 93 (109)
Q Consensus 81 g~--~~~~~~l~v~i 93 (109)
.. ....++|.+++
T Consensus 108 ~~~~~~~~G~v~~~~ 122 (123)
T cd08382 108 KSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeeEEEEEe
Confidence 42 22245666654
No 62
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.23 E-value=3.2e-11 Score=81.15 Aligned_cols=57 Identities=32% Similarity=0.364 Sum_probs=46.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
++||+++++ +.||+|||+ |.|.....+....|.|+|||+| +++||++.+++.+...+
T Consensus 60 ~~kT~vi~~-t~nPvWNE~-F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 60 EKRTEVIWN-NNNPRWNAT-FDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred cccCceecC-CCCCcCCCE-EEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 568998865 699999998 9996233345689999999997 89999999999976655
No 63
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.21 E-value=3.3e-11 Score=79.12 Aligned_cols=58 Identities=26% Similarity=0.493 Sum_probs=47.8
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
.++||++++ +++||+|||+ |.|. +...++ ..|.|+|||++ +++||++.+++..+..+-
T Consensus 52 ~~~kT~v~~-~t~~P~wne~-f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd08521 52 SKRKTSVKK-NTTNPVFNET-LKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS 115 (123)
T ss_pred ceeeccccC-CCCCCcccce-EEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC
Confidence 356898765 5899999998 9998 865543 58999999987 789999999999996553
No 64
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.21 E-value=7.9e-11 Score=77.19 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=60.6
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceE---EEeecCCCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRH---ISLRTEANFP 83 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~---v~L~d~~g~~ 83 (109)
..+||+++.+ +.||.|||. |.|. +. +....|.|+|||++ +++||++.+++..+..+... .......+++
T Consensus 37 ~~~kT~~~~~-~~~P~Wne~-~~~~-v~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~ 112 (124)
T cd04044 37 ELARTKVKKD-TSNPVWNET-KYIL-VN-SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP 112 (124)
T ss_pred cceEeeeecC-CCCCcceEE-EEEE-eC-CCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc
Confidence 3578998864 799999997 9997 76 44578999999987 78999999999998876532 2233455553
Q ss_pred CCCCEEEEEEEEE
Q psy16205 84 MSLPMLFCNIELK 96 (109)
Q Consensus 84 ~~~~~l~v~i~~~ 96 (109)
.++|.+.+++.
T Consensus 113 --~G~i~~~l~~~ 123 (124)
T cd04044 113 --VGELNYDLRFF 123 (124)
T ss_pred --ceEEEEEEEeC
Confidence 47887777653
No 65
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.20 E-value=3.4e-11 Score=80.16 Aligned_cols=58 Identities=31% Similarity=0.587 Sum_probs=46.4
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCC--CcEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD--LAVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~--l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
.++||++++ + .||+|||+ |.|+.+...+ ...|+|+|+|++ +++||++.+||+.+..+-
T Consensus 51 ~~~kTkv~~-~-~nP~fnE~-F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~ 114 (124)
T cd08389 51 QRAKTKVQR-G-PNPVFNET-FTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG 114 (124)
T ss_pred ceeeccccc-C-CCCcccCE-EEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCC
Confidence 456898764 4 89999998 9996243233 368999999998 889999999999998774
No 66
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.19 E-value=5.7e-11 Score=80.09 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=49.7
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcc-----eEEEeec
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGY-----RHISLRT 78 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~-----r~v~L~d 78 (109)
.|.+|+++++ .||.|||+ |.|. +..++.. |.+.|||+| |++||++.+||..+..+- .|++|..
T Consensus 31 ~k~kT~v~~~--~nP~WnE~-F~F~-~~~~~~~-L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 31 VKSTTIAVRG--SQPCWEQD-FMFE-INRLDLG-LVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEeEeeECCC--CCCceeeE-EEEE-EcCCCCE-EEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 3467887754 59999997 9998 7655444 999999998 999999999999987553 4677653
No 67
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.18 E-value=2.1e-10 Score=75.84 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=58.0
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCc----ceEEEeecCCCCCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAG----YRHISLRTEANFPM 84 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G----~r~v~L~d~~g~~~ 84 (109)
+||+++++ ++||+|||. |.|. +.. ....|.|.|||++ +++||++.+++..+..+ ..|++|.......-
T Consensus 35 ~kT~v~~~-t~nP~Wne~-f~~~-~~~-~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~ 110 (121)
T cd04054 35 IRTATVWK-TLNPFWGEE-YTVH-LPP-GFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE 110 (121)
T ss_pred eeeeeEcC-CCCCcccce-EEEe-eCC-CCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc
Confidence 68999876 699999997 9997 743 3468999999997 79999999998777653 25888865332222
Q ss_pred CCCEEEEEEE
Q psy16205 85 SLPMLFCNIE 94 (109)
Q Consensus 85 ~~~~l~v~i~ 94 (109)
..+.|++.++
T Consensus 111 ~~G~i~l~~~ 120 (121)
T cd04054 111 VQGEIHLELS 120 (121)
T ss_pred cccEEEEEEE
Confidence 3466666553
No 68
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.18 E-value=6.6e-11 Score=77.92 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=52.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC--------CCeeEEEEEeCCccCCcc---eEEEeec
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN--------GKLLGQRILPLDGLQAGY---RHISLRT 78 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d--------~~~iG~~~lpl~~l~~G~---r~v~L~d 78 (109)
++||+++++ ++||+|||+ |.|. +..++...|.|+|||+| +++||++.++++.|..+- ..++|.+
T Consensus 40 ~~kT~vi~~-t~nP~wne~-f~f~-~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 40 IGRTEVIKN-NLNPDFVTT-FTVD-YYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred eccEeEeCC-CCCCCceEE-EEEE-EEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 478998875 699999998 9997 76677788999999965 589999999999988654 3466644
No 69
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.18 E-value=1.8e-10 Score=76.68 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=58.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---------------CCeeEEEEEeCCccCCcc-eEEE
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---------------GKLLGQRILPLDGLQAGY-RHIS 75 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---------------~~~iG~~~lpl~~l~~G~-r~v~ 75 (109)
+++|+++++ ++||+|||+ |.|. +..+ ...|.|+|||+| +++||++.+++..+..+. .+.+
T Consensus 34 ~~kT~~v~~-t~~P~Wne~-f~f~-~~~~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~ 109 (127)
T cd04027 34 KKRTKTIPQ-NLNPVWNEK-FHFE-CHNS-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYN 109 (127)
T ss_pred eeecceecC-CCCCccceE-EEEE-ecCC-CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccCCCCeEEE
Confidence 468998865 699999997 9997 7544 357999999975 679999999999887555 5678
Q ss_pred eecCCCCCCCCCEEEEE
Q psy16205 76 LRTEANFPMSLPMLFCN 92 (109)
Q Consensus 76 L~d~~g~~~~~~~l~v~ 92 (109)
|....++....+.|.++
T Consensus 110 L~~~~~~~~~~G~i~~~ 126 (127)
T cd04027 110 LEKRTDKSAVSGAIRLH 126 (127)
T ss_pred CccCCCCCcEeEEEEEE
Confidence 87666554445666654
No 70
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.18 E-value=5.5e-11 Score=78.54 Aligned_cols=58 Identities=26% Similarity=0.462 Sum_probs=48.5
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcce
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r 72 (109)
++||+++++ +.||+|||+ |.|. +...++ ..|.|+|||+| +++||++.++++.+..+-.
T Consensus 52 ~~kT~v~~~-t~~P~wne~-f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~ 115 (124)
T cd08387 52 TKQSKIHKK-TLNPEFDES-FVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK 115 (124)
T ss_pred cEeCceEcC-CCCCCcccE-EEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCC
Confidence 478998865 799999998 9998 865543 58999999997 7899999999999986653
No 71
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.18 E-value=8.7e-11 Score=77.29 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=47.3
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecC---CCcEEEEEEEeCC----CCeeEEEEEeCCccC-C-cceEEEe
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLP---DLAVLRFGVYDEN----GKLLGQRILPLDGLQ-A-GYRHISL 76 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~---~l~~l~f~V~d~d----~~~iG~~~lpl~~l~-~-G~r~v~L 76 (109)
++||+++++ +.||+|||+ |.|. +..+ ....|.|+|||++ +++||++.++++... . +-.|.+|
T Consensus 54 ~~kT~v~~~-t~nP~wne~-f~f~-~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L 124 (125)
T cd04031 54 KRRTKTVKK-TLNPEWNQT-FEYS-NVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPL 124 (125)
T ss_pred cccccccCC-CCCCccccE-EEEc-ccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEEC
Confidence 468998864 799999997 9997 5332 2468999999987 789999999998732 2 2345555
No 72
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.16 E-value=9.5e-11 Score=77.39 Aligned_cols=58 Identities=34% Similarity=0.525 Sum_probs=47.5
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC------CCeeEEEEEeCCccCCcc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN------GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d------~~~iG~~~lpl~~l~~G~ 71 (109)
.++||+++++ +.||+|||+ |.|. +...++ ..|.|.|||.+ +++||++.+++..+..+.
T Consensus 53 ~~~kT~v~~~-~~nP~wne~-f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~ 118 (127)
T cd04030 53 TRRKTSVKKD-NLNPVFDET-FEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118 (127)
T ss_pred ceEecccccC-CCCCEECeE-EEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC
Confidence 4579998875 699999998 9998 865433 68999999975 689999999999986554
No 73
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.14 E-value=1.7e-11 Score=82.46 Aligned_cols=70 Identities=24% Similarity=0.411 Sum_probs=54.7
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcceE-EEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYRH-ISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~-v~L~d~~g~~~ 84 (109)
+.||++++ +++||+|||+ |.|. ++..++ ..|.|+|||+| +++||++.+++.+...+.++ .+|.+..|+++
T Consensus 53 ~~kT~v~k-~t~nP~w~e~-F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 53 KKKTHVKK-CTLNPVFNES-FVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred eEcCcccc-CCCCCccCce-EEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCee
Confidence 45788775 5799999998 9998 865543 47889999997 88999999999996666654 55666667664
No 74
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.14 E-value=6.9e-11 Score=80.45 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=47.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCc-EEEEEEEeCC----CCeeEEEEEeCCccC-CcceE
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA-VLRFGVYDEN----GKLLGQRILPLDGLQ-AGYRH 73 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~-~l~f~V~d~d----~~~iG~~~lpl~~l~-~G~r~ 73 (109)
+|.||++++++..||+|||+ |.|+ |+.++.. .+.++|+|.| +++||++.++.++.. .+.+|
T Consensus 51 ~KkKT~v~k~t~~~P~fNEs-F~Fd-v~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~h 117 (135)
T cd08692 51 YKKKTRLVKSSNGQVKWGET-MIFP-VTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQ 117 (135)
T ss_pred eeecCccEECCCCCceecce-EEEe-CCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhh
Confidence 35789988765467999998 9998 9766443 6777899887 899999999998743 34554
No 75
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.14 E-value=1.1e-10 Score=78.19 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=45.3
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
+.||+++++ ++||+|||+ |.|..+...++ ..|+|+|||+| +++||++.+||+.+..+
T Consensus 53 ~~kT~v~~~-t~nP~wnE~-F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 53 KVKTRVLRK-TRNPVYDET-FTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred eeeccEEcC-CCCCceeeE-EEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence 468998865 799999998 99932532232 46999999987 88999999999998543
No 76
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.13 E-value=1.6e-10 Score=80.05 Aligned_cols=53 Identities=34% Similarity=0.527 Sum_probs=46.2
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCCCCeeEEEEEeCCccC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQRILPLDGLQ 68 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d~~~iG~~~lpl~~l~ 68 (109)
+||+++. +++||+|||+ |.|. +..+....|.|+|||+++++||++.++++.+.
T Consensus 91 ~kT~v~~-~tlnP~WnE~-F~f~-v~~~~~~~L~i~V~D~dd~~IG~v~i~l~~l~ 143 (153)
T cd08676 91 KVTEVKP-QTLNPVWNET-FRFE-VEDVSNDQLHLDIWDHDDDFLGCVNIPLKDLP 143 (153)
T ss_pred Eecceec-CCCCCccccE-EEEE-eccCCCCEEEEEEEecCCCeEEEEEEEHHHhC
Confidence 6888776 5799999998 9998 86555678999999998899999999999987
No 77
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.12 E-value=2.4e-11 Score=81.65 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=53.3
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcce-EEEeecCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYR-HISLRTEANFP 83 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r-~v~L~d~~g~~ 83 (109)
++||++++ +++||+|||+ |.|. +...++ ..|.|+|||+| +++||++.+++.+...++. |.++....+++
T Consensus 53 ~~kT~v~~-~t~nP~wne~-f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 53 KKKTTIKK-RTLNPYYNES-FSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRP 128 (136)
T ss_pred eeecccee-CCCCCcccce-EEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCe
Confidence 45788765 5799999997 9998 865554 47999999997 7899999999998776664 45555554444
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.12 E-value=4.3e-11 Score=79.89 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=51.4
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc-eEEEeecCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY-RHISLRTEANFP 83 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~-r~v~L~d~~g~~ 83 (109)
++||++++ +++||+|||+ |.|. +..+++ ..|.|+|||.| +++||++.+++.+..+.. .+.+++..-+++
T Consensus 51 ~~kT~v~~-~t~nP~wne~-f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 51 KHKTQVKK-KTLNPEFNEE-FFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CceeeeEe-ccCCCCcccE-EEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCC
Confidence 46899886 4799999998 9998 866544 47999999987 789999999998743332 234454444443
No 79
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.12 E-value=1.1e-10 Score=78.26 Aligned_cols=55 Identities=29% Similarity=0.470 Sum_probs=46.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecC----CCcEEEEEEEeCC----CCeeEEEEEeCCccCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLP----DLAVLRFGVYDEN----GKLLGQRILPLDGLQA 69 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~----~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~ 69 (109)
++||+++++ ++||+|||+ |.|. +... ....|.|+|||++ +++||++.++|+.+..
T Consensus 56 ~~kT~v~~~-t~nP~wnE~-f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 56 TPKTQVKKK-TLFPLFDES-FEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccCcC-CCCCccCCE-EEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 478998865 699999997 9998 7542 2468999999987 7899999999999873
No 80
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.11 E-value=2.7e-10 Score=78.13 Aligned_cols=58 Identities=31% Similarity=0.580 Sum_probs=49.1
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcce
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r 72 (109)
.++||+++++ +.||+|||+ |.|. +..+ ...|.|+|||+| +++||++.+++..+...-+
T Consensus 33 ~~~kT~vvk~-t~nP~WnE~-f~f~-i~~~-~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 33 QKVKTRVIKK-NLNPVWNEE-LTLS-VPNP-MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEeeeEcC-CCCCeeccc-EEEE-ecCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 4579998865 799999997 9998 8766 567999999998 7999999999988876654
No 81
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.11 E-value=2.4e-10 Score=75.11 Aligned_cols=57 Identities=28% Similarity=0.592 Sum_probs=47.4
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
..||++++ +++||+|||+ |.|. +...++ ..|.|.|||.+ +++||++.++|+.+....
T Consensus 51 ~~~T~v~~-~~~~P~wne~-f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~ 113 (123)
T cd08390 51 SLQSKVKR-KTQNPNFDET-FVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK 113 (123)
T ss_pred ceEeeeEc-CCCCCccceE-EEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCC
Confidence 45888775 5799999997 9998 865543 47999999987 789999999999987665
No 82
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.10 E-value=3.7e-11 Score=80.69 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=53.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC--CcEEEEEEEeCC----CCeeEEEEEeCCccCCcc-eEEEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD--LAVLRFGVYDEN----GKLLGQRILPLDGLQAGY-RHISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~--l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~-r~v~L~d~~g~~~ 84 (109)
++||+++++ +.||+|||+ |.|. ++... ...|.|+|||.+ +++||++.+++.....+. .|..|+...++++
T Consensus 53 ~~kT~v~~~-t~~P~wne~-F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 53 KKKTVIKKR-TLNPVFNES-FIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPV 129 (136)
T ss_pred cccCcceeC-CCCCcccce-EEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCch
Confidence 468988864 799999998 9998 76443 357999999997 789999999999874444 3456666656554
No 83
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.10 E-value=3.1e-10 Score=74.92 Aligned_cols=57 Identities=28% Similarity=0.547 Sum_probs=47.7
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC---CcEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD---LAVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~---l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
+++|+++++++.||+|||+ |.|. +..+. ...|.|.|||.+ +++||++.+++..+..+
T Consensus 34 ~~~T~~~~~~t~nP~Wne~-f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~ 97 (124)
T cd04049 34 ERKSKVAKGDGRNPEWNEK-FKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEE 97 (124)
T ss_pred eeeeeEcCCCCCCCcccce-EEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhC
Confidence 4578877766899999997 9998 87663 468999999987 88999999999998654
No 84
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.09 E-value=1.5e-09 Score=72.95 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=58.3
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC--------CCcEEEEEEEeCC----CCeeEEEEE-eCCccCC---c---c
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP--------DLAVLRFGVYDEN----GKLLGQRIL-PLDGLQA---G---Y 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~--------~l~~l~f~V~d~d----~~~iG~~~l-pl~~l~~---G---~ 71 (109)
.++||+++++ +.||+|||+ |.|..+..+ +...|.|+|||+| +++||++.+ |+..++. + -
T Consensus 33 ~~~kT~v~~~-t~nP~Wne~-~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~ 110 (135)
T cd04017 33 QSQETEVIKE-TLSPTWDQT-LIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKL 110 (135)
T ss_pred eeeEeeeEcC-CCCCccCcE-EEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCc
Confidence 4578998865 799999997 999622221 1257899999987 689999986 6555553 2 2
Q ss_pred eEEEeecCCCCCCCCCEEEEEEEEEE
Q psy16205 72 RHISLRTEANFPMSLPMLFCNIELKI 97 (109)
Q Consensus 72 r~v~L~d~~g~~~~~~~l~v~i~~~~ 97 (109)
+|++|... +. ..+.|++.+++.+
T Consensus 111 ~W~~L~~~-~~--~~Geil~~~~~~~ 133 (135)
T cd04017 111 QWFPIYKG-GQ--SAGELLAAFELIE 133 (135)
T ss_pred eEEEeecC-CC--chhheeEEeEEEE
Confidence 68888643 32 4578888888764
No 85
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.09 E-value=3e-10 Score=74.89 Aligned_cols=57 Identities=30% Similarity=0.441 Sum_probs=46.3
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecC---CCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLP---DLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~---~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
++||+++++ +.||+|||+ |.|. +... ....|.|+|||+| +++||++.++++.+..+.
T Consensus 52 ~~kT~v~~~-t~~P~Wne~-f~f~-~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~ 115 (125)
T cd08386 52 KLETKVKRK-NLNPHWNET-FLFE-GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE 115 (125)
T ss_pred ceeeeeecC-CCCCcccee-EEEc-ccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC
Confidence 468998865 799999998 9996 4221 2357999999987 789999999999988764
No 86
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.07 E-value=2.5e-09 Score=69.42 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=54.0
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC--CCeeEEEEEeCCccCCcc---eEEEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN--GKLLGQRILPLDGLQAGY---RHISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d--~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~ 84 (109)
.+||+++++ .||+|||+ |.|. +...++ ..|.|.++|.+ +..+|...+++..+..|. .|++|....+...
T Consensus 31 ~~kT~~~~~--~~P~Wne~-f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~~~~~~~w~~L~~~~~~~~ 106 (117)
T cd08383 31 VARTKTVEK--LNPFWGEE-FVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSE 106 (117)
T ss_pred eEecceEEC--CCCcccce-EEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCCCCcceeEEECccCCCCCC
Confidence 368998864 89999998 9998 866554 35777888876 333444445555544343 5789987666544
Q ss_pred CCCEEEEEEEE
Q psy16205 85 SLPMLFCNIEL 95 (109)
Q Consensus 85 ~~~~l~v~i~~ 95 (109)
..++|.+.+.+
T Consensus 107 ~~G~l~l~~~~ 117 (117)
T cd08383 107 VQGSVRLRARY 117 (117)
T ss_pred cCceEEEEEEC
Confidence 56788887753
No 87
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.07 E-value=5.2e-10 Score=74.37 Aligned_cols=54 Identities=28% Similarity=0.530 Sum_probs=46.8
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQA 69 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~ 69 (109)
.||+++++ ++||+|||+ |.|. +..++...|.|+|||+| +++||++.+++.....
T Consensus 36 ~kT~~v~~-t~nP~Wne~-f~f~-~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 36 DRDNYIPN-TLNPVFGKM-FELE-ATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred ceeeEEEC-CCCCccceE-EEEE-ecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 47877765 799999997 9997 87777789999999997 7999999999987753
No 88
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.06 E-value=5.3e-10 Score=74.44 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=53.4
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCC-CcEEEEEEEeCC----CCeeEEEEEeCCccCCc--ceEEEeecCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD-LAVLRFGVYDEN----GKLLGQRILPLDGLQAG--YRHISLRTEA 80 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~-l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G--~r~v~L~d~~ 80 (109)
.++||+++++ ++||.|||+ |.|. +..++ ...|.|+|||++ +++||++.++++.+... -.|++|.++.
T Consensus 50 ~~~rT~v~~~-~~~P~wne~-f~~~-~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~ 123 (131)
T cd04026 50 TKQKTKTIKK-TLNPVWNET-FTFD-LKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQE 123 (131)
T ss_pred ceecceeecC-CCCCCccce-EEEe-CCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCcc
Confidence 3578998865 699999998 9997 76543 368999999987 78999999999888643 2578887744
No 89
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.06 E-value=6.6e-10 Score=75.26 Aligned_cols=67 Identities=25% Similarity=0.463 Sum_probs=54.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC---------------CCcEEEEEEEeCC----CCeeEEEEEeCCccCCc-
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP---------------DLAVLRFGVYDEN----GKLLGQRILPLDGLQAG- 70 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~---------------~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G- 70 (109)
.++||+++++ +.||+|||+ |.|. +... ....|.|.|||.+ +++||++.+++..+..+
T Consensus 34 ~~~rT~vv~~-t~nP~Wne~-f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~ 110 (137)
T cd08675 34 DTKRTKVKKK-TNNPRFDEA-FYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAG 110 (137)
T ss_pred CeeccceeeC-CCCCCcceE-EEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCC
Confidence 3579998875 799999998 9998 7654 3468999999987 88999999999998655
Q ss_pred --ceEEEeecCC
Q psy16205 71 --YRHISLRTEA 80 (109)
Q Consensus 71 --~r~v~L~d~~ 80 (109)
..|++|....
T Consensus 111 ~~~~W~~L~~~~ 122 (137)
T cd08675 111 SHQAWYFLQPRE 122 (137)
T ss_pred cccceEecCCcC
Confidence 3678887654
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.05 E-value=8.1e-10 Score=73.64 Aligned_cols=57 Identities=30% Similarity=0.570 Sum_probs=44.3
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeC-------C----CCeeEEEEEeCCc--cC-Ccce
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDE-------N----GKLLGQRILPLDG--LQ-AGYR 72 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~-------d----~~~iG~~~lpl~~--l~-~G~r 72 (109)
.++||+++++ ++||+|||+ |.|+ +. ....|+|.|||. | ++++|.+.+.|.. +. .|++
T Consensus 31 ~~~KTk~i~~-TlnPvWnE~-F~i~-l~--~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~ 101 (118)
T cd08686 31 KKAKTRVCRD-TTEPNWNEE-FEIE-LE--GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQ 101 (118)
T ss_pred eeeeeeeecC-CCCCccceE-EEEE-eC--CCCEEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccCCee
Confidence 4689999965 799999998 9998 75 345899999996 2 7899888887743 43 3664
No 91
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.05 E-value=1.3e-09 Score=72.55 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=45.5
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
++||++++ ++.||+|||+ |.|. +. +...|.|+|||++ +++||++.+++..+..+
T Consensus 35 ~~kT~v~~-~t~~P~Wne~-f~~~-~~--~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 35 PKKTEVSK-KTSNPKWNEH-FTVL-VT--PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred cEEeeeeC-CCCCCccccE-EEEE-eC--CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhh
Confidence 47899876 5799999997 9997 64 4578999999987 78999999999887643
No 92
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.03 E-value=1.7e-09 Score=73.61 Aligned_cols=54 Identities=33% Similarity=0.553 Sum_probs=45.2
Q ss_pred eEeeeeecCCCCCCEE-CccceEEeEEecCCCcEEEEEEEeCC-------CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVY-NEEPFLFRKVVLPDLAVLRFGVYDEN-------GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvW-ne~~f~f~~v~~~~l~~l~f~V~d~d-------~~~iG~~~lpl~~l~~G 70 (109)
++||++++ +++||+| ||+ |.|. +. ....|.|+|||++ +++||++.+|++++..+
T Consensus 46 ~~kT~v~~-~tlnP~W~nE~-f~f~-v~--~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 46 ECRTSIVE-NTINPVWHREQ-FVFV-GL--PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred eeeeeeEc-CCCCCceEceE-EEEE-cC--CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 57899886 4799999 997 9997 64 3357999999975 48999999999998766
No 93
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.03 E-value=1.1e-10 Score=78.68 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=51.0
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCc--ceEEEeecCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAG--YRHISLRTEANFP 83 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G--~r~v~L~d~~g~~ 83 (109)
+.||++++ +++||+|||+ |.|. +...++ ..|.|+|||+| +++||++.+...+.... -.|..|++..+++
T Consensus 52 ~~kT~v~~-~t~nP~wnE~-F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 52 TKKTSCMR-GTIDPFYNES-FSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTA 128 (135)
T ss_pred eEcCcccc-CCCCCcccee-EEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCE
Confidence 35788775 5799999998 9998 865555 36999999997 89999998776555432 1345556655554
Q ss_pred C
Q psy16205 84 M 84 (109)
Q Consensus 84 ~ 84 (109)
+
T Consensus 129 ~ 129 (135)
T cd08410 129 V 129 (135)
T ss_pred e
Confidence 3
No 94
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.03 E-value=3.8e-10 Score=76.64 Aligned_cols=56 Identities=27% Similarity=0.464 Sum_probs=46.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
+.||++++ ++.||+|||+ |.|. ++..++ ..|.|+|||.+ +++||++.+++.+...+
T Consensus 54 ~~kT~v~~-~t~nPvfnEt-F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~ 115 (138)
T cd08408 54 KSKTSIRR-GQPDPEFKET-FVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE 115 (138)
T ss_pred eccceeec-CCCCCcEeee-EEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCch
Confidence 46899776 5699999998 9998 875544 58999999997 88999999999876643
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.03 E-value=3.9e-10 Score=76.27 Aligned_cols=56 Identities=30% Similarity=0.442 Sum_probs=45.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G 70 (109)
+.||++++ ++.||+|||+ |.|. |+..++ ..|.|+|+|.+ +++||++.++......|
T Consensus 52 ~~kT~v~~-~~~nP~fnE~-F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~ 113 (137)
T cd08409 52 TKKTEVVD-GAASPSFNES-FSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARG 113 (137)
T ss_pred eeecccEe-CCCCCcccce-EEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCC
Confidence 46898775 5799999998 9998 865444 68999999987 88999999997655544
No 96
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.03 E-value=1e-10 Score=78.35 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=53.1
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcceE-EEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYRH-ISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~-v~L~d~~g~~~ 84 (109)
++||++++ +++||+|||+ |.|. +...++ ..|.|+|||+| +++||++.+|+....+|+.+ ..+....++++
T Consensus 52 ~~kT~v~~-~t~nP~wne~-f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 52 KKKTSVKK-NTLNPTYNEA-LVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred eecCCccc-CCCCCcccce-EEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCee
Confidence 46788764 5799999997 9997 754433 46899999997 89999999999877777653 45555555543
No 97
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.03 E-value=1.5e-10 Score=76.76 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=55.0
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC--CcEEEEEEEeCC----CCeeEEEEEeCCccCCcc-eEEEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD--LAVLRFGVYDEN----GKLLGQRILPLDGLQAGY-RHISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~--l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~-r~v~L~d~~g~~~ 84 (109)
+++|++++ ++.||+|||+ |.|. +..+. ...|.|+|||.+ +++||++.++++....+. .|.+|.+..++++
T Consensus 52 ~~~T~~~~-~~~~P~wne~-f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 52 KKKTSVKK-GTLNPVFNEA-FSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPI 128 (134)
T ss_pred eecCccee-cCCCCeeeee-EEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCce
Confidence 46898876 5799999998 9998 86554 478999999986 789999999999933333 3567777767654
No 98
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.02 E-value=4.8e-10 Score=78.04 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=45.1
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC-CC--cEEEEEEEeCC----CCeeEEEEEeCCccC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP-DL--AVLRFGVYDEN----GKLLGQRILPLDGLQ 68 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~-~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~ 68 (109)
.++||+++++ +.||+|||+ |.|. +..+ ++ ..|.|+|||+| +++||++.++++.+.
T Consensus 64 ~~~kT~vi~~-t~nP~WnE~-f~f~-~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 64 SKQKTPVVKK-SVNPVWNHT-FVYD-GVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred cceeCCccCC-CCCCCCCCE-EEEe-cCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccc
Confidence 4579998875 699999998 9997 5322 33 47999999987 899999999999875
No 99
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.02 E-value=6.6e-10 Score=73.23 Aligned_cols=58 Identities=29% Similarity=0.520 Sum_probs=46.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC---CCeeEEEEEeCCccCCcc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN---GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~ 71 (109)
++||+++++ ++||+|||+ |.|..+...++ ..+.|+|||++ +++||++.++++.|..+-
T Consensus 53 ~~rT~v~~~-~~~P~Wne~-f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 53 KLRTKTVHK-TRNPEFNET-LTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred ceeeeeecC-CCCCCccce-EEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 579998865 699999997 99951332333 48999999987 789999999999998774
No 100
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.96 E-value=2.2e-09 Score=71.11 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc--eEEEeecCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY--RHISLRTEA 80 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~--r~v~L~d~~ 80 (109)
+++|+++. ++.||+|||+ |.|. +..+ ...|.|+|||++ +++||++.+++..+..+- .+.-|.|..
T Consensus 35 ~~kT~~~~-~t~~P~Wne~-f~~~-v~~~-~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~ 105 (120)
T cd04045 35 KGRTVTIS-NTLNPVWDEV-LYVP-VTSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDE 105 (120)
T ss_pred eeceeEEC-CCcCCccCce-EEEE-ecCC-CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceEEecCCC
Confidence 46888775 5799999997 9997 7544 368999999997 789999999998887663 344444433
No 101
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.95 E-value=1.9e-09 Score=69.67 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=47.5
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEe---cCC-CcEEEEEEEeCC----CCeeEEEEEeCCccCCcc-eEEEe
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVV---LPD-LAVLRFGVYDEN----GKLLGQRILPLDGLQAGY-RHISL 76 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~---~~~-l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~-r~v~L 76 (109)
.++||+++++ ++||+|| + |.|. +. ..+ ...|.|+|||+| +++||++.++++.|..+. +.+.+
T Consensus 38 ~~~kT~vi~~-t~nP~Wn-~-f~~~-~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 38 LVYRTEVIKN-TLNPVWK-P-FTIP-LQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred EEEeeeEecc-CCCCceE-E-EEEE-HHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 3579998875 6999999 5 8875 42 122 468999999998 799999999999998553 34444
No 102
>KOG0696|consensus
Probab=98.92 E-value=3.7e-10 Score=89.44 Aligned_cols=62 Identities=27% Similarity=0.459 Sum_probs=51.1
Q ss_pred cCCCCccceEeeeeecCCCCCCEECccceEEeEEecCC-CcEEEEEEEeCC----CCeeEEEEEeCCccC
Q psy16205 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD-LAVLRFGVYDEN----GKLLGQRILPLDGLQ 68 (109)
Q Consensus 4 ~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~-l~~l~f~V~d~d----~~~iG~~~lpl~~l~ 68 (109)
+|....+.|+||++|+. ++||+|||+ |.|. +...+ -..|.+.|||.| +|++|+.++.++.|.
T Consensus 210 iPD~~~~sKqKTkTik~-~LNP~wNEt-ftf~-Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 210 IPDPKNESKQKTKTIKA-TLNPVWNET-FTFK-LKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred ccCCcchhhhhhhhhhh-hcCccccce-eEEe-cccccccceeEEEEecccccccccccceecccHHHHh
Confidence 56666677889999986 699999998 9998 74333 357889999998 999999999887764
No 103
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.91 E-value=4.4e-09 Score=64.70 Aligned_cols=61 Identities=41% Similarity=0.687 Sum_probs=51.4
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcceEEE
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYRHIS 75 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~ 75 (109)
..+|+++.+ +.||.|||+ |.|. +..+....|.|+|||.+ +.++|++.+++..+..|+++.+
T Consensus 36 ~~~T~~~~~-~~~P~w~e~-~~~~-~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~~~ 100 (101)
T smart00239 36 KKKTKVVKN-TLNPVWNET-FEFE-VPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100 (101)
T ss_pred eEeeeEecC-CCCCcccce-EEEE-ecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCccccC
Confidence 468988875 479999997 9998 76655788999999987 7899999999999998887643
No 104
>KOG1028|consensus
Probab=98.90 E-value=6.9e-09 Score=81.98 Aligned_cols=82 Identities=32% Similarity=0.478 Sum_probs=61.3
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEAN 81 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g 81 (109)
.|.||++.+ +++||+|||+ |.|. |...++ ..|.|+|||.| +++||++.+||..+.... .|.+|....-
T Consensus 202 ~k~kT~v~r-~tlnP~fnEt-f~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~ 278 (421)
T KOG1028|consen 202 GKFKTRVHR-KTLNPVFNET-FRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST 278 (421)
T ss_pred Ccceeeeee-cCcCCccccc-eEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccC
Confidence 467999775 5799999998 9998 876655 58999999999 899999999998887776 3666665322
Q ss_pred CCCCC-CEEEEEEEE
Q psy16205 82 FPMSL-PMLFCNIEL 95 (109)
Q Consensus 82 ~~~~~-~~l~v~i~~ 95 (109)
..... +.|++-+.+
T Consensus 279 ~~~~~~gel~~sL~Y 293 (421)
T KOG1028|consen 279 DSEELAGELLLSLCY 293 (421)
T ss_pred CcccccceEEEEEEe
Confidence 22222 366665543
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.86 E-value=5e-09 Score=94.33 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=62.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC-cEEEEEEEeCC---CCeeEEEEEeCCccCCcce---EEEeecCCCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL-AVLRFGVYDEN---GKLLGQRILPLDGLQAGYR---HISLRTEANFPM 84 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l-~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~r---~v~L~d~~g~~~ 84 (109)
+.||+++++ +.||+|||+ |+|. +..|.. ..|+|.|||+| ++.+|.+.+++.++..+-+ +++|.++..+.=
T Consensus 2012 ~~kTkvvk~-~~nP~Wne~-f~~~-~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G 2088 (2102)
T PLN03200 2012 PRQTKVVSH-SSSPEWKEG-FTWA-FDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088 (2102)
T ss_pred cccccccCC-CCCCCcccc-eeee-ecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcccccCC
Confidence 358999976 599999997 9997 877765 45999999998 7799999999999876653 688886333221
Q ss_pred CCCEEEEEEEEE
Q psy16205 85 SLPMLFCNIELK 96 (109)
Q Consensus 85 ~~~~l~v~i~~~ 96 (109)
..-+|.++++++
T Consensus 2089 ~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2089 SSRTLEIEFQWS 2100 (2102)
T ss_pred CcceEEEEEEec
Confidence 125677877664
No 106
>PLN02352 phospholipase D epsilon
Probab=98.85 E-value=1.3e-08 Score=84.91 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=64.2
Q ss_pred CCCCCEECccceEEeEEecCCCcEEEEEEEeCCCCeeEEEEEeCCccCCcc----eEEEeecCCCCCCCCCEEEEEEEEE
Q psy16205 21 NGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQRILPLDGLQAGY----RHISLRTEANFPMSLPMLFCNIELK 96 (109)
Q Consensus 21 ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d~~~iG~~~lpl~~l~~G~----r~v~L~d~~g~~~~~~~l~v~i~~~ 96 (109)
|.-||+|||+ |... +..+..+.|.|+|+| ..++||.+.+|+..+..|. +++|+.+.+|+|+..++|.+.++++
T Consensus 54 ~~~~p~w~e~-f~i~-~ah~~~~~~~f~vk~-~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 130 (758)
T PLN02352 54 HEYDRVWNQT-FQIL-CAHPLDSTITITLKT-KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFR 130 (758)
T ss_pred CCCCCccccc-eeEE-eeeecCCcEEEEEec-CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEE
Confidence 4459999997 8844 333322579999999 4889999999999999883 6999999999999999999999998
Q ss_pred EccCC
Q psy16205 97 IYVPD 101 (109)
Q Consensus 97 ~~~~~ 101 (109)
+..-|
T Consensus 131 ~~~~~ 135 (758)
T PLN02352 131 PAELE 135 (758)
T ss_pred EhhhC
Confidence 76443
No 107
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.79 E-value=8e-09 Score=62.48 Aligned_cols=47 Identities=40% Similarity=0.718 Sum_probs=40.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEE
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRI 61 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~ 61 (109)
.++|+++. ++.||.|||+ |.|. +..++.+.|.|+|||.+ +++||+++
T Consensus 35 ~~~T~~~~-~~~~P~w~e~-~~~~-~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 35 KYKTKVKK-NTSNPVWNEE-FEFP-LDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEECCBS-SBSSEEEEEE-EEEE-ESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeeee-ccccceeeee-eeee-eecccccceEEEEEECCCCCCCCEEEEEC
Confidence 47898776 5699999998 9998 88888888999999987 78999874
No 108
>KOG1011|consensus
Probab=98.70 E-value=1.6e-08 Score=83.39 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=58.9
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---------------CCeeEEEEEeCCccCCcce-EE
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---------------GKLLGQRILPLDGLQAGYR-HI 74 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---------------~~~iG~~~lpl~~l~~G~r-~v 74 (109)
.|.||++|..+ +||+|||. |+|+ .. .....|++.|||+| +||+|+..+.++.|..... |.
T Consensus 327 tkrrtrti~~~-lnpvw~ek-fhfe-ch-nstdrikvrvwded~dlksklrqkl~resddflgqtvievrtlsgemdvwy 402 (1283)
T KOG1011|consen 327 TKRRTRTIHQE-LNPVWNEK-FHFE-CH-NSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWY 402 (1283)
T ss_pred cchhhHhhhhc-cchhhhhh-eeee-ec-CCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecccchhhhc
Confidence 45689999875 99999997 9997 53 34467999999986 8899999999999985543 45
Q ss_pred EeecCCCCCCCCCEEEEEEEE
Q psy16205 75 SLRTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 75 ~L~d~~g~~~~~~~l~v~i~~ 95 (109)
.|.-...+..-.+.|.++|+.
T Consensus 403 nlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 403 NLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred chhhccchhhccceEEEEEEE
Confidence 555555554444445444443
No 109
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.68 E-value=5.3e-08 Score=66.13 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=49.0
Q ss_pred ceEeeeeecCCCCC--CEECccceEEeEEecC---------------------C--CcEEEEEEEeCC----CCeeEEEE
Q psy16205 11 KEFRTRLCPSNGLN--PVYNEEPFLFRKVVLP---------------------D--LAVLRFGVYDEN----GKLLGQRI 61 (109)
Q Consensus 11 ~k~kT~~i~~ng~n--PvWne~~f~f~~v~~~---------------------~--l~~l~f~V~d~d----~~~iG~~~ 61 (109)
.+++|.+.++ ++| |+||++ |.|. +..+ + -..|.++|||.| +++||+..
T Consensus 39 ~kqkTDVHyr-slnG~~~FNwR-fvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~ 115 (133)
T cd08374 39 DKQKTDVHYR-SLDGEGNFNWR-FVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLE 115 (133)
T ss_pred cccccceEEe-cCCCCcEEeEE-EEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEE
Confidence 4579998775 799 999998 9997 7552 1 258999999998 89999999
Q ss_pred EeCCccCCcce
Q psy16205 62 LPLDGLQAGYR 72 (109)
Q Consensus 62 lpl~~l~~G~r 72 (109)
+++..+.++..
T Consensus 116 l~l~~l~~~~~ 126 (133)
T cd08374 116 LDLSILPRPAK 126 (133)
T ss_pred EEhhhcccccc
Confidence 99999988764
No 110
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.62 E-value=1.3e-07 Score=57.54 Aligned_cols=55 Identities=36% Similarity=0.689 Sum_probs=45.8
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQ 68 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~ 68 (109)
..++|+++.+ +.||.|||. |.|. +.......+.|.|++.+ +.+||++.+++..+.
T Consensus 32 ~~~~T~~~~~-~~~P~w~~~-~~~~-~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 32 QKFKTKVVKN-TLNPVWNET-FEFP-VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred ceEecceeCC-CCCCcccce-EEEE-ccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 3468888765 689999997 9997 76545678999999987 689999999999887
No 111
>KOG1028|consensus
Probab=98.35 E-value=6.2e-07 Score=70.98 Aligned_cols=65 Identities=32% Similarity=0.479 Sum_probs=47.4
Q ss_pred CCCCccceEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCccCCcce
Q psy16205 5 PTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 5 ~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r 72 (109)
+.+...+|.||.+. ++++||+|||+ |.|. |+...+ ..|.++|||+| +++||+..+...+-..|.+
T Consensus 329 ~~~~~~~kkkT~~~-~~~~npv~nes-f~F~-vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~ 399 (421)
T KOG1028|consen 329 DGDKRLSKKKTSVK-KKTLNPVFNET-FVFD-VPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDSTGEEVR 399 (421)
T ss_pred cCCceeeeeeeecc-cCCCCCccccc-EEEe-CCHHHhheeEEEEEEEEcccccccceeeEEEecCCCCchHHH
Confidence 34433345677655 56799999998 9997 876655 46899999998 7799998888776333333
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.35 E-value=6.2e-07 Score=77.31 Aligned_cols=66 Identities=33% Similarity=0.494 Sum_probs=56.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcce---EEEeecCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGYR---HISLRTEA 80 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r---~v~L~d~~ 80 (109)
-+||+++++ ++||+|||+ |..+ |.+.....+.+.|+|+| ++.||++.++|..|.+|.. .+||-.+.
T Consensus 1074 vyktkv~Kk-tlNPvwNEe-~~i~-v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038 1074 VYKTKVVKK-TLNPVWNEE-FTIE-VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred cccccchhc-cCCCCcccc-ceEe-eeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc
Confidence 378998876 699999997 9988 88888889999999998 8999999999999999874 47766555
No 113
>KOG1328|consensus
Probab=98.19 E-value=3.6e-07 Score=76.06 Aligned_cols=53 Identities=32% Similarity=0.577 Sum_probs=45.0
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecC----CCcEEEEEEEeCC----CCeeEEEEEeCCccC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLP----DLAVLRFGVYDEN----GKLLGQRILPLDGLQ 68 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~----~l~~l~f~V~d~d----~~~iG~~~lpl~~l~ 68 (109)
+||+++++ ++||+|+|+ |.|. |+.. +.|+|.|+|+|+| +||-|++.+.|+.+.
T Consensus 988 q~T~V~~r-tLnPVfDE~-FeFs-Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 988 QKTKVVSR-TLNPVFDET-FEFS-VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred hhhhhhhc-cccchhhhh-eeee-cCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 68998875 799999999 9998 7422 4589999999999 999999999888763
No 114
>KOG1328|consensus
Probab=98.07 E-value=5e-06 Score=69.49 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=61.1
Q ss_pred eeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----------------------------------------C
Q psy16205 15 TRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----------------------------------------G 54 (109)
Q Consensus 15 T~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----------------------------------------~ 54 (109)
...|+..++||+|+|+ |.|+ |.+-.-..+.+-+||+| |
T Consensus 180 atsvk~~TLnPkW~Ek-F~F~-IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 180 ATSVKKKTLNPKWSEK-FQFT-IEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred hcccccccCCcchhhh-eeee-hhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence 3346678999999997 9998 97777778999999985 6
Q ss_pred CeeEEEEEeCCccCC-cc-eEEEeecCCCCCCCCCEEEEEEEEE
Q psy16205 55 KLLGQRILPLDGLQA-GY-RHISLRTEANFPMSLPMLFCNIELK 96 (109)
Q Consensus 55 ~~iG~~~lpl~~l~~-G~-r~v~L~d~~g~~~~~~~l~v~i~~~ 96 (109)
||+|...+|++.+.+ |. +|..|.-.+.+.--.+-+..++...
T Consensus 258 DFLGciNipl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLS 301 (1103)
T ss_pred ccccccccchhcCCcchHHHHhccCcccccccccceEEEEEEEe
Confidence 899999999999875 44 7888877666654445555555543
No 115
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.58 E-value=0.00022 Score=62.05 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=54.9
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc--eE--EE-eecCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY--RH--IS-LRTEANF 82 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~--r~--v~-L~d~~g~ 82 (109)
..||++++ |.+||+|||+ |... + ..--.-|.++|||.+ ++++|...++|..|.+-- ++ +. +++.
T Consensus 472 ~gkT~v~~-nt~nPvwNEt-~Yi~-l-ns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~--- 544 (1227)
T COG5038 472 IGKTRVKK-NTLNPVWNET-FYIL-L-NSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNT--- 544 (1227)
T ss_pred CCccceee-ccCCccccce-EEEE-e-cccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeeccC---
Confidence 35888775 6899999998 7753 4 233356899999965 899999999998876432 22 22 2221
Q ss_pred CCCCCEEEEEEEEEEccCC
Q psy16205 83 PMSLPMLFCNIELKIYVPD 101 (109)
Q Consensus 83 ~~~~~~l~v~i~~~~~~~~ 101 (109)
-..+.|+-.+.+...+++
T Consensus 545 -k~vGrL~yDl~ffp~~e~ 562 (1227)
T COG5038 545 -KNVGRLTYDLRFFPVIED 562 (1227)
T ss_pred -ccceEEEEeeeeecccCC
Confidence 134666666666655544
No 116
>KOG1031|consensus
Probab=97.45 E-value=0.00018 Score=59.53 Aligned_cols=54 Identities=30% Similarity=0.493 Sum_probs=44.9
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC----CCeeEEEEEeCCcc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN----GKLLGQRILPLDGL 67 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d----~~~iG~~~lpl~~l 67 (109)
.+||.+-. .++||.||..+|.|+ |.+.++ .-|.+.+.|+| +|-||.+.+.+.-|
T Consensus 37 t~ktdvf~-kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl 96 (1169)
T KOG1031|consen 37 TFKTDVFL-KSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPL 96 (1169)
T ss_pred ceehhhhh-hhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChH
Confidence 36787654 579999998789998 977766 46899999998 89999999998765
No 117
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.39 E-value=8.4e-05 Score=48.81 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=40.7
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCcce
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G~r 72 (109)
+.||++ +.||.|||+ |.|+ |. ....+.+.|||.. .-+||..=++++.+.+..|
T Consensus 36 kaRTr~----srnd~WnE~-F~i~-Vd--k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~Ee~R 91 (109)
T cd08689 36 RARTKP----SRNDRWNED-FEIP-VE--KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAEEIR 91 (109)
T ss_pred EEeccC----CCCCcccce-EEEE-ec--CCcEEEEEEEeCCCCeecceeeehhhHHHHHHHHH
Confidence 456764 478999998 9998 83 4578999999987 4588888888877765554
No 118
>KOG1011|consensus
Probab=97.08 E-value=0.00078 Score=56.41 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=54.8
Q ss_pred cccCCCCccceEeeeeecCCCCCCEECccceEEeEEe---cCCCcEEEEEEEeCC----CCeeEEEEEeCCccC-Ccc--
Q psy16205 2 YGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVV---LPDLAVLRFGVYDEN----GKLLGQRILPLDGLQ-AGY-- 71 (109)
Q Consensus 2 ~g~~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~---~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~-~G~-- 71 (109)
.|....-.+.|+.|++.. |+..|.+||+ |.|- +- .|+.-.|.|+|+|+= |..+|-+.++|+++. .|.
T Consensus 1154 vGP~lsDKKRK~~TKtKs-nnWaPKyNEt-F~f~-Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a 1230 (1283)
T KOG1011|consen 1154 VGPHLSDKKRKFSTKTKS-NNWAPKYNET-FHFF-LGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCA 1230 (1283)
T ss_pred ecCcccchhhhccccccC-CCcCcccCce-eEEE-eccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCcee
Confidence 344444444568888765 5699999998 9996 63 456678999999974 889999999999875 343
Q ss_pred eEEEee
Q psy16205 72 RHISLR 77 (109)
Q Consensus 72 r~v~L~ 77 (109)
.|+||-
T Consensus 1231 ~W~pLg 1236 (1283)
T KOG1011|consen 1231 CWVPLG 1236 (1283)
T ss_pred Eeeecc
Confidence 578873
No 119
>PLN02964 phosphatidylserine decarboxylase
Probab=97.08 E-value=0.00044 Score=57.57 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=51.4
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc-----eEEEeecCCC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY-----RHISLRTEAN 81 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~-----r~v~L~d~~g 81 (109)
+-+||.+.+ ++.||+||+. ..|. +...+..+.+|.|||.+ ++++|-+.+.+..+..-. +...+.|+++
T Consensus 80 ~~f~t~~~~-~~~~p~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 80 QTFRTETSD-STDKPVWNSE-KKLL-LEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred eeeeecccc-ccCCcccchh-hceE-eccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 458998765 6899999997 8886 76667778899999998 889998888776654332 2345666654
No 120
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.94 E-value=0.00025 Score=45.47 Aligned_cols=57 Identities=21% Similarity=0.382 Sum_probs=44.8
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCC--cEEEEEEEeCC--CCeeEEEEEeCCccCCcc
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN--GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l--~~l~f~V~d~d--~~~iG~~~lpl~~l~~G~ 71 (109)
.+||. +++...||+|+|+ |.|+ |..-++ ..|.|+|+..- .+.||++++.++++.+..
T Consensus 36 ~~KsS-~rrgs~d~~f~ET-FVFq-i~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~geeE 96 (103)
T cd08684 36 HFKSS-AKEGSNDIEFMET-FVFA-IKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLSTQE 96 (103)
T ss_pred cccch-hhcCCCChhHHHH-HHHH-HHHhhccceEEEEEeeccCCccceeeEEEeecccCCHHH
Confidence 35675 4556789999999 9998 866655 46778999865 889999999999987543
No 121
>KOG2059|consensus
Probab=96.90 E-value=0.0017 Score=54.30 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=62.5
Q ss_pred CCCCccceEeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccC--Ccc-eEEEe--
Q psy16205 5 PTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQ--AGY-RHISL-- 76 (109)
Q Consensus 5 ~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~--~G~-r~v~L-- 76 (109)
..|.... .||.+|-+ ++-|.|.|+ |.|. |+ +....|-|=|||.| |+.||.+++.=..|. +|. .|+.|
T Consensus 33 ~lD~E~v-~RT~tv~k-sL~PF~gEe-~~~~-iP-~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~ 107 (800)
T KOG2059|consen 33 NLDQEEV-CRTATVEK-SLCPFFGEE-FYFE-IP-RTFRYLSFYVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQP 107 (800)
T ss_pred eecchhh-hhhhhhhh-hcCCccccc-eEEe-cC-cceeeEEEEEeccccccccccceeeeeHHHHhhCCCCccceeccc
Confidence 4455444 78999975 799999997 9998 75 35567889999999 999999998855543 354 34555
Q ss_pred ecCCCCCCCCCEEEEEEEEEEc
Q psy16205 77 RTEANFPMSLPMLFCNIELKIY 98 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~~~~ 98 (109)
.|++.+. .+.+.+.+++.+.
T Consensus 108 VD~dsEV--QG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 108 VDPDSEV--QGKVHLELALTEA 127 (800)
T ss_pred cCCChhh--ceeEEEEEEeccc
Confidence 4565542 4677777776644
No 122
>KOG2059|consensus
Probab=96.89 E-value=0.0032 Score=52.76 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=55.5
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecC---------------CCcEEEEEEEeCC-----CCeeEEEEEeCCccCC--c
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLP---------------DLAVLRFGVYDEN-----GKLLGQRILPLDGLQA--G 70 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~---------------~l~~l~f~V~d~d-----~~~iG~~~lpl~~l~~--G 70 (109)
.+|++.+. +-||.|||. |.|. +..+ +...|++.+|+.. ++|+|+..+|+..+++ +
T Consensus 168 ~~T~~~kk-t~~p~~~Ev-~~f~-~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~ 244 (800)
T KOG2059|consen 168 KKTKVKKK-TTNPQFDEV-FYFE-VTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSS 244 (800)
T ss_pred cccceeee-ccCcchhhh-eeee-eccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccC
Confidence 36887764 799999996 9998 8655 4567899999953 8899999999988772 2
Q ss_pred c-eEEEee-cCCCCCC----CCCEEEEEEEEE
Q psy16205 71 Y-RHISLR-TEANFPM----SLPMLFCNIELK 96 (109)
Q Consensus 71 ~-r~v~L~-d~~g~~~----~~~~l~v~i~~~ 96 (109)
. -|..|. +++|+.. ..+++.+++.++
T Consensus 245 p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 245 PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred ccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 2 233333 1333211 256667776654
No 123
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.88 E-value=0.0035 Score=42.42 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=44.3
Q ss_pred eeeeecCCCCCCEECccceEEeEEecC---CCcEEEEEEEeCC----C----CeeEEEEEeCC----ccCCcceEEEeec
Q psy16205 14 RTRLCPSNGLNPVYNEEPFLFRKVVLP---DLAVLRFGVYDEN----G----KLLGQRILPLD----GLQAGYRHISLRT 78 (109)
Q Consensus 14 kT~~i~~ng~nPvWne~~f~f~~v~~~---~l~~l~f~V~d~d----~----~~iG~~~lpl~----~l~~G~r~v~L~d 78 (109)
.|+.+.-+..+|.|||. +.|. |... -.|.|.|+|++.+ . .+||++.+||- .|++|...++|-.
T Consensus 23 ~T~~~~~~~~~~~W~e~-l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~~G~~~L~lW~ 100 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEW-LTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLRQGPQKLSLWP 100 (142)
T ss_dssp E-S-EESS-SSEEEEEE-EEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBEEEEEEEE-EE
T ss_pred eccccccccccceEeeE-EEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCcccCCCEEEEEEc
Confidence 45544432268999996 9998 8544 4489999999975 2 59999999984 4778877777654
No 124
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.77 E-value=0.0042 Score=43.23 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCCEECccceEEeEEecCCC---cEEEEEEEeCC----CCeeEEEEEeCC----ccCCcceEEEee
Q psy16205 23 LNPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN----GKLLGQRILPLD----GLQAGYRHISLR 77 (109)
Q Consensus 23 ~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d----~~~iG~~~lpl~----~l~~G~r~v~L~ 77 (109)
-.+.|||- ..|+ |...++ |.|.|+||+.+ ..++|.+.+||- .|++|...+.+-
T Consensus 58 ~~~~WnEw-l~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw 121 (159)
T cd08397 58 NRRNWNEW-LTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKDGTLRRGRQKLRVW 121 (159)
T ss_pred CCccccee-EEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCCCcEecCCEEEEEE
Confidence 46889995 9998 865555 89999999986 359999999983 478888766664
No 125
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.70 E-value=0.014 Score=39.97 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=42.7
Q ss_pred CCCEECccceEEeEEecCCC---cEEEEEEEeCC------CCeeEEEEEeCC----ccCCcceEEEeec
Q psy16205 23 LNPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN------GKLLGQRILPLD----GLQAGYRHISLRT 78 (109)
Q Consensus 23 ~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d------~~~iG~~~lpl~----~l~~G~r~v~L~d 78 (109)
-++.|||. ..|+ +...++ |.|.|+||+.+ ..+||++.+||= .|++|...+.|-.
T Consensus 56 ~~~~Wne~-l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~ 122 (156)
T cd08380 56 TSVTWNEW-LTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWP 122 (156)
T ss_pred CCCcccce-eEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccC
Confidence 57999996 9997 754444 89999999975 269999999983 4889988777653
No 126
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.35 E-value=0.0099 Score=41.39 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=40.8
Q ss_pred CCCEECccceEEeEEecCCC---cEEEEEEEeCC--------CCeeEEEEEeCC----ccCCcceEEEee
Q psy16205 23 LNPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN--------GKLLGQRILPLD----GLQAGYRHISLR 77 (109)
Q Consensus 23 ~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d--------~~~iG~~~lpl~----~l~~G~r~v~L~ 77 (109)
-++.|||- ++|+ |...++ |.|.|++|+.. ..++|.+.++|- .|++|...+.|-
T Consensus 53 ~~~~WnEw-L~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW 120 (158)
T cd08398 53 SNPRWNEW-LDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLW 120 (158)
T ss_pred CCCcccee-EEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEE
Confidence 47999996 9998 865554 89999999864 147999999984 488888655544
No 127
>KOG1013|consensus
Probab=96.34 E-value=0.00081 Score=51.91 Aligned_cols=66 Identities=30% Similarity=0.298 Sum_probs=46.6
Q ss_pred cCCCCccceEeeeeecCCCCCCEECcc-ceEEeEEecC-CCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc
Q psy16205 4 LPTDTIRKEFRTRLCPSNGLNPVYNEE-PFLFRKVVLP-DLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY 71 (109)
Q Consensus 4 ~~~d~~~~k~kT~~i~~ng~nPvWne~-~f~f~~v~~~-~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~ 71 (109)
+|.-+.-.+++|++. +|++||.|||+ ++.+. ...+ ..-.+++.|.|++ ++++|+..+++..|.+-.
T Consensus 123 lpga~kl~slr~~t~-~n~lN~~w~etev~~~i-~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 123 LPGAGKLNSLRTKTT-RNTLNPEWNETEVYEGI-TDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred ccchhhhhhhhHHhh-ccCcCcceeccceeccc-ccchhhhhhhheeeccCcccccccCcccchhhhhccChhh
Confidence 344444445677765 57899999997 24442 3323 3357888999988 789999999998887665
No 128
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.31 E-value=0.037 Score=38.93 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=38.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEeCC-------CCeeEEEEEeCCc----cCCcceEEEee
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYDEN-------GKLLGQRILPLDG----LQAGYRHISLR 77 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d~d-------~~~iG~~~lpl~~----l~~G~r~v~L~ 77 (109)
..+.|.+.+++ -+|.|+|+ |..+ ++.+ +...|.|+++.-. +..+|-+.+||.. +..|...+++.
T Consensus 59 ~~~~S~v~yh~-k~P~f~de-iKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g~~i~dg~~~L~v~ 135 (184)
T PF14429_consen 59 TSYYSSVYYHN-KNPQFNDE-IKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNGTIIQDGEHELPVY 135 (184)
T ss_dssp S-EE----TT--SS-EEEEE-EEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS-B--SEEEEEEEE
T ss_pred eEEEEEEEecC-CCCCccEE-EEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCCeEecCCCEEEEEE
Confidence 45677777664 79999998 9987 7655 3478999999864 2689999999865 34455667775
No 129
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.13 E-value=0.043 Score=38.59 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=43.4
Q ss_pred eeeeecCCCCCCEECccceEEeEEecCCC---cEEEEEEEeCC--------------------CCeeEEEEEeCC----c
Q psy16205 14 RTRLCPSNGLNPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN--------------------GKLLGQRILPLD----G 66 (109)
Q Consensus 14 kT~~i~~ng~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d--------------------~~~iG~~~lpl~----~ 66 (109)
.|+.+.- .-++.|||. +.|+ |...++ |.|.|+||+.. ..+||++.++|- .
T Consensus 47 ~T~~~~~-~~~~~Wnew-l~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~ 123 (173)
T cd08693 47 KTSEVSG-KNDPVWNET-LEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQ 123 (173)
T ss_pred EccccCC-CCcccccee-EEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccch
Confidence 4544332 246999996 9998 765544 89999999864 158999999984 4
Q ss_pred cCCcceEEEee
Q psy16205 67 LQAGYRHISLR 77 (109)
Q Consensus 67 l~~G~r~v~L~ 77 (109)
|++|...+.|-
T Consensus 124 Lr~G~~~L~lW 134 (173)
T cd08693 124 LKTGDHTLYMW 134 (173)
T ss_pred hhcCCeEEEec
Confidence 88887655553
No 130
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.07 E-value=0.03 Score=40.43 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=48.2
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEe--------CCCCeeEEEEEeCC-----ccCCcceEEE
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYD--------ENGKLLGQRILPLD-----GLQAGYRHIS 75 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d--------~d~~~iG~~~lpl~-----~l~~G~r~v~ 75 (109)
..++|-+.+.+ -+|.|+|+ +... |+.. ..+.|+|+++- ....++|-+.+||- .|+.|...++
T Consensus 53 se~~S~V~Yh~-~~P~W~Et-IKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~ 129 (196)
T cd08694 53 DEYKSVIYYQV-DKPKWFET-FKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLI 129 (196)
T ss_pred eeEEEEEEeec-CCCCCcee-EEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEE
Confidence 45788776664 68999998 8876 6544 34789999844 22578999999984 3888888887
Q ss_pred eec
Q psy16205 76 LRT 78 (109)
Q Consensus 76 L~d 78 (109)
++-
T Consensus 130 vYK 132 (196)
T cd08694 130 VYK 132 (196)
T ss_pred EEE
Confidence 764
No 131
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.94 E-value=0.054 Score=38.88 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=41.9
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEeC-----C-CCeeEEEEEeCCc-----cCCcceEEEe
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYDE-----N-GKLLGQRILPLDG-----LQAGYRHISL 76 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d~-----d-~~~iG~~~lpl~~-----l~~G~r~v~L 76 (109)
..++|-+.+.+ -+|.|||+ +... |+.. +.+.|+|+++-- . ..++|-+.+||-. |+.|...+-+
T Consensus 53 se~~S~V~yH~-~~P~W~Et-iKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~v 128 (189)
T cd08695 53 SEYRSFVLYHN-NSPRWNET-IKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYV 128 (189)
T ss_pred ceEEEEEEEcC-CCCCCcee-EEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEE
Confidence 35889888865 68999998 8876 6544 347899955542 2 3577777777722 5556554433
No 132
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.70 E-value=0.091 Score=36.87 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=45.7
Q ss_pred eeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEeCC---------CCeeEEEEEeCCc-----cCCcceEEEeec
Q psy16205 15 TRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYDEN---------GKLLGQRILPLDG-----LQAGYRHISLRT 78 (109)
Q Consensus 15 T~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d~d---------~~~iG~~~lpl~~-----l~~G~r~v~L~d 78 (109)
+.++..+ -+|.|+|+ |... ++.. +...|.|++++-+ ..++|-+.+||-. ++.|...+|+.-
T Consensus 56 ~sv~~~~-k~p~f~de-iKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k 132 (178)
T cd08679 56 TSVVYYH-KNPVFNDE-IKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYK 132 (178)
T ss_pred EEEEEcC-CCCCCcee-EEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEe
Confidence 4455555 79999998 9876 7544 3478999998854 4578888888876 677777777764
Q ss_pred CC
Q psy16205 79 EA 80 (109)
Q Consensus 79 ~~ 80 (109)
..
T Consensus 133 ~~ 134 (178)
T cd08679 133 YD 134 (178)
T ss_pred cC
Confidence 33
No 133
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.49 E-value=0.067 Score=37.38 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCEECccceEEeEEecCCC---cEEEEEEEeCC--C-----------CeeEEEEEeC----CccCCcceEEEeec
Q psy16205 24 NPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN--G-----------KLLGQRILPL----DGLQAGYRHISLRT 78 (109)
Q Consensus 24 nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d--~-----------~~iG~~~lpl----~~l~~G~r~v~L~d 78 (109)
.+.|||- +.|+ +...++ |.|.|++|+.. . .+||++.++| ..|++|...+.|--
T Consensus 62 ~~~Wnew-l~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~ 134 (171)
T cd04012 62 RVVWDEW-IEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWP 134 (171)
T ss_pred cccccce-EECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEecc
Confidence 5789996 9997 754443 89999999864 2 5999999998 44889988777753
No 134
>KOG0905|consensus
Probab=95.48 E-value=0.0072 Score=53.39 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=46.2
Q ss_pred CCCCccceEeeeeecCCCCCCEECccceEEeEEecCC--CcEEEEEEEeCC----CCeeEEEEEeCCccC
Q psy16205 5 PTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD--LAVLRFGVYDEN----GKLLGQRILPLDGLQ 68 (109)
Q Consensus 5 ~~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~--l~~l~f~V~d~d----~~~iG~~~lpl~~l~ 68 (109)
|.-....|.||+++++ +.||.|||. +.+..++... ...|.++||..+ +.++|.+++||..+.
T Consensus 1555 Pdp~k~sKRKTKvvrk-t~~PTfnE~-LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRK-TRNPTFNEM-LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred CCchHhhhhhhccccc-cCCCchhhh-eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence 3333334679998865 899999998 7665333222 258999999987 889999999998864
No 135
>KOG3837|consensus
Probab=95.47 E-value=0.077 Score=42.53 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=68.6
Q ss_pred CCCccceEeeeeecCCCCCCEECccceEEeEEec-CCC----------cEEEEEEEeCC-----CCeeEEEEEeCCccCC
Q psy16205 6 TDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVL-PDL----------AVLRFGVYDEN-----GKLLGQRILPLDGLQA 69 (109)
Q Consensus 6 ~d~~~~k~kT~~i~~ng~nPvWne~~f~f~~v~~-~~l----------~~l~f~V~d~d-----~~~iG~~~lpl~~l~~ 69 (109)
.|.. .+.||.+|++ +-+|.|+|. |... |.. +.+ --++|.++.+. |.++|.+.+.+.-|..
T Consensus 400 nD~~-qk~kt~vik~-t~SPdfde~-fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len 475 (523)
T KOG3837|consen 400 NDSR-QKLKTDVIKV-TPSPDFDED-FKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILEN 475 (523)
T ss_pred cccc-ccCccceeeC-CCCCCcccc-eeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhc
Confidence 3444 4578998874 789999997 9986 643 222 25889999875 8899999999888876
Q ss_pred cc---eEEEeecCCCCCCCCCEEEEEEEEEEccCCC
Q psy16205 70 GY---RHISLRTEANFPMSLPMLFCNIELKIYVPDG 102 (109)
Q Consensus 70 G~---r~v~L~d~~g~~~~~~~l~v~i~~~~~~~~~ 102 (109)
-. .+++|+| |+.--++.|-|+|.+...+-|+
T Consensus 476 ~cei~e~~~l~D--GRK~vGGkLevKvRiR~Pi~~~ 509 (523)
T KOG3837|consen 476 MCEICEYLPLKD--GRKAVGGKLEVKVRIRQPIGDA 509 (523)
T ss_pred ccchhhceeccc--cccccCCeeEEEEEEecccchh
Confidence 65 4789998 5555689999999988665543
No 136
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.28 E-value=0.072 Score=37.84 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=39.3
Q ss_pred CCCCEECccceEEeEEecCCC---cEEEEEEEeCC--------------------CCeeEEEEEeCC----ccCCcceEE
Q psy16205 22 GLNPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN--------------------GKLLGQRILPLD----GLQAGYRHI 74 (109)
Q Consensus 22 g~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d--------------------~~~iG~~~lpl~----~l~~G~r~v 74 (109)
+-+|.|||- +.|+ |...++ |.|.|+||+.. +.+||++.++|- .|++|...+
T Consensus 56 ~~~~~WnEw-L~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L 133 (178)
T cd08399 56 TEEVLWNTW-LEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVL 133 (178)
T ss_pred CCCcccccc-EECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEE
Confidence 457999996 9998 866555 79999999841 357888888873 478887544
Q ss_pred Ee
Q psy16205 75 SL 76 (109)
Q Consensus 75 ~L 76 (109)
.+
T Consensus 134 ~~ 135 (178)
T cd08399 134 HM 135 (178)
T ss_pred EE
Confidence 43
No 137
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=95.18 E-value=0.03 Score=38.25 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=38.5
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEe----cC--C---------CcEEEEEEEeCC--------------CCeeEEEEE
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVV----LP--D---------LAVLRFGVYDEN--------------GKLLGQRIL 62 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~----~~--~---------l~~l~f~V~d~d--------------~~~iG~~~l 62 (109)
+.+|+++.+ +|-|.||.+ ++|. ++ .. + .+.+.|+||-.+ |=+||.+.+
T Consensus 49 ~r~TrtVAr-SFcPeF~Hh-~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~I 125 (143)
T cd08683 49 LRRTRTVAR-SFCPEFNHH-VEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKI 125 (143)
T ss_pred eeeccchhh-hcCCCccce-EEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEe
Confidence 357999975 799999997 8876 42 00 1 258899999865 337788888
Q ss_pred eCCcc
Q psy16205 63 PLDGL 67 (109)
Q Consensus 63 pl~~l 67 (109)
|+..|
T Consensus 126 Pl~~L 130 (143)
T cd08683 126 PLRDL 130 (143)
T ss_pred eHHHH
Confidence 87665
No 138
>KOG1327|consensus
Probab=94.91 E-value=0.052 Score=44.43 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=60.5
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC--------CCeeEEEEEeCCccCC-cceEEEeecCCCCC
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN--------GKLLGQRILPLDGLQA-GYRHISLRTEANFP 83 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d--------~~~iG~~~lpl~~l~~-G~r~v~L~d~~g~~ 83 (109)
.+|.+|.+ .+||.|-++ |..+ ......-.++|.++|-+ .+++|+...-++.+.+ ..+..+|.-+.+++
T Consensus 43 ~rte~i~~-~~~p~f~~~-~~l~-y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~ 119 (529)
T KOG1327|consen 43 GRTEVIRN-VLNPFFTKK-FLLQ-YRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN 119 (529)
T ss_pred cceeeeec-cCCccceee-echh-heeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence 57888875 699999987 7765 55556678999999965 6899999998877653 34567777776666
Q ss_pred CCCCEEEEEEEE
Q psy16205 84 MSLPMLFCNIEL 95 (109)
Q Consensus 84 ~~~~~l~v~i~~ 95 (109)
-..+++.|+.+.
T Consensus 120 ~~~g~iti~aee 131 (529)
T KOG1327|consen 120 AGSGTITISAEE 131 (529)
T ss_pred CCcccEEEEeec
Confidence 667777777754
No 139
>KOG1013|consensus
Probab=94.71 E-value=0.02 Score=44.36 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=42.6
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCCCc--EEEEEEEeCC----CCeeEEEEEeCCccCCcceEEEeecCCCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDEN----GKLLGQRILPLDGLQAGYRHISLRTEANF 82 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~l~--~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r~v~L~d~~g~ 82 (109)
|.||.+. ++++||+||++ |.|. +...+++ .+.++|||++ ++++|-.. ..+||--++++..+.
T Consensus 271 kkKt~~~-K~t~~p~fd~~-~~~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~------~g~~rr~~v~~h~gr 338 (362)
T KOG1013|consen 271 KKKTQQK-KKTLNPEFDEE-FFYD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSM------LGGYRRGEVHKHWGR 338 (362)
T ss_pred cccCcch-hccCCcccccc-cccc-CCccchhcceEEEeecccCCCcCccCCCccc------ccccccchhhcCccc
Confidence 4578765 46899999997 9998 8777776 5678999987 56666432 234454555555444
No 140
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=94.28 E-value=0.51 Score=33.57 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=36.1
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEeCC----------CCeeEEEEEeC
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYDEN----------GKLLGQRILPL 64 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d~d----------~~~iG~~~lpl 64 (109)
..+.|.+.+.| -+|.|+|+ +..+ ++.. +...|+|+.+.-+ ..++|-+.+||
T Consensus 54 ~~~~S~V~yHn-k~P~f~DE-iKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL 116 (179)
T cd08696 54 TEAYTAVTYHN-KSPDFYDE-IKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL 116 (179)
T ss_pred eeEEEEEEEeC-CCCcccce-EEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence 35678877775 79999997 8876 6544 4468899888843 24566666666
No 141
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=93.28 E-value=0.87 Score=32.57 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=40.6
Q ss_pred ceEeeeeecCCCCCCEECccceEEeEEecC--CCcEEEEEEEeCC-------------CCeeEEEEEeCCc----cCCcc
Q psy16205 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLP--DLAVLRFGVYDEN-------------GKLLGQRILPLDG----LQAGY 71 (109)
Q Consensus 11 ~k~kT~~i~~ng~nPvWne~~f~f~~v~~~--~l~~l~f~V~d~d-------------~~~iG~~~lpl~~----l~~G~ 71 (109)
..+.|.+.+.| -+|.|+|+ +..+ ++.. +...|+|+.+.-+ ..++|-+.+||-. |..|.
T Consensus 56 ~~~~s~V~yh~-k~P~f~dE-iKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~ 132 (185)
T cd08697 56 TSAYAAVLHHN-QNPEFYDE-IKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEE 132 (185)
T ss_pred eEEEEEEEEcC-CCCcccee-EEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCC
Confidence 35678888776 89999997 8876 6433 3468888888743 2346666666644 44444
Q ss_pred eEEEe
Q psy16205 72 RHISL 76 (109)
Q Consensus 72 r~v~L 76 (109)
..+|.
T Consensus 133 ~~LpV 137 (185)
T cd08697 133 QTPPV 137 (185)
T ss_pred EeeeE
Confidence 44443
No 142
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.54 E-value=0.89 Score=31.73 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=63.1
Q ss_pred cceEeeeeecCCCCCCEECccceEEeEEecCC------C-------cEEEEEEEeCC----CCeeEEEEEeCCc-cCCcc
Q psy16205 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPD------L-------AVLRFGVYDEN----GKLLGQRILPLDG-LQAGY 71 (109)
Q Consensus 10 ~~k~kT~~i~~ng~nPvWne~~f~f~~v~~~~------l-------~~l~f~V~d~d----~~~iG~~~lpl~~-l~~G~ 71 (109)
.++|+|+.|. -+.+|-|+|. |.|+ +.... . .-|++.|...| ..++|+..+-.+. |.+|+
T Consensus 44 ~QRF~S~~Vp-~~~eP~f~e~-Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 44 GQRFRSKPVP-CACEPDFNEE-FLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred CceEecCCcc-cccCCCCCCc-EEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 3568898886 5789999997 9998 86443 1 23556666555 4799999999866 67777
Q ss_pred e----EEEeecCCCC-CCCCCEEEEEEEEEEccC
Q psy16205 72 R----HISLRTEANF-PMSLPMLFCNIELKIYVP 100 (109)
Q Consensus 72 r----~v~L~d~~g~-~~~~~~l~v~i~~~~~~~ 100 (109)
. .+.|+....+ .++-+.|-+++++-...+
T Consensus 121 ~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 121 GSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred CccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 4 4788875554 456778888888765544
No 143
>KOG1326|consensus
Probab=90.21 E-value=0.088 Score=45.92 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.8
Q ss_pred cEEEEEEEeCC----CCeeEEEEEeCCccCCcce
Q psy16205 43 AVLRFGVYDEN----GKLLGQRILPLDGLQAGYR 72 (109)
Q Consensus 43 ~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~r 72 (109)
+.|.++|||.| |+++|...+.|+.+-.|++
T Consensus 939 ~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~ 972 (1105)
T KOG1326|consen 939 ARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAK 972 (1105)
T ss_pred hheEEEecccCccChhhhhhheeechhhCcCCCC
Confidence 67999999999 9999999999999887764
No 144
>KOG1326|consensus
Probab=89.24 E-value=0.087 Score=45.93 Aligned_cols=49 Identities=29% Similarity=0.506 Sum_probs=40.3
Q ss_pred eeeecCCCCCCEECccceEEeEEecCCCcEEEEEEEeCC----CCeeEEEEEeCCc
Q psy16205 15 TRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN----GKLLGQRILPLDG 66 (109)
Q Consensus 15 T~~i~~ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d----~~~iG~~~lpl~~ 66 (109)
+..+ .|++||+|++- |++. ...|-...+.++|||+| ++.||+..+.+..
T Consensus 651 ~~yi-p~tlnPVfgkm-fel~-~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 651 AHYI-PNTLNPVFGKM-FELE-CLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hhcC-cCCCCcHHHHH-HHhh-cccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 3444 46899999997 8887 77787788999999998 8899999888744
No 145
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=86.97 E-value=4.5 Score=26.33 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=43.6
Q ss_pred EeeeeecCCCCCCEECccceEEeEEecCCC-------cEEEEEEEeCC---CCeeEEEEEeCCccC--Cc---ceEEEee
Q psy16205 13 FRTRLCPSNGLNPVYNEEPFLFRKVVLPDL-------AVLRFGVYDEN---GKLLGQRILPLDGLQ--AG---YRHISLR 77 (109)
Q Consensus 13 ~kT~~i~~ng~nPvWne~~f~f~~v~~~~l-------~~l~f~V~d~d---~~~iG~~~lpl~~l~--~G---~r~v~L~ 77 (109)
+.|.++. |.||.+|-+ -.|. |...++ ..+.++++..- -..+|.+.+++..+- .| +-.+.|.
T Consensus 13 q~Tpvv~--G~~p~y~ft-s~y~-V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~ 88 (107)
T PF11618_consen 13 QTTPVVR--GLNPFYDFT-SQYK-VTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERIHGSATLV 88 (107)
T ss_dssp EE---EE--SSS----EE-EEEE-E--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--EEEEEEE-
T ss_pred eccccee--CCCccceeE-EEEE-EEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceEEEEEEEe
Confidence 5677774 799999987 7776 765542 46778777743 679999999998875 23 2458888
Q ss_pred cCCCCCCCCCEEEEEEEEE
Q psy16205 78 TEANFPMSLPMLFCNIELK 96 (109)
Q Consensus 78 d~~g~~~~~~~l~v~i~~~ 96 (109)
+.+|+ ..++|-..+.++
T Consensus 89 g~~~~--~~g~l~y~~rl~ 105 (107)
T PF11618_consen 89 GVSGE--DFGTLEYWIRLR 105 (107)
T ss_dssp BSSS---TSEEEEEEEEEE
T ss_pred ccCCC--eEEEEEEEEEec
Confidence 88888 556766666554
No 146
>KOG1327|consensus
Probab=86.19 E-value=0.63 Score=38.29 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=40.0
Q ss_pred eEeeeeecCCCCCCEECccceEEeEEecCC-CcEEEEEEEeCC----CCeeEEEEEeCCccCC
Q psy16205 12 EFRTRLCPSNGLNPVYNEEPFLFRKVVLPD-LAVLRFGVYDEN----GKLLGQRILPLDGLQA 69 (109)
Q Consensus 12 k~kT~~i~~ng~nPvWne~~f~f~~v~~~~-l~~l~f~V~d~d----~~~iG~~~lpl~~l~~ 69 (109)
-++|.+++ |++||.|-+.......+...+ -..+.+.++|++ +++||++.-++..++.
T Consensus 175 ~~~tEv~~-n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 175 LYRTEVVK-NTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ccccceec-cCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 35788776 469999997322222122222 356789999987 5899999999988874
No 147
>KOG0906|consensus
Probab=84.65 E-value=0.55 Score=39.77 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=40.3
Q ss_pred ECccceEEeEEecCCC---cEEEEEEEeCC----CCeeEEEEEeCCc----cCCcceEEEeec
Q psy16205 27 YNEEPFLFRKVVLPDL---AVLRFGVYDEN----GKLLGQRILPLDG----LQAGYRHISLRT 78 (109)
Q Consensus 27 Wne~~f~f~~v~~~~l---~~l~f~V~d~d----~~~iG~~~lpl~~----l~~G~r~v~L~d 78 (109)
||| ++++. |..+++ |.+.+++||.+ ..++|..++.+-. +++|...+++.-
T Consensus 79 wne-wLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~ 139 (843)
T KOG0906|consen 79 WNE-WLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWP 139 (843)
T ss_pred hhh-hhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccc
Confidence 999 59998 887776 79999999987 5689988888744 788887777653
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=83.70 E-value=1.1 Score=28.57 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCEECccceEEeEEecCCC---cEEEEEEEeCC
Q psy16205 23 LNPVYNEEPFLFRKVVLPDL---AVLRFGVYDEN 53 (109)
Q Consensus 23 ~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~d 53 (109)
..+.|||- ..|+ |...++ |.|.|++|+..
T Consensus 60 ~~~~Wnew-l~f~-i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 60 PSVKWNEW-LTFP-IQISDLPREARLCITIYEVK 91 (100)
T ss_pred CCccccee-EEcc-CchhcCChhhEEEEEEEEee
Confidence 45899996 9997 865554 79999999864
No 149
>KOG1329|consensus
Probab=79.53 E-value=3.6 Score=35.86 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=59.8
Q ss_pred eeeeecCCCCCCEECccceEEeEEecC-CCcEEEEEEEeCC----CCeeEEEEEeCCccCCcc---eEEEeecCCCCCCC
Q psy16205 14 RTRLCPSNGLNPVYNEEPFLFRKVVLP-DLAVLRFGVYDEN----GKLLGQRILPLDGLQAGY---RHISLRTEANFPMS 85 (109)
Q Consensus 14 kT~~i~~ng~nPvWne~~f~f~~v~~~-~l~~l~f~V~d~d----~~~iG~~~lpl~~l~~G~---r~v~L~d~~g~~~~ 85 (109)
+|..+.+.--+|.|++. |. +.+. ..+.+.|+|.+.+ ..++|.+.+|+..+..|- .++++.+.++++..
T Consensus 153 ~t~~~~~f~e~s~~~f~-~~---~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~ 228 (887)
T KOG1329|consen 153 RTHVIYEFLENSRWSFS-FD---IGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQ 228 (887)
T ss_pred chhhhhcccccchhhhh-cc---ccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCcccc
Confidence 45556554468999975 65 5444 3478999999987 578999999999988875 46888888887766
Q ss_pred -CCEEEEEEEEEEc
Q psy16205 86 -LPMLFCNIELKIY 98 (109)
Q Consensus 86 -~~~l~v~i~~~~~ 98 (109)
.+.+.+++.+..+
T Consensus 229 ~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 229 KGSNESLRLGFTPM 242 (887)
T ss_pred CCcccceEEeeEee
Confidence 6666676766543
No 150
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=78.94 E-value=12 Score=24.20 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCEECccceEEeEEecCCCcEEEEEEEeCC-CCeeEEEEEeCCccCCcceEEEeecCCCCCCCCCEEEEEEEE
Q psy16205 23 LNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN-GKLLGQRILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 23 ~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d-~~~iG~~~lpl~~l~~G~r~v~L~d~~g~~~~~~~l~v~i~~ 95 (109)
-+..|+++ |+++ +. -...|.+.|+=.| ..+=|-..+.|...+.|+++ + -.+...|++.+.+
T Consensus 31 s~q~WDQ~-Fti~-Ld--RsRELEI~VywrD~RslCav~~lrLEd~~~~~~~-~-------lepqg~l~~ev~f 92 (98)
T cd08687 31 SNQAWDQS-FTLE-LE--RSRELEIAVYWRDWRSLCAVKFLKLEDERHEVQL-D-------MEPQLCLVAELTF 92 (98)
T ss_pred ccccccce-eEEE-ee--cccEEEEEEEEecchhhhhheeeEhhhhccccee-c-------cccccEEEEEEEe
Confidence 36889997 9987 63 3467899999988 66777777777774444332 1 1235667776655
No 151
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=74.97 E-value=20 Score=28.04 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=53.0
Q ss_pred eeeeecCCCCCCEECccceEEeEEecCCC-------cEEEEEEEeCC-----CCeeEEEEEeCCcc---CCc-----ceE
Q psy16205 14 RTRLCPSNGLNPVYNEEPFLFRKVVLPDL-------AVLRFGVYDEN-----GKLLGQRILPLDGL---QAG-----YRH 73 (109)
Q Consensus 14 kT~~i~~ng~nPvWne~~f~f~~v~~~~l-------~~l~f~V~d~d-----~~~iG~~~lpl~~l---~~G-----~r~ 73 (109)
.|.-+.. +-.|.||.+ +-|+ +....+ .=|+++.|.-| .+.||.+.++|++. ..+ .+|
T Consensus 32 ~TDpv~~-~~~p~f~te-L~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W 108 (340)
T PF12416_consen 32 ETDPVPH-TESPQFNTE-LAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKW 108 (340)
T ss_pred eecCCCC-CCCceeecc-eeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCe
Confidence 4444433 467999986 8887 532222 33555555443 78999999999999 666 489
Q ss_pred EEeecCCCCC-CCCCEEEEEEEEEE
Q psy16205 74 ISLRTEANFP-MSLPMLFCNIELKI 97 (109)
Q Consensus 74 v~L~d~~g~~-~~~~~l~v~i~~~~ 97 (109)
.+|..-.++- ...+.|++-+.+.+
T Consensus 109 ~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 109 YKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred eEccccccccccCCccEEEEEEEec
Confidence 9999864432 23567777776653
No 152
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=74.07 E-value=17 Score=21.96 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=40.0
Q ss_pred eEEeEEecCCC-cEEEEEEEeCCCCeeEEEEEeCCccCCcceEEEe--ecCCCCCCCCCEEEEEEEEE
Q psy16205 32 FLFRKVVLPDL-AVLRFGVYDENGKLLGQRILPLDGLQAGYRHISL--RTEANFPMSLPMLFCNIELK 96 (109)
Q Consensus 32 f~f~~v~~~~l-~~l~f~V~d~d~~~iG~~~lpl~~l~~G~r~v~L--~d~~g~~~~~~~l~v~i~~~ 96 (109)
..|. +..++- ..+.+.|+|.+..++-+ +++.....|...+.| .|.+|.+++-..-.+.+...
T Consensus 14 ~~~~-~~l~~~a~~v~v~I~d~~G~~V~t--~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~ 78 (81)
T PF13860_consen 14 GSIE-YTLPEDADNVTVTIYDSNGQVVRT--ISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTAT 78 (81)
T ss_dssp EEEE-EEECSSCEEEEEEEEETTS-EEEE--EEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEEE
T ss_pred EEEE-EeCCCcccEEEEEEEcCCCCEEEE--EEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEEE
Confidence 4443 445544 46899999998888855 455777778766655 57889998877777777654
No 153
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=69.32 E-value=10 Score=30.19 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=32.0
Q ss_pred eeEEEEEeCCc-cCCcc---eEEEeecCCCCCCCCCEEEEEEEEE
Q psy16205 56 LLGQRILPLDG-LQAGY---RHISLRTEANFPMSLPMLFCNIELK 96 (109)
Q Consensus 56 ~iG~~~lpl~~-l~~G~---r~v~L~d~~g~~~~~~~l~v~i~~~ 96 (109)
++|.+.+|+.. +..|. .|+|+.|...+.....++ +++.++
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 48999999999 77775 689999988887776666 676654
No 154
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=61.82 E-value=42 Score=21.89 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=51.6
Q ss_pred eeeeecCCCCCCEECccceEEeEEec---CC-----CcEEEEEEEeCC---C-CeeEEEEEeCCccCCcc-----eEEEe
Q psy16205 14 RTRLCPSNGLNPVYNEEPFLFRKVVL---PD-----LAVLRFGVYDEN---G-KLLGQRILPLDGLQAGY-----RHISL 76 (109)
Q Consensus 14 kT~~i~~ng~nPvWne~~f~f~~v~~---~~-----l~~l~f~V~d~d---~-~~iG~~~lpl~~l~~G~-----r~v~L 76 (109)
+|..+....-.-.|||+ |.+. +.. .. --.+.|.|+... . ..+|.+.+-|+.+..-. +.++|
T Consensus 41 ~t~~~~~~~~~v~w~e~-~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l 118 (143)
T PF10358_consen 41 TTSRANVKNGKVQWNEE-FSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLL 118 (143)
T ss_pred eeeeeeccccEEEEeeE-EEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeC
Confidence 34434333346799997 8886 522 21 136888888873 3 48999999998876532 34566
Q ss_pred ecCCCCCCCCCEEEEEEEEEE
Q psy16205 77 RTEANFPMSLPMLFCNIELKI 97 (109)
Q Consensus 77 ~d~~g~~~~~~~l~v~i~~~~ 97 (109)
... +-..++|.+.+.+..
T Consensus 119 ~~~---~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 119 KKC---KKSNATLSISISLSE 136 (143)
T ss_pred ccC---CCCCcEEEEEEEEEE
Confidence 554 345688999888764
No 155
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=52.52 E-value=75 Score=22.51 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=30.3
Q ss_pred eEEeEEecCCCcEEEEEEEeCCCCeeEEEEEeCCccCCcceEEEee
Q psy16205 32 FLFRKVVLPDLAVLRFGVYDENGKLLGQRILPLDGLQAGYRHISLR 77 (109)
Q Consensus 32 f~f~~v~~~~l~~l~f~V~d~d~~~iG~~~lpl~~l~~G~r~v~L~ 77 (109)
|-|- |+........|.+.|.++..+-+..+++.. ..|.-.++|-
T Consensus 38 f~~Y-vP~~~~~~~eF~L~d~~~~~iy~~~~~l~~-~~GIv~i~LP 81 (189)
T PF06051_consen 38 FWFY-VPYTSAETVEFVLQDEQGNPIYQTTFPLPQ-QPGIVSITLP 81 (189)
T ss_pred EEEE-ecCCCCcceEEEEecCCCCEEeEEEEecCC-CCCEEEEECC
Confidence 7776 766655566999999886667777777665 5566555554
No 156
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=35.78 E-value=1e+02 Score=21.34 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=4.5
Q ss_pred eEEEeecCCCCC
Q psy16205 72 RHISLRTEANFP 83 (109)
Q Consensus 72 r~v~L~d~~g~~ 83 (109)
+.+.|+|.+|++
T Consensus 53 ~~~~l~D~~G~~ 64 (187)
T PF04525_consen 53 KKRTLMDASGNP 64 (187)
T ss_dssp TEEEEE-TTS-E
T ss_pred CEEEEECCCCCE
Confidence 334445555443
No 157
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=34.64 E-value=1.5e+02 Score=20.35 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCCCCEECccceEEeEEecCCCcEEEEEEEeCC---CCeeEEEEEeCCccCCc
Q psy16205 21 NGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN---GKLLGQRILPLDGLQAG 70 (109)
Q Consensus 21 ng~nPvWne~~f~f~~v~~~~l~~l~f~V~d~d---~~~iG~~~lpl~~l~~G 70 (109)
..|.=.|||. |.++ |.... ..|.+.||... +..|+++.+|+-.....
T Consensus 60 ~dF~v~f~~~-f~v~-i~~~P-esi~l~i~E~~~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 60 SDFRVHFNEI-FNVQ-ITRWP-ESIKLEIYEKSGLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred CCeEEeccCE-EEEE-EecCC-CEEEEEEEEccCccceEEEEEEeeCCCCccc
Confidence 3466677887 9987 53321 46888999876 88999999998654433
No 158
>PF10382 DUF2439: Protein of unknown function (DUF2439); InterPro: IPR018838 This domain is found at the N-terminal of proteins implicated in telomere maintenance in Saccharomyces cerevisiae (Baker's yeast) [] and in meiotic chromosome segregation in Schizosaccharomyces pombe (Fission yeast) [].
Probab=31.71 E-value=1.1e+02 Score=18.75 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEEeCCCCeeEEEEEeCC
Q psy16205 45 LRFGVYDENGKLLGQRILPLD 65 (109)
Q Consensus 45 l~f~V~d~d~~~iG~~~lpl~ 65 (109)
=++.++|.++.+||...+.-+
T Consensus 31 ~kv~Lyde~~~~i~~~~~~~~ 51 (83)
T PF10382_consen 31 KKVMLYDEDGNLIGSDFLKNS 51 (83)
T ss_pred CEEEEEcCCCCEEeEEEEecC
Confidence 378999999999999988877
No 159
>PF07100 ASRT: Anabaena sensory rhodopsin transducer; InterPro: IPR009794 This family consists of several hypothetical bacterial proteins of around 125 resides in length, including the hypothetical protein TM1070 from Thermotoga maritima, which has a beta-sandwich structure with a jelly-roll fold. The function of these proteins is unknown. ; PDB: 1NC7_A 2II9_D 2IIA_A 2II8_B 2II7_G.
Probab=27.07 E-value=2e+02 Score=19.28 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=26.4
Q ss_pred cCCCcEEEEEEEeCCCCeeEEEEEeCCccCCcceEEEeec-CCCCCCC
Q psy16205 39 LPDLAVLRFGVYDENGKLLGQRILPLDGLQAGYRHISLRT-EANFPMS 85 (109)
Q Consensus 39 ~~~l~~l~f~V~d~d~~~iG~~~lpl~~l~~G~r~v~L~d-~~g~~~~ 85 (109)
..+-|.|+|++|=.|.+.+|-+.+-+.+-| .||+.+.+ ..+++++
T Consensus 37 ~d~dA~i~it~yF~Dr~Pvgpy~~~VparR--trH~R~ndl~dpe~iP 82 (121)
T PF07100_consen 37 GDEDAHIEITFYFEDRDPVGPYRVTVPARR--TRHLRFNDLIDPEPIP 82 (121)
T ss_dssp SSS-EEEEEEEEESSS--EEEEEEEE-TTE--EEEEEGGG--SCS---
T ss_pred CCCceEEEEEEEEcCCCCCccEEEEEcCce--EEEEEeccccCCccCC
Confidence 346689999999999999997766554332 46777765 3445554
No 160
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=26.47 E-value=2.8e+02 Score=20.84 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=38.8
Q ss_pred eEEeEEecCCC-cEEEEEEEeCCCCeeEEEEEeCCccCCcceEEEe--ecCCCCCCCCCEEEEEEEE
Q psy16205 32 FLFRKVVLPDL-AVLRFGVYDENGKLLGQRILPLDGLQAGYRHISL--RTEANFPMSLPMLFCNIEL 95 (109)
Q Consensus 32 f~f~~v~~~~l-~~l~f~V~d~d~~~iG~~~lpl~~l~~G~r~v~L--~d~~g~~~~~~~l~v~i~~ 95 (109)
..|. +..++- ..+++.|+|.+..++-. +++..+..|...+.| .|.+|.+++-..-.+++..
T Consensus 130 ~~~~-~~l~~~a~~v~v~I~D~~G~~V~t--~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 130 IALK-LYFPEDSDEGTLEIYDSNNKLVEK--IDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred eEEE-EecCCcCceEEEEEEeCCCCEEEE--EecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 3443 444544 47999999988777644 566777777654444 4566777765555555554
No 161
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=22.91 E-value=86 Score=20.08 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCeeEEEEEeCCccC----------------Ccc-eEEEeecCCCCCCCCCEEEEEEE
Q psy16205 54 GKLLGQRILPLDGLQ----------------AGY-RHISLRTEANFPMSLPMLFCNIE 94 (109)
Q Consensus 54 ~~~iG~~~lpl~~l~----------------~G~-r~v~L~d~~g~~~~~~~l~v~i~ 94 (109)
..+||++.+++..+- .+. ..+||.|+.|+.+..-+|+++++
T Consensus 47 ~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 47 PMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLS 104 (112)
T ss_pred cceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEe
Confidence 668999999986642 122 35899999999876666666664
No 162
>KOG0904|consensus
Probab=21.94 E-value=69 Score=28.61 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=34.2
Q ss_pred CCCCEECccceEEeEEecCCC---cEEEEEEEeC----------------C----CCeeEEEEEeCCc----cCCcce
Q psy16205 22 GLNPVYNEEPFLFRKVVLPDL---AVLRFGVYDE----------------N----GKLLGQRILPLDG----LQAGYR 72 (109)
Q Consensus 22 g~nPvWne~~f~f~~v~~~~l---~~l~f~V~d~----------------d----~~~iG~~~lpl~~----l~~G~r 72 (109)
.-+|.||+. +.|+ |...++ |.|.|+|+.- + +-++|++.+.+-. |++|-.
T Consensus 390 ~~~~~Wn~~-leFD-I~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~ 465 (1076)
T KOG0904|consen 390 CSFPLWNEW-LEFD-IYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEY 465 (1076)
T ss_pred ccchhccce-eEee-eecCCCChhhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCce
Confidence 467999996 9998 865554 6666655542 0 5588888888754 778864
No 163
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=21.54 E-value=1.7e+02 Score=17.00 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=17.4
Q ss_pred CcEEEEEEEeCCCCeeEEEEEeC
Q psy16205 42 LAVLRFGVYDENGKLLGQRILPL 64 (109)
Q Consensus 42 l~~l~f~V~d~d~~~iG~~~lpl 64 (109)
...=++.|.|.++.+||+..+.+
T Consensus 43 ~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 43 PGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred CcCEEEEEEcCCCCEEEEEEEEE
Confidence 34567888998888999877654
No 164
>KOG4134|consensus
Probab=21.22 E-value=74 Score=23.77 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=40.9
Q ss_pred CCeeEEEEEeCCccCCcceEEEeecCCCCC---CCCCEEEEEEEEEEccCCCcCCCCC
Q psy16205 54 GKLLGQRILPLDGLQAGYRHISLRTEANFP---MSLPMLFCNIELKIYVPDGFEGNKG 108 (109)
Q Consensus 54 ~~~iG~~~lpl~~l~~G~r~v~L~d~~g~~---~~~~~l~v~i~~~~~~~~~~~~~~~ 108 (109)
+..++.+.-.+..+--||..+..+++.++- -++.-|.|++.+--+.|.+.+--.|
T Consensus 56 d~~vl~y~~~l~GivLgydnIKvLg~~aki~~D~pf~hlwi~adfyVf~Pk~Gd~LeG 113 (253)
T KOG4134|consen 56 DTKVLFYDSGLDGIVLGYDNIKVLGQTAKIRADDPFMHLWINADFYVFRPKAGDILEG 113 (253)
T ss_pred hHHHhhhccCCCceEEeecceEeeccccceecCCCceEEEEeeeEEEECCCCCCeeee
Confidence 445566666666667789888888888763 3578899999999999998765444
No 165
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=20.19 E-value=1.7e+02 Score=18.30 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred ECccceEEeEEecCCCcEEEEEEEeCC-CCeeEE
Q psy16205 27 YNEEPFLFRKVVLPDLAVLRFGVYDEN-GKLLGQ 59 (109)
Q Consensus 27 Wne~~f~f~~v~~~~l~~l~f~V~d~d-~~~iG~ 59 (109)
+|-. +.|. +. .+...+.++|.|.+ +++|-+
T Consensus 53 ~~~~-l~F~-vd-e~~~~~vVkViD~~T~eVIRq 83 (107)
T PF03646_consen 53 LNTS-LRFS-VD-EESGRVVVKVIDKETGEVIRQ 83 (107)
T ss_dssp SS---EEEE-EE-EETTEEEEEEEETTT-SEEEE
T ss_pred cCCc-eEEE-Ee-cCCCcEEEEEEECCCCcEEEe
Confidence 4554 7776 63 45677889999998 788766
No 166
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=20.17 E-value=3.7e+02 Score=19.91 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCC-EECccceEEeEEecCCC--cEEEEEEEeC
Q psy16205 23 LNP-VYNEEPFLFRKVVLPDL--AVLRFGVYDE 52 (109)
Q Consensus 23 ~nP-vWne~~f~f~~v~~~~l--~~l~f~V~d~ 52 (109)
-+| ++|.+ |.++ -++|.+ ++..++.++.
T Consensus 175 ~~PEvy~~~-lele-~s~p~~gi~~~t~t~~~~ 205 (252)
T COG4076 175 PIPEVYNKK-LELE-TSEPNLGIAFFTWTEYEG 205 (252)
T ss_pred CCchhhcce-eEEe-cCCCCcceEEEEEEEecC
Confidence 455 67876 8887 777755 4666677664
Done!